Multiple sequence alignment - TraesCS1A01G279100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G279100 chr1A 100.000 5309 0 0 1 5309 474703948 474698640 0.000000e+00 9804.0
1 TraesCS1A01G279100 chr1A 99.270 137 1 0 2289 2425 474701527 474701391 1.140000e-61 248.0
2 TraesCS1A01G279100 chr1A 99.270 137 1 0 2422 2558 474701660 474701524 1.140000e-61 248.0
3 TraesCS1A01G279100 chr1A 84.091 88 11 3 259 345 518020787 518020702 1.230000e-11 82.4
4 TraesCS1A01G279100 chr1B 94.369 2220 87 18 2418 4633 501367191 501365006 0.000000e+00 3373.0
5 TraesCS1A01G279100 chr1B 90.713 2035 83 35 416 2425 501369013 501367060 0.000000e+00 2614.0
6 TraesCS1A01G279100 chr1B 93.830 389 17 3 4718 5105 501364712 501364330 3.560000e-161 579.0
7 TraesCS1A01G279100 chr1B 87.566 378 33 8 1 375 501369380 501369014 4.910000e-115 425.0
8 TraesCS1A01G279100 chr1D 90.178 2301 91 47 7 2279 375958185 375955992 0.000000e+00 2872.0
9 TraesCS1A01G279100 chr1D 95.447 1801 61 7 2823 4616 375955926 375954140 0.000000e+00 2852.0
10 TraesCS1A01G279100 chr1D 91.765 255 7 2 4851 5105 375953576 375953336 5.090000e-90 342.0
11 TraesCS1A01G279100 chr1D 91.518 224 10 2 4637 4860 375953988 375953774 3.110000e-77 300.0
12 TraesCS1A01G279100 chr1D 100.000 40 0 0 2514 2553 375955961 375955922 2.050000e-09 75.0
13 TraesCS1A01G279100 chr1D 100.000 40 0 0 2381 2420 375955961 375955922 2.050000e-09 75.0
14 TraesCS1A01G279100 chr3A 90.310 516 48 2 998 1512 616468778 616469292 0.000000e+00 675.0
15 TraesCS1A01G279100 chr3D 89.535 516 46 7 998 1512 474118139 474118647 0.000000e+00 647.0
16 TraesCS1A01G279100 chr3D 80.469 128 18 6 259 380 549487943 549487817 2.040000e-14 91.6
17 TraesCS1A01G279100 chr3D 89.474 57 6 0 332 388 320835601 320835545 7.380000e-09 73.1
18 TraesCS1A01G279100 chr3B 88.889 522 44 12 994 1512 630363989 630364499 9.700000e-177 630.0
19 TraesCS1A01G279100 chr7A 84.615 130 19 1 260 388 511930682 511930553 1.550000e-25 128.0
20 TraesCS1A01G279100 chr5B 83.206 131 21 1 259 388 133598076 133598206 9.340000e-23 119.0
21 TraesCS1A01G279100 chr5B 80.745 161 24 7 257 412 230883384 230883542 9.340000e-23 119.0
22 TraesCS1A01G279100 chr5B 81.343 134 18 6 261 388 315187171 315187303 9.410000e-18 102.0
23 TraesCS1A01G279100 chr2B 81.746 126 18 4 264 388 286981009 286981130 3.380000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G279100 chr1A 474698640 474703948 5308 True 3433.333333 9804 99.513333 1 5309 3 chr1A.!!$R2 5308
1 TraesCS1A01G279100 chr1B 501364330 501369380 5050 True 1747.750000 3373 91.619500 1 5105 4 chr1B.!!$R1 5104
2 TraesCS1A01G279100 chr1D 375953336 375958185 4849 True 1086.000000 2872 94.818000 7 5105 6 chr1D.!!$R1 5098
3 TraesCS1A01G279100 chr3A 616468778 616469292 514 False 675.000000 675 90.310000 998 1512 1 chr3A.!!$F1 514
4 TraesCS1A01G279100 chr3D 474118139 474118647 508 False 647.000000 647 89.535000 998 1512 1 chr3D.!!$F1 514
5 TraesCS1A01G279100 chr3B 630363989 630364499 510 False 630.000000 630 88.889000 994 1512 1 chr3B.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 370 0.383231 CCGGTCCGTATGTAGTCCAC 59.617 60.0 11.06 0.0 0.00 4.02 F
1849 1886 0.249398 CGCCCCTGCTTACAGTTACT 59.751 55.0 0.00 0.0 42.81 2.24 F
2301 2343 0.255033 GAGGGGGCTTTGGATACGTT 59.745 55.0 0.00 0.0 42.51 3.99 F
4023 4067 0.321475 AGCTTGAACTGAGGAGCTGC 60.321 55.0 0.00 0.0 43.37 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1893 0.173255 ACGCCAGCCATGCAAATTAC 59.827 50.0 0.00 0.00 0.00 1.89 R
3717 3761 0.669318 TGCAGAACGTTCCGATGGAC 60.669 55.0 24.22 7.16 0.00 4.02 R
4290 4334 0.249238 CTCACGCAGGATACAGAGGC 60.249 60.0 0.00 0.00 41.41 4.70 R
5166 5634 0.031994 GCACATTGAGCCGGTGTTTT 59.968 50.0 1.90 0.00 35.05 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.153217 AGTGCATATTGTAAAGTTACCAACC 57.847 36.000 0.00 0.00 32.72 3.77
49 50 7.887996 TTGTAAAGTTACCAACCGTATACAG 57.112 36.000 3.32 0.00 32.72 2.74
95 96 7.551974 CACTCAAGTAGATGAAAATGATGACCT 59.448 37.037 0.00 0.00 0.00 3.85
96 97 8.762645 ACTCAAGTAGATGAAAATGATGACCTA 58.237 33.333 0.00 0.00 0.00 3.08
99 100 9.039870 CAAGTAGATGAAAATGATGACCTAGAC 57.960 37.037 0.00 0.00 0.00 2.59
100 101 8.546083 AGTAGATGAAAATGATGACCTAGACT 57.454 34.615 0.00 0.00 0.00 3.24
101 102 9.647918 AGTAGATGAAAATGATGACCTAGACTA 57.352 33.333 0.00 0.00 0.00 2.59
104 105 9.378504 AGATGAAAATGATGACCTAGACTATCT 57.621 33.333 0.00 0.00 0.00 1.98
105 106 9.995003 GATGAAAATGATGACCTAGACTATCTT 57.005 33.333 0.00 0.00 0.00 2.40
110 111 9.440761 AAATGATGACCTAGACTATCTTTACCT 57.559 33.333 0.00 0.00 0.00 3.08
111 112 9.440761 AATGATGACCTAGACTATCTTTACCTT 57.559 33.333 0.00 0.00 0.00 3.50
112 113 8.239038 TGATGACCTAGACTATCTTTACCTTG 57.761 38.462 0.00 0.00 0.00 3.61
256 262 6.945072 AGAATTAATCGATGCTAAAACGACC 58.055 36.000 0.00 0.00 38.79 4.79
257 263 6.761714 AGAATTAATCGATGCTAAAACGACCT 59.238 34.615 0.00 0.00 38.79 3.85
364 370 0.383231 CCGGTCCGTATGTAGTCCAC 59.617 60.000 11.06 0.00 0.00 4.02
375 381 7.870954 TCCGTATGTAGTCCACATTGAAATATC 59.129 37.037 0.00 0.00 46.01 1.63
384 390 7.180766 AGTCCACATTGAAATATCCAAACCATT 59.819 33.333 0.00 0.00 0.00 3.16
392 398 7.327214 TGAAATATCCAAACCATTTTAGCACC 58.673 34.615 0.00 0.00 0.00 5.01
403 409 9.737844 AAACCATTTTAGCACCAAATTATGAAT 57.262 25.926 0.00 0.00 0.00 2.57
412 418 4.038402 CACCAAATTATGAATGGAGGGAGC 59.962 45.833 0.04 0.00 37.66 4.70
413 419 3.254166 CCAAATTATGAATGGAGGGAGCG 59.746 47.826 0.00 0.00 36.27 5.03
414 420 2.867109 ATTATGAATGGAGGGAGCGG 57.133 50.000 0.00 0.00 0.00 5.52
426 432 1.079888 GGAGCGGTGCATTTTTGGG 60.080 57.895 0.00 0.00 0.00 4.12
438 444 6.937465 GGTGCATTTTTGGGGATAAAAGTTAA 59.063 34.615 0.00 0.00 31.80 2.01
470 476 5.340439 AAACCAATTGACGTTAAAACCCA 57.660 34.783 7.12 0.00 0.00 4.51
476 482 3.002038 TGACGTTAAAACCCAACCACT 57.998 42.857 0.00 0.00 0.00 4.00
484 490 1.730451 AACCCAACCACTTTTCGGCG 61.730 55.000 0.00 0.00 0.00 6.46
494 501 3.308866 CCACTTTTCGGCGGTAAATCTAG 59.691 47.826 7.21 0.00 0.00 2.43
519 526 3.691744 GAGACGCCACTGAGCTCCG 62.692 68.421 12.15 7.55 0.00 4.63
539 546 0.798776 CGCTACTGGAAAGGTGCAAG 59.201 55.000 0.00 0.00 0.00 4.01
694 723 3.660111 GTTGCGGGGTGTGTCAGC 61.660 66.667 0.00 0.00 0.00 4.26
698 727 4.602259 CGGGGTGTGTCAGCGTGT 62.602 66.667 0.00 0.00 32.08 4.49
800 829 1.609783 CACATCCCCCAAGTCCTCC 59.390 63.158 0.00 0.00 0.00 4.30
803 832 2.904967 ATCCCCCAAGTCCTCCCCA 61.905 63.158 0.00 0.00 0.00 4.96
808 837 1.679898 CCAAGTCCTCCCCACACTC 59.320 63.158 0.00 0.00 0.00 3.51
809 838 1.679898 CAAGTCCTCCCCACACTCC 59.320 63.158 0.00 0.00 0.00 3.85
810 839 0.838122 CAAGTCCTCCCCACACTCCT 60.838 60.000 0.00 0.00 0.00 3.69
811 840 0.545548 AAGTCCTCCCCACACTCCTC 60.546 60.000 0.00 0.00 0.00 3.71
812 841 1.990614 GTCCTCCCCACACTCCTCC 60.991 68.421 0.00 0.00 0.00 4.30
823 856 2.285180 CTCCTCCCTCCCTCCCTG 59.715 72.222 0.00 0.00 0.00 4.45
849 882 6.239572 CCTCCAATAATTCTCTTCTCTCCTCC 60.240 46.154 0.00 0.00 0.00 4.30
850 883 6.448202 TCCAATAATTCTCTTCTCTCCTCCT 58.552 40.000 0.00 0.00 0.00 3.69
852 885 6.239572 CCAATAATTCTCTTCTCTCCTCCTCC 60.240 46.154 0.00 0.00 0.00 4.30
853 886 4.625225 AATTCTCTTCTCTCCTCCTCCT 57.375 45.455 0.00 0.00 0.00 3.69
859 892 1.528309 CTCTCCTCCTCCTCTCCGC 60.528 68.421 0.00 0.00 0.00 5.54
860 893 2.520741 CTCCTCCTCCTCTCCGCC 60.521 72.222 0.00 0.00 0.00 6.13
861 894 4.144727 TCCTCCTCCTCTCCGCCC 62.145 72.222 0.00 0.00 0.00 6.13
927 960 2.661574 AATCAATCCCCATGCCCCCG 62.662 60.000 0.00 0.00 0.00 5.73
1538 1574 3.376540 GCAACTTCTCTCGATTCGCTAT 58.623 45.455 0.00 0.00 0.00 2.97
1541 1577 5.277825 CAACTTCTCTCGATTCGCTATCTT 58.722 41.667 0.00 0.00 0.00 2.40
1622 1659 1.765314 AGGGATACAGTGACTGGATGC 59.235 52.381 19.73 19.73 41.53 3.91
1661 1698 1.207329 AGTTGATGTCCCGAAGTAGCC 59.793 52.381 0.00 0.00 0.00 3.93
1700 1737 3.089284 CCGGGCTAAATATCCATTTCCC 58.911 50.000 0.00 0.00 35.90 3.97
1744 1781 1.338674 GGGGCAATGTTTACCCAAAGC 60.339 52.381 0.00 0.00 46.21 3.51
1747 1784 2.068519 GCAATGTTTACCCAAAGCAGC 58.931 47.619 0.00 0.00 0.00 5.25
1774 1811 0.949105 CTGGACGCCCATTATACGGC 60.949 60.000 0.00 0.00 42.59 5.68
1785 1822 2.645838 TTATACGGCCCGTACTCTCT 57.354 50.000 19.86 4.73 45.07 3.10
1795 1832 3.707793 CCCGTACTCTCTTAGCATGAAC 58.292 50.000 0.00 0.00 0.00 3.18
1804 1841 3.133691 TCTTAGCATGAACGATGATGGC 58.866 45.455 0.00 0.00 33.31 4.40
1830 1867 5.511234 ACCATAGCAAAGCAGAATTCATC 57.489 39.130 8.44 0.00 0.00 2.92
1849 1886 0.249398 CGCCCCTGCTTACAGTTACT 59.751 55.000 0.00 0.00 42.81 2.24
1850 1887 1.739371 CGCCCCTGCTTACAGTTACTC 60.739 57.143 0.00 0.00 42.81 2.59
1851 1888 1.407025 GCCCCTGCTTACAGTTACTCC 60.407 57.143 0.00 0.00 42.81 3.85
1852 1889 1.906574 CCCCTGCTTACAGTTACTCCA 59.093 52.381 0.00 0.00 42.81 3.86
1853 1890 2.505819 CCCCTGCTTACAGTTACTCCAT 59.494 50.000 0.00 0.00 42.81 3.41
1855 1892 3.941483 CCCTGCTTACAGTTACTCCATTG 59.059 47.826 0.00 0.00 42.81 2.82
1856 1893 3.941483 CCTGCTTACAGTTACTCCATTGG 59.059 47.826 0.00 0.00 42.81 3.16
1857 1894 4.565652 CCTGCTTACAGTTACTCCATTGGT 60.566 45.833 1.86 0.00 42.81 3.67
1858 1895 5.338056 CCTGCTTACAGTTACTCCATTGGTA 60.338 44.000 1.86 0.00 42.81 3.25
1946 1983 9.537192 TCCTTCATAATTTGATTGATTGAATGC 57.463 29.630 0.00 0.00 33.34 3.56
1947 1984 9.542462 CCTTCATAATTTGATTGATTGAATGCT 57.458 29.630 0.00 0.00 33.34 3.79
1980 2017 4.345288 CGGTTGTTGATGATGTTGCATAG 58.655 43.478 0.00 0.00 0.00 2.23
2049 2086 1.200020 CCGAATCTGGCAGGAACAAAC 59.800 52.381 15.73 0.00 0.00 2.93
2063 2100 2.467566 ACAAACTGTAAGGTAGCCGG 57.532 50.000 0.00 0.00 39.30 6.13
2130 2167 7.596248 GTCTTTTACTGGAATCGTACTGTTGTA 59.404 37.037 0.00 0.00 0.00 2.41
2131 2168 7.811236 TCTTTTACTGGAATCGTACTGTTGTAG 59.189 37.037 0.00 0.00 0.00 2.74
2132 2169 6.579666 TTACTGGAATCGTACTGTTGTAGT 57.420 37.500 0.00 0.00 43.56 2.73
2242 2284 6.426587 ACCATGTTTATATGCCTTTCTCAGT 58.573 36.000 0.00 0.00 0.00 3.41
2279 2321 9.512435 CAAATTTGCTCTAGTTTGATAATCCTG 57.488 33.333 5.01 0.00 34.38 3.86
2280 2322 9.466497 AAATTTGCTCTAGTTTGATAATCCTGA 57.534 29.630 0.00 0.00 0.00 3.86
2281 2323 8.674263 ATTTGCTCTAGTTTGATAATCCTGAG 57.326 34.615 0.00 0.00 0.00 3.35
2282 2324 6.166984 TGCTCTAGTTTGATAATCCTGAGG 57.833 41.667 0.00 0.00 0.00 3.86
2283 2325 5.899547 TGCTCTAGTTTGATAATCCTGAGGA 59.100 40.000 2.43 2.43 35.55 3.71
2286 2328 5.841237 TCTAGTTTGATAATCCTGAGGAGGG 59.159 44.000 7.50 0.00 40.25 4.30
2287 2329 3.718956 AGTTTGATAATCCTGAGGAGGGG 59.281 47.826 7.50 0.00 40.25 4.79
2288 2330 2.422939 TGATAATCCTGAGGAGGGGG 57.577 55.000 7.50 0.00 40.25 5.40
2289 2331 0.988063 GATAATCCTGAGGAGGGGGC 59.012 60.000 7.50 0.00 40.25 5.80
2291 2333 0.346932 TAATCCTGAGGAGGGGGCTT 59.653 55.000 7.50 0.00 40.25 4.35
2292 2334 0.553612 AATCCTGAGGAGGGGGCTTT 60.554 55.000 7.50 0.00 40.25 3.51
2294 2336 2.679716 CTGAGGAGGGGGCTTTGG 59.320 66.667 0.00 0.00 0.00 3.28
2295 2337 1.925455 CTGAGGAGGGGGCTTTGGA 60.925 63.158 0.00 0.00 0.00 3.53
2298 2340 0.474614 GAGGAGGGGGCTTTGGATAC 59.525 60.000 0.00 0.00 0.00 2.24
2299 2341 1.148498 GGAGGGGGCTTTGGATACG 59.852 63.158 0.00 0.00 42.51 3.06
2300 2342 1.632965 GGAGGGGGCTTTGGATACGT 61.633 60.000 0.00 0.00 42.51 3.57
2301 2343 0.255033 GAGGGGGCTTTGGATACGTT 59.745 55.000 0.00 0.00 42.51 3.99
2302 2344 0.255033 AGGGGGCTTTGGATACGTTC 59.745 55.000 0.00 0.00 42.51 3.95
2305 2347 2.105993 GGGGGCTTTGGATACGTTCTAT 59.894 50.000 0.00 0.00 42.51 1.98
2306 2348 3.139077 GGGGCTTTGGATACGTTCTATG 58.861 50.000 0.00 0.00 42.51 2.23
2307 2349 3.181458 GGGGCTTTGGATACGTTCTATGA 60.181 47.826 0.00 0.00 42.51 2.15
2308 2350 4.448210 GGGCTTTGGATACGTTCTATGAA 58.552 43.478 0.00 0.00 42.51 2.57
2309 2351 4.879545 GGGCTTTGGATACGTTCTATGAAA 59.120 41.667 0.00 0.00 42.51 2.69
2310 2352 5.007724 GGGCTTTGGATACGTTCTATGAAAG 59.992 44.000 0.00 0.00 42.51 2.62
2311 2353 5.815740 GGCTTTGGATACGTTCTATGAAAGA 59.184 40.000 0.00 0.00 42.51 2.52
2312 2354 6.315393 GGCTTTGGATACGTTCTATGAAAGAA 59.685 38.462 0.00 0.00 40.28 2.52
2365 2407 7.972832 AAATCTGGTTGTTATTCGTTACTGA 57.027 32.000 0.00 0.00 0.00 3.41
2366 2408 7.596749 AATCTGGTTGTTATTCGTTACTGAG 57.403 36.000 0.00 0.00 0.00 3.35
2367 2409 6.092955 TCTGGTTGTTATTCGTTACTGAGT 57.907 37.500 0.00 0.00 0.00 3.41
2368 2410 5.924254 TCTGGTTGTTATTCGTTACTGAGTG 59.076 40.000 0.00 0.00 0.00 3.51
2369 2411 5.603596 TGGTTGTTATTCGTTACTGAGTGT 58.396 37.500 0.00 0.00 0.00 3.55
2370 2412 6.747125 TGGTTGTTATTCGTTACTGAGTGTA 58.253 36.000 0.00 0.00 0.00 2.90
2371 2413 7.380536 TGGTTGTTATTCGTTACTGAGTGTAT 58.619 34.615 0.00 0.00 0.00 2.29
2372 2414 7.874016 TGGTTGTTATTCGTTACTGAGTGTATT 59.126 33.333 0.00 0.00 0.00 1.89
2373 2415 8.378421 GGTTGTTATTCGTTACTGAGTGTATTC 58.622 37.037 0.00 0.00 0.00 1.75
2374 2416 9.136952 GTTGTTATTCGTTACTGAGTGTATTCT 57.863 33.333 0.00 0.00 0.00 2.40
2375 2417 8.683550 TGTTATTCGTTACTGAGTGTATTCTG 57.316 34.615 0.00 0.00 0.00 3.02
2376 2418 8.517056 TGTTATTCGTTACTGAGTGTATTCTGA 58.483 33.333 0.00 0.00 0.00 3.27
2377 2419 9.350357 GTTATTCGTTACTGAGTGTATTCTGAA 57.650 33.333 0.00 0.00 0.00 3.02
2378 2420 7.813852 ATTCGTTACTGAGTGTATTCTGAAC 57.186 36.000 0.00 0.00 0.00 3.18
2379 2421 5.388111 TCGTTACTGAGTGTATTCTGAACG 58.612 41.667 6.66 6.66 32.42 3.95
2380 2422 5.179929 TCGTTACTGAGTGTATTCTGAACGA 59.820 40.000 10.50 10.50 35.73 3.85
2381 2423 5.854866 CGTTACTGAGTGTATTCTGAACGAA 59.145 40.000 7.08 0.00 32.71 3.85
2382 2424 6.183359 CGTTACTGAGTGTATTCTGAACGAAC 60.183 42.308 7.08 0.00 32.71 3.95
2383 2425 4.557205 ACTGAGTGTATTCTGAACGAACC 58.443 43.478 0.00 0.00 33.72 3.62
2384 2426 4.038763 ACTGAGTGTATTCTGAACGAACCA 59.961 41.667 0.00 0.00 33.72 3.67
2385 2427 4.951254 TGAGTGTATTCTGAACGAACCAA 58.049 39.130 0.00 0.00 33.72 3.67
2386 2428 5.547465 TGAGTGTATTCTGAACGAACCAAT 58.453 37.500 0.00 0.00 33.72 3.16
2387 2429 5.995282 TGAGTGTATTCTGAACGAACCAATT 59.005 36.000 0.00 0.00 33.72 2.32
2388 2430 6.073276 TGAGTGTATTCTGAACGAACCAATTG 60.073 38.462 0.00 0.00 33.72 2.32
2389 2431 5.995282 AGTGTATTCTGAACGAACCAATTGA 59.005 36.000 7.12 0.00 33.72 2.57
2390 2432 6.485313 AGTGTATTCTGAACGAACCAATTGAA 59.515 34.615 7.12 0.00 33.72 2.69
2391 2433 6.797033 GTGTATTCTGAACGAACCAATTGAAG 59.203 38.462 7.12 0.00 33.72 3.02
2392 2434 6.485313 TGTATTCTGAACGAACCAATTGAAGT 59.515 34.615 7.12 0.00 33.72 3.01
2393 2435 7.658167 TGTATTCTGAACGAACCAATTGAAGTA 59.342 33.333 7.12 0.00 33.72 2.24
2394 2436 6.928979 TTCTGAACGAACCAATTGAAGTAA 57.071 33.333 7.12 0.00 0.00 2.24
2395 2437 6.539649 TCTGAACGAACCAATTGAAGTAAG 57.460 37.500 7.12 3.69 0.00 2.34
2396 2438 5.049680 TCTGAACGAACCAATTGAAGTAAGC 60.050 40.000 7.12 0.00 0.00 3.09
2397 2439 4.576873 TGAACGAACCAATTGAAGTAAGCA 59.423 37.500 7.12 0.00 0.00 3.91
2398 2440 5.066634 TGAACGAACCAATTGAAGTAAGCAA 59.933 36.000 7.12 0.00 0.00 3.91
2399 2441 5.508200 ACGAACCAATTGAAGTAAGCAAA 57.492 34.783 7.12 0.00 0.00 3.68
2400 2442 6.084326 ACGAACCAATTGAAGTAAGCAAAT 57.916 33.333 7.12 0.00 0.00 2.32
2401 2443 6.512297 ACGAACCAATTGAAGTAAGCAAATT 58.488 32.000 7.12 0.00 0.00 1.82
2402 2444 7.653647 ACGAACCAATTGAAGTAAGCAAATTA 58.346 30.769 7.12 0.00 0.00 1.40
2403 2445 8.138712 ACGAACCAATTGAAGTAAGCAAATTAA 58.861 29.630 7.12 0.00 0.00 1.40
2404 2446 8.973378 CGAACCAATTGAAGTAAGCAAATTAAA 58.027 29.630 7.12 0.00 0.00 1.52
2406 2448 9.606631 AACCAATTGAAGTAAGCAAATTAAACA 57.393 25.926 7.12 0.00 0.00 2.83
2407 2449 9.606631 ACCAATTGAAGTAAGCAAATTAAACAA 57.393 25.926 7.12 0.00 0.00 2.83
2413 2455 8.599774 TGAAGTAAGCAAATTAAACAAAACAGC 58.400 29.630 0.00 0.00 0.00 4.40
2414 2456 8.716646 AAGTAAGCAAATTAAACAAAACAGCT 57.283 26.923 0.00 0.00 0.00 4.24
2415 2457 9.810545 AAGTAAGCAAATTAAACAAAACAGCTA 57.189 25.926 0.00 0.00 0.00 3.32
2416 2458 9.981114 AGTAAGCAAATTAAACAAAACAGCTAT 57.019 25.926 0.00 0.00 0.00 2.97
2443 2485 6.910536 AGCTTTGGATACGTTCTATGAAAG 57.089 37.500 0.00 0.00 42.51 2.62
2445 2487 7.103641 AGCTTTGGATACGTTCTATGAAAGAA 58.896 34.615 0.00 0.00 40.28 2.52
2589 2631 8.040132 ACCATGTTAACCCATTTTGACATATTG 58.960 33.333 2.48 0.00 0.00 1.90
2605 2647 9.577110 TTGACATATTGAGTACGTACTAAAAGG 57.423 33.333 27.44 19.94 36.50 3.11
2607 2649 9.230932 GACATATTGAGTACGTACTAAAAGGTC 57.769 37.037 27.44 25.38 36.50 3.85
2630 2672 7.148069 GGTCATCTAAATGAACCCCAAACTTAG 60.148 40.741 0.00 0.00 42.78 2.18
2757 2799 7.237679 ACCTGGGCTCTAGAATATGCTAATTTA 59.762 37.037 0.00 0.00 0.00 1.40
2919 2961 7.728847 TGGTGCATTGTTAGTATCATGATAC 57.271 36.000 30.51 30.51 42.96 2.24
2935 2977 6.405538 TCATGATACAATCACTGCACTAACA 58.594 36.000 0.00 0.00 43.01 2.41
3256 3298 5.567138 ATGGAAATGTTAAGCTTCCTTCG 57.433 39.130 0.00 0.00 39.54 3.79
3348 3390 3.151912 ACTCAAGAAGCTGGATTTGCT 57.848 42.857 0.00 0.00 43.32 3.91
3404 3446 3.187022 GCTCATTGCAAAATGTCCAAACC 59.813 43.478 1.71 0.00 42.31 3.27
3409 3451 4.846779 TGCAAAATGTCCAAACCTACTC 57.153 40.909 0.00 0.00 0.00 2.59
3432 3474 3.910914 TTGCGGTAATGGCGGTGCT 62.911 57.895 0.00 0.00 0.00 4.40
3447 3489 3.242739 GCGGTGCTTGTACATTATGAAGG 60.243 47.826 0.00 0.00 0.00 3.46
3519 3563 2.644299 ACAGGTGAGGAATGTGATTGGA 59.356 45.455 0.00 0.00 0.00 3.53
3529 3573 6.090186 AGGAATGTGATTGGAGATAGAGGAT 58.910 40.000 0.00 0.00 0.00 3.24
3627 3671 0.325272 AAGAGGAAGGCGGAGTTTCC 59.675 55.000 0.00 0.00 41.44 3.13
3636 3680 0.611714 GCGGAGTTTCCCAAGTAGGA 59.388 55.000 0.00 0.00 41.22 2.94
3645 3689 1.822990 TCCCAAGTAGGACTAACAGCG 59.177 52.381 0.00 0.00 41.22 5.18
3708 3752 7.219322 CCTATGTGTCTGATATCACAAATGGA 58.781 38.462 0.00 0.00 45.51 3.41
3717 3761 0.329261 TCACAAATGGAGCCCTGGAG 59.671 55.000 0.00 0.00 0.00 3.86
3792 3836 5.240844 TGACAGACAAGAGACGATAACAGAA 59.759 40.000 0.00 0.00 0.00 3.02
3806 3850 0.957395 ACAGAATTGCCGCTGGACAG 60.957 55.000 0.00 0.00 36.47 3.51
3858 3902 1.807573 GCTTCGGAGGTTCGCTCTG 60.808 63.158 0.00 0.00 0.00 3.35
3915 3959 2.125147 TACATCGGGCAGCACAGC 60.125 61.111 0.00 0.00 0.00 4.40
3967 4011 2.125106 GGCAGACGGATGGTGGAC 60.125 66.667 0.00 0.00 0.00 4.02
4023 4067 0.321475 AGCTTGAACTGAGGAGCTGC 60.321 55.000 0.00 0.00 43.37 5.25
4080 4124 2.369394 CAAATGCCTTCCCTGAGGTAC 58.631 52.381 0.00 0.00 39.11 3.34
4203 4247 2.124695 GGCCGGGTGATGGAAGAC 60.125 66.667 2.18 0.00 0.00 3.01
4254 4298 1.035932 TGCTGGCGTACTACTCCCTC 61.036 60.000 0.00 0.00 0.00 4.30
4290 4334 0.033504 ACTACCCGCAGTCTGTTGTG 59.966 55.000 0.93 0.00 0.00 3.33
4309 4353 0.249238 GCCTCTGTATCCTGCGTGAG 60.249 60.000 0.00 0.00 0.00 3.51
4411 4457 7.582719 AGGATGTTTGTATGTGGGTATTGTAT 58.417 34.615 0.00 0.00 0.00 2.29
4412 4458 7.502226 AGGATGTTTGTATGTGGGTATTGTATG 59.498 37.037 0.00 0.00 0.00 2.39
4413 4459 7.255451 GGATGTTTGTATGTGGGTATTGTATGG 60.255 40.741 0.00 0.00 0.00 2.74
4414 4460 5.888724 TGTTTGTATGTGGGTATTGTATGGG 59.111 40.000 0.00 0.00 0.00 4.00
4415 4461 5.718801 TTGTATGTGGGTATTGTATGGGT 57.281 39.130 0.00 0.00 0.00 4.51
4416 4462 5.298989 TGTATGTGGGTATTGTATGGGTC 57.701 43.478 0.00 0.00 0.00 4.46
4481 4527 4.441356 CGCATTGGTATTTTTGCCTGGTAT 60.441 41.667 0.00 0.00 0.00 2.73
4482 4528 5.221145 CGCATTGGTATTTTTGCCTGGTATA 60.221 40.000 0.00 0.00 0.00 1.47
4483 4529 6.578023 GCATTGGTATTTTTGCCTGGTATAA 58.422 36.000 0.00 0.00 0.00 0.98
4497 4543 6.668283 TGCCTGGTATAACTCCTATCTAATCC 59.332 42.308 0.00 0.00 0.00 3.01
4508 4554 6.895204 ACTCCTATCTAATCCTAGGAAGATGC 59.105 42.308 26.52 0.00 42.22 3.91
4526 4576 7.167136 GGAAGATGCATACGTACTAAGTAACAC 59.833 40.741 0.00 0.00 0.00 3.32
4550 4600 1.554891 CGAGTGCAGCTGTGACACTG 61.555 60.000 24.51 15.06 39.58 3.66
4578 4628 0.453390 GCTTCGCAGGCATAAGCTTT 59.547 50.000 3.20 0.00 41.85 3.51
4620 4670 4.083802 GCGCAAGATTTTCTCTGTTGTACT 60.084 41.667 0.30 0.00 43.02 2.73
4622 4672 6.526222 CGCAAGATTTTCTCTGTTGTACTAC 58.474 40.000 0.05 0.05 43.02 2.73
4623 4673 6.145534 CGCAAGATTTTCTCTGTTGTACTACA 59.854 38.462 9.77 9.77 43.02 2.74
4633 4826 6.603599 TCTCTGTTGTACTACATGTAGATGCT 59.396 38.462 34.16 17.36 36.97 3.79
4635 4828 5.902681 TGTTGTACTACATGTAGATGCTCC 58.097 41.667 34.16 18.53 36.97 4.70
4640 4833 0.179073 ACATGTAGATGCTCCGCCAC 60.179 55.000 0.00 0.00 32.14 5.01
4703 4896 0.804933 CGGTAGTTCTACGCCAAGCC 60.805 60.000 4.26 0.00 0.00 4.35
4776 5037 3.432051 GACAGCGATCCAGGACCGG 62.432 68.421 5.02 0.00 0.00 5.28
4787 5048 2.511600 GGACCGGCGGATGAACTG 60.512 66.667 35.78 2.92 0.00 3.16
4827 5088 5.349817 CCACAGTTCTGTGATTGATCAGTAC 59.650 44.000 27.70 0.00 42.02 2.73
4828 5089 6.162079 CACAGTTCTGTGATTGATCAGTACT 58.838 40.000 23.45 0.00 40.85 2.73
4829 5090 6.644191 CAGTTCTGTGATTGATCAGTACTG 57.356 41.667 17.17 17.17 45.66 2.74
4830 5091 6.162079 CAGTTCTGTGATTGATCAGTACTGT 58.838 40.000 21.99 9.95 45.73 3.55
4831 5092 7.315890 CAGTTCTGTGATTGATCAGTACTGTA 58.684 38.462 21.99 9.79 45.73 2.74
4858 5326 1.068121 AGCCCAGGAAACAAGCTAGT 58.932 50.000 0.00 0.00 31.50 2.57
4941 5409 4.886009 CGTATGTATCCACGTAATGCAG 57.114 45.455 0.00 0.00 33.56 4.41
4996 5464 6.925718 CGTGCTCCAAAGATAGAAGAATATCA 59.074 38.462 0.00 0.00 35.07 2.15
5045 5513 1.002366 CAACTGCATCTACCAGTCGC 58.998 55.000 0.00 0.00 42.37 5.19
5085 5553 0.652592 CTACCGGCGCAAATCAAGAG 59.347 55.000 10.83 0.00 0.00 2.85
5111 5579 2.879002 TGCCTTTCATCAAACGCAAA 57.121 40.000 0.00 0.00 32.57 3.68
5112 5580 3.383620 TGCCTTTCATCAAACGCAAAT 57.616 38.095 0.00 0.00 32.57 2.32
5113 5581 3.316283 TGCCTTTCATCAAACGCAAATC 58.684 40.909 0.00 0.00 32.57 2.17
5114 5582 2.667969 GCCTTTCATCAAACGCAAATCC 59.332 45.455 0.00 0.00 0.00 3.01
5115 5583 3.860378 GCCTTTCATCAAACGCAAATCCA 60.860 43.478 0.00 0.00 0.00 3.41
5116 5584 4.305769 CCTTTCATCAAACGCAAATCCAA 58.694 39.130 0.00 0.00 0.00 3.53
5117 5585 4.150451 CCTTTCATCAAACGCAAATCCAAC 59.850 41.667 0.00 0.00 0.00 3.77
5118 5586 2.927429 TCATCAAACGCAAATCCAACG 58.073 42.857 0.00 0.00 0.00 4.10
5119 5587 1.386412 CATCAAACGCAAATCCAACGC 59.614 47.619 0.00 0.00 0.00 4.84
5123 5591 4.397090 CGCAAATCCAACGCGCCA 62.397 61.111 5.73 0.00 42.79 5.69
5124 5592 2.049618 GCAAATCCAACGCGCCAA 60.050 55.556 5.73 0.00 0.00 4.52
5125 5593 2.371923 GCAAATCCAACGCGCCAAC 61.372 57.895 5.73 0.00 0.00 3.77
5126 5594 1.732683 CAAATCCAACGCGCCAACC 60.733 57.895 5.73 0.00 0.00 3.77
5127 5595 1.901464 AAATCCAACGCGCCAACCT 60.901 52.632 5.73 0.00 0.00 3.50
5128 5596 0.606944 AAATCCAACGCGCCAACCTA 60.607 50.000 5.73 0.00 0.00 3.08
5129 5597 1.024579 AATCCAACGCGCCAACCTAG 61.025 55.000 5.73 0.00 0.00 3.02
5130 5598 1.895020 ATCCAACGCGCCAACCTAGA 61.895 55.000 5.73 0.00 0.00 2.43
5131 5599 1.449601 CCAACGCGCCAACCTAGAT 60.450 57.895 5.73 0.00 0.00 1.98
5132 5600 1.024579 CCAACGCGCCAACCTAGATT 61.025 55.000 5.73 0.00 0.00 2.40
5133 5601 0.096976 CAACGCGCCAACCTAGATTG 59.903 55.000 5.73 0.00 0.00 2.67
5134 5602 0.321298 AACGCGCCAACCTAGATTGT 60.321 50.000 5.73 0.00 0.00 2.71
5135 5603 0.739813 ACGCGCCAACCTAGATTGTC 60.740 55.000 5.73 0.00 0.00 3.18
5136 5604 1.429148 CGCGCCAACCTAGATTGTCC 61.429 60.000 0.00 0.00 0.00 4.02
5137 5605 0.392461 GCGCCAACCTAGATTGTCCA 60.392 55.000 0.00 0.00 0.00 4.02
5138 5606 1.747206 GCGCCAACCTAGATTGTCCAT 60.747 52.381 0.00 0.00 0.00 3.41
5139 5607 1.942657 CGCCAACCTAGATTGTCCATG 59.057 52.381 0.00 0.00 0.00 3.66
5140 5608 2.680805 CGCCAACCTAGATTGTCCATGT 60.681 50.000 0.00 0.00 0.00 3.21
5141 5609 2.684881 GCCAACCTAGATTGTCCATGTG 59.315 50.000 0.00 0.00 0.00 3.21
5142 5610 3.873801 GCCAACCTAGATTGTCCATGTGT 60.874 47.826 0.00 0.00 0.00 3.72
5143 5611 3.691118 CCAACCTAGATTGTCCATGTGTG 59.309 47.826 0.00 0.00 0.00 3.82
5144 5612 4.326826 CAACCTAGATTGTCCATGTGTGT 58.673 43.478 0.00 0.00 0.00 3.72
5145 5613 4.207891 ACCTAGATTGTCCATGTGTGTC 57.792 45.455 0.00 0.00 0.00 3.67
5146 5614 3.840666 ACCTAGATTGTCCATGTGTGTCT 59.159 43.478 0.00 0.00 0.00 3.41
5147 5615 4.186926 CCTAGATTGTCCATGTGTGTCTG 58.813 47.826 0.00 0.00 0.00 3.51
5148 5616 3.777106 AGATTGTCCATGTGTGTCTGT 57.223 42.857 0.00 0.00 0.00 3.41
5149 5617 4.090761 AGATTGTCCATGTGTGTCTGTT 57.909 40.909 0.00 0.00 0.00 3.16
5150 5618 4.464008 AGATTGTCCATGTGTGTCTGTTT 58.536 39.130 0.00 0.00 0.00 2.83
5151 5619 5.620206 AGATTGTCCATGTGTGTCTGTTTA 58.380 37.500 0.00 0.00 0.00 2.01
5152 5620 6.240894 AGATTGTCCATGTGTGTCTGTTTAT 58.759 36.000 0.00 0.00 0.00 1.40
5153 5621 5.687770 TTGTCCATGTGTGTCTGTTTATG 57.312 39.130 0.00 0.00 0.00 1.90
5154 5622 4.713553 TGTCCATGTGTGTCTGTTTATGT 58.286 39.130 0.00 0.00 0.00 2.29
5155 5623 4.754618 TGTCCATGTGTGTCTGTTTATGTC 59.245 41.667 0.00 0.00 0.00 3.06
5156 5624 4.154195 GTCCATGTGTGTCTGTTTATGTCC 59.846 45.833 0.00 0.00 0.00 4.02
5157 5625 4.071423 CCATGTGTGTCTGTTTATGTCCA 58.929 43.478 0.00 0.00 0.00 4.02
5158 5626 4.518590 CCATGTGTGTCTGTTTATGTCCAA 59.481 41.667 0.00 0.00 0.00 3.53
5159 5627 5.335113 CCATGTGTGTCTGTTTATGTCCAAG 60.335 44.000 0.00 0.00 0.00 3.61
5160 5628 3.563808 TGTGTGTCTGTTTATGTCCAAGC 59.436 43.478 0.00 0.00 0.00 4.01
5161 5629 2.805671 TGTGTCTGTTTATGTCCAAGCG 59.194 45.455 0.00 0.00 0.00 4.68
5162 5630 2.159627 GTGTCTGTTTATGTCCAAGCGG 59.840 50.000 0.00 0.00 0.00 5.52
5163 5631 2.037902 TGTCTGTTTATGTCCAAGCGGA 59.962 45.455 0.00 0.00 39.79 5.54
5164 5632 3.270877 GTCTGTTTATGTCCAAGCGGAT 58.729 45.455 0.00 0.00 45.33 4.18
5165 5633 4.081365 TGTCTGTTTATGTCCAAGCGGATA 60.081 41.667 0.00 0.00 45.33 2.59
5166 5634 4.873827 GTCTGTTTATGTCCAAGCGGATAA 59.126 41.667 0.00 0.00 45.33 1.75
5167 5635 5.353123 GTCTGTTTATGTCCAAGCGGATAAA 59.647 40.000 0.00 0.00 45.33 1.40
5168 5636 5.941058 TCTGTTTATGTCCAAGCGGATAAAA 59.059 36.000 0.00 0.00 45.33 1.52
5169 5637 6.431543 TCTGTTTATGTCCAAGCGGATAAAAA 59.568 34.615 0.00 0.00 45.33 1.94
5170 5638 6.383415 TGTTTATGTCCAAGCGGATAAAAAC 58.617 36.000 0.00 0.00 45.33 2.43
5171 5639 6.016192 TGTTTATGTCCAAGCGGATAAAAACA 60.016 34.615 11.18 11.18 45.33 2.83
5172 5640 3.907894 TGTCCAAGCGGATAAAAACAC 57.092 42.857 0.00 0.00 45.33 3.32
5173 5641 2.554893 TGTCCAAGCGGATAAAAACACC 59.445 45.455 0.00 0.00 45.33 4.16
5174 5642 2.413634 GTCCAAGCGGATAAAAACACCG 60.414 50.000 0.00 0.00 45.33 4.94
5175 5643 1.135517 CCAAGCGGATAAAAACACCGG 60.136 52.381 0.00 0.00 45.66 5.28
5176 5644 0.524414 AAGCGGATAAAAACACCGGC 59.476 50.000 0.00 0.00 45.66 6.13
5177 5645 0.322187 AGCGGATAAAAACACCGGCT 60.322 50.000 0.00 0.00 45.66 5.52
5178 5646 0.098200 GCGGATAAAAACACCGGCTC 59.902 55.000 0.00 0.00 45.66 4.70
5179 5647 1.444836 CGGATAAAAACACCGGCTCA 58.555 50.000 0.00 0.00 42.48 4.26
5180 5648 1.807742 CGGATAAAAACACCGGCTCAA 59.192 47.619 0.00 0.00 42.48 3.02
5181 5649 2.422127 CGGATAAAAACACCGGCTCAAT 59.578 45.455 0.00 0.00 42.48 2.57
5182 5650 3.730662 CGGATAAAAACACCGGCTCAATG 60.731 47.826 0.00 0.00 42.48 2.82
5183 5651 3.192633 GGATAAAAACACCGGCTCAATGT 59.807 43.478 0.00 0.00 0.00 2.71
5184 5652 2.507339 AAAAACACCGGCTCAATGTG 57.493 45.000 0.00 0.00 36.11 3.21
5185 5653 0.031994 AAAACACCGGCTCAATGTGC 59.968 50.000 0.00 0.00 33.30 4.57
5186 5654 0.823356 AAACACCGGCTCAATGTGCT 60.823 50.000 0.00 0.00 33.30 4.40
5187 5655 1.518056 AACACCGGCTCAATGTGCTG 61.518 55.000 0.00 8.98 36.63 4.41
5188 5656 1.672030 CACCGGCTCAATGTGCTGA 60.672 57.895 16.69 0.00 38.99 4.26
5189 5657 1.672356 ACCGGCTCAATGTGCTGAC 60.672 57.895 16.69 0.00 38.99 3.51
5190 5658 2.401766 CCGGCTCAATGTGCTGACC 61.402 63.158 16.69 0.00 38.99 4.02
5191 5659 2.401766 CGGCTCAATGTGCTGACCC 61.402 63.158 10.30 0.00 38.99 4.46
5192 5660 1.303561 GGCTCAATGTGCTGACCCA 60.304 57.895 7.25 0.00 0.00 4.51
5193 5661 0.895100 GGCTCAATGTGCTGACCCAA 60.895 55.000 7.25 0.00 0.00 4.12
5194 5662 0.961019 GCTCAATGTGCTGACCCAAA 59.039 50.000 0.00 0.00 0.00 3.28
5195 5663 1.336240 GCTCAATGTGCTGACCCAAAC 60.336 52.381 0.00 0.00 0.00 2.93
5196 5664 1.955778 CTCAATGTGCTGACCCAAACA 59.044 47.619 0.00 0.00 0.00 2.83
5197 5665 1.680735 TCAATGTGCTGACCCAAACAC 59.319 47.619 0.00 0.00 0.00 3.32
5198 5666 1.408340 CAATGTGCTGACCCAAACACA 59.592 47.619 0.00 0.00 46.16 3.72
5199 5667 1.774110 ATGTGCTGACCCAAACACAA 58.226 45.000 0.00 0.00 45.33 3.33
5200 5668 1.550327 TGTGCTGACCCAAACACAAA 58.450 45.000 0.00 0.00 39.91 2.83
5201 5669 1.895798 TGTGCTGACCCAAACACAAAA 59.104 42.857 0.00 0.00 39.91 2.44
5202 5670 2.094286 TGTGCTGACCCAAACACAAAAG 60.094 45.455 0.00 0.00 39.91 2.27
5203 5671 2.094234 GTGCTGACCCAAACACAAAAGT 60.094 45.455 0.00 0.00 33.23 2.66
5204 5672 2.165437 TGCTGACCCAAACACAAAAGTC 59.835 45.455 0.00 0.00 0.00 3.01
5205 5673 2.794631 GCTGACCCAAACACAAAAGTCG 60.795 50.000 0.00 0.00 0.00 4.18
5206 5674 2.422127 CTGACCCAAACACAAAAGTCGT 59.578 45.455 0.00 0.00 0.00 4.34
5207 5675 2.420722 TGACCCAAACACAAAAGTCGTC 59.579 45.455 0.00 0.00 0.00 4.20
5208 5676 1.746787 ACCCAAACACAAAAGTCGTCC 59.253 47.619 0.00 0.00 0.00 4.79
5209 5677 1.268335 CCCAAACACAAAAGTCGTCCG 60.268 52.381 0.00 0.00 0.00 4.79
5210 5678 1.462791 CAAACACAAAAGTCGTCCGC 58.537 50.000 0.00 0.00 0.00 5.54
5211 5679 1.063469 CAAACACAAAAGTCGTCCGCT 59.937 47.619 0.00 0.00 0.00 5.52
5212 5680 0.935196 AACACAAAAGTCGTCCGCTC 59.065 50.000 0.00 0.00 0.00 5.03
5213 5681 0.179094 ACACAAAAGTCGTCCGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
5214 5682 1.148310 CACAAAAGTCGTCCGCTCAT 58.852 50.000 0.00 0.00 0.00 2.90
5215 5683 1.531149 CACAAAAGTCGTCCGCTCATT 59.469 47.619 0.00 0.00 0.00 2.57
5216 5684 1.531149 ACAAAAGTCGTCCGCTCATTG 59.469 47.619 0.00 0.00 0.00 2.82
5217 5685 1.531149 CAAAAGTCGTCCGCTCATTGT 59.469 47.619 0.00 0.00 0.00 2.71
5218 5686 1.878953 AAAGTCGTCCGCTCATTGTT 58.121 45.000 0.00 0.00 0.00 2.83
5219 5687 1.429463 AAGTCGTCCGCTCATTGTTC 58.571 50.000 0.00 0.00 0.00 3.18
5220 5688 0.732880 AGTCGTCCGCTCATTGTTCG 60.733 55.000 0.00 0.00 0.00 3.95
5221 5689 1.007336 GTCGTCCGCTCATTGTTCGT 61.007 55.000 0.00 0.00 0.00 3.85
5222 5690 0.731514 TCGTCCGCTCATTGTTCGTC 60.732 55.000 0.00 0.00 0.00 4.20
5223 5691 0.732880 CGTCCGCTCATTGTTCGTCT 60.733 55.000 0.00 0.00 0.00 4.18
5224 5692 0.716108 GTCCGCTCATTGTTCGTCTG 59.284 55.000 0.00 0.00 0.00 3.51
5225 5693 0.389817 TCCGCTCATTGTTCGTCTGG 60.390 55.000 0.00 0.00 0.00 3.86
5226 5694 0.389817 CCGCTCATTGTTCGTCTGGA 60.390 55.000 0.00 0.00 0.00 3.86
5227 5695 0.716108 CGCTCATTGTTCGTCTGGAC 59.284 55.000 0.00 0.00 0.00 4.02
5239 5707 1.668419 GTCTGGACGCATTTATGGCT 58.332 50.000 0.00 0.00 0.00 4.75
5240 5708 2.017049 GTCTGGACGCATTTATGGCTT 58.983 47.619 0.00 0.00 0.00 4.35
5241 5709 3.202906 GTCTGGACGCATTTATGGCTTA 58.797 45.455 0.00 0.00 0.00 3.09
5242 5710 3.625764 GTCTGGACGCATTTATGGCTTAA 59.374 43.478 0.00 0.00 0.00 1.85
5243 5711 4.095782 GTCTGGACGCATTTATGGCTTAAA 59.904 41.667 7.88 7.88 34.37 1.52
5244 5712 4.887071 TCTGGACGCATTTATGGCTTAAAT 59.113 37.500 11.41 11.41 40.41 1.40
5245 5713 5.359576 TCTGGACGCATTTATGGCTTAAATT 59.640 36.000 13.84 2.84 38.23 1.82
5246 5714 5.971763 TGGACGCATTTATGGCTTAAATTT 58.028 33.333 13.84 0.00 38.23 1.82
5247 5715 5.809562 TGGACGCATTTATGGCTTAAATTTG 59.190 36.000 13.84 11.81 38.23 2.32
5248 5716 5.276820 GGACGCATTTATGGCTTAAATTTGC 60.277 40.000 13.84 14.97 38.23 3.68
5249 5717 4.750121 CGCATTTATGGCTTAAATTTGCG 58.250 39.130 25.57 25.57 45.33 4.85
5250 5718 4.267452 CGCATTTATGGCTTAAATTTGCGT 59.733 37.500 27.81 6.98 45.42 5.24
5251 5719 5.554324 CGCATTTATGGCTTAAATTTGCGTC 60.554 40.000 27.81 11.55 45.42 5.19
5252 5720 5.276820 GCATTTATGGCTTAAATTTGCGTCC 60.277 40.000 13.84 0.00 38.23 4.79
5253 5721 2.559998 ATGGCTTAAATTTGCGTCCG 57.440 45.000 0.00 0.00 0.00 4.79
5254 5722 1.524848 TGGCTTAAATTTGCGTCCGA 58.475 45.000 0.00 0.00 0.00 4.55
5255 5723 2.088423 TGGCTTAAATTTGCGTCCGAT 58.912 42.857 0.00 0.00 0.00 4.18
5256 5724 2.490115 TGGCTTAAATTTGCGTCCGATT 59.510 40.909 0.00 0.00 0.00 3.34
5257 5725 3.057174 TGGCTTAAATTTGCGTCCGATTT 60.057 39.130 0.00 0.00 0.00 2.17
5258 5726 4.156190 TGGCTTAAATTTGCGTCCGATTTA 59.844 37.500 0.00 0.00 0.00 1.40
5259 5727 4.497966 GGCTTAAATTTGCGTCCGATTTAC 59.502 41.667 0.00 0.00 0.00 2.01
5260 5728 4.201558 GCTTAAATTTGCGTCCGATTTACG 59.798 41.667 0.00 0.00 43.12 3.18
5261 5729 3.817148 AAATTTGCGTCCGATTTACGT 57.183 38.095 0.00 0.00 42.26 3.57
5262 5730 3.378959 AATTTGCGTCCGATTTACGTC 57.621 42.857 0.00 0.00 42.26 4.34
5263 5731 1.070038 TTTGCGTCCGATTTACGTCC 58.930 50.000 0.00 0.00 42.26 4.79
5264 5732 0.038435 TTGCGTCCGATTTACGTCCA 60.038 50.000 0.00 0.00 42.26 4.02
5265 5733 0.173935 TGCGTCCGATTTACGTCCAT 59.826 50.000 0.00 0.00 42.26 3.41
5266 5734 0.575390 GCGTCCGATTTACGTCCATG 59.425 55.000 0.00 0.00 42.26 3.66
5267 5735 1.917273 CGTCCGATTTACGTCCATGT 58.083 50.000 0.00 0.00 40.78 3.21
5268 5736 1.586578 CGTCCGATTTACGTCCATGTG 59.413 52.381 0.00 0.00 40.78 3.21
5269 5737 1.931172 GTCCGATTTACGTCCATGTGG 59.069 52.381 0.00 0.00 40.78 4.17
5270 5738 1.826096 TCCGATTTACGTCCATGTGGA 59.174 47.619 0.00 0.00 39.54 4.02
5280 5748 2.455674 TCCATGTGGAAACGAGACAG 57.544 50.000 0.00 0.00 42.18 3.51
5281 5749 1.967779 TCCATGTGGAAACGAGACAGA 59.032 47.619 0.00 0.00 42.18 3.41
5282 5750 2.069273 CCATGTGGAAACGAGACAGAC 58.931 52.381 0.00 0.00 37.39 3.51
5283 5751 1.721389 CATGTGGAAACGAGACAGACG 59.279 52.381 0.00 0.00 0.00 4.18
5284 5752 0.742505 TGTGGAAACGAGACAGACGT 59.257 50.000 0.00 0.00 45.89 4.34
5285 5753 1.129326 GTGGAAACGAGACAGACGTG 58.871 55.000 0.00 0.00 43.16 4.49
5286 5754 0.596600 TGGAAACGAGACAGACGTGC 60.597 55.000 0.00 0.00 43.16 5.34
5287 5755 1.282930 GGAAACGAGACAGACGTGCC 61.283 60.000 0.00 0.00 43.16 5.01
5288 5756 1.606350 GAAACGAGACAGACGTGCCG 61.606 60.000 0.00 0.00 43.16 5.69
5289 5757 2.345880 AAACGAGACAGACGTGCCGT 62.346 55.000 0.00 0.00 45.10 5.68
5290 5758 2.801162 CGAGACAGACGTGCCGTG 60.801 66.667 4.94 0.00 41.37 4.94
5291 5759 2.335369 GAGACAGACGTGCCGTGT 59.665 61.111 4.94 0.00 41.37 4.49
5295 5763 3.036084 CAGACGTGCCGTGTGTCC 61.036 66.667 14.02 0.00 44.21 4.02
5296 5764 4.640855 AGACGTGCCGTGTGTCCG 62.641 66.667 4.94 0.00 41.37 4.79
5304 5772 4.640855 CGTGTGTCCGCTCGGTGT 62.641 66.667 8.28 0.00 36.47 4.16
5305 5773 2.733593 GTGTGTCCGCTCGGTGTC 60.734 66.667 8.28 1.82 36.47 3.67
5306 5774 3.986006 TGTGTCCGCTCGGTGTCC 61.986 66.667 8.28 0.00 36.47 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.025280 CGGTTGGTAACTTTACAATATGCAC 58.975 40.000 0.00 0.00 35.37 4.57
24 25 8.313292 TCTGTATACGGTTGGTAACTTTACAAT 58.687 33.333 11.47 0.00 35.37 2.71
25 26 7.665690 TCTGTATACGGTTGGTAACTTTACAA 58.334 34.615 11.47 0.00 35.37 2.41
99 100 9.003658 CCACCTATAATTGCAAGGTAAAGATAG 57.996 37.037 6.71 4.88 41.75 2.08
100 101 7.447238 GCCACCTATAATTGCAAGGTAAAGATA 59.553 37.037 6.71 0.00 41.75 1.98
101 102 6.265422 GCCACCTATAATTGCAAGGTAAAGAT 59.735 38.462 6.71 0.00 41.75 2.40
102 103 5.592688 GCCACCTATAATTGCAAGGTAAAGA 59.407 40.000 6.71 0.00 41.75 2.52
103 104 5.359576 TGCCACCTATAATTGCAAGGTAAAG 59.640 40.000 6.71 1.31 41.75 1.85
104 105 5.265191 TGCCACCTATAATTGCAAGGTAAA 58.735 37.500 6.71 0.00 41.75 2.01
105 106 4.861196 TGCCACCTATAATTGCAAGGTAA 58.139 39.130 6.71 0.00 41.75 2.85
106 107 4.511786 TGCCACCTATAATTGCAAGGTA 57.488 40.909 6.71 1.07 41.75 3.08
107 108 3.380471 TGCCACCTATAATTGCAAGGT 57.620 42.857 4.94 2.76 44.54 3.50
108 109 4.826733 TGTATGCCACCTATAATTGCAAGG 59.173 41.667 4.94 2.00 35.30 3.61
109 110 6.579666 ATGTATGCCACCTATAATTGCAAG 57.420 37.500 4.94 0.00 35.30 4.01
110 111 6.975196 AATGTATGCCACCTATAATTGCAA 57.025 33.333 0.00 0.00 35.30 4.08
111 112 6.975196 AAATGTATGCCACCTATAATTGCA 57.025 33.333 0.00 0.00 36.23 4.08
112 113 9.410556 CTTTAAATGTATGCCACCTATAATTGC 57.589 33.333 0.00 0.00 0.00 3.56
160 166 4.449068 CGCTTGAAGTATATTTGGCTCGAT 59.551 41.667 0.00 0.00 0.00 3.59
163 169 5.734855 TTCGCTTGAAGTATATTTGGCTC 57.265 39.130 0.00 0.00 0.00 4.70
216 222 8.877779 CGATTAATTCTATTCTTATCCTGGCAG 58.122 37.037 7.75 7.75 0.00 4.85
233 239 6.945072 AGGTCGTTTTAGCATCGATTAATTC 58.055 36.000 0.00 0.00 36.08 2.17
254 260 0.471211 TTGTGAACGGAGGGAGAGGT 60.471 55.000 0.00 0.00 0.00 3.85
255 261 0.685097 TTTGTGAACGGAGGGAGAGG 59.315 55.000 0.00 0.00 0.00 3.69
256 262 2.770164 ATTTGTGAACGGAGGGAGAG 57.230 50.000 0.00 0.00 0.00 3.20
257 263 5.188163 TGTTATATTTGTGAACGGAGGGAGA 59.812 40.000 0.00 0.00 0.00 3.71
321 327 7.922278 CGGAATGGATGAACAAATACATCAAAT 59.078 33.333 0.00 0.00 42.95 2.32
340 346 1.684983 ACTACATACGGACCGGAATGG 59.315 52.381 25.97 13.78 46.41 3.16
364 370 9.381033 TGCTAAAATGGTTTGGATATTTCAATG 57.619 29.630 0.00 0.00 0.00 2.82
375 381 7.605691 TCATAATTTGGTGCTAAAATGGTTTGG 59.394 33.333 0.00 0.00 0.00 3.28
384 390 6.098124 CCCTCCATTCATAATTTGGTGCTAAA 59.902 38.462 0.00 0.00 0.00 1.85
388 394 3.960102 TCCCTCCATTCATAATTTGGTGC 59.040 43.478 0.00 0.00 0.00 5.01
392 398 3.254166 CCGCTCCCTCCATTCATAATTTG 59.746 47.826 0.00 0.00 0.00 2.32
403 409 2.424842 AAAATGCACCGCTCCCTCCA 62.425 55.000 0.00 0.00 0.00 3.86
412 418 3.601443 TTTATCCCCAAAAATGCACCG 57.399 42.857 0.00 0.00 0.00 4.94
413 419 4.905429 ACTTTTATCCCCAAAAATGCACC 58.095 39.130 0.00 0.00 0.00 5.01
414 420 7.971183 TTAACTTTTATCCCCAAAAATGCAC 57.029 32.000 0.00 0.00 0.00 4.57
438 444 6.399639 ACGTCAATTGGTTTTATCCTTGTT 57.600 33.333 5.42 0.00 0.00 2.83
455 461 3.354467 AGTGGTTGGGTTTTAACGTCAA 58.646 40.909 0.00 0.00 0.00 3.18
456 462 3.002038 AGTGGTTGGGTTTTAACGTCA 57.998 42.857 0.00 0.00 0.00 4.35
457 463 4.374843 AAAGTGGTTGGGTTTTAACGTC 57.625 40.909 0.00 0.00 0.00 4.34
476 482 3.891422 TCCTAGATTTACCGCCGAAAA 57.109 42.857 0.00 0.00 0.00 2.29
484 490 5.224135 GCGTCTCTTGATCCTAGATTTACC 58.776 45.833 0.00 0.00 0.00 2.85
494 501 0.532573 TCAGTGGCGTCTCTTGATCC 59.467 55.000 0.00 0.00 0.00 3.36
519 526 1.234615 TTGCACCTTTCCAGTAGCGC 61.235 55.000 0.00 0.00 0.00 5.92
521 528 1.168714 CCTTGCACCTTTCCAGTAGC 58.831 55.000 0.00 0.00 0.00 3.58
522 529 1.168714 GCCTTGCACCTTTCCAGTAG 58.831 55.000 0.00 0.00 0.00 2.57
523 530 0.771127 AGCCTTGCACCTTTCCAGTA 59.229 50.000 0.00 0.00 0.00 2.74
527 534 0.529378 CATGAGCCTTGCACCTTTCC 59.471 55.000 0.00 0.00 0.00 3.13
539 546 2.554142 TGTCGATCATTGTCATGAGCC 58.446 47.619 0.00 0.00 42.01 4.70
603 610 1.396653 GATGATGGTGGCCTTGAAGG 58.603 55.000 6.92 6.92 38.80 3.46
800 829 2.689034 GGGAGGGAGGAGTGTGGG 60.689 72.222 0.00 0.00 0.00 4.61
803 832 2.781406 GGAGGGAGGGAGGAGTGT 59.219 66.667 0.00 0.00 0.00 3.55
809 838 4.101077 AGGCAGGGAGGGAGGGAG 62.101 72.222 0.00 0.00 0.00 4.30
810 839 4.095400 GAGGCAGGGAGGGAGGGA 62.095 72.222 0.00 0.00 0.00 4.20
812 841 3.817614 TATTGGAGGCAGGGAGGGAGG 62.818 61.905 0.00 0.00 0.00 4.30
823 856 5.071653 AGGAGAGAAGAGAATTATTGGAGGC 59.928 44.000 0.00 0.00 0.00 4.70
863 896 4.386951 TCCGATGGTGGTGGTGCG 62.387 66.667 0.00 0.00 0.00 5.34
864 897 2.436646 CTCCGATGGTGGTGGTGC 60.437 66.667 0.00 0.00 0.00 5.01
865 898 0.036164 TTTCTCCGATGGTGGTGGTG 59.964 55.000 0.00 0.00 0.00 4.17
866 899 0.768622 TTTTCTCCGATGGTGGTGGT 59.231 50.000 0.00 0.00 0.00 4.16
867 900 1.453155 CTTTTCTCCGATGGTGGTGG 58.547 55.000 0.00 0.00 0.00 4.61
898 931 3.421567 GGATTGATTTCCCTCCCCG 57.578 57.895 0.00 0.00 0.00 5.73
905 938 1.051008 GGGCATGGGGATTGATTTCC 58.949 55.000 0.00 0.00 34.83 3.13
906 939 1.051008 GGGGCATGGGGATTGATTTC 58.949 55.000 0.00 0.00 0.00 2.17
1538 1574 2.225255 CAGATCAGAGCGCGATAGAAGA 59.775 50.000 12.10 0.00 39.76 2.87
1541 1577 0.239613 GCAGATCAGAGCGCGATAGA 59.760 55.000 12.10 5.72 39.76 1.98
1591 1627 1.227674 GTATCCCTGCCTGGCGAAG 60.228 63.158 14.98 6.62 0.00 3.79
1596 1632 0.179000 GTCACTGTATCCCTGCCTGG 59.821 60.000 0.00 0.00 0.00 4.45
1597 1633 1.134580 CAGTCACTGTATCCCTGCCTG 60.135 57.143 0.00 0.00 0.00 4.85
1598 1634 1.198713 CAGTCACTGTATCCCTGCCT 58.801 55.000 0.00 0.00 0.00 4.75
1661 1698 0.886490 GGTGCTCTATCATTGCCCCG 60.886 60.000 0.00 0.00 0.00 5.73
1700 1737 5.285607 CGCCGTAGAACAAGTTTCTACTTAG 59.714 44.000 17.71 10.15 45.24 2.18
1744 1781 1.299014 GCGTCCAGATCTCGAGCTG 60.299 63.158 7.81 10.26 43.91 4.24
1747 1784 2.121538 TGGGCGTCCAGATCTCGAG 61.122 63.158 3.51 5.93 38.32 4.04
1774 1811 3.707793 GTTCATGCTAAGAGAGTACGGG 58.292 50.000 0.00 0.00 0.00 5.28
1785 1822 1.866601 CGCCATCATCGTTCATGCTAA 59.133 47.619 0.00 0.00 31.70 3.09
1804 1841 1.083806 TCTGCTTTGCTATGGTCGCG 61.084 55.000 0.00 0.00 0.00 5.87
1830 1867 0.249398 AGTAACTGTAAGCAGGGGCG 59.751 55.000 0.00 0.00 46.62 6.13
1849 1886 3.106054 AGCCATGCAAATTACCAATGGA 58.894 40.909 6.16 0.00 0.00 3.41
1850 1887 3.199677 CAGCCATGCAAATTACCAATGG 58.800 45.455 0.00 0.00 0.00 3.16
1851 1888 3.199677 CCAGCCATGCAAATTACCAATG 58.800 45.455 0.00 0.00 0.00 2.82
1852 1889 2.420408 GCCAGCCATGCAAATTACCAAT 60.420 45.455 0.00 0.00 0.00 3.16
1853 1890 1.066286 GCCAGCCATGCAAATTACCAA 60.066 47.619 0.00 0.00 0.00 3.67
1855 1892 0.528249 CGCCAGCCATGCAAATTACC 60.528 55.000 0.00 0.00 0.00 2.85
1856 1893 0.173255 ACGCCAGCCATGCAAATTAC 59.827 50.000 0.00 0.00 0.00 1.89
1857 1894 0.894141 AACGCCAGCCATGCAAATTA 59.106 45.000 0.00 0.00 0.00 1.40
1858 1895 0.390209 GAACGCCAGCCATGCAAATT 60.390 50.000 0.00 0.00 0.00 1.82
1946 1983 1.466167 CAACAACCGGAATGCAGAGAG 59.534 52.381 9.46 0.00 0.00 3.20
1947 1984 1.071542 TCAACAACCGGAATGCAGAGA 59.928 47.619 9.46 0.63 0.00 3.10
1980 2017 5.841957 ATAAATGCTGTGAAATGGACTCC 57.158 39.130 0.00 0.00 0.00 3.85
2049 2086 0.249911 GGCATCCGGCTACCTTACAG 60.250 60.000 0.00 0.00 44.01 2.74
2063 2100 5.163581 AGTCAATCACTATTGCTTTGGCATC 60.164 40.000 0.00 0.00 41.96 3.91
2191 2233 4.098044 CCTGACACTACGTGATATTGTCCT 59.902 45.833 0.00 0.00 40.89 3.85
2197 2239 3.380637 GTCACCCTGACACTACGTGATAT 59.619 47.826 0.00 0.00 46.22 1.63
2221 2263 6.547510 GGGAACTGAGAAAGGCATATAAACAT 59.452 38.462 0.00 0.00 0.00 2.71
2222 2264 5.885912 GGGAACTGAGAAAGGCATATAAACA 59.114 40.000 0.00 0.00 0.00 2.83
2223 2265 6.122964 AGGGAACTGAGAAAGGCATATAAAC 58.877 40.000 0.00 0.00 41.13 2.01
2224 2266 6.327386 AGGGAACTGAGAAAGGCATATAAA 57.673 37.500 0.00 0.00 41.13 1.40
2279 2321 0.474614 GTATCCAAAGCCCCCTCCTC 59.525 60.000 0.00 0.00 0.00 3.71
2280 2322 1.345715 CGTATCCAAAGCCCCCTCCT 61.346 60.000 0.00 0.00 0.00 3.69
2281 2323 1.148498 CGTATCCAAAGCCCCCTCC 59.852 63.158 0.00 0.00 0.00 4.30
2282 2324 0.255033 AACGTATCCAAAGCCCCCTC 59.745 55.000 0.00 0.00 0.00 4.30
2283 2325 0.255033 GAACGTATCCAAAGCCCCCT 59.745 55.000 0.00 0.00 0.00 4.79
2286 2328 4.067972 TCATAGAACGTATCCAAAGCCC 57.932 45.455 0.00 0.00 0.00 5.19
2287 2329 5.815740 TCTTTCATAGAACGTATCCAAAGCC 59.184 40.000 0.00 0.00 0.00 4.35
2288 2330 6.903883 TCTTTCATAGAACGTATCCAAAGC 57.096 37.500 0.00 0.00 0.00 3.51
2339 2381 9.661563 TCAGTAACGAATAACAACCAGATTTAT 57.338 29.630 0.00 0.00 0.00 1.40
2340 2382 9.146984 CTCAGTAACGAATAACAACCAGATTTA 57.853 33.333 0.00 0.00 0.00 1.40
2341 2383 7.660208 ACTCAGTAACGAATAACAACCAGATTT 59.340 33.333 0.00 0.00 0.00 2.17
2342 2384 7.117812 CACTCAGTAACGAATAACAACCAGATT 59.882 37.037 0.00 0.00 0.00 2.40
2343 2385 6.590292 CACTCAGTAACGAATAACAACCAGAT 59.410 38.462 0.00 0.00 0.00 2.90
2344 2386 5.924254 CACTCAGTAACGAATAACAACCAGA 59.076 40.000 0.00 0.00 0.00 3.86
2345 2387 5.694910 ACACTCAGTAACGAATAACAACCAG 59.305 40.000 0.00 0.00 0.00 4.00
2346 2388 5.603596 ACACTCAGTAACGAATAACAACCA 58.396 37.500 0.00 0.00 0.00 3.67
2347 2389 7.823149 ATACACTCAGTAACGAATAACAACC 57.177 36.000 0.00 0.00 36.05 3.77
2348 2390 9.136952 AGAATACACTCAGTAACGAATAACAAC 57.863 33.333 0.00 0.00 36.05 3.32
2349 2391 9.135843 CAGAATACACTCAGTAACGAATAACAA 57.864 33.333 0.00 0.00 36.05 2.83
2350 2392 8.517056 TCAGAATACACTCAGTAACGAATAACA 58.483 33.333 0.00 0.00 36.05 2.41
2351 2393 8.906636 TCAGAATACACTCAGTAACGAATAAC 57.093 34.615 0.00 0.00 36.05 1.89
2352 2394 9.350357 GTTCAGAATACACTCAGTAACGAATAA 57.650 33.333 0.00 0.00 36.05 1.40
2353 2395 7.695201 CGTTCAGAATACACTCAGTAACGAATA 59.305 37.037 0.00 0.00 33.52 1.75
2354 2396 6.527023 CGTTCAGAATACACTCAGTAACGAAT 59.473 38.462 0.00 0.00 33.52 3.34
2355 2397 5.854866 CGTTCAGAATACACTCAGTAACGAA 59.145 40.000 0.00 0.00 33.52 3.85
2356 2398 5.179929 TCGTTCAGAATACACTCAGTAACGA 59.820 40.000 4.24 4.24 36.61 3.85
2357 2399 5.388111 TCGTTCAGAATACACTCAGTAACG 58.612 41.667 0.00 0.00 36.05 3.18
2358 2400 6.089150 GGTTCGTTCAGAATACACTCAGTAAC 59.911 42.308 0.00 0.00 41.49 2.50
2359 2401 6.154445 GGTTCGTTCAGAATACACTCAGTAA 58.846 40.000 0.00 0.00 41.49 2.24
2360 2402 5.242171 TGGTTCGTTCAGAATACACTCAGTA 59.758 40.000 0.00 0.00 41.49 2.74
2361 2403 4.038763 TGGTTCGTTCAGAATACACTCAGT 59.961 41.667 0.00 0.00 41.49 3.41
2362 2404 4.556233 TGGTTCGTTCAGAATACACTCAG 58.444 43.478 0.00 0.00 41.49 3.35
2363 2405 4.594123 TGGTTCGTTCAGAATACACTCA 57.406 40.909 0.00 0.00 41.49 3.41
2364 2406 6.147164 TCAATTGGTTCGTTCAGAATACACTC 59.853 38.462 5.42 0.00 41.49 3.51
2365 2407 5.995282 TCAATTGGTTCGTTCAGAATACACT 59.005 36.000 5.42 0.00 41.49 3.55
2366 2408 6.236017 TCAATTGGTTCGTTCAGAATACAC 57.764 37.500 5.42 0.00 41.49 2.90
2367 2409 6.485313 ACTTCAATTGGTTCGTTCAGAATACA 59.515 34.615 5.42 0.00 41.49 2.29
2368 2410 6.899114 ACTTCAATTGGTTCGTTCAGAATAC 58.101 36.000 5.42 0.00 41.49 1.89
2369 2411 8.610248 TTACTTCAATTGGTTCGTTCAGAATA 57.390 30.769 5.42 0.00 41.49 1.75
2370 2412 7.504924 TTACTTCAATTGGTTCGTTCAGAAT 57.495 32.000 5.42 0.00 41.49 2.40
2371 2413 6.512741 GCTTACTTCAATTGGTTCGTTCAGAA 60.513 38.462 5.42 0.00 36.31 3.02
2372 2414 5.049680 GCTTACTTCAATTGGTTCGTTCAGA 60.050 40.000 5.42 0.00 0.00 3.27
2373 2415 5.147162 GCTTACTTCAATTGGTTCGTTCAG 58.853 41.667 5.42 0.44 0.00 3.02
2374 2416 4.576873 TGCTTACTTCAATTGGTTCGTTCA 59.423 37.500 5.42 0.00 0.00 3.18
2375 2417 5.103290 TGCTTACTTCAATTGGTTCGTTC 57.897 39.130 5.42 0.00 0.00 3.95
2376 2418 5.508200 TTGCTTACTTCAATTGGTTCGTT 57.492 34.783 5.42 0.00 0.00 3.85
2377 2419 5.508200 TTTGCTTACTTCAATTGGTTCGT 57.492 34.783 5.42 0.85 0.00 3.85
2378 2420 8.514136 TTAATTTGCTTACTTCAATTGGTTCG 57.486 30.769 5.42 0.00 0.00 3.95
2380 2422 9.606631 TGTTTAATTTGCTTACTTCAATTGGTT 57.393 25.926 5.42 0.00 0.00 3.67
2381 2423 9.606631 TTGTTTAATTTGCTTACTTCAATTGGT 57.393 25.926 5.42 0.00 0.00 3.67
2387 2429 8.599774 GCTGTTTTGTTTAATTTGCTTACTTCA 58.400 29.630 0.00 0.00 0.00 3.02
2388 2430 8.817100 AGCTGTTTTGTTTAATTTGCTTACTTC 58.183 29.630 0.00 0.00 0.00 3.01
2389 2431 8.716646 AGCTGTTTTGTTTAATTTGCTTACTT 57.283 26.923 0.00 0.00 0.00 2.24
2390 2432 9.981114 ATAGCTGTTTTGTTTAATTTGCTTACT 57.019 25.926 0.00 0.00 0.00 2.24
2415 2457 8.958119 TCATAGAACGTATCCAAAGCTTAAAT 57.042 30.769 0.00 0.00 0.00 1.40
2416 2458 8.780846 TTCATAGAACGTATCCAAAGCTTAAA 57.219 30.769 0.00 0.00 0.00 1.52
2420 2462 6.640518 TCTTTCATAGAACGTATCCAAAGCT 58.359 36.000 0.00 0.00 0.00 3.74
2491 2533 6.089150 GGTTCGTTCAGAATACACTCAGTAAC 59.911 42.308 0.00 0.00 41.49 2.50
2605 2647 6.590234 AAGTTTGGGGTTCATTTAGATGAC 57.410 37.500 0.00 0.00 41.84 3.06
2607 2649 7.703058 ACTAAGTTTGGGGTTCATTTAGATG 57.297 36.000 0.00 0.00 34.46 2.90
2621 2663 7.145932 AGCATTTGTAGCTTACTAAGTTTGG 57.854 36.000 0.00 0.00 39.87 3.28
2796 2838 9.532494 TGTACCACAGTTCCTACTTATTAAGTA 57.468 33.333 14.11 14.11 42.81 2.24
2809 2851 5.751990 CGGACTATAAATGTACCACAGTTCC 59.248 44.000 0.00 0.00 37.58 3.62
2810 2852 6.335777 ACGGACTATAAATGTACCACAGTTC 58.664 40.000 0.00 0.00 37.58 3.01
2919 2961 3.916172 GCAACATGTTAGTGCAGTGATTG 59.084 43.478 11.53 1.21 0.00 2.67
2935 2977 2.553602 TCTGCTCAATTTCGTGCAACAT 59.446 40.909 0.00 0.00 35.19 2.71
3348 3390 3.035363 TCAGTGGTGAGGAAACTGTACA 58.965 45.455 0.00 0.00 44.43 2.90
3404 3446 2.858344 CCATTACCGCAAGAACGAGTAG 59.142 50.000 0.00 0.00 43.02 2.57
3409 3451 1.060308 CGCCATTACCGCAAGAACG 59.940 57.895 0.00 0.00 43.02 3.95
3447 3489 9.490663 CAATGAAAAAGATCGGTAGTTGAATAC 57.509 33.333 0.00 0.00 0.00 1.89
3481 3525 6.953101 TCACCTGTAAAGCACATTTAGGATA 58.047 36.000 0.00 0.00 36.29 2.59
3494 3538 5.124457 CCAATCACATTCCTCACCTGTAAAG 59.876 44.000 0.00 0.00 0.00 1.85
3519 3563 3.049344 GACAACCCCCAATCCTCTATCT 58.951 50.000 0.00 0.00 0.00 1.98
3529 3573 1.766864 TGTCTCCGACAACCCCCAA 60.767 57.895 0.00 0.00 39.78 4.12
3627 3671 3.802948 ATCGCTGTTAGTCCTACTTGG 57.197 47.619 0.00 0.00 37.10 3.61
3657 3701 1.021202 TGTTTTCCAGTTCACGGCAG 58.979 50.000 0.00 0.00 0.00 4.85
3708 3752 2.765807 CCGATGGACTCCAGGGCT 60.766 66.667 3.62 0.00 36.75 5.19
3717 3761 0.669318 TGCAGAACGTTCCGATGGAC 60.669 55.000 24.22 7.16 0.00 4.02
3741 3785 1.089920 CAAGGCGAAAGTCATGGAGG 58.910 55.000 0.00 0.00 38.99 4.30
3915 3959 1.439353 GCATGTACTGGATGGTGCCG 61.439 60.000 0.00 0.00 0.00 5.69
3918 3962 2.941064 CAGAAGCATGTACTGGATGGTG 59.059 50.000 0.00 0.00 31.98 4.17
3967 4011 1.699656 CCGGCTGCGAAACTGATCAG 61.700 60.000 21.37 21.37 0.00 2.90
4080 4124 4.015406 TAGCCCTGCACCCACACG 62.015 66.667 0.00 0.00 0.00 4.49
4192 4236 1.153349 GCTCCCCGTCTTCCATCAC 60.153 63.158 0.00 0.00 0.00 3.06
4221 4265 2.033757 AGCACCTGAGCTTGCCTG 59.966 61.111 4.49 0.00 43.70 4.85
4254 4298 0.323908 AGTCGGACCTCTTCCCAGAG 60.324 60.000 4.14 0.00 45.79 3.35
4290 4334 0.249238 CTCACGCAGGATACAGAGGC 60.249 60.000 0.00 0.00 41.41 4.70
4309 4353 6.484308 ACCATACCGGCTTAATGTATTTACAC 59.516 38.462 0.00 0.00 37.36 2.90
4360 4406 4.087892 GAGAAGCGCAGAGGGCCA 62.088 66.667 11.47 0.00 42.59 5.36
4363 4409 4.521062 CCCGAGAAGCGCAGAGGG 62.521 72.222 11.47 11.20 39.11 4.30
4411 4457 3.421394 AATCTACCAGATCCAGACCCA 57.579 47.619 0.00 0.00 32.89 4.51
4412 4458 4.410555 AGAAAATCTACCAGATCCAGACCC 59.589 45.833 0.00 0.00 32.89 4.46
4413 4459 5.622346 AGAAAATCTACCAGATCCAGACC 57.378 43.478 0.00 0.00 32.89 3.85
4414 4460 6.041523 AGCTAGAAAATCTACCAGATCCAGAC 59.958 42.308 0.00 0.00 32.89 3.51
4415 4461 6.041409 CAGCTAGAAAATCTACCAGATCCAGA 59.959 42.308 0.00 0.00 32.89 3.86
4416 4462 6.222389 CAGCTAGAAAATCTACCAGATCCAG 58.778 44.000 0.00 0.00 32.89 3.86
4481 4527 9.983024 CATCTTCCTAGGATTAGATAGGAGTTA 57.017 37.037 20.85 0.00 46.30 2.24
4482 4528 7.398904 GCATCTTCCTAGGATTAGATAGGAGTT 59.601 40.741 20.85 3.15 46.30 3.01
4483 4529 6.895204 GCATCTTCCTAGGATTAGATAGGAGT 59.105 42.308 20.85 1.93 46.30 3.85
4497 4543 7.204496 ACTTAGTACGTATGCATCTTCCTAG 57.796 40.000 0.19 0.00 0.00 3.02
4508 4554 5.226565 CGCACAGTGTTACTTAGTACGTATG 59.773 44.000 0.00 0.00 0.00 2.39
4526 4576 2.664185 ACAGCTGCACTCGCACAG 60.664 61.111 15.27 0.00 45.36 3.66
4539 4589 2.051804 AAGCGCAACAGTGTCACAGC 62.052 55.000 11.47 0.35 0.00 4.40
4599 4649 7.421530 TGTAGTACAACAGAGAAAATCTTGC 57.578 36.000 0.00 0.00 35.47 4.01
4703 4896 8.244802 ACGGCAGCTCTAGTTACATTATAATAG 58.755 37.037 0.00 0.00 0.00 1.73
4770 5031 2.511600 CAGTTCATCCGCCGGTCC 60.512 66.667 1.63 0.00 0.00 4.46
4776 5037 1.855213 TTGCTGCACAGTTCATCCGC 61.855 55.000 0.00 0.00 0.00 5.54
4787 5048 0.595825 GTGGCTTCTTGTTGCTGCAC 60.596 55.000 0.00 0.00 0.00 4.57
4827 5088 2.667470 TCCTGGGCTAAGCTACTACAG 58.333 52.381 0.00 0.00 0.00 2.74
4828 5089 2.840640 TCCTGGGCTAAGCTACTACA 57.159 50.000 0.00 0.00 0.00 2.74
4829 5090 3.197116 TGTTTCCTGGGCTAAGCTACTAC 59.803 47.826 0.00 0.00 0.00 2.73
4830 5091 3.446968 TGTTTCCTGGGCTAAGCTACTA 58.553 45.455 0.00 0.00 0.00 1.82
4831 5092 2.266279 TGTTTCCTGGGCTAAGCTACT 58.734 47.619 0.00 0.00 0.00 2.57
4858 5326 0.179043 TCACGTGCTACCTGCCAAAA 60.179 50.000 11.67 0.00 42.00 2.44
4974 5442 8.945057 GGATTGATATTCTTCTATCTTTGGAGC 58.055 37.037 0.00 0.00 31.28 4.70
4996 5464 5.683876 TTCTCTTCTTTCTGATCCGGATT 57.316 39.130 20.22 1.69 0.00 3.01
5045 5513 0.464373 ATCAGCAGTAACATGGCCCG 60.464 55.000 0.00 0.00 0.00 6.13
5107 5575 2.049618 TTGGCGCGTTGGATTTGC 60.050 55.556 8.43 0.00 0.00 3.68
5108 5576 1.732683 GGTTGGCGCGTTGGATTTG 60.733 57.895 8.43 0.00 0.00 2.32
5109 5577 0.606944 TAGGTTGGCGCGTTGGATTT 60.607 50.000 8.43 0.00 0.00 2.17
5110 5578 1.003112 TAGGTTGGCGCGTTGGATT 60.003 52.632 8.43 0.00 0.00 3.01
5111 5579 1.449601 CTAGGTTGGCGCGTTGGAT 60.450 57.895 8.43 0.00 0.00 3.41
5112 5580 1.895020 ATCTAGGTTGGCGCGTTGGA 61.895 55.000 8.43 0.00 0.00 3.53
5113 5581 1.024579 AATCTAGGTTGGCGCGTTGG 61.025 55.000 8.43 0.00 0.00 3.77
5114 5582 0.096976 CAATCTAGGTTGGCGCGTTG 59.903 55.000 8.43 0.00 0.00 4.10
5115 5583 0.321298 ACAATCTAGGTTGGCGCGTT 60.321 50.000 19.72 0.00 33.40 4.84
5116 5584 0.739813 GACAATCTAGGTTGGCGCGT 60.740 55.000 19.72 0.00 33.40 6.01
5117 5585 1.429148 GGACAATCTAGGTTGGCGCG 61.429 60.000 19.72 0.00 38.01 6.86
5118 5586 0.392461 TGGACAATCTAGGTTGGCGC 60.392 55.000 19.72 11.22 38.01 6.53
5119 5587 1.942657 CATGGACAATCTAGGTTGGCG 59.057 52.381 19.72 0.58 38.01 5.69
5120 5588 2.684881 CACATGGACAATCTAGGTTGGC 59.315 50.000 19.72 16.93 36.35 4.52
5121 5589 3.691118 CACACATGGACAATCTAGGTTGG 59.309 47.826 19.72 4.21 33.40 3.77
5122 5590 4.326826 ACACACATGGACAATCTAGGTTG 58.673 43.478 14.35 14.35 35.25 3.77
5123 5591 4.287067 AGACACACATGGACAATCTAGGTT 59.713 41.667 0.00 0.00 0.00 3.50
5124 5592 3.840666 AGACACACATGGACAATCTAGGT 59.159 43.478 0.00 0.00 0.00 3.08
5125 5593 4.186926 CAGACACACATGGACAATCTAGG 58.813 47.826 0.00 0.00 0.00 3.02
5126 5594 4.825422 ACAGACACACATGGACAATCTAG 58.175 43.478 0.00 0.00 0.00 2.43
5127 5595 4.890158 ACAGACACACATGGACAATCTA 57.110 40.909 0.00 0.00 0.00 1.98
5128 5596 3.777106 ACAGACACACATGGACAATCT 57.223 42.857 0.00 0.00 0.00 2.40
5129 5597 4.836125 AAACAGACACACATGGACAATC 57.164 40.909 0.00 0.00 0.00 2.67
5130 5598 5.769662 ACATAAACAGACACACATGGACAAT 59.230 36.000 0.00 0.00 0.00 2.71
5131 5599 5.129634 ACATAAACAGACACACATGGACAA 58.870 37.500 0.00 0.00 0.00 3.18
5132 5600 4.713553 ACATAAACAGACACACATGGACA 58.286 39.130 0.00 0.00 0.00 4.02
5133 5601 4.154195 GGACATAAACAGACACACATGGAC 59.846 45.833 0.00 0.00 0.00 4.02
5134 5602 4.202409 TGGACATAAACAGACACACATGGA 60.202 41.667 0.00 0.00 0.00 3.41
5135 5603 4.071423 TGGACATAAACAGACACACATGG 58.929 43.478 0.00 0.00 0.00 3.66
5136 5604 5.687770 TTGGACATAAACAGACACACATG 57.312 39.130 0.00 0.00 0.00 3.21
5137 5605 4.216257 GCTTGGACATAAACAGACACACAT 59.784 41.667 0.00 0.00 0.00 3.21
5138 5606 3.563808 GCTTGGACATAAACAGACACACA 59.436 43.478 0.00 0.00 0.00 3.72
5139 5607 3.363970 CGCTTGGACATAAACAGACACAC 60.364 47.826 0.00 0.00 0.00 3.82
5140 5608 2.805671 CGCTTGGACATAAACAGACACA 59.194 45.455 0.00 0.00 0.00 3.72
5141 5609 2.159627 CCGCTTGGACATAAACAGACAC 59.840 50.000 0.00 0.00 33.02 3.67
5142 5610 2.037902 TCCGCTTGGACATAAACAGACA 59.962 45.455 0.00 0.00 36.65 3.41
5143 5611 2.695359 TCCGCTTGGACATAAACAGAC 58.305 47.619 0.00 0.00 36.65 3.51
5144 5612 3.627395 ATCCGCTTGGACATAAACAGA 57.373 42.857 0.00 0.00 46.92 3.41
5145 5613 5.811399 TTTATCCGCTTGGACATAAACAG 57.189 39.130 0.00 0.00 46.92 3.16
5146 5614 6.016192 TGTTTTTATCCGCTTGGACATAAACA 60.016 34.615 7.09 7.09 46.92 2.83
5147 5615 6.307077 GTGTTTTTATCCGCTTGGACATAAAC 59.693 38.462 2.87 2.87 46.92 2.01
5148 5616 6.383415 GTGTTTTTATCCGCTTGGACATAAA 58.617 36.000 0.00 0.00 46.92 1.40
5149 5617 5.106078 GGTGTTTTTATCCGCTTGGACATAA 60.106 40.000 0.00 0.00 46.92 1.90
5150 5618 4.396790 GGTGTTTTTATCCGCTTGGACATA 59.603 41.667 0.00 0.00 46.92 2.29
5151 5619 3.192633 GGTGTTTTTATCCGCTTGGACAT 59.807 43.478 0.00 0.00 46.92 3.06
5152 5620 2.554893 GGTGTTTTTATCCGCTTGGACA 59.445 45.455 0.00 0.00 46.92 4.02
5153 5621 2.413634 CGGTGTTTTTATCCGCTTGGAC 60.414 50.000 0.00 0.00 46.92 4.02
5155 5623 1.135517 CCGGTGTTTTTATCCGCTTGG 60.136 52.381 0.00 0.00 42.48 3.61
5156 5624 1.731098 GCCGGTGTTTTTATCCGCTTG 60.731 52.381 1.90 0.00 42.48 4.01
5157 5625 0.524414 GCCGGTGTTTTTATCCGCTT 59.476 50.000 1.90 0.00 42.48 4.68
5158 5626 0.322187 AGCCGGTGTTTTTATCCGCT 60.322 50.000 1.90 0.00 42.48 5.52
5159 5627 0.098200 GAGCCGGTGTTTTTATCCGC 59.902 55.000 1.90 0.00 42.48 5.54
5160 5628 1.444836 TGAGCCGGTGTTTTTATCCG 58.555 50.000 1.90 0.00 43.30 4.18
5161 5629 3.192633 ACATTGAGCCGGTGTTTTTATCC 59.807 43.478 1.90 0.00 0.00 2.59
5162 5630 4.165779 CACATTGAGCCGGTGTTTTTATC 58.834 43.478 1.90 0.00 0.00 1.75
5163 5631 3.613910 GCACATTGAGCCGGTGTTTTTAT 60.614 43.478 1.90 0.00 35.05 1.40
5164 5632 2.287909 GCACATTGAGCCGGTGTTTTTA 60.288 45.455 1.90 0.00 35.05 1.52
5165 5633 1.537990 GCACATTGAGCCGGTGTTTTT 60.538 47.619 1.90 0.00 35.05 1.94
5166 5634 0.031994 GCACATTGAGCCGGTGTTTT 59.968 50.000 1.90 0.00 35.05 2.43
5167 5635 0.823356 AGCACATTGAGCCGGTGTTT 60.823 50.000 1.90 0.00 35.05 2.83
5168 5636 1.228245 AGCACATTGAGCCGGTGTT 60.228 52.632 1.90 0.00 35.05 3.32
5169 5637 1.968017 CAGCACATTGAGCCGGTGT 60.968 57.895 1.90 0.00 35.05 4.16
5170 5638 1.672030 TCAGCACATTGAGCCGGTG 60.672 57.895 1.90 0.00 35.68 4.94
5171 5639 1.672356 GTCAGCACATTGAGCCGGT 60.672 57.895 1.90 0.00 0.00 5.28
5172 5640 2.401766 GGTCAGCACATTGAGCCGG 61.402 63.158 0.00 0.00 39.14 6.13
5173 5641 3.181367 GGTCAGCACATTGAGCCG 58.819 61.111 2.26 0.00 39.14 5.52
5175 5643 0.961019 TTTGGGTCAGCACATTGAGC 59.039 50.000 0.00 0.00 43.13 4.26
5176 5644 1.955778 TGTTTGGGTCAGCACATTGAG 59.044 47.619 0.00 0.00 0.00 3.02
5177 5645 1.680735 GTGTTTGGGTCAGCACATTGA 59.319 47.619 0.00 0.00 32.62 2.57
5178 5646 1.408340 TGTGTTTGGGTCAGCACATTG 59.592 47.619 0.00 0.00 37.00 2.82
5179 5647 1.774110 TGTGTTTGGGTCAGCACATT 58.226 45.000 0.00 0.00 37.00 2.71
5180 5648 1.774110 TTGTGTTTGGGTCAGCACAT 58.226 45.000 0.00 0.00 40.82 3.21
5181 5649 1.550327 TTTGTGTTTGGGTCAGCACA 58.450 45.000 0.00 0.00 39.68 4.57
5182 5650 2.094234 ACTTTTGTGTTTGGGTCAGCAC 60.094 45.455 0.00 0.00 0.00 4.40
5183 5651 2.165437 GACTTTTGTGTTTGGGTCAGCA 59.835 45.455 0.00 0.00 0.00 4.41
5184 5652 2.794631 CGACTTTTGTGTTTGGGTCAGC 60.795 50.000 0.00 0.00 0.00 4.26
5185 5653 2.422127 ACGACTTTTGTGTTTGGGTCAG 59.578 45.455 0.00 0.00 0.00 3.51
5186 5654 2.420722 GACGACTTTTGTGTTTGGGTCA 59.579 45.455 0.00 0.00 0.00 4.02
5187 5655 2.223409 GGACGACTTTTGTGTTTGGGTC 60.223 50.000 0.00 0.00 0.00 4.46
5188 5656 1.746787 GGACGACTTTTGTGTTTGGGT 59.253 47.619 0.00 0.00 0.00 4.51
5189 5657 1.268335 CGGACGACTTTTGTGTTTGGG 60.268 52.381 0.00 0.00 0.00 4.12
5190 5658 1.858399 GCGGACGACTTTTGTGTTTGG 60.858 52.381 0.00 0.00 0.00 3.28
5191 5659 1.063469 AGCGGACGACTTTTGTGTTTG 59.937 47.619 0.00 0.00 0.00 2.93
5192 5660 1.329599 GAGCGGACGACTTTTGTGTTT 59.670 47.619 0.00 0.00 0.00 2.83
5193 5661 0.935196 GAGCGGACGACTTTTGTGTT 59.065 50.000 0.00 0.00 0.00 3.32
5194 5662 0.179094 TGAGCGGACGACTTTTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
5195 5663 1.148310 ATGAGCGGACGACTTTTGTG 58.852 50.000 0.00 0.00 0.00 3.33
5196 5664 1.531149 CAATGAGCGGACGACTTTTGT 59.469 47.619 0.00 0.00 0.00 2.83
5197 5665 1.531149 ACAATGAGCGGACGACTTTTG 59.469 47.619 0.00 4.23 0.00 2.44
5198 5666 1.878953 ACAATGAGCGGACGACTTTT 58.121 45.000 0.00 0.00 0.00 2.27
5199 5667 1.798813 GAACAATGAGCGGACGACTTT 59.201 47.619 0.00 0.00 0.00 2.66
5200 5668 1.429463 GAACAATGAGCGGACGACTT 58.571 50.000 0.00 0.00 0.00 3.01
5201 5669 0.732880 CGAACAATGAGCGGACGACT 60.733 55.000 0.00 0.00 0.00 4.18
5202 5670 1.007336 ACGAACAATGAGCGGACGAC 61.007 55.000 0.00 0.00 0.00 4.34
5203 5671 0.731514 GACGAACAATGAGCGGACGA 60.732 55.000 0.00 0.00 0.00 4.20
5204 5672 0.732880 AGACGAACAATGAGCGGACG 60.733 55.000 0.00 0.00 0.00 4.79
5205 5673 0.716108 CAGACGAACAATGAGCGGAC 59.284 55.000 0.00 0.00 0.00 4.79
5206 5674 0.389817 CCAGACGAACAATGAGCGGA 60.390 55.000 0.00 0.00 0.00 5.54
5207 5675 0.389817 TCCAGACGAACAATGAGCGG 60.390 55.000 0.00 0.00 0.00 5.52
5208 5676 0.716108 GTCCAGACGAACAATGAGCG 59.284 55.000 0.00 0.00 0.00 5.03
5219 5687 8.374180 ATTTAAGCCATAAATGCGTCCAGACG 62.374 42.308 15.61 15.61 44.58 4.18
5220 5688 1.668419 AGCCATAAATGCGTCCAGAC 58.332 50.000 0.00 0.00 0.00 3.51
5221 5689 2.418368 AAGCCATAAATGCGTCCAGA 57.582 45.000 0.00 0.00 0.00 3.86
5222 5690 4.630894 TTTAAGCCATAAATGCGTCCAG 57.369 40.909 0.00 0.00 0.00 3.86
5223 5691 5.590530 AATTTAAGCCATAAATGCGTCCA 57.409 34.783 6.01 0.00 42.15 4.02
5224 5692 5.276820 GCAAATTTAAGCCATAAATGCGTCC 60.277 40.000 6.01 0.00 42.15 4.79
5225 5693 5.727249 GCAAATTTAAGCCATAAATGCGTC 58.273 37.500 6.01 0.00 42.15 5.19
5226 5694 5.717038 GCAAATTTAAGCCATAAATGCGT 57.283 34.783 6.01 0.00 42.15 5.24
5228 5696 5.276820 GGACGCAAATTTAAGCCATAAATGC 60.277 40.000 6.01 6.88 42.15 3.56
5229 5697 5.051774 CGGACGCAAATTTAAGCCATAAATG 60.052 40.000 6.01 0.00 42.15 2.32
5230 5698 5.040635 CGGACGCAAATTTAAGCCATAAAT 58.959 37.500 0.00 0.47 44.30 1.40
5231 5699 4.156190 TCGGACGCAAATTTAAGCCATAAA 59.844 37.500 0.00 0.00 37.86 1.40
5232 5700 3.690139 TCGGACGCAAATTTAAGCCATAA 59.310 39.130 0.00 0.00 0.00 1.90
5233 5701 3.271729 TCGGACGCAAATTTAAGCCATA 58.728 40.909 0.00 0.00 0.00 2.74
5234 5702 2.088423 TCGGACGCAAATTTAAGCCAT 58.912 42.857 0.00 0.00 0.00 4.40
5235 5703 1.524848 TCGGACGCAAATTTAAGCCA 58.475 45.000 0.00 0.00 0.00 4.75
5236 5704 2.844122 ATCGGACGCAAATTTAAGCC 57.156 45.000 0.00 0.00 0.00 4.35
5237 5705 4.201558 CGTAAATCGGACGCAAATTTAAGC 59.798 41.667 0.00 0.00 32.89 3.09
5238 5706 5.318349 ACGTAAATCGGACGCAAATTTAAG 58.682 37.500 0.00 7.93 44.14 1.85
5239 5707 5.280328 ACGTAAATCGGACGCAAATTTAA 57.720 34.783 0.00 0.00 44.14 1.52
5240 5708 4.201705 GGACGTAAATCGGACGCAAATTTA 60.202 41.667 0.00 0.00 44.14 1.40
5241 5709 3.425227 GGACGTAAATCGGACGCAAATTT 60.425 43.478 0.00 0.00 44.14 1.82
5242 5710 2.094734 GGACGTAAATCGGACGCAAATT 59.905 45.455 0.00 0.00 44.14 1.82
5243 5711 1.662122 GGACGTAAATCGGACGCAAAT 59.338 47.619 0.00 0.00 44.14 2.32
5244 5712 1.070038 GGACGTAAATCGGACGCAAA 58.930 50.000 0.00 0.00 44.14 3.68
5245 5713 0.038435 TGGACGTAAATCGGACGCAA 60.038 50.000 0.00 0.00 44.14 4.85
5246 5714 0.173935 ATGGACGTAAATCGGACGCA 59.826 50.000 0.00 0.00 44.14 5.24
5247 5715 0.575390 CATGGACGTAAATCGGACGC 59.425 55.000 0.00 0.00 44.14 5.19
5248 5716 1.586578 CACATGGACGTAAATCGGACG 59.413 52.381 0.00 0.00 45.75 4.79
5249 5717 1.931172 CCACATGGACGTAAATCGGAC 59.069 52.381 0.00 0.00 44.69 4.79
5250 5718 1.826096 TCCACATGGACGTAAATCGGA 59.174 47.619 0.00 0.00 44.69 4.55
5251 5719 2.303163 TCCACATGGACGTAAATCGG 57.697 50.000 0.00 0.00 44.69 4.18
5252 5720 3.482923 CGTTTCCACATGGACGTAAATCG 60.483 47.826 0.00 0.00 45.39 3.34
5253 5721 3.680937 TCGTTTCCACATGGACGTAAATC 59.319 43.478 0.00 0.00 45.39 2.17
5254 5722 3.666274 TCGTTTCCACATGGACGTAAAT 58.334 40.909 0.00 0.00 45.39 1.40
5255 5723 3.061322 CTCGTTTCCACATGGACGTAAA 58.939 45.455 0.00 0.00 45.39 2.01
5256 5724 2.296752 TCTCGTTTCCACATGGACGTAA 59.703 45.455 0.00 0.00 45.39 3.18
5257 5725 1.887854 TCTCGTTTCCACATGGACGTA 59.112 47.619 0.00 0.00 45.39 3.57
5258 5726 0.677288 TCTCGTTTCCACATGGACGT 59.323 50.000 0.00 0.00 45.39 4.34
5259 5727 1.068474 GTCTCGTTTCCACATGGACG 58.932 55.000 0.00 2.90 45.39 4.79
5260 5728 2.069273 CTGTCTCGTTTCCACATGGAC 58.931 52.381 0.00 0.00 45.39 4.02
5261 5729 1.967779 TCTGTCTCGTTTCCACATGGA 59.032 47.619 0.00 0.00 43.73 3.41
5262 5730 2.069273 GTCTGTCTCGTTTCCACATGG 58.931 52.381 0.00 0.00 0.00 3.66
5263 5731 1.721389 CGTCTGTCTCGTTTCCACATG 59.279 52.381 0.00 0.00 0.00 3.21
5264 5732 1.340248 ACGTCTGTCTCGTTTCCACAT 59.660 47.619 0.00 0.00 38.38 3.21
5265 5733 0.742505 ACGTCTGTCTCGTTTCCACA 59.257 50.000 0.00 0.00 38.38 4.17
5266 5734 1.129326 CACGTCTGTCTCGTTTCCAC 58.871 55.000 0.00 0.00 39.55 4.02
5267 5735 0.596600 GCACGTCTGTCTCGTTTCCA 60.597 55.000 0.00 0.00 39.55 3.53
5268 5736 1.282930 GGCACGTCTGTCTCGTTTCC 61.283 60.000 0.00 0.00 39.55 3.13
5269 5737 2.142641 GGCACGTCTGTCTCGTTTC 58.857 57.895 0.00 0.00 39.55 2.78
5270 5738 4.338327 GGCACGTCTGTCTCGTTT 57.662 55.556 0.00 0.00 39.55 3.60
5287 5755 4.640855 ACACCGAGCGGACACACG 62.641 66.667 16.83 0.00 38.96 4.49
5288 5756 2.733593 GACACCGAGCGGACACAC 60.734 66.667 16.83 0.00 38.96 3.82
5289 5757 3.986006 GGACACCGAGCGGACACA 61.986 66.667 16.83 0.00 38.96 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.