Multiple sequence alignment - TraesCS1A01G279000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G279000 chr1A 100.000 5561 0 0 1 5561 474645247 474639687 0.000000e+00 10270.0
1 TraesCS1A01G279000 chr1B 94.983 2412 86 16 1087 3478 501333760 501331364 0.000000e+00 3751.0
2 TraesCS1A01G279000 chr1B 93.424 1034 25 11 3568 4601 501331369 501330379 0.000000e+00 1493.0
3 TraesCS1A01G279000 chr1B 93.768 690 19 7 4660 5335 501329507 501328828 0.000000e+00 1014.0
4 TraesCS1A01G279000 chr1B 94.083 169 10 0 5333 5501 501328713 501328545 1.990000e-64 257.0
5 TraesCS1A01G279000 chr1B 92.814 167 3 2 4522 4680 501330412 501330247 3.350000e-57 233.0
6 TraesCS1A01G279000 chr1D 95.188 2390 82 15 1087 3458 375939685 375937311 0.000000e+00 3746.0
7 TraesCS1A01G279000 chr1D 93.156 1052 38 12 4522 5561 375934048 375933019 0.000000e+00 1513.0
8 TraesCS1A01G279000 chr1D 94.904 883 23 9 3736 4614 375934866 375934002 0.000000e+00 1362.0
9 TraesCS1A01G279000 chr1D 81.567 434 56 11 1 420 375941040 375940617 2.480000e-88 337.0
10 TraesCS1A01G279000 chr1D 96.429 168 5 1 3573 3740 375937323 375937157 5.490000e-70 276.0
11 TraesCS1A01G279000 chr1D 92.857 112 8 0 3472 3583 225936849 225936960 4.460000e-36 163.0
12 TraesCS1A01G279000 chr1D 94.118 68 4 0 5494 5561 9218378 9218311 2.740000e-18 104.0
13 TraesCS1A01G279000 chr1D 89.474 76 8 0 5486 5561 490547418 490547343 4.590000e-16 97.1
14 TraesCS1A01G279000 chr1D 100.000 32 0 0 451 482 375940571 375940540 6.020000e-05 60.2
15 TraesCS1A01G279000 chr2A 81.830 754 122 13 2194 2938 717171802 717171055 2.200000e-173 619.0
16 TraesCS1A01G279000 chr2A 91.036 357 32 0 1283 1639 717173053 717172697 3.010000e-132 483.0
17 TraesCS1A01G279000 chr2A 87.907 215 20 3 3031 3239 717170922 717170708 1.200000e-61 248.0
18 TraesCS1A01G279000 chr2A 88.961 154 17 0 1970 2123 717172505 717172352 2.040000e-44 191.0
19 TraesCS1A01G279000 chr2A 95.283 106 3 2 3475 3580 660286775 660286878 3.450000e-37 167.0
20 TraesCS1A01G279000 chr2A 96.970 66 2 0 5496 5561 20510181 20510116 1.640000e-20 111.0
21 TraesCS1A01G279000 chr2A 94.118 68 4 0 5494 5561 441053724 441053791 2.740000e-18 104.0
22 TraesCS1A01G279000 chr2A 83.516 91 14 1 979 1068 730610700 730610610 3.570000e-12 84.2
23 TraesCS1A01G279000 chr2A 91.228 57 5 0 1012 1068 765034245 765034301 1.660000e-10 78.7
24 TraesCS1A01G279000 chr2B 81.477 745 115 16 2194 2924 697442970 697442235 1.730000e-164 590.0
25 TraesCS1A01G279000 chr2B 83.622 519 75 8 3951 4462 697144543 697144028 3.900000e-131 479.0
26 TraesCS1A01G279000 chr2B 83.398 518 78 7 3951 4462 697258797 697258282 1.810000e-129 473.0
27 TraesCS1A01G279000 chr2B 83.398 512 84 1 3951 4462 697401331 697400821 1.810000e-129 473.0
28 TraesCS1A01G279000 chr2B 83.044 519 76 8 3951 4462 697187069 697186556 1.410000e-125 460.0
29 TraesCS1A01G279000 chr2B 82.885 520 78 8 3951 4462 697362099 697361583 1.830000e-124 457.0
30 TraesCS1A01G279000 chr2B 82.885 520 78 8 3951 4462 697385219 697384703 1.830000e-124 457.0
31 TraesCS1A01G279000 chr2B 86.667 360 48 0 1283 1642 697152225 697151866 3.120000e-107 399.0
32 TraesCS1A01G279000 chr2B 89.902 307 30 1 1336 1642 697444431 697444126 1.450000e-105 394.0
33 TraesCS1A01G279000 chr2B 86.389 360 47 1 1283 1642 697392910 697392553 5.220000e-105 392.0
34 TraesCS1A01G279000 chr2B 85.278 360 51 1 1283 1642 697351150 697350793 2.450000e-98 370.0
35 TraesCS1A01G279000 chr2B 89.352 216 16 4 3031 3240 697442091 697441877 1.190000e-66 265.0
36 TraesCS1A01G279000 chr2B 85.340 191 23 4 1938 2127 697443898 697443712 5.690000e-45 193.0
37 TraesCS1A01G279000 chr2B 95.413 109 5 0 1283 1391 697444541 697444433 2.060000e-39 174.0
38 TraesCS1A01G279000 chr2B 91.262 103 9 0 1774 1876 697444045 697443943 2.090000e-29 141.0
39 TraesCS1A01G279000 chr2B 97.561 41 1 0 1283 1323 697433202 697433162 2.780000e-08 71.3
40 TraesCS1A01G279000 chr2D 85.770 513 70 3 3951 4462 579518653 579518143 1.760000e-149 540.0
41 TraesCS1A01G279000 chr2D 91.008 367 33 0 1283 1649 579521510 579521144 3.870000e-136 496.0
42 TraesCS1A01G279000 chr2D 90.698 215 14 3 3031 3239 579519180 579518966 1.180000e-71 281.0
43 TraesCS1A01G279000 chr2D 88.272 162 19 0 1965 2126 579520880 579520719 1.580000e-45 195.0
44 TraesCS1A01G279000 chr2D 92.233 103 8 0 1774 1876 579521060 579520958 4.490000e-31 147.0
45 TraesCS1A01G279000 chr7D 97.030 101 3 0 3472 3572 168579916 168580016 2.660000e-38 171.0
46 TraesCS1A01G279000 chr7D 93.578 109 6 1 3478 3585 269373424 269373316 1.600000e-35 161.0
47 TraesCS1A01G279000 chr7D 89.610 77 7 1 5486 5561 565469483 565469559 4.590000e-16 97.1
48 TraesCS1A01G279000 chr7B 95.238 105 5 0 3475 3579 747370632 747370736 3.450000e-37 167.0
49 TraesCS1A01G279000 chr6D 92.920 113 6 2 3478 3590 374820300 374820190 4.460000e-36 163.0
50 TraesCS1A01G279000 chr6D 95.455 66 2 1 5497 5561 419422756 419422691 2.740000e-18 104.0
51 TraesCS1A01G279000 chr4D 92.174 115 9 0 3470 3584 509823306 509823420 4.460000e-36 163.0
52 TraesCS1A01G279000 chr4D 94.872 39 2 0 1011 1049 56716267 56716229 1.670000e-05 62.1
53 TraesCS1A01G279000 chr6B 92.857 112 7 1 3471 3582 718346809 718346919 1.600000e-35 161.0
54 TraesCS1A01G279000 chr6B 90.678 118 9 2 3478 3593 336181310 336181193 7.460000e-34 156.0
55 TraesCS1A01G279000 chr3D 91.026 78 3 4 5488 5561 609494954 609494877 9.860000e-18 102.0
56 TraesCS1A01G279000 chr7A 80.000 135 20 5 5428 5560 136771977 136772106 5.930000e-15 93.5
57 TraesCS1A01G279000 chr4B 91.935 62 5 0 1007 1068 83139741 83139680 2.760000e-13 87.9
58 TraesCS1A01G279000 chr4A 88.136 59 7 0 1010 1068 540439758 540439816 2.780000e-08 71.3
59 TraesCS1A01G279000 chr6A 89.091 55 5 1 1012 1065 70433923 70433977 3.600000e-07 67.6
60 TraesCS1A01G279000 chr5B 91.489 47 4 0 1022 1068 345133835 345133881 1.290000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G279000 chr1A 474639687 474645247 5560 True 10270.000000 10270 100.000000 1 5561 1 chr1A.!!$R1 5560
1 TraesCS1A01G279000 chr1B 501328545 501333760 5215 True 1349.600000 3751 93.814400 1087 5501 5 chr1B.!!$R1 4414
2 TraesCS1A01G279000 chr1D 375933019 375941040 8021 True 1215.700000 3746 93.540667 1 5561 6 chr1D.!!$R3 5560
3 TraesCS1A01G279000 chr2A 717170708 717173053 2345 True 385.250000 619 87.433500 1283 3239 4 chr2A.!!$R3 1956
4 TraesCS1A01G279000 chr2B 697144028 697144543 515 True 479.000000 479 83.622000 3951 4462 1 chr2B.!!$R1 511
5 TraesCS1A01G279000 chr2B 697258282 697258797 515 True 473.000000 473 83.398000 3951 4462 1 chr2B.!!$R4 511
6 TraesCS1A01G279000 chr2B 697400821 697401331 510 True 473.000000 473 83.398000 3951 4462 1 chr2B.!!$R9 511
7 TraesCS1A01G279000 chr2B 697186556 697187069 513 True 460.000000 460 83.044000 3951 4462 1 chr2B.!!$R3 511
8 TraesCS1A01G279000 chr2B 697361583 697362099 516 True 457.000000 457 82.885000 3951 4462 1 chr2B.!!$R6 511
9 TraesCS1A01G279000 chr2B 697384703 697385219 516 True 457.000000 457 82.885000 3951 4462 1 chr2B.!!$R7 511
10 TraesCS1A01G279000 chr2B 697441877 697444541 2664 True 292.833333 590 88.791000 1283 3240 6 chr2B.!!$R11 1957
11 TraesCS1A01G279000 chr2D 579518143 579521510 3367 True 331.800000 540 89.596200 1283 4462 5 chr2D.!!$R1 3179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 106 0.034896 GGTGGATCCTCGTGTGTTGT 59.965 55.0 14.23 0.0 0.00 3.32 F
586 778 0.105039 CTGTAATCCCCGTGAGCTCC 59.895 60.0 12.15 1.4 0.00 4.70 F
1662 2044 0.109365 CACTCGCTCACCTCTCACTG 60.109 60.0 0.00 0.0 0.00 3.66 F
2290 3489 1.037030 GGGGAATGCCATTTGCTCGA 61.037 55.0 0.00 0.0 42.00 4.04 F
2295 3494 1.091771 ATGCCATTTGCTCGACGGAG 61.092 55.0 0.00 0.0 43.46 4.63 F
3489 4832 1.200519 CAAGTATTCCCTCCGTCCCA 58.799 55.0 0.00 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 2041 0.669318 CAACGGGCGTCATGTACAGT 60.669 55.000 0.33 0.0 0.00 3.55 R
1973 2358 1.115930 CCCACCTCGGATCCCTACAG 61.116 65.000 6.06 0.0 36.56 2.74 R
3470 4813 1.200519 TGGGACGGAGGGAATACTTG 58.799 55.000 0.00 0.0 0.00 3.16 R
3471 4814 1.961133 TTGGGACGGAGGGAATACTT 58.039 50.000 0.00 0.0 0.00 2.24 R
3550 4893 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.0 0.00 1.40 R
5265 9752 1.001520 TGTTACATCGTGGACACCAGG 59.998 52.381 0.00 0.0 40.34 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.214061 CCTCATGGATTTGCAGATGGCG 62.214 54.545 0.00 0.00 40.00 5.69
53 54 1.003233 GGGTGGTCTTCTTTCCGATGT 59.997 52.381 0.00 0.00 0.00 3.06
64 65 2.046023 CCGATGTGGAGCAAGCCA 60.046 61.111 0.00 0.00 42.00 4.75
68 69 2.012902 GATGTGGAGCAAGCCATGGC 62.013 60.000 30.12 30.12 40.68 4.40
91 100 1.079127 GTGGTGGTGGATCCTCGTG 60.079 63.158 14.23 0.00 37.07 4.35
97 106 0.034896 GGTGGATCCTCGTGTGTTGT 59.965 55.000 14.23 0.00 0.00 3.32
100 109 3.596214 GTGGATCCTCGTGTGTTGTTAT 58.404 45.455 14.23 0.00 0.00 1.89
101 110 4.000988 GTGGATCCTCGTGTGTTGTTATT 58.999 43.478 14.23 0.00 0.00 1.40
102 111 5.172934 GTGGATCCTCGTGTGTTGTTATTA 58.827 41.667 14.23 0.00 0.00 0.98
103 112 5.291128 GTGGATCCTCGTGTGTTGTTATTAG 59.709 44.000 14.23 0.00 0.00 1.73
104 113 4.809426 GGATCCTCGTGTGTTGTTATTAGG 59.191 45.833 3.84 0.00 0.00 2.69
105 114 3.592059 TCCTCGTGTGTTGTTATTAGGC 58.408 45.455 0.00 0.00 0.00 3.93
107 116 3.617263 CCTCGTGTGTTGTTATTAGGCTC 59.383 47.826 0.00 0.00 0.00 4.70
108 117 4.242475 CTCGTGTGTTGTTATTAGGCTCA 58.758 43.478 0.00 0.00 0.00 4.26
109 118 4.827692 TCGTGTGTTGTTATTAGGCTCAT 58.172 39.130 0.00 0.00 0.00 2.90
110 119 5.968254 TCGTGTGTTGTTATTAGGCTCATA 58.032 37.500 0.00 0.00 0.00 2.15
111 120 6.399743 TCGTGTGTTGTTATTAGGCTCATAA 58.600 36.000 0.00 0.00 0.00 1.90
114 123 7.148474 CGTGTGTTGTTATTAGGCTCATAAGTT 60.148 37.037 1.43 0.00 0.00 2.66
120 129 6.929049 TGTTATTAGGCTCATAAGTTGGATCG 59.071 38.462 1.43 0.00 0.00 3.69
147 156 3.125316 CCAAGTTCTATGGCGTTTCTGAC 59.875 47.826 0.00 0.00 0.00 3.51
184 193 2.896443 GCTCTCAGTTAGCCCGCT 59.104 61.111 0.00 0.00 33.73 5.52
187 196 1.681538 CTCTCAGTTAGCCCGCTCTA 58.318 55.000 0.00 0.00 0.00 2.43
188 197 1.335496 CTCTCAGTTAGCCCGCTCTAC 59.665 57.143 0.00 0.00 0.00 2.59
203 212 3.181489 CGCTCTACGGTTAAATCAGACCT 60.181 47.826 0.00 0.00 38.44 3.85
205 214 5.521544 GCTCTACGGTTAAATCAGACCTAG 58.478 45.833 0.00 0.00 33.69 3.02
222 231 4.548513 GGTGGGGTTGGGGTTGCA 62.549 66.667 0.00 0.00 0.00 4.08
223 232 2.203773 GTGGGGTTGGGGTTGCAT 60.204 61.111 0.00 0.00 0.00 3.96
226 235 1.374568 GGGGTTGGGGTTGCATTTG 59.625 57.895 0.00 0.00 0.00 2.32
231 240 0.692419 TTGGGGTTGCATTTGGTGGT 60.692 50.000 0.00 0.00 0.00 4.16
241 251 3.900601 TGCATTTGGTGGTGTATTCCTTT 59.099 39.130 0.00 0.00 0.00 3.11
250 260 5.232463 GTGGTGTATTCCTTTTGACTACGA 58.768 41.667 0.00 0.00 33.10 3.43
251 261 5.119743 GTGGTGTATTCCTTTTGACTACGAC 59.880 44.000 0.00 0.00 33.10 4.34
253 263 5.156355 GTGTATTCCTTTTGACTACGACGA 58.844 41.667 0.00 0.00 33.10 4.20
254 264 5.803967 GTGTATTCCTTTTGACTACGACGAT 59.196 40.000 0.00 0.00 33.10 3.73
260 270 4.379603 CCTTTTGACTACGACGATGACTCT 60.380 45.833 0.00 0.00 0.00 3.24
261 271 4.761235 TTTGACTACGACGATGACTCTT 57.239 40.909 0.00 0.00 0.00 2.85
263 273 6.432607 TTTGACTACGACGATGACTCTTAT 57.567 37.500 0.00 0.00 0.00 1.73
264 274 5.405331 TGACTACGACGATGACTCTTATG 57.595 43.478 0.00 0.00 0.00 1.90
267 277 2.798680 ACGACGATGACTCTTATGTGC 58.201 47.619 0.00 0.00 0.00 4.57
287 297 3.002583 TGAGGGTGCTCCATGCGA 61.003 61.111 7.20 0.00 46.63 5.10
299 309 0.249238 CCATGCGAGAGTGCTCTACC 60.249 60.000 1.20 0.00 40.61 3.18
300 310 0.593518 CATGCGAGAGTGCTCTACCG 60.594 60.000 1.20 4.09 40.61 4.02
302 312 2.408241 GCGAGAGTGCTCTACCGGT 61.408 63.158 13.98 13.98 40.61 5.28
306 316 0.539901 AGAGTGCTCTACCGGTGTGT 60.540 55.000 19.93 0.00 38.35 3.72
309 319 0.317479 GTGCTCTACCGGTGTGTCTT 59.683 55.000 19.93 0.00 0.00 3.01
324 334 0.244721 GTCTTTGCCTTGTGATGCCC 59.755 55.000 0.00 0.00 0.00 5.36
325 335 0.112995 TCTTTGCCTTGTGATGCCCT 59.887 50.000 0.00 0.00 0.00 5.19
326 336 0.971386 CTTTGCCTTGTGATGCCCTT 59.029 50.000 0.00 0.00 0.00 3.95
330 340 1.926511 GCCTTGTGATGCCCTTGTCG 61.927 60.000 0.00 0.00 0.00 4.35
333 343 3.134127 GTGATGCCCTTGTCGCCC 61.134 66.667 0.00 0.00 0.00 6.13
335 345 4.467084 GATGCCCTTGTCGCCCGA 62.467 66.667 0.00 0.00 0.00 5.14
362 372 1.506309 GCACATGCGTCTTGGTGTCA 61.506 55.000 0.00 0.00 33.88 3.58
364 374 1.129251 CACATGCGTCTTGGTGTCATC 59.871 52.381 0.00 0.00 0.00 2.92
367 377 0.678950 TGCGTCTTGGTGTCATCTCA 59.321 50.000 0.00 0.00 0.00 3.27
396 406 1.518903 GACCTTTCAGCCACACCAGC 61.519 60.000 0.00 0.00 0.00 4.85
397 407 1.529010 CCTTTCAGCCACACCAGCA 60.529 57.895 0.00 0.00 0.00 4.41
413 426 1.070376 CAGCAACACATGTGTCGTGAG 60.070 52.381 30.64 17.50 44.13 3.51
420 433 1.336887 ACATGTGTCGTGAGGTAGTGC 60.337 52.381 0.00 0.00 0.00 4.40
421 434 0.966179 ATGTGTCGTGAGGTAGTGCA 59.034 50.000 0.00 0.00 0.00 4.57
422 435 0.313987 TGTGTCGTGAGGTAGTGCAG 59.686 55.000 0.00 0.00 0.00 4.41
423 436 0.314302 GTGTCGTGAGGTAGTGCAGT 59.686 55.000 0.00 0.00 0.00 4.40
424 437 0.596577 TGTCGTGAGGTAGTGCAGTC 59.403 55.000 0.00 0.00 0.00 3.51
425 438 0.882474 GTCGTGAGGTAGTGCAGTCT 59.118 55.000 0.00 0.00 0.00 3.24
426 439 1.135632 GTCGTGAGGTAGTGCAGTCTC 60.136 57.143 0.00 0.00 0.00 3.36
427 440 1.169577 CGTGAGGTAGTGCAGTCTCT 58.830 55.000 0.00 0.00 0.00 3.10
428 441 1.135546 CGTGAGGTAGTGCAGTCTCTG 60.136 57.143 0.00 0.00 34.12 3.35
429 442 2.163509 GTGAGGTAGTGCAGTCTCTGA 58.836 52.381 0.00 0.00 32.44 3.27
430 443 2.757868 GTGAGGTAGTGCAGTCTCTGAT 59.242 50.000 0.00 0.00 32.44 2.90
431 444 2.757314 TGAGGTAGTGCAGTCTCTGATG 59.243 50.000 0.00 0.00 32.44 3.07
432 445 2.757868 GAGGTAGTGCAGTCTCTGATGT 59.242 50.000 0.00 0.00 32.44 3.06
445 458 1.872952 TCTGATGTGTGTTGCCTTTCG 59.127 47.619 0.00 0.00 0.00 3.46
446 459 0.950836 TGATGTGTGTTGCCTTTCGG 59.049 50.000 0.00 0.00 0.00 4.30
449 462 2.264005 TGTGTGTTGCCTTTCGGTAT 57.736 45.000 0.00 0.00 0.00 2.73
482 520 2.159707 CCGAAGCAGTTTGATTACACCG 60.160 50.000 0.00 0.00 0.00 4.94
483 521 2.159707 CGAAGCAGTTTGATTACACCGG 60.160 50.000 0.00 0.00 0.00 5.28
485 523 0.878416 GCAGTTTGATTACACCGGCA 59.122 50.000 0.00 0.00 0.00 5.69
488 526 3.127895 GCAGTTTGATTACACCGGCAATA 59.872 43.478 0.00 0.00 0.00 1.90
491 529 4.947388 AGTTTGATTACACCGGCAATACAT 59.053 37.500 0.00 0.00 0.00 2.29
492 530 4.891627 TTGATTACACCGGCAATACATG 57.108 40.909 0.00 0.00 0.00 3.21
499 682 2.095853 CACCGGCAATACATGTGTCTTC 59.904 50.000 9.11 0.00 0.00 2.87
510 693 3.809832 ACATGTGTCTTCAAAGGTTCTCG 59.190 43.478 0.00 0.00 0.00 4.04
528 711 1.213430 TCGGAGTGACCCCTTGTTTTT 59.787 47.619 0.00 0.00 34.64 1.94
550 742 0.320050 TTCCTCTGCATGCGTGTGTA 59.680 50.000 14.09 0.00 0.00 2.90
558 750 2.810852 TGCATGCGTGTGTATCTTTTGA 59.189 40.909 14.09 0.00 0.00 2.69
570 762 7.012421 GTGTGTATCTTTTGACTTTTCTCCTGT 59.988 37.037 0.00 0.00 0.00 4.00
576 768 6.715264 TCTTTTGACTTTTCTCCTGTAATCCC 59.285 38.462 0.00 0.00 0.00 3.85
586 778 0.105039 CTGTAATCCCCGTGAGCTCC 59.895 60.000 12.15 1.40 0.00 4.70
652 844 5.244755 AGGCAACGGCAAATGAAAAATATT 58.755 33.333 0.00 0.00 43.71 1.28
654 846 5.121454 GGCAACGGCAAATGAAAAATATTCA 59.879 36.000 0.00 0.00 43.71 2.57
659 851 8.994429 ACGGCAAATGAAAAATATTCACATAA 57.006 26.923 0.00 0.00 0.00 1.90
726 918 4.907188 TTTTCGCTTGCAATGCTTAATG 57.093 36.364 6.82 0.00 34.38 1.90
727 919 1.912001 TCGCTTGCAATGCTTAATGC 58.088 45.000 6.82 6.23 42.86 3.56
728 920 1.473677 TCGCTTGCAATGCTTAATGCT 59.526 42.857 6.82 0.00 42.97 3.79
729 921 2.094597 TCGCTTGCAATGCTTAATGCTT 60.095 40.909 6.82 0.00 42.97 3.91
733 925 5.332055 CGCTTGCAATGCTTAATGCTTATTC 60.332 40.000 6.82 0.00 42.97 1.75
734 926 5.521010 GCTTGCAATGCTTAATGCTTATTCA 59.479 36.000 6.82 0.00 42.97 2.57
735 927 6.509039 GCTTGCAATGCTTAATGCTTATTCAC 60.509 38.462 6.82 0.00 42.97 3.18
738 930 7.098477 TGCAATGCTTAATGCTTATTCACTTT 58.902 30.769 6.82 0.00 42.97 2.66
739 931 7.603404 TGCAATGCTTAATGCTTATTCACTTTT 59.397 29.630 6.82 0.00 42.97 2.27
740 932 8.445493 GCAATGCTTAATGCTTATTCACTTTTT 58.555 29.630 0.00 0.00 43.37 1.94
761 953 6.836577 TTTTCAAATGGGAAAATTCGACAC 57.163 33.333 0.00 0.00 40.71 3.67
763 955 4.148838 TCAAATGGGAAAATTCGACACCT 58.851 39.130 0.00 0.00 0.00 4.00
765 957 1.904287 TGGGAAAATTCGACACCTGG 58.096 50.000 0.00 0.00 0.00 4.45
771 963 0.674895 AATTCGACACCTGGCTCAGC 60.675 55.000 0.00 0.00 0.00 4.26
782 974 2.665000 GCTCAGCCTAGCACACCA 59.335 61.111 3.11 0.00 42.30 4.17
786 979 0.692476 TCAGCCTAGCACACCAACAT 59.308 50.000 0.00 0.00 0.00 2.71
788 981 2.304470 TCAGCCTAGCACACCAACATAA 59.696 45.455 0.00 0.00 0.00 1.90
804 997 9.429359 CACCAACATAAGAGAGAATATCATACC 57.571 37.037 0.00 0.00 0.00 2.73
814 1007 9.482627 AGAGAGAATATCATACCGAAATCAAAC 57.517 33.333 0.00 0.00 0.00 2.93
815 1008 9.261180 GAGAGAATATCATACCGAAATCAAACA 57.739 33.333 0.00 0.00 0.00 2.83
817 1010 8.731275 AGAATATCATACCGAAATCAAACACA 57.269 30.769 0.00 0.00 0.00 3.72
818 1011 9.342308 AGAATATCATACCGAAATCAAACACAT 57.658 29.630 0.00 0.00 0.00 3.21
824 1017 9.400638 TCATACCGAAATCAAACACATTAAAAC 57.599 29.630 0.00 0.00 0.00 2.43
825 1018 9.186323 CATACCGAAATCAAACACATTAAAACA 57.814 29.630 0.00 0.00 0.00 2.83
826 1019 7.458038 ACCGAAATCAAACACATTAAAACAC 57.542 32.000 0.00 0.00 0.00 3.32
828 1021 7.708752 ACCGAAATCAAACACATTAAAACACAT 59.291 29.630 0.00 0.00 0.00 3.21
829 1022 8.003224 CCGAAATCAAACACATTAAAACACATG 58.997 33.333 0.00 0.00 0.00 3.21
830 1023 8.750416 CGAAATCAAACACATTAAAACACATGA 58.250 29.630 0.00 0.00 0.00 3.07
835 1028 9.429359 TCAAACACATTAAAACACATGAAAACT 57.571 25.926 0.00 0.00 0.00 2.66
922 1115 5.099575 ACACGTGAAATTCCAAGTTCAAAC 58.900 37.500 25.01 0.00 43.48 2.93
927 1120 6.459024 CGTGAAATTCCAAGTTCAAACAGGTA 60.459 38.462 3.88 0.00 43.48 3.08
937 1130 9.840427 CCAAGTTCAAACAGGTATTAACATAAG 57.160 33.333 0.00 0.00 0.00 1.73
971 1239 1.935933 AAATAGTGCCGAGCGGTAAG 58.064 50.000 10.94 0.00 37.65 2.34
977 1245 1.153628 GCCGAGCGGTAAGTGTCAT 60.154 57.895 10.94 0.00 37.65 3.06
982 1250 3.869246 CCGAGCGGTAAGTGTCATTATTT 59.131 43.478 0.00 0.00 0.00 1.40
986 1254 7.063456 CGAGCGGTAAGTGTCATTATTTATTG 58.937 38.462 0.00 0.00 0.00 1.90
988 1256 7.693952 AGCGGTAAGTGTCATTATTTATTGTG 58.306 34.615 0.00 0.00 0.00 3.33
989 1257 6.910433 GCGGTAAGTGTCATTATTTATTGTGG 59.090 38.462 0.00 0.00 0.00 4.17
990 1258 7.201661 GCGGTAAGTGTCATTATTTATTGTGGA 60.202 37.037 0.00 0.00 0.00 4.02
1064 1332 6.820656 CACATGCTAATAGAATATCACCCTCC 59.179 42.308 0.00 0.00 0.00 4.30
1078 1362 3.644738 TCACCCTCCTAAACTTTCGAACT 59.355 43.478 0.00 0.00 0.00 3.01
1081 1365 4.102054 ACCCTCCTAAACTTTCGAACTTGA 59.898 41.667 0.00 0.00 0.00 3.02
1083 1367 6.013984 ACCCTCCTAAACTTTCGAACTTGATA 60.014 38.462 0.00 0.00 0.00 2.15
1146 1463 1.665442 AAGGCCCGTGCATTTGAAC 59.335 52.632 0.00 0.00 38.57 3.18
1147 1464 1.815817 AAGGCCCGTGCATTTGAACC 61.816 55.000 0.00 0.00 38.57 3.62
1244 1569 1.816863 TTCTCCCACAGTCCACTCGC 61.817 60.000 0.00 0.00 0.00 5.03
1648 2030 2.722201 GCCTCCAGGTACCCACTCG 61.722 68.421 8.74 0.00 37.57 4.18
1659 2041 1.979155 CCCACTCGCTCACCTCTCA 60.979 63.158 0.00 0.00 0.00 3.27
1662 2044 0.109365 CACTCGCTCACCTCTCACTG 60.109 60.000 0.00 0.00 0.00 3.66
1665 2047 1.131504 CTCGCTCACCTCTCACTGTAC 59.868 57.143 0.00 0.00 0.00 2.90
1754 2136 2.431942 AGCTTACGAACCGCACCG 60.432 61.111 0.00 0.00 0.00 4.94
1884 2266 5.151389 GTCGCCGTGAGTAAAAATTCAAAT 58.849 37.500 0.00 0.00 0.00 2.32
1936 2318 2.041216 GGTATCTGTTTGGGGTGTCCTT 59.959 50.000 0.00 0.00 36.20 3.36
1960 2342 1.525077 GTGCGTTTGGTCTGGTGGA 60.525 57.895 0.00 0.00 0.00 4.02
1973 2358 1.291272 GGTGGACGGTGTACAGGTC 59.709 63.158 15.41 15.41 0.00 3.85
2117 2502 2.506438 CCGTTCCTCGCTTCGGTC 60.506 66.667 0.00 0.00 38.45 4.79
2133 2518 1.278127 CGGTCAGGTAATTCCAGTGGT 59.722 52.381 9.54 0.00 39.02 4.16
2167 3355 3.059188 GTGTGATTTCCGTATATTGCCCG 60.059 47.826 0.00 0.00 0.00 6.13
2290 3489 1.037030 GGGGAATGCCATTTGCTCGA 61.037 55.000 0.00 0.00 42.00 4.04
2295 3494 1.091771 ATGCCATTTGCTCGACGGAG 61.092 55.000 0.00 0.00 43.46 4.63
2334 3533 2.097466 CACGAAACCATACCCTGATTGC 59.903 50.000 0.00 0.00 0.00 3.56
2376 3575 2.964464 AGTCATGGCATCCTACTCTCAG 59.036 50.000 0.00 0.00 0.00 3.35
2382 3581 2.159028 GGCATCCTACTCTCAGTGGAAC 60.159 54.545 0.00 0.00 32.17 3.62
2464 3663 4.391155 CTTCGAGGTAGTAGAGCCTATGT 58.609 47.826 0.00 0.00 34.81 2.29
2471 3670 7.017319 AGGTAGTAGAGCCTATGTTGTTTTT 57.983 36.000 0.00 0.00 32.49 1.94
2472 3671 8.142485 AGGTAGTAGAGCCTATGTTGTTTTTA 57.858 34.615 0.00 0.00 32.49 1.52
2474 3673 9.392259 GGTAGTAGAGCCTATGTTGTTTTTATT 57.608 33.333 0.00 0.00 0.00 1.40
2476 3675 8.863872 AGTAGAGCCTATGTTGTTTTTATTGT 57.136 30.769 0.00 0.00 0.00 2.71
2640 3855 1.534595 GCGCAATCAGTTAATGCTGGG 60.535 52.381 0.30 0.00 37.92 4.45
2663 3878 7.186225 TGGGATGGATATGGTATTGGTTATCAT 59.814 37.037 0.00 0.00 35.72 2.45
2691 3907 9.208022 TGGTCATTTAAGATATATTCTCAAGCG 57.792 33.333 0.00 0.00 31.78 4.68
2705 3921 2.540101 CTCAAGCGACTCGTTCTTTTGT 59.460 45.455 0.00 0.00 0.00 2.83
2710 3926 5.668558 AGCGACTCGTTCTTTTGTATTTT 57.331 34.783 0.00 0.00 0.00 1.82
2938 4160 3.377172 GCATGTTCGCCTACCTATGTTTT 59.623 43.478 0.00 0.00 0.00 2.43
2966 4188 9.463443 GCTGTTACTGTGAAATTGTTAGATTTT 57.537 29.630 0.00 0.00 29.75 1.82
3008 4237 6.586463 GTCTCACATATTGGTGACCATATACG 59.414 42.308 4.56 1.96 42.56 3.06
3410 4751 6.097981 TGCCATATTTTTAACTGCCATGATGA 59.902 34.615 0.00 0.00 0.00 2.92
3462 4805 9.630098 AAGTTCAAATATAAGATGTTTGCAGTG 57.370 29.630 4.36 0.00 40.03 3.66
3463 4806 8.246180 AGTTCAAATATAAGATGTTTGCAGTGG 58.754 33.333 4.36 0.00 40.03 4.00
3464 4807 7.936496 TCAAATATAAGATGTTTGCAGTGGA 57.064 32.000 4.36 0.00 40.03 4.02
3465 4808 7.761409 TCAAATATAAGATGTTTGCAGTGGAC 58.239 34.615 4.36 0.00 40.03 4.02
3466 4809 7.611467 TCAAATATAAGATGTTTGCAGTGGACT 59.389 33.333 4.36 0.00 40.03 3.85
3467 4810 6.932356 ATATAAGATGTTTGCAGTGGACTG 57.068 37.500 2.19 2.19 46.40 3.51
3468 4811 2.645838 AGATGTTTGCAGTGGACTGT 57.354 45.000 8.54 0.00 45.45 3.55
3469 4812 2.936202 AGATGTTTGCAGTGGACTGTT 58.064 42.857 8.54 0.00 45.45 3.16
3470 4813 2.880890 AGATGTTTGCAGTGGACTGTTC 59.119 45.455 8.54 0.00 45.45 3.18
3471 4814 2.121291 TGTTTGCAGTGGACTGTTCA 57.879 45.000 8.54 0.00 45.45 3.18
3472 4815 2.441410 TGTTTGCAGTGGACTGTTCAA 58.559 42.857 8.54 2.78 45.45 2.69
3473 4816 2.423185 TGTTTGCAGTGGACTGTTCAAG 59.577 45.455 8.54 0.00 45.45 3.02
3474 4817 2.418368 TTGCAGTGGACTGTTCAAGT 57.582 45.000 8.54 0.00 45.45 3.16
3475 4818 3.552132 TTGCAGTGGACTGTTCAAGTA 57.448 42.857 8.54 0.00 45.45 2.24
3476 4819 3.769739 TGCAGTGGACTGTTCAAGTAT 57.230 42.857 8.54 0.00 45.45 2.12
3477 4820 4.085357 TGCAGTGGACTGTTCAAGTATT 57.915 40.909 8.54 0.00 45.45 1.89
3478 4821 4.065088 TGCAGTGGACTGTTCAAGTATTC 58.935 43.478 8.54 0.00 45.45 1.75
3479 4822 3.437049 GCAGTGGACTGTTCAAGTATTCC 59.563 47.826 8.54 0.00 45.45 3.01
3480 4823 4.003648 CAGTGGACTGTTCAAGTATTCCC 58.996 47.826 0.00 0.00 40.07 3.97
3481 4824 3.910627 AGTGGACTGTTCAAGTATTCCCT 59.089 43.478 0.00 0.00 40.07 4.20
3482 4825 4.020128 AGTGGACTGTTCAAGTATTCCCTC 60.020 45.833 0.00 0.00 40.07 4.30
3483 4826 3.263425 TGGACTGTTCAAGTATTCCCTCC 59.737 47.826 0.00 0.00 40.07 4.30
3484 4827 3.522553 GACTGTTCAAGTATTCCCTCCG 58.477 50.000 0.00 0.00 40.07 4.63
3485 4828 2.904434 ACTGTTCAAGTATTCCCTCCGT 59.096 45.455 0.00 0.00 37.36 4.69
3486 4829 3.056035 ACTGTTCAAGTATTCCCTCCGTC 60.056 47.826 0.00 0.00 37.36 4.79
3487 4830 2.235402 TGTTCAAGTATTCCCTCCGTCC 59.765 50.000 0.00 0.00 0.00 4.79
3488 4831 1.492764 TCAAGTATTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
3489 4832 1.200519 CAAGTATTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
3490 4833 1.557832 CAAGTATTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
3491 4834 1.961133 AGTATTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3492 4835 2.271777 AGTATTCCCTCCGTCCCAAAA 58.728 47.619 0.00 0.00 0.00 2.44
3493 4836 2.850568 AGTATTCCCTCCGTCCCAAAAT 59.149 45.455 0.00 0.00 0.00 1.82
3494 4837 4.042174 AGTATTCCCTCCGTCCCAAAATA 58.958 43.478 0.00 0.00 0.00 1.40
3495 4838 4.475747 AGTATTCCCTCCGTCCCAAAATAA 59.524 41.667 0.00 0.00 0.00 1.40
3496 4839 3.359695 TTCCCTCCGTCCCAAAATAAG 57.640 47.619 0.00 0.00 0.00 1.73
3497 4840 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
3498 4841 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3499 4842 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3500 4843 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3501 4844 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3502 4845 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3503 4846 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3504 4847 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3505 4848 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3506 4849 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3507 4850 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3508 4851 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3509 4852 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3510 4853 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3511 4854 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3512 4855 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3513 4856 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3516 4859 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
3517 4860 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
3518 4861 6.163135 AGTGTCTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
3519 4862 6.583562 AGTGTCTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
3520 4863 7.723324 AGTGTCTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
3521 4864 7.868415 AGTGTCTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
3522 4865 7.652507 GTGTCTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
3523 4866 8.853126 TGTCTCAACTTTGTACTAGCTTTAGTA 58.147 33.333 0.00 0.00 0.00 1.82
3548 4891 8.429493 ACAAAGTTGTACTAAGGTTAAGACAC 57.571 34.615 0.00 0.00 40.16 3.67
3549 4892 8.262933 ACAAAGTTGTACTAAGGTTAAGACACT 58.737 33.333 0.00 0.00 40.16 3.55
3550 4893 9.106070 CAAAGTTGTACTAAGGTTAAGACACTT 57.894 33.333 0.00 0.00 0.00 3.16
3558 4901 8.631480 ACTAAGGTTAAGACACTTATTTTGGG 57.369 34.615 0.00 0.00 0.00 4.12
3559 4902 8.442374 ACTAAGGTTAAGACACTTATTTTGGGA 58.558 33.333 0.00 0.00 0.00 4.37
3560 4903 7.520451 AAGGTTAAGACACTTATTTTGGGAC 57.480 36.000 0.00 0.00 0.00 4.46
3561 4904 5.704053 AGGTTAAGACACTTATTTTGGGACG 59.296 40.000 0.00 0.00 0.00 4.79
3562 4905 5.106436 GGTTAAGACACTTATTTTGGGACGG 60.106 44.000 0.00 0.00 0.00 4.79
3563 4906 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
3564 4907 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3565 4908 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3566 4909 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3567 4910 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3568 4911 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3569 4912 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3570 4913 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3571 4914 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
3572 4915 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
3573 4916 2.852714 TTGGGACGGAGGGAGTATTA 57.147 50.000 0.00 0.00 0.00 0.98
3762 7429 9.520515 AATCATTACTGAACTAACCAATTCTGT 57.479 29.630 0.00 0.00 39.45 3.41
3920 7591 3.885297 CAGTATAAAATCTGCACCCTGGG 59.115 47.826 12.28 12.28 0.00 4.45
4002 7677 1.837439 AGGCCATACAAGAATCCGTCA 59.163 47.619 5.01 0.00 0.00 4.35
4129 7807 2.482494 AGGGTTGGGAGATAGAACTGG 58.518 52.381 0.00 0.00 0.00 4.00
4217 7895 2.290960 GGTTGTTGTATCTGGAAGGCCT 60.291 50.000 0.00 0.00 34.31 5.19
4223 7901 2.026262 TGTATCTGGAAGGCCTTTGGTC 60.026 50.000 21.54 6.53 34.31 4.02
4623 8337 8.341892 TGTTGCAAATTATGGTGTATGTAAGA 57.658 30.769 0.00 0.00 0.00 2.10
4739 9212 7.544566 GTCGAACCTATTTACTTGACTGATTGA 59.455 37.037 0.00 0.00 0.00 2.57
4748 9221 9.696917 ATTTACTTGACTGATTGATTTTGGTTC 57.303 29.630 0.00 0.00 0.00 3.62
4849 9322 6.843069 TTTAGCTGCAAAAGAAAATTGGTC 57.157 33.333 1.02 0.00 0.00 4.02
4867 9340 4.951254 TGGTCGATTCTTGTCAACTTACA 58.049 39.130 0.00 0.00 0.00 2.41
4868 9341 4.988540 TGGTCGATTCTTGTCAACTTACAG 59.011 41.667 0.00 0.00 0.00 2.74
4912 9396 3.118261 TGATATTTGGAGACTGGACTGCC 60.118 47.826 0.00 0.00 0.00 4.85
4917 9401 1.323271 GGAGACTGGACTGCCGATGA 61.323 60.000 0.00 0.00 36.79 2.92
4962 9446 7.624360 ACAACTGTCAGTCTGAATGTTTTTA 57.376 32.000 5.82 0.00 0.00 1.52
5229 9716 1.070134 GATGCTGGTGGCCGTCTTATA 59.930 52.381 0.00 0.00 40.92 0.98
5237 9724 6.567891 GCTGGTGGCCGTCTTATAAATTTATC 60.568 42.308 13.95 0.00 34.27 1.75
5238 9725 6.358178 TGGTGGCCGTCTTATAAATTTATCA 58.642 36.000 13.95 3.06 0.00 2.15
5239 9726 6.261381 TGGTGGCCGTCTTATAAATTTATCAC 59.739 38.462 13.95 12.31 0.00 3.06
5240 9727 6.261381 GGTGGCCGTCTTATAAATTTATCACA 59.739 38.462 13.95 0.00 0.00 3.58
5241 9728 7.040686 GGTGGCCGTCTTATAAATTTATCACAT 60.041 37.037 13.95 0.00 0.00 3.21
5265 9752 3.619929 ACAAGTGTTGACGAACTGGTAAC 59.380 43.478 0.00 0.00 28.45 2.50
5276 9763 0.763035 ACTGGTAACCTGGTGTCCAC 59.237 55.000 16.04 6.03 0.00 4.02
5391 9992 5.422214 AAATTACACTTCATCCGTCTCCT 57.578 39.130 0.00 0.00 0.00 3.69
5396 9997 5.422214 ACACTTCATCCGTCTCCTAAAAT 57.578 39.130 0.00 0.00 0.00 1.82
5400 10001 7.042335 CACTTCATCCGTCTCCTAAAATAAGT 58.958 38.462 0.00 0.00 0.00 2.24
5401 10002 7.549488 CACTTCATCCGTCTCCTAAAATAAGTT 59.451 37.037 0.00 0.00 0.00 2.66
5442 10043 2.598589 CATGATGCAAAGTTTGACCGG 58.401 47.619 19.82 0.00 0.00 5.28
5471 10073 5.176407 TGGAAAAACTATCAACAACCACG 57.824 39.130 0.00 0.00 0.00 4.94
5545 10147 9.883142 ATAAGTCTTTCTAGAGATTCCAACAAG 57.117 33.333 0.00 0.00 0.00 3.16
5546 10148 7.309770 AGTCTTTCTAGAGATTCCAACAAGT 57.690 36.000 0.00 0.00 0.00 3.16
5553 10155 4.810790 AGAGATTCCAACAAGTGACTACG 58.189 43.478 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.741327 GCCGCCATCTGCAAATCCAT 61.741 55.000 0.00 0.00 41.33 3.41
12 13 1.759299 ATGGCCGCCATCTGCAAAT 60.759 52.632 19.79 0.00 40.74 2.32
14 15 3.142162 CATGGCCGCCATCTGCAA 61.142 61.111 22.62 0.00 43.15 4.08
25 26 4.740822 AAGACCACCCGCATGGCC 62.741 66.667 0.00 0.00 44.33 5.36
32 33 0.249398 ATCGGAAAGAAGACCACCCG 59.751 55.000 0.00 0.00 38.41 5.28
36 37 1.974957 TCCACATCGGAAAGAAGACCA 59.025 47.619 0.00 0.00 42.52 4.02
53 54 2.361992 CTGCCATGGCTTGCTCCA 60.362 61.111 35.53 14.21 42.51 3.86
56 57 2.678934 CCACTGCCATGGCTTGCT 60.679 61.111 35.53 13.62 42.51 3.91
64 65 2.115910 CACCACCACCACTGCCAT 59.884 61.111 0.00 0.00 0.00 4.40
68 69 1.002134 GGATCCACCACCACCACTG 60.002 63.158 6.95 0.00 38.79 3.66
91 100 7.335924 TCCAACTTATGAGCCTAATAACAACAC 59.664 37.037 0.00 0.00 0.00 3.32
97 106 7.297936 TCGATCCAACTTATGAGCCTAATAA 57.702 36.000 0.00 0.00 0.00 1.40
100 109 5.070446 ACATCGATCCAACTTATGAGCCTAA 59.930 40.000 0.00 0.00 0.00 2.69
101 110 4.588951 ACATCGATCCAACTTATGAGCCTA 59.411 41.667 0.00 0.00 0.00 3.93
102 111 3.389329 ACATCGATCCAACTTATGAGCCT 59.611 43.478 0.00 0.00 0.00 4.58
103 112 3.733337 ACATCGATCCAACTTATGAGCC 58.267 45.455 0.00 0.00 0.00 4.70
104 113 3.743396 GGACATCGATCCAACTTATGAGC 59.257 47.826 0.00 0.00 38.77 4.26
105 114 4.948847 TGGACATCGATCCAACTTATGAG 58.051 43.478 5.25 0.00 46.08 2.90
120 129 2.906354 ACGCCATAGAACTTGGACATC 58.094 47.619 0.00 0.00 36.26 3.06
149 158 1.335132 GCCCGTGGATAGACCTTCCA 61.335 60.000 0.00 0.00 40.96 3.53
151 160 0.389757 GAGCCCGTGGATAGACCTTC 59.610 60.000 0.00 0.00 39.86 3.46
152 161 0.032017 AGAGCCCGTGGATAGACCTT 60.032 55.000 0.00 0.00 39.86 3.50
153 162 0.468400 GAGAGCCCGTGGATAGACCT 60.468 60.000 0.00 0.00 39.86 3.85
184 193 5.359009 CACCTAGGTCTGATTTAACCGTAGA 59.641 44.000 12.84 0.00 40.63 2.59
187 196 3.197116 CCACCTAGGTCTGATTTAACCGT 59.803 47.826 12.84 0.00 40.63 4.83
188 197 3.431766 CCCACCTAGGTCTGATTTAACCG 60.432 52.174 12.84 0.00 40.63 4.44
194 203 1.916181 CAACCCCACCTAGGTCTGATT 59.084 52.381 12.84 1.60 36.27 2.57
201 210 1.855451 AACCCCAACCCCACCTAGG 60.855 63.158 7.41 7.41 37.03 3.02
203 212 2.847650 GCAACCCCAACCCCACCTA 61.848 63.158 0.00 0.00 0.00 3.08
205 214 3.844562 ATGCAACCCCAACCCCACC 62.845 63.158 0.00 0.00 0.00 4.61
222 231 5.838521 AGTCAAAAGGAATACACCACCAAAT 59.161 36.000 0.00 0.00 0.00 2.32
223 232 5.205056 AGTCAAAAGGAATACACCACCAAA 58.795 37.500 0.00 0.00 0.00 3.28
226 235 4.390909 CGTAGTCAAAAGGAATACACCACC 59.609 45.833 0.00 0.00 45.07 4.61
231 240 5.375417 TCGTCGTAGTCAAAAGGAATACA 57.625 39.130 0.00 0.00 45.07 2.29
241 251 5.353400 ACATAAGAGTCATCGTCGTAGTCAA 59.647 40.000 0.00 0.00 0.00 3.18
250 260 1.476891 ACCGCACATAAGAGTCATCGT 59.523 47.619 0.00 0.00 0.00 3.73
251 261 1.854743 CACCGCACATAAGAGTCATCG 59.145 52.381 0.00 0.00 0.00 3.84
253 263 2.159043 CCTCACCGCACATAAGAGTCAT 60.159 50.000 0.00 0.00 0.00 3.06
254 264 1.204704 CCTCACCGCACATAAGAGTCA 59.795 52.381 0.00 0.00 0.00 3.41
260 270 1.376683 GCACCCTCACCGCACATAA 60.377 57.895 0.00 0.00 0.00 1.90
261 271 2.238847 GAGCACCCTCACCGCACATA 62.239 60.000 0.00 0.00 38.03 2.29
263 273 4.314440 GAGCACCCTCACCGCACA 62.314 66.667 0.00 0.00 38.03 4.57
267 277 2.124983 CATGGAGCACCCTCACCG 60.125 66.667 0.00 0.00 39.96 4.94
287 297 0.539901 ACACACCGGTAGAGCACTCT 60.540 55.000 6.87 5.36 43.40 3.24
299 309 0.029300 CACAAGGCAAAGACACACCG 59.971 55.000 0.00 0.00 0.00 4.94
300 310 1.388547 TCACAAGGCAAAGACACACC 58.611 50.000 0.00 0.00 0.00 4.16
302 312 1.337703 GCATCACAAGGCAAAGACACA 59.662 47.619 0.00 0.00 30.94 3.72
306 316 0.112995 AGGGCATCACAAGGCAAAGA 59.887 50.000 0.00 0.00 32.63 2.52
309 319 0.469705 ACAAGGGCATCACAAGGCAA 60.470 50.000 0.00 0.00 32.63 4.52
354 364 0.948623 CGCGGTTGAGATGACACCAA 60.949 55.000 0.00 0.00 0.00 3.67
362 372 1.815421 GGTCATGCGCGGTTGAGAT 60.815 57.895 8.83 0.00 0.00 2.75
364 374 1.577328 AAAGGTCATGCGCGGTTGAG 61.577 55.000 8.83 0.00 0.00 3.02
367 377 1.577328 CTGAAAGGTCATGCGCGGTT 61.577 55.000 8.83 0.00 31.85 4.44
397 407 2.364324 ACTACCTCACGACACATGTGTT 59.636 45.455 31.03 14.97 45.05 3.32
413 426 2.232452 ACACATCAGAGACTGCACTACC 59.768 50.000 0.00 0.00 0.00 3.18
420 433 1.802960 GGCAACACACATCAGAGACTG 59.197 52.381 0.00 0.00 0.00 3.51
421 434 1.696336 AGGCAACACACATCAGAGACT 59.304 47.619 0.00 0.00 41.41 3.24
422 435 2.175878 AGGCAACACACATCAGAGAC 57.824 50.000 0.00 0.00 41.41 3.36
423 436 2.936919 AAGGCAACACACATCAGAGA 57.063 45.000 0.00 0.00 41.41 3.10
424 437 2.096069 CGAAAGGCAACACACATCAGAG 60.096 50.000 0.00 0.00 41.41 3.35
425 438 1.872952 CGAAAGGCAACACACATCAGA 59.127 47.619 0.00 0.00 41.41 3.27
426 439 2.320805 CGAAAGGCAACACACATCAG 57.679 50.000 0.00 0.00 41.41 2.90
482 520 4.218417 ACCTTTGAAGACACATGTATTGCC 59.782 41.667 0.00 0.00 28.51 4.52
483 521 5.376854 ACCTTTGAAGACACATGTATTGC 57.623 39.130 0.00 0.00 28.51 3.56
485 523 6.147821 CGAGAACCTTTGAAGACACATGTATT 59.852 38.462 0.00 0.00 31.40 1.89
488 526 3.809832 CGAGAACCTTTGAAGACACATGT 59.190 43.478 0.00 0.00 0.00 3.21
491 529 2.432874 TCCGAGAACCTTTGAAGACACA 59.567 45.455 0.00 0.00 0.00 3.72
492 530 3.060602 CTCCGAGAACCTTTGAAGACAC 58.939 50.000 0.00 0.00 0.00 3.67
499 682 1.608283 GGGTCACTCCGAGAACCTTTG 60.608 57.143 18.20 1.26 39.82 2.77
528 711 1.001487 CACACGCATGCAGAGGAAAAA 60.001 47.619 19.57 0.00 0.00 1.94
531 714 0.320050 TACACACGCATGCAGAGGAA 59.680 50.000 19.57 0.00 0.00 3.36
532 715 0.536724 ATACACACGCATGCAGAGGA 59.463 50.000 19.57 5.18 0.00 3.71
534 717 1.931906 AGATACACACGCATGCAGAG 58.068 50.000 19.57 10.55 0.00 3.35
535 718 2.385013 AAGATACACACGCATGCAGA 57.615 45.000 19.57 0.00 0.00 4.26
536 719 3.120234 TCAAAAGATACACACGCATGCAG 60.120 43.478 19.57 12.10 0.00 4.41
540 732 5.689383 AAAGTCAAAAGATACACACGCAT 57.311 34.783 0.00 0.00 0.00 4.73
550 742 7.394641 GGGATTACAGGAGAAAAGTCAAAAGAT 59.605 37.037 0.00 0.00 0.00 2.40
558 750 2.910977 ACGGGGATTACAGGAGAAAAGT 59.089 45.455 0.00 0.00 0.00 2.66
570 762 3.533720 CGGAGCTCACGGGGATTA 58.466 61.111 17.19 0.00 0.00 1.75
636 828 9.598517 TCCTTATGTGAATATTTTTCATTTGCC 57.401 29.630 0.00 0.00 0.00 4.52
704 896 4.377226 GCATTAAGCATTGCAAGCGAAAAA 60.377 37.500 11.91 4.52 44.79 1.94
705 897 3.123284 GCATTAAGCATTGCAAGCGAAAA 59.877 39.130 11.91 6.66 44.79 2.29
706 898 2.667481 GCATTAAGCATTGCAAGCGAAA 59.333 40.909 11.91 8.83 44.79 3.46
738 930 5.755861 GGTGTCGAATTTTCCCATTTGAAAA 59.244 36.000 1.87 1.87 45.39 2.29
739 931 5.069781 AGGTGTCGAATTTTCCCATTTGAAA 59.930 36.000 0.00 0.00 29.81 2.69
740 932 4.586841 AGGTGTCGAATTTTCCCATTTGAA 59.413 37.500 0.00 0.00 29.81 2.69
741 933 4.022416 CAGGTGTCGAATTTTCCCATTTGA 60.022 41.667 0.00 0.00 0.00 2.69
742 934 4.236935 CAGGTGTCGAATTTTCCCATTTG 58.763 43.478 0.00 0.00 0.00 2.32
749 941 2.151202 TGAGCCAGGTGTCGAATTTTC 58.849 47.619 0.00 0.00 0.00 2.29
765 957 1.003355 TTGGTGTGCTAGGCTGAGC 60.003 57.895 0.00 0.00 43.16 4.26
771 963 4.160439 TCTCTCTTATGTTGGTGTGCTAGG 59.840 45.833 0.00 0.00 0.00 3.02
773 965 5.738619 TTCTCTCTTATGTTGGTGTGCTA 57.261 39.130 0.00 0.00 0.00 3.49
780 972 8.523658 TCGGTATGATATTCTCTCTTATGTTGG 58.476 37.037 0.00 0.00 0.00 3.77
788 981 9.482627 GTTTGATTTCGGTATGATATTCTCTCT 57.517 33.333 0.00 0.00 0.00 3.10
804 997 8.750416 TCATGTGTTTTAATGTGTTTGATTTCG 58.250 29.630 0.00 0.00 0.00 3.46
809 1002 9.429359 AGTTTTCATGTGTTTTAATGTGTTTGA 57.571 25.926 0.00 0.00 0.00 2.69
891 1084 8.385898 ACTTGGAATTTCACGTGTTAATAGAA 57.614 30.769 16.51 0.00 0.00 2.10
903 1096 5.660460 ACCTGTTTGAACTTGGAATTTCAC 58.340 37.500 11.38 0.00 31.42 3.18
941 1134 8.875803 CCGCTCGGCACTATTTATTATATTAAA 58.124 33.333 0.00 3.06 0.00 1.52
947 1140 4.267349 ACCGCTCGGCACTATTTATTAT 57.733 40.909 8.41 0.00 39.32 1.28
959 1226 0.739813 AATGACACTTACCGCTCGGC 60.740 55.000 8.41 0.00 39.32 5.54
960 1227 2.572191 TAATGACACTTACCGCTCGG 57.428 50.000 6.79 6.79 42.03 4.63
961 1228 6.764877 ATAAATAATGACACTTACCGCTCG 57.235 37.500 0.00 0.00 0.00 5.03
964 1232 6.910433 CCACAATAAATAATGACACTTACCGC 59.090 38.462 0.00 0.00 0.00 5.68
993 1261 9.545105 AAATTCATTACAAGAGACATGCAAAAA 57.455 25.926 0.00 0.00 0.00 1.94
996 1264 9.791820 CATAAATTCATTACAAGAGACATGCAA 57.208 29.630 0.00 0.00 0.00 4.08
997 1265 8.959548 ACATAAATTCATTACAAGAGACATGCA 58.040 29.630 0.00 0.00 0.00 3.96
998 1266 9.793252 AACATAAATTCATTACAAGAGACATGC 57.207 29.630 0.00 0.00 0.00 4.06
1020 1288 7.496591 AGCATGTGAAATTTCAAGTTCAAACAT 59.503 29.630 22.07 14.82 43.48 2.71
1050 1318 6.383147 TCGAAAGTTTAGGAGGGTGATATTCT 59.617 38.462 0.00 0.00 0.00 2.40
1089 1406 1.782044 CGGAAACCAAGTTGCAATGG 58.218 50.000 16.02 16.02 42.60 3.16
1146 1463 2.743183 GCCACTTACAGATAGCAGGTGG 60.743 54.545 0.00 0.00 43.65 4.61
1147 1464 2.555199 GCCACTTACAGATAGCAGGTG 58.445 52.381 0.00 0.00 0.00 4.00
1648 2030 2.493675 TCATGTACAGTGAGAGGTGAGC 59.506 50.000 0.33 0.00 0.00 4.26
1659 2041 0.669318 CAACGGGCGTCATGTACAGT 60.669 55.000 0.33 0.00 0.00 3.55
1662 2044 1.356527 GGTCAACGGGCGTCATGTAC 61.357 60.000 0.00 0.00 0.00 2.90
1665 2047 2.358125 TGGTCAACGGGCGTCATG 60.358 61.111 0.00 0.00 0.00 3.07
1754 2136 1.157585 GGAAGGAAGGAAGTCAACGC 58.842 55.000 0.00 0.00 0.00 4.84
1884 2266 6.403049 TGATTCGGATGCTCTTTTTGTACTA 58.597 36.000 0.00 0.00 0.00 1.82
1936 2318 1.511850 CAGACCAAACGCACATCAGA 58.488 50.000 0.00 0.00 0.00 3.27
1960 2342 1.542492 CCTACAGACCTGTACACCGT 58.458 55.000 5.82 0.00 44.42 4.83
1973 2358 1.115930 CCCACCTCGGATCCCTACAG 61.116 65.000 6.06 0.00 36.56 2.74
2117 2502 3.981071 TCTCACCACTGGAATTACCTG 57.019 47.619 0.71 0.00 42.26 4.00
2133 2518 6.931838 ACGGAAATCACACTACTAAATCTCA 58.068 36.000 0.00 0.00 0.00 3.27
2167 3355 1.864082 CCATTTCAACAAACGGGTTGC 59.136 47.619 5.52 0.00 45.98 4.17
2290 3489 2.043227 GATCCTCTCCAAATCCTCCGT 58.957 52.381 0.00 0.00 0.00 4.69
2334 3533 1.524621 CGCCACCCCTTGAGCTATG 60.525 63.158 0.00 0.00 0.00 2.23
2471 3670 6.404184 CCGAGGTTTGCATGAATACAACAATA 60.404 38.462 0.00 0.00 0.00 1.90
2472 3671 5.401550 CGAGGTTTGCATGAATACAACAAT 58.598 37.500 0.00 0.00 0.00 2.71
2474 3673 3.190327 CCGAGGTTTGCATGAATACAACA 59.810 43.478 0.00 0.00 0.00 3.33
2476 3675 2.163412 GCCGAGGTTTGCATGAATACAA 59.837 45.455 0.00 0.00 0.00 2.41
2640 3855 8.896744 CACATGATAACCAATACCATATCCATC 58.103 37.037 0.00 0.00 0.00 3.51
2686 3902 4.647291 ATACAAAAGAACGAGTCGCTTG 57.353 40.909 13.59 10.75 0.00 4.01
2691 3907 8.495949 TGATCAGAAAATACAAAAGAACGAGTC 58.504 33.333 0.00 0.00 0.00 3.36
2695 3911 8.499162 AGACTGATCAGAAAATACAAAAGAACG 58.501 33.333 29.27 0.00 0.00 3.95
2710 3926 9.237187 GGTATCATAATCTGTAGACTGATCAGA 57.763 37.037 29.27 3.89 41.43 3.27
2938 4160 5.986741 TCTAACAATTTCACAGTAACAGCGA 59.013 36.000 0.00 0.00 0.00 4.93
2966 4188 5.048013 TGTGAGACGATAGAAGCAGAAGAAA 60.048 40.000 0.00 0.00 41.38 2.52
2975 4197 6.638873 GTCACCAATATGTGAGACGATAGAAG 59.361 42.308 0.00 0.00 45.40 2.85
3008 4237 8.452989 CTGAAAGGTAAACAATTTAGCACATC 57.547 34.615 11.78 7.74 43.97 3.06
3441 4784 7.699391 CAGTCCACTGCAAACATCTTATATTTG 59.301 37.037 0.00 0.00 37.15 2.32
3459 4802 3.910627 AGGGAATACTTGAACAGTCCACT 59.089 43.478 0.00 0.00 36.88 4.00
3460 4803 4.254492 GAGGGAATACTTGAACAGTCCAC 58.746 47.826 0.00 0.00 36.88 4.02
3461 4804 3.263425 GGAGGGAATACTTGAACAGTCCA 59.737 47.826 0.00 0.00 36.88 4.02
3462 4805 3.679083 CGGAGGGAATACTTGAACAGTCC 60.679 52.174 0.00 0.00 36.88 3.85
3463 4806 3.056035 ACGGAGGGAATACTTGAACAGTC 60.056 47.826 0.00 0.00 36.88 3.51
3464 4807 2.904434 ACGGAGGGAATACTTGAACAGT 59.096 45.455 0.00 0.00 39.87 3.55
3465 4808 3.522553 GACGGAGGGAATACTTGAACAG 58.477 50.000 0.00 0.00 0.00 3.16
3466 4809 2.235402 GGACGGAGGGAATACTTGAACA 59.765 50.000 0.00 0.00 0.00 3.18
3467 4810 2.419713 GGGACGGAGGGAATACTTGAAC 60.420 54.545 0.00 0.00 0.00 3.18
3468 4811 1.835531 GGGACGGAGGGAATACTTGAA 59.164 52.381 0.00 0.00 0.00 2.69
3469 4812 1.273381 TGGGACGGAGGGAATACTTGA 60.273 52.381 0.00 0.00 0.00 3.02
3470 4813 1.200519 TGGGACGGAGGGAATACTTG 58.799 55.000 0.00 0.00 0.00 3.16
3471 4814 1.961133 TTGGGACGGAGGGAATACTT 58.039 50.000 0.00 0.00 0.00 2.24
3472 4815 1.961133 TTTGGGACGGAGGGAATACT 58.039 50.000 0.00 0.00 0.00 2.12
3473 4816 2.793288 TTTTGGGACGGAGGGAATAC 57.207 50.000 0.00 0.00 0.00 1.89
3474 4817 4.475747 ACTTATTTTGGGACGGAGGGAATA 59.524 41.667 0.00 0.00 0.00 1.75
3475 4818 3.268595 ACTTATTTTGGGACGGAGGGAAT 59.731 43.478 0.00 0.00 0.00 3.01
3476 4819 2.645797 ACTTATTTTGGGACGGAGGGAA 59.354 45.455 0.00 0.00 0.00 3.97
3477 4820 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3478 4821 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3479 4822 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3480 4823 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3481 4824 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3482 4825 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3483 4826 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3484 4827 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3485 4828 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
3486 4829 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
3487 4830 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3490 4833 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
3491 4834 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
3492 4835 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
3493 4836 7.286215 AGCTAGTACAAAGTTGAGACACTTA 57.714 36.000 0.00 0.00 35.87 2.24
3494 4837 6.163135 AGCTAGTACAAAGTTGAGACACTT 57.837 37.500 0.00 0.00 38.74 3.16
3495 4838 5.793030 AGCTAGTACAAAGTTGAGACACT 57.207 39.130 0.00 0.00 0.00 3.55
3496 4839 6.846325 AAAGCTAGTACAAAGTTGAGACAC 57.154 37.500 0.00 0.00 0.00 3.67
3497 4840 7.723324 ACTAAAGCTAGTACAAAGTTGAGACA 58.277 34.615 0.00 0.00 36.56 3.41
3522 4865 9.533253 GTGTCTTAACCTTAGTACAACTTTGTA 57.467 33.333 0.00 0.00 42.35 2.41
3523 4866 8.262933 AGTGTCTTAACCTTAGTACAACTTTGT 58.737 33.333 0.00 0.00 44.86 2.83
3524 4867 8.658499 AGTGTCTTAACCTTAGTACAACTTTG 57.342 34.615 0.00 0.00 0.00 2.77
3532 4875 9.729281 CCCAAAATAAGTGTCTTAACCTTAGTA 57.271 33.333 0.00 0.00 0.00 1.82
3533 4876 8.442374 TCCCAAAATAAGTGTCTTAACCTTAGT 58.558 33.333 0.00 0.00 0.00 2.24
3534 4877 8.727910 GTCCCAAAATAAGTGTCTTAACCTTAG 58.272 37.037 0.00 0.00 0.00 2.18
3535 4878 7.388500 CGTCCCAAAATAAGTGTCTTAACCTTA 59.612 37.037 0.00 0.00 0.00 2.69
3536 4879 6.206048 CGTCCCAAAATAAGTGTCTTAACCTT 59.794 38.462 0.00 0.00 0.00 3.50
3537 4880 5.704053 CGTCCCAAAATAAGTGTCTTAACCT 59.296 40.000 0.00 0.00 0.00 3.50
3538 4881 5.106436 CCGTCCCAAAATAAGTGTCTTAACC 60.106 44.000 0.00 0.00 0.00 2.85
3539 4882 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
3540 4883 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
3541 4884 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
3542 4885 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3543 4886 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3544 4887 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3545 4888 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3546 4889 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3547 4890 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3548 4891 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3549 4892 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3550 4893 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3551 4894 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3552 4895 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3553 4896 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3554 4897 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3555 4898 4.687262 ATATAATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
3556 4899 6.041751 CCATAATATAATACTCCCTCCGTCCC 59.958 46.154 0.00 0.00 0.00 4.46
3557 4900 6.610425 ACCATAATATAATACTCCCTCCGTCC 59.390 42.308 0.00 0.00 0.00 4.79
3558 4901 7.657023 ACCATAATATAATACTCCCTCCGTC 57.343 40.000 0.00 0.00 0.00 4.79
3559 4902 7.456902 ACAACCATAATATAATACTCCCTCCGT 59.543 37.037 0.00 0.00 0.00 4.69
3560 4903 7.848128 ACAACCATAATATAATACTCCCTCCG 58.152 38.462 0.00 0.00 0.00 4.63
3762 7429 5.798125 TTGTGGCTGAACATAATTTTCCA 57.202 34.783 0.00 0.00 0.00 3.53
4002 7677 3.686016 ACACAACTTCAGTTTCCACACT 58.314 40.909 0.00 0.00 35.83 3.55
4739 9212 4.519540 AATAGCAACAGCGAACCAAAAT 57.480 36.364 0.00 0.00 0.00 1.82
4841 9314 6.391227 AAGTTGACAAGAATCGACCAATTT 57.609 33.333 0.00 0.00 33.96 1.82
4849 9322 4.750098 ACACCTGTAAGTTGACAAGAATCG 59.250 41.667 0.00 0.00 0.00 3.34
4867 9340 2.623889 GCTGGACGATATACTGACACCT 59.376 50.000 0.00 0.00 0.00 4.00
4868 9341 3.014604 GCTGGACGATATACTGACACC 57.985 52.381 0.00 0.00 0.00 4.16
4912 9396 8.992835 TTCTGATTATTCTATGGACATCATCG 57.007 34.615 0.00 0.00 37.30 3.84
4917 9401 9.911788 AGTTGTTTCTGATTATTCTATGGACAT 57.088 29.630 0.00 0.00 0.00 3.06
4948 9432 7.018235 GCTAAGAGCTGTAAAAACATTCAGAC 58.982 38.462 0.00 0.00 38.45 3.51
5034 9518 3.004126 TGGCCTATGGGAATATGGACT 57.996 47.619 3.32 0.00 33.58 3.85
5036 9520 4.443658 TGTATGGCCTATGGGAATATGGA 58.556 43.478 3.32 0.00 33.58 3.41
5229 9716 7.591057 CGTCAACACTTGTGATGTGATAAATTT 59.409 33.333 7.83 0.00 38.65 1.82
5237 9724 3.309682 AGTTCGTCAACACTTGTGATGTG 59.690 43.478 7.83 4.24 40.87 3.21
5238 9725 3.309682 CAGTTCGTCAACACTTGTGATGT 59.690 43.478 7.83 0.00 34.60 3.06
5239 9726 3.303329 CCAGTTCGTCAACACTTGTGATG 60.303 47.826 7.83 6.24 34.60 3.07
5240 9727 2.872245 CCAGTTCGTCAACACTTGTGAT 59.128 45.455 7.83 0.00 34.60 3.06
5241 9728 2.276201 CCAGTTCGTCAACACTTGTGA 58.724 47.619 7.83 0.00 34.60 3.58
5265 9752 1.001520 TGTTACATCGTGGACACCAGG 59.998 52.381 0.00 0.00 40.34 4.45
5276 9763 7.758076 TGAGAAATGTTACCTACTGTTACATCG 59.242 37.037 0.00 0.00 44.21 3.84
5442 10043 8.984764 GGTTGTTGATAGTTTTTCCAATAAACC 58.015 33.333 0.00 0.00 36.40 3.27
5519 10121 9.883142 CTTGTTGGAATCTCTAGAAAGACTTAT 57.117 33.333 0.00 0.00 0.00 1.73
5521 10123 7.659390 CACTTGTTGGAATCTCTAGAAAGACTT 59.341 37.037 0.00 0.00 0.00 3.01
5529 10131 6.030849 CGTAGTCACTTGTTGGAATCTCTAG 58.969 44.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.