Multiple sequence alignment - TraesCS1A01G278900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G278900 chr1A 100.000 3384 0 0 1 3384 474452400 474449017 0.000000e+00 6250.0
1 TraesCS1A01G278900 chr1A 90.909 88 8 0 18 105 545303702 545303615 5.930000e-23 119.0
2 TraesCS1A01G278900 chr1B 86.466 1692 102 46 765 2398 499895578 499897200 0.000000e+00 1738.0
3 TraesCS1A01G278900 chr1B 82.494 834 69 30 2615 3384 499899760 499900580 0.000000e+00 660.0
4 TraesCS1A01G278900 chr1B 83.105 219 12 5 405 601 499894960 499895175 3.470000e-40 176.0
5 TraesCS1A01G278900 chr1B 85.000 120 9 6 2443 2561 499897317 499897428 2.760000e-21 113.0
6 TraesCS1A01G278900 chr1B 92.593 54 3 1 593 646 499895387 499895439 3.620000e-10 76.8
7 TraesCS1A01G278900 chr1B 100.000 30 0 0 2410 2439 499897257 499897286 4.720000e-04 56.5
8 TraesCS1A01G278900 chr1D 84.355 1387 105 46 281 1601 375648141 375646801 0.000000e+00 1256.0
9 TraesCS1A01G278900 chr1D 89.987 769 39 15 1670 2417 375646701 375645950 0.000000e+00 959.0
10 TraesCS1A01G278900 chr1D 82.932 873 72 29 2575 3384 375645715 375644857 0.000000e+00 715.0
11 TraesCS1A01G278900 chr1D 80.081 246 30 10 18 245 489327415 489327171 7.510000e-37 165.0
12 TraesCS1A01G278900 chr1D 80.081 246 30 10 18 245 489435139 489434895 7.510000e-37 165.0
13 TraesCS1A01G278900 chr1D 100.000 34 0 0 2410 2443 375645934 375645901 2.820000e-06 63.9
14 TraesCS1A01G278900 chr3A 77.451 816 123 41 1119 1922 616493167 616492401 6.710000e-117 431.0
15 TraesCS1A01G278900 chr3A 86.391 169 16 5 1689 1852 32385658 32385492 9.650000e-41 178.0
16 TraesCS1A01G278900 chr3A 88.636 88 10 0 18 105 429619352 429619265 1.280000e-19 108.0
17 TraesCS1A01G278900 chr3D 93.689 206 10 1 1672 1874 474216234 474216029 4.240000e-79 305.0
18 TraesCS1A01G278900 chr3D 86.982 169 15 5 1689 1852 23195788 23195622 2.070000e-42 183.0
19 TraesCS1A01G278900 chr3D 80.081 246 31 10 18 245 416407640 416407885 2.090000e-37 167.0
20 TraesCS1A01G278900 chr3D 81.319 182 24 9 1689 1868 23173712 23173539 4.550000e-29 139.0
21 TraesCS1A01G278900 chr3D 85.496 131 18 1 117 246 525655757 525655887 5.890000e-28 135.0
22 TraesCS1A01G278900 chr3B 87.402 254 23 4 1672 1922 630401505 630401258 1.990000e-72 283.0
23 TraesCS1A01G278900 chr3B 86.982 169 15 5 1689 1852 40908881 40908715 2.070000e-42 183.0
24 TraesCS1A01G278900 chr7D 81.982 222 35 3 32 251 169916944 169917162 2.070000e-42 183.0
25 TraesCS1A01G278900 chr7D 89.062 128 14 0 117 244 587554064 587553937 3.500000e-35 159.0
26 TraesCS1A01G278900 chr7D 85.821 134 19 0 117 250 8593361 8593228 3.520000e-30 143.0
27 TraesCS1A01G278900 chr2D 79.918 244 32 7 18 244 160597366 160597609 2.700000e-36 163.0
28 TraesCS1A01G278900 chr7A 79.447 253 31 11 18 249 258410997 258410745 3.500000e-35 159.0
29 TraesCS1A01G278900 chr6A 79.476 229 44 2 18 243 535860567 535860339 3.500000e-35 159.0
30 TraesCS1A01G278900 chr6A 78.776 245 35 8 18 245 601962117 601961873 7.570000e-32 148.0
31 TraesCS1A01G278900 chr5A 79.208 202 36 5 49 245 680105181 680105381 5.890000e-28 135.0
32 TraesCS1A01G278900 chr7B 76.562 256 30 13 18 247 36605574 36605323 2.760000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G278900 chr1A 474449017 474452400 3383 True 6250.000 6250 100.000000 1 3384 1 chr1A.!!$R1 3383
1 TraesCS1A01G278900 chr1B 499894960 499900580 5620 False 470.050 1738 88.276333 405 3384 6 chr1B.!!$F1 2979
2 TraesCS1A01G278900 chr1D 375644857 375648141 3284 True 748.475 1256 89.318500 281 3384 4 chr1D.!!$R3 3103
3 TraesCS1A01G278900 chr3A 616492401 616493167 766 True 431.000 431 77.451000 1119 1922 1 chr3A.!!$R3 803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.024238 CAGTCTTTCGAATGCGCTCG 59.976 55.0 9.73 11.28 40.25 5.03 F
179 180 0.037326 AGATAGGGTGTGCGTGTGTG 60.037 55.0 0.00 0.00 0.00 3.82 F
1627 1991 0.035820 TCGATTGCCTAACCCACACC 60.036 55.0 0.00 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 1972 0.035820 GGTGTGGGTTAGGCAATCGA 60.036 55.0 0.0 0.0 0.0 3.59 R
1668 2032 0.392193 CATCAAGAAGAGCCTGCGGT 60.392 55.0 0.0 0.0 0.0 5.68 R
2878 5711 0.462759 GGCCGAGGAGGAATCACTTG 60.463 60.0 0.0 0.0 45.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.745018 TCTCAAGTTCCTTAGAATTCAAATCAT 57.255 29.630 8.44 0.00 33.67 2.45
27 28 9.784680 CTCAAGTTCCTTAGAATTCAAATCATG 57.215 33.333 8.44 0.00 33.67 3.07
28 29 9.519191 TCAAGTTCCTTAGAATTCAAATCATGA 57.481 29.630 8.44 0.00 33.67 3.07
31 32 9.129532 AGTTCCTTAGAATTCAAATCATGATCC 57.870 33.333 9.06 0.00 38.03 3.36
32 33 9.129532 GTTCCTTAGAATTCAAATCATGATCCT 57.870 33.333 9.06 0.00 38.03 3.24
33 34 9.705103 TTCCTTAGAATTCAAATCATGATCCTT 57.295 29.630 9.06 0.00 38.03 3.36
34 35 9.128404 TCCTTAGAATTCAAATCATGATCCTTG 57.872 33.333 9.06 10.95 38.03 3.61
35 36 7.866393 CCTTAGAATTCAAATCATGATCCTTGC 59.134 37.037 9.06 0.00 38.03 4.01
36 37 6.785337 AGAATTCAAATCATGATCCTTGCA 57.215 33.333 9.06 1.78 38.03 4.08
37 38 7.361457 AGAATTCAAATCATGATCCTTGCAT 57.639 32.000 9.06 4.18 38.03 3.96
38 39 7.792032 AGAATTCAAATCATGATCCTTGCATT 58.208 30.769 14.11 14.11 38.03 3.56
39 40 8.265055 AGAATTCAAATCATGATCCTTGCATTT 58.735 29.630 9.06 5.47 38.03 2.32
40 41 9.537192 GAATTCAAATCATGATCCTTGCATTTA 57.463 29.630 9.06 0.00 38.03 1.40
43 44 9.893634 TTCAAATCATGATCCTTGCATTTATTT 57.106 25.926 9.06 0.00 38.03 1.40
44 45 9.893634 TCAAATCATGATCCTTGCATTTATTTT 57.106 25.926 9.06 0.00 31.50 1.82
70 71 9.627395 TTAAATTTATTTCAGAATTTTCGGCGA 57.373 25.926 4.99 4.99 36.92 5.54
71 72 8.702163 AAATTTATTTCAGAATTTTCGGCGAT 57.298 26.923 11.76 0.00 33.03 4.58
72 73 7.684062 ATTTATTTCAGAATTTTCGGCGATG 57.316 32.000 11.76 4.79 0.00 3.84
73 74 2.542766 TTCAGAATTTTCGGCGATGC 57.457 45.000 11.76 0.00 0.00 3.91
74 75 0.373370 TCAGAATTTTCGGCGATGCG 59.627 50.000 11.76 0.00 0.00 4.73
85 86 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
86 87 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
87 88 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
88 89 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
89 90 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
90 91 1.153086 GCGCATTCAGTGGGAGGAT 60.153 57.895 0.30 0.00 43.02 3.24
91 92 0.106708 GCGCATTCAGTGGGAGGATA 59.893 55.000 0.30 0.00 43.02 2.59
92 93 1.871080 CGCATTCAGTGGGAGGATAC 58.129 55.000 0.00 0.00 43.02 2.24
93 94 1.869754 CGCATTCAGTGGGAGGATACG 60.870 57.143 0.00 0.00 43.02 3.06
94 95 1.139058 GCATTCAGTGGGAGGATACGT 59.861 52.381 0.00 0.00 46.39 3.57
95 96 2.420129 GCATTCAGTGGGAGGATACGTT 60.420 50.000 0.00 0.00 46.39 3.99
96 97 3.873910 CATTCAGTGGGAGGATACGTTT 58.126 45.455 0.00 0.00 46.39 3.60
97 98 3.604875 TTCAGTGGGAGGATACGTTTC 57.395 47.619 0.00 0.00 46.39 2.78
98 99 2.531771 TCAGTGGGAGGATACGTTTCA 58.468 47.619 8.29 0.00 46.39 2.69
99 100 2.901192 TCAGTGGGAGGATACGTTTCAA 59.099 45.455 8.29 0.00 46.39 2.69
100 101 3.517901 TCAGTGGGAGGATACGTTTCAAT 59.482 43.478 8.29 0.00 46.39 2.57
101 102 3.871594 CAGTGGGAGGATACGTTTCAATC 59.128 47.826 8.29 5.34 46.39 2.67
102 103 2.864343 GTGGGAGGATACGTTTCAATCG 59.136 50.000 8.29 0.00 46.39 3.34
103 104 2.761767 TGGGAGGATACGTTTCAATCGA 59.238 45.455 8.29 0.00 46.39 3.59
104 105 3.121544 GGGAGGATACGTTTCAATCGAC 58.878 50.000 8.29 0.00 46.39 4.20
105 106 3.181478 GGGAGGATACGTTTCAATCGACT 60.181 47.826 8.29 0.00 46.39 4.18
106 107 4.037208 GGGAGGATACGTTTCAATCGACTA 59.963 45.833 8.29 0.00 46.39 2.59
107 108 4.974888 GGAGGATACGTTTCAATCGACTAC 59.025 45.833 8.29 0.00 46.39 2.73
108 109 5.221009 GGAGGATACGTTTCAATCGACTACT 60.221 44.000 8.29 0.00 46.39 2.57
109 110 5.579718 AGGATACGTTTCAATCGACTACTG 58.420 41.667 8.29 0.00 46.39 2.74
110 111 5.125097 AGGATACGTTTCAATCGACTACTGT 59.875 40.000 8.29 0.00 46.39 3.55
111 112 5.229469 GGATACGTTTCAATCGACTACTGTG 59.771 44.000 8.29 0.00 0.00 3.66
112 113 3.973657 ACGTTTCAATCGACTACTGTGT 58.026 40.909 0.00 0.00 0.00 3.72
113 114 5.112220 ACGTTTCAATCGACTACTGTGTA 57.888 39.130 0.00 0.00 0.00 2.90
114 115 4.913924 ACGTTTCAATCGACTACTGTGTAC 59.086 41.667 0.00 0.00 0.00 2.90
115 116 4.028757 CGTTTCAATCGACTACTGTGTACG 59.971 45.833 0.00 0.00 0.00 3.67
116 117 4.754372 TTCAATCGACTACTGTGTACGT 57.246 40.909 0.00 0.00 0.00 3.57
117 118 4.754372 TCAATCGACTACTGTGTACGTT 57.246 40.909 0.00 0.00 0.00 3.99
118 119 5.112220 TCAATCGACTACTGTGTACGTTT 57.888 39.130 0.00 0.00 0.00 3.60
119 120 5.149273 TCAATCGACTACTGTGTACGTTTC 58.851 41.667 0.00 0.00 0.00 2.78
120 121 4.754372 ATCGACTACTGTGTACGTTTCA 57.246 40.909 0.00 0.00 0.00 2.69
121 122 4.550577 TCGACTACTGTGTACGTTTCAA 57.449 40.909 0.00 0.00 0.00 2.69
122 123 4.919206 TCGACTACTGTGTACGTTTCAAA 58.081 39.130 0.00 0.00 0.00 2.69
123 124 4.971830 TCGACTACTGTGTACGTTTCAAAG 59.028 41.667 0.00 0.79 0.00 2.77
124 125 4.736793 CGACTACTGTGTACGTTTCAAAGT 59.263 41.667 16.55 16.55 37.22 2.66
125 126 5.331309 CGACTACTGTGTACGTTTCAAAGTG 60.331 44.000 19.64 14.02 34.69 3.16
126 127 5.653507 ACTACTGTGTACGTTTCAAAGTGA 58.346 37.500 19.64 8.46 34.69 3.41
127 128 6.278363 ACTACTGTGTACGTTTCAAAGTGAT 58.722 36.000 19.64 9.55 34.69 3.06
128 129 7.428020 ACTACTGTGTACGTTTCAAAGTGATA 58.572 34.615 19.64 5.87 34.69 2.15
129 130 8.086522 ACTACTGTGTACGTTTCAAAGTGATAT 58.913 33.333 19.64 6.08 34.69 1.63
130 131 7.117241 ACTGTGTACGTTTCAAAGTGATATG 57.883 36.000 13.13 0.00 32.84 1.78
131 132 5.922546 TGTGTACGTTTCAAAGTGATATGC 58.077 37.500 0.00 0.00 0.00 3.14
132 133 5.699001 TGTGTACGTTTCAAAGTGATATGCT 59.301 36.000 0.00 0.00 0.00 3.79
133 134 6.015504 GTGTACGTTTCAAAGTGATATGCTG 58.984 40.000 0.00 0.00 0.00 4.41
134 135 4.685169 ACGTTTCAAAGTGATATGCTGG 57.315 40.909 0.00 0.00 0.00 4.85
135 136 3.119849 ACGTTTCAAAGTGATATGCTGGC 60.120 43.478 0.00 0.00 0.00 4.85
136 137 3.127548 CGTTTCAAAGTGATATGCTGGCT 59.872 43.478 0.00 0.00 0.00 4.75
137 138 4.666237 GTTTCAAAGTGATATGCTGGCTC 58.334 43.478 0.00 0.00 0.00 4.70
138 139 3.632643 TCAAAGTGATATGCTGGCTCA 57.367 42.857 0.00 0.00 0.00 4.26
139 140 3.538591 TCAAAGTGATATGCTGGCTCAG 58.461 45.455 0.00 0.00 34.12 3.35
140 141 3.054875 TCAAAGTGATATGCTGGCTCAGT 60.055 43.478 4.45 0.00 33.43 3.41
141 142 2.906691 AGTGATATGCTGGCTCAGTC 57.093 50.000 4.45 0.00 33.43 3.51
142 143 2.396608 AGTGATATGCTGGCTCAGTCT 58.603 47.619 4.45 0.00 33.43 3.24
143 144 2.770802 AGTGATATGCTGGCTCAGTCTT 59.229 45.455 4.45 0.00 33.43 3.01
144 145 3.199508 AGTGATATGCTGGCTCAGTCTTT 59.800 43.478 4.45 0.00 33.43 2.52
145 146 3.559242 GTGATATGCTGGCTCAGTCTTTC 59.441 47.826 4.45 0.00 33.43 2.62
146 147 2.299993 TATGCTGGCTCAGTCTTTCG 57.700 50.000 4.45 0.00 33.43 3.46
147 148 0.610174 ATGCTGGCTCAGTCTTTCGA 59.390 50.000 4.45 0.00 33.43 3.71
148 149 0.392706 TGCTGGCTCAGTCTTTCGAA 59.607 50.000 0.00 0.00 33.43 3.71
149 150 1.002430 TGCTGGCTCAGTCTTTCGAAT 59.998 47.619 0.00 0.00 33.43 3.34
150 151 1.396301 GCTGGCTCAGTCTTTCGAATG 59.604 52.381 0.00 0.78 36.62 2.67
151 152 1.396301 CTGGCTCAGTCTTTCGAATGC 59.604 52.381 0.00 0.00 35.33 3.56
152 153 0.371645 GGCTCAGTCTTTCGAATGCG 59.628 55.000 0.00 0.00 35.33 4.73
153 154 0.247458 GCTCAGTCTTTCGAATGCGC 60.247 55.000 0.00 0.00 38.52 6.09
154 155 1.354040 CTCAGTCTTTCGAATGCGCT 58.646 50.000 9.73 0.62 35.33 5.92
155 156 1.322936 CTCAGTCTTTCGAATGCGCTC 59.677 52.381 9.73 0.00 35.33 5.03
156 157 0.024238 CAGTCTTTCGAATGCGCTCG 59.976 55.000 9.73 11.28 40.25 5.03
157 158 0.388649 AGTCTTTCGAATGCGCTCGT 60.389 50.000 17.18 0.00 39.84 4.18
158 159 1.135489 AGTCTTTCGAATGCGCTCGTA 60.135 47.619 17.18 6.61 39.84 3.43
159 160 1.852895 GTCTTTCGAATGCGCTCGTAT 59.147 47.619 17.18 0.00 39.84 3.06
160 161 3.040795 GTCTTTCGAATGCGCTCGTATA 58.959 45.455 17.18 3.71 39.84 1.47
161 162 3.118157 GTCTTTCGAATGCGCTCGTATAG 59.882 47.826 17.18 12.79 39.84 1.31
162 163 3.002965 TCTTTCGAATGCGCTCGTATAGA 59.997 43.478 17.18 14.44 39.84 1.98
163 164 3.554259 TTCGAATGCGCTCGTATAGAT 57.446 42.857 17.18 0.00 39.84 1.98
164 165 4.673534 TTCGAATGCGCTCGTATAGATA 57.326 40.909 17.18 0.00 39.84 1.98
165 166 4.260334 TCGAATGCGCTCGTATAGATAG 57.740 45.455 17.18 0.00 39.84 2.08
166 167 3.063588 TCGAATGCGCTCGTATAGATAGG 59.936 47.826 17.18 0.00 39.84 2.57
167 168 3.696898 GAATGCGCTCGTATAGATAGGG 58.303 50.000 9.73 0.00 0.00 3.53
168 169 2.195741 TGCGCTCGTATAGATAGGGT 57.804 50.000 9.73 0.00 0.00 4.34
169 170 1.810755 TGCGCTCGTATAGATAGGGTG 59.189 52.381 9.73 0.00 0.00 4.61
170 171 1.811359 GCGCTCGTATAGATAGGGTGT 59.189 52.381 0.00 0.00 0.00 4.16
171 172 2.414293 GCGCTCGTATAGATAGGGTGTG 60.414 54.545 0.00 0.00 0.00 3.82
172 173 2.414293 CGCTCGTATAGATAGGGTGTGC 60.414 54.545 0.00 0.00 0.00 4.57
173 174 2.414293 GCTCGTATAGATAGGGTGTGCG 60.414 54.545 0.00 0.00 0.00 5.34
174 175 2.812591 CTCGTATAGATAGGGTGTGCGT 59.187 50.000 0.00 0.00 0.00 5.24
175 176 2.551032 TCGTATAGATAGGGTGTGCGTG 59.449 50.000 0.00 0.00 0.00 5.34
176 177 2.292569 CGTATAGATAGGGTGTGCGTGT 59.707 50.000 0.00 0.00 0.00 4.49
177 178 2.890808 ATAGATAGGGTGTGCGTGTG 57.109 50.000 0.00 0.00 0.00 3.82
178 179 1.552578 TAGATAGGGTGTGCGTGTGT 58.447 50.000 0.00 0.00 0.00 3.72
179 180 0.037326 AGATAGGGTGTGCGTGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
180 181 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
183 184 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
184 185 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
185 186 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
186 187 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
187 188 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
188 189 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
189 190 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
190 191 0.372334 GCGTGTGTGCGTTTATAGGG 59.628 55.000 0.00 0.00 0.00 3.53
191 192 1.999048 CGTGTGTGCGTTTATAGGGA 58.001 50.000 0.00 0.00 0.00 4.20
192 193 2.546778 CGTGTGTGCGTTTATAGGGAT 58.453 47.619 0.00 0.00 0.00 3.85
193 194 2.284150 CGTGTGTGCGTTTATAGGGATG 59.716 50.000 0.00 0.00 0.00 3.51
194 195 3.527533 GTGTGTGCGTTTATAGGGATGA 58.472 45.455 0.00 0.00 0.00 2.92
195 196 3.555956 GTGTGTGCGTTTATAGGGATGAG 59.444 47.826 0.00 0.00 0.00 2.90
196 197 3.196901 TGTGTGCGTTTATAGGGATGAGT 59.803 43.478 0.00 0.00 0.00 3.41
197 198 4.403113 TGTGTGCGTTTATAGGGATGAGTA 59.597 41.667 0.00 0.00 0.00 2.59
198 199 5.069914 TGTGTGCGTTTATAGGGATGAGTAT 59.930 40.000 0.00 0.00 0.00 2.12
199 200 6.265876 TGTGTGCGTTTATAGGGATGAGTATA 59.734 38.462 0.00 0.00 0.00 1.47
200 201 7.039293 TGTGTGCGTTTATAGGGATGAGTATAT 60.039 37.037 0.00 0.00 0.00 0.86
201 202 8.464404 GTGTGCGTTTATAGGGATGAGTATATA 58.536 37.037 0.00 0.00 0.00 0.86
202 203 8.464404 TGTGCGTTTATAGGGATGAGTATATAC 58.536 37.037 4.60 4.60 0.00 1.47
203 204 7.642978 GTGCGTTTATAGGGATGAGTATATACG 59.357 40.741 7.23 7.54 38.50 3.06
204 205 6.636044 GCGTTTATAGGGATGAGTATATACGC 59.364 42.308 16.09 16.09 45.90 4.42
205 206 6.849811 CGTTTATAGGGATGAGTATATACGCG 59.150 42.308 3.53 3.53 33.15 6.01
206 207 7.466455 CGTTTATAGGGATGAGTATATACGCGT 60.466 40.741 19.17 19.17 33.15 6.01
207 208 5.752892 ATAGGGATGAGTATATACGCGTG 57.247 43.478 24.59 0.00 0.00 5.34
208 209 3.418995 AGGGATGAGTATATACGCGTGT 58.581 45.455 24.59 19.31 0.00 4.49
209 210 4.582869 AGGGATGAGTATATACGCGTGTA 58.417 43.478 24.59 21.15 34.45 2.90
210 211 4.394300 AGGGATGAGTATATACGCGTGTAC 59.606 45.833 24.59 20.34 32.26 2.90
211 212 4.154737 GGGATGAGTATATACGCGTGTACA 59.845 45.833 24.59 13.94 32.26 2.90
212 213 5.163683 GGGATGAGTATATACGCGTGTACAT 60.164 44.000 24.59 18.05 32.26 2.29
213 214 5.737757 GGATGAGTATATACGCGTGTACATG 59.262 44.000 24.59 10.89 32.26 3.21
214 215 5.927954 TGAGTATATACGCGTGTACATGA 57.072 39.130 24.59 0.00 32.26 3.07
215 216 5.923665 TGAGTATATACGCGTGTACATGAG 58.076 41.667 24.59 17.71 32.26 2.90
216 217 5.467735 TGAGTATATACGCGTGTACATGAGT 59.532 40.000 24.77 24.77 34.74 3.41
217 218 5.686834 AGTATATACGCGTGTACATGAGTG 58.313 41.667 28.20 17.72 32.67 3.51
218 219 1.556564 ATACGCGTGTACATGAGTGC 58.443 50.000 28.20 13.71 32.67 4.40
219 220 0.524414 TACGCGTGTACATGAGTGCT 59.476 50.000 28.20 9.58 32.67 4.40
220 221 0.319555 ACGCGTGTACATGAGTGCTT 60.320 50.000 21.67 0.00 0.00 3.91
221 222 0.093535 CGCGTGTACATGAGTGCTTG 59.906 55.000 19.38 0.00 0.00 4.01
222 223 0.179215 GCGTGTACATGAGTGCTTGC 60.179 55.000 19.38 0.00 0.00 4.01
223 224 0.093535 CGTGTACATGAGTGCTTGCG 59.906 55.000 9.62 0.00 0.00 4.85
224 225 1.148310 GTGTACATGAGTGCTTGCGT 58.852 50.000 0.00 0.00 0.00 5.24
225 226 1.126846 GTGTACATGAGTGCTTGCGTC 59.873 52.381 0.00 0.00 0.00 5.19
226 227 1.000843 TGTACATGAGTGCTTGCGTCT 59.999 47.619 0.00 0.00 0.00 4.18
227 228 1.391485 GTACATGAGTGCTTGCGTCTG 59.609 52.381 0.00 0.00 0.00 3.51
228 229 0.250038 ACATGAGTGCTTGCGTCTGT 60.250 50.000 0.00 0.00 0.00 3.41
229 230 1.000843 ACATGAGTGCTTGCGTCTGTA 59.999 47.619 0.00 0.00 0.00 2.74
230 231 1.391485 CATGAGTGCTTGCGTCTGTAC 59.609 52.381 0.00 0.00 0.00 2.90
231 232 0.319555 TGAGTGCTTGCGTCTGTACC 60.320 55.000 0.00 0.00 0.00 3.34
232 233 1.344942 GAGTGCTTGCGTCTGTACCG 61.345 60.000 0.00 0.00 0.00 4.02
233 234 1.663702 GTGCTTGCGTCTGTACCGT 60.664 57.895 0.00 0.00 0.00 4.83
234 235 1.663388 TGCTTGCGTCTGTACCGTG 60.663 57.895 0.00 0.00 0.00 4.94
235 236 1.663702 GCTTGCGTCTGTACCGTGT 60.664 57.895 0.00 0.00 0.00 4.49
236 237 1.219522 GCTTGCGTCTGTACCGTGTT 61.220 55.000 0.00 0.00 0.00 3.32
237 238 1.931709 GCTTGCGTCTGTACCGTGTTA 60.932 52.381 0.00 0.00 0.00 2.41
238 239 2.396601 CTTGCGTCTGTACCGTGTTAA 58.603 47.619 0.00 0.00 0.00 2.01
239 240 2.505628 TGCGTCTGTACCGTGTTAAA 57.494 45.000 0.00 0.00 0.00 1.52
240 241 2.819115 TGCGTCTGTACCGTGTTAAAA 58.181 42.857 0.00 0.00 0.00 1.52
241 242 3.193263 TGCGTCTGTACCGTGTTAAAAA 58.807 40.909 0.00 0.00 0.00 1.94
265 266 8.782533 AAAAATCAACGTAATGAGTTTCTCAC 57.217 30.769 14.03 0.00 44.18 3.51
266 267 6.481954 AATCAACGTAATGAGTTTCTCACC 57.518 37.500 1.44 0.00 43.63 4.02
267 268 4.312443 TCAACGTAATGAGTTTCTCACCC 58.688 43.478 1.44 0.00 43.63 4.61
268 269 4.062293 CAACGTAATGAGTTTCTCACCCA 58.938 43.478 1.44 0.00 43.63 4.51
269 270 3.660865 ACGTAATGAGTTTCTCACCCAC 58.339 45.455 1.44 0.74 43.63 4.61
270 271 2.666508 CGTAATGAGTTTCTCACCCACG 59.333 50.000 1.44 8.00 43.63 4.94
271 272 2.185004 AATGAGTTTCTCACCCACGG 57.815 50.000 1.44 0.00 43.63 4.94
272 273 1.056660 ATGAGTTTCTCACCCACGGT 58.943 50.000 1.44 0.00 43.63 4.83
273 274 0.391597 TGAGTTTCTCACCCACGGTC 59.608 55.000 0.00 0.00 35.39 4.79
274 275 0.320508 GAGTTTCTCACCCACGGTCC 60.321 60.000 0.00 0.00 31.02 4.46
275 276 1.052124 AGTTTCTCACCCACGGTCCA 61.052 55.000 0.00 0.00 31.02 4.02
276 277 0.883370 GTTTCTCACCCACGGTCCAC 60.883 60.000 0.00 0.00 31.02 4.02
277 278 1.338890 TTTCTCACCCACGGTCCACA 61.339 55.000 0.00 0.00 31.02 4.17
278 279 1.125093 TTCTCACCCACGGTCCACAT 61.125 55.000 0.00 0.00 31.02 3.21
279 280 1.375908 CTCACCCACGGTCCACATG 60.376 63.158 0.00 0.00 31.02 3.21
280 281 1.826340 CTCACCCACGGTCCACATGA 61.826 60.000 0.00 0.00 31.02 3.07
281 282 1.072332 CACCCACGGTCCACATGAA 59.928 57.895 0.00 0.00 31.02 2.57
282 283 0.322456 CACCCACGGTCCACATGAAT 60.322 55.000 0.00 0.00 31.02 2.57
283 284 1.065782 CACCCACGGTCCACATGAATA 60.066 52.381 0.00 0.00 31.02 1.75
284 285 1.065709 ACCCACGGTCCACATGAATAC 60.066 52.381 0.00 0.00 0.00 1.89
287 288 2.616765 CCACGGTCCACATGAATACCAA 60.617 50.000 0.00 0.00 32.04 3.67
290 291 2.677836 CGGTCCACATGAATACCAACAG 59.322 50.000 0.00 0.00 32.04 3.16
329 330 2.747855 GAAGGCGCCACCAGGAAG 60.748 66.667 31.54 0.00 43.14 3.46
330 331 3.249189 AAGGCGCCACCAGGAAGA 61.249 61.111 31.54 0.00 43.14 2.87
331 332 2.748058 GAAGGCGCCACCAGGAAGAA 62.748 60.000 31.54 0.00 43.14 2.52
332 333 2.747855 GGCGCCACCAGGAAGAAG 60.748 66.667 24.80 0.00 38.86 2.85
343 344 5.312079 CACCAGGAAGAAGAAAAGAGTGAT 58.688 41.667 0.00 0.00 0.00 3.06
349 350 6.203723 AGGAAGAAGAAAAGAGTGATGAAACG 59.796 38.462 0.00 0.00 0.00 3.60
354 355 6.090483 AGAAAAGAGTGATGAAACGAGAGA 57.910 37.500 0.00 0.00 0.00 3.10
361 362 2.497675 TGATGAAACGAGAGAGGAAGGG 59.502 50.000 0.00 0.00 0.00 3.95
368 369 1.410932 CGAGAGAGGAAGGGAGGATGT 60.411 57.143 0.00 0.00 0.00 3.06
378 379 1.780309 AGGGAGGATGTGTGGAAAACA 59.220 47.619 0.00 0.00 39.27 2.83
390 391 4.301637 GTGGAAAACACGAGGAATTGTT 57.698 40.909 0.00 0.00 40.85 2.83
391 392 5.427036 GTGGAAAACACGAGGAATTGTTA 57.573 39.130 0.00 0.00 40.85 2.41
392 393 5.209977 GTGGAAAACACGAGGAATTGTTAC 58.790 41.667 0.00 0.00 40.85 2.50
393 394 5.008316 GTGGAAAACACGAGGAATTGTTACT 59.992 40.000 0.00 0.00 40.85 2.24
395 396 5.432885 AAAACACGAGGAATTGTTACTGG 57.567 39.130 0.00 0.00 0.00 4.00
396 397 3.053831 ACACGAGGAATTGTTACTGGG 57.946 47.619 0.00 0.00 0.00 4.45
397 398 2.635915 ACACGAGGAATTGTTACTGGGA 59.364 45.455 0.00 0.00 0.00 4.37
398 399 3.262420 CACGAGGAATTGTTACTGGGAG 58.738 50.000 0.00 0.00 0.00 4.30
399 400 2.236395 ACGAGGAATTGTTACTGGGAGG 59.764 50.000 0.00 0.00 0.00 4.30
403 404 2.092375 GGAATTGTTACTGGGAGGGAGG 60.092 54.545 0.00 0.00 0.00 4.30
410 411 2.609610 TGGGAGGGAGGGAAACGG 60.610 66.667 0.00 0.00 0.00 4.44
452 458 1.082756 GAGTTTGTTGAGCGCCACG 60.083 57.895 2.29 0.00 0.00 4.94
457 463 2.054140 TTGTTGAGCGCCACGGAAAC 62.054 55.000 2.29 0.46 0.00 2.78
528 547 2.724839 CGGAGCGCGGAATAATAAATGC 60.725 50.000 8.83 0.00 0.00 3.56
529 548 2.414161 GGAGCGCGGAATAATAAATGCC 60.414 50.000 8.83 0.00 0.00 4.40
530 549 1.196808 AGCGCGGAATAATAAATGCCG 59.803 47.619 8.83 0.00 44.47 5.69
538 560 4.379499 GGAATAATAAATGCCGCTGCTACC 60.379 45.833 0.70 0.00 38.71 3.18
641 932 3.274586 ACAGCACAGCACAGCACG 61.275 61.111 0.00 0.00 0.00 5.34
678 972 4.787280 CACCCGCCTCCTCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
679 973 4.467107 ACCCGCCTCCTCCTCCTC 62.467 72.222 0.00 0.00 0.00 3.71
681 975 4.150454 CCGCCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
682 976 2.520741 CGCCTCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
683 977 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
684 978 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
685 979 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
686 980 0.998945 CCTCCTCCTCCTCCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
687 981 0.478507 CTCCTCCTCCTCCTCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
688 982 0.047176 TCCTCCTCCTCCTCCTCTCT 59.953 60.000 0.00 0.00 0.00 3.10
689 983 0.185901 CCTCCTCCTCCTCCTCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
717 1011 2.043450 CGCCCTCTGTCTCTCCCT 60.043 66.667 0.00 0.00 0.00 4.20
720 1014 0.755327 GCCCTCTGTCTCTCCCTCTC 60.755 65.000 0.00 0.00 0.00 3.20
725 1019 1.927569 CTGTCTCTCCCTCTCCCCGA 61.928 65.000 0.00 0.00 0.00 5.14
726 1020 1.306970 GTCTCTCCCTCTCCCCGAA 59.693 63.158 0.00 0.00 0.00 4.30
728 1022 2.042843 TCTCCCTCTCCCCGAAGC 60.043 66.667 0.00 0.00 0.00 3.86
729 1023 2.042435 CTCCCTCTCCCCGAAGCT 60.042 66.667 0.00 0.00 0.00 3.74
730 1024 2.042843 TCCCTCTCCCCGAAGCTC 60.043 66.667 0.00 0.00 0.00 4.09
731 1025 3.532155 CCCTCTCCCCGAAGCTCG 61.532 72.222 0.00 0.00 40.07 5.03
732 1026 4.214327 CCTCTCCCCGAAGCTCGC 62.214 72.222 0.00 0.00 38.82 5.03
733 1027 3.144193 CTCTCCCCGAAGCTCGCT 61.144 66.667 0.00 0.00 38.82 4.93
763 1057 2.383527 GCGGACACAGAAAGCGAGG 61.384 63.158 0.00 0.00 0.00 4.63
825 1135 0.534203 GAGACCGCAAACTCCACCAA 60.534 55.000 0.00 0.00 0.00 3.67
846 1156 1.604378 CCCAATCACCGAGCCTCTT 59.396 57.895 0.00 0.00 0.00 2.85
863 1173 0.097150 CTTCCTTCTTTAAGCGCGCC 59.903 55.000 30.33 10.31 0.00 6.53
1003 1318 3.721706 CCACTGCCACTCCCCCTC 61.722 72.222 0.00 0.00 0.00 4.30
1004 1319 2.608988 CACTGCCACTCCCCCTCT 60.609 66.667 0.00 0.00 0.00 3.69
1005 1320 2.284995 ACTGCCACTCCCCCTCTC 60.285 66.667 0.00 0.00 0.00 3.20
1006 1321 2.040278 CTGCCACTCCCCCTCTCT 59.960 66.667 0.00 0.00 0.00 3.10
1007 1322 1.614824 CTGCCACTCCCCCTCTCTT 60.615 63.158 0.00 0.00 0.00 2.85
1008 1323 1.613630 TGCCACTCCCCCTCTCTTC 60.614 63.158 0.00 0.00 0.00 2.87
1009 1324 1.306568 GCCACTCCCCCTCTCTTCT 60.307 63.158 0.00 0.00 0.00 2.85
1010 1325 1.334384 GCCACTCCCCCTCTCTTCTC 61.334 65.000 0.00 0.00 0.00 2.87
1011 1326 0.338120 CCACTCCCCCTCTCTTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
1025 1340 3.616219 TCTTCTCTTCTCTTCTCCTCCG 58.384 50.000 0.00 0.00 0.00 4.63
1078 1417 0.537188 GGAATCTTGGTCGGCTGAGA 59.463 55.000 0.00 0.00 0.00 3.27
1079 1418 1.472376 GGAATCTTGGTCGGCTGAGAG 60.472 57.143 0.00 0.00 0.00 3.20
1080 1419 1.478510 GAATCTTGGTCGGCTGAGAGA 59.521 52.381 0.00 0.13 0.00 3.10
1103 1442 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1106 1445 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
1107 1446 2.363680 AGAGAGAGAGAGAGAGAGAGCG 59.636 54.545 0.00 0.00 0.00 5.03
1108 1447 2.362397 GAGAGAGAGAGAGAGAGAGCGA 59.638 54.545 0.00 0.00 0.00 4.93
1109 1448 2.363680 AGAGAGAGAGAGAGAGAGCGAG 59.636 54.545 0.00 0.00 0.00 5.03
1110 1449 1.414181 AGAGAGAGAGAGAGAGCGAGG 59.586 57.143 0.00 0.00 0.00 4.63
1114 1453 0.535102 GAGAGAGAGAGCGAGGGAGG 60.535 65.000 0.00 0.00 0.00 4.30
1263 1605 3.936203 ACCGGCGGAGAACAAGCA 61.936 61.111 35.78 0.00 0.00 3.91
1601 1964 0.393132 GGAGGAGCACAAGTAAGCCC 60.393 60.000 0.00 0.00 0.00 5.19
1602 1965 0.615850 GAGGAGCACAAGTAAGCCCT 59.384 55.000 0.00 0.00 35.19 5.19
1603 1966 0.326264 AGGAGCACAAGTAAGCCCTG 59.674 55.000 0.00 0.00 32.56 4.45
1605 1968 1.271379 GGAGCACAAGTAAGCCCTGAA 60.271 52.381 0.00 0.00 0.00 3.02
1608 1972 2.307098 AGCACAAGTAAGCCCTGAATCT 59.693 45.455 0.00 0.00 0.00 2.40
1614 1978 4.065321 AGTAAGCCCTGAATCTCGATTG 57.935 45.455 0.00 0.00 0.00 2.67
1627 1991 0.035820 TCGATTGCCTAACCCACACC 60.036 55.000 0.00 0.00 0.00 4.16
1629 1993 0.039035 GATTGCCTAACCCACACCCA 59.961 55.000 0.00 0.00 0.00 4.51
1633 1997 1.840598 CCTAACCCACACCCACACA 59.159 57.895 0.00 0.00 0.00 3.72
1634 1998 0.404040 CCTAACCCACACCCACACAT 59.596 55.000 0.00 0.00 0.00 3.21
1635 1999 1.533625 CTAACCCACACCCACACATG 58.466 55.000 0.00 0.00 0.00 3.21
1638 2002 0.109723 ACCCACACCCACACATGTAC 59.890 55.000 0.00 0.00 0.00 2.90
1639 2003 0.109532 CCCACACCCACACATGTACA 59.890 55.000 0.00 0.00 0.00 2.90
1640 2004 1.234821 CCACACCCACACATGTACAC 58.765 55.000 0.00 0.00 0.00 2.90
1641 2005 1.234821 CACACCCACACATGTACACC 58.765 55.000 0.00 0.00 0.00 4.16
1642 2006 0.840617 ACACCCACACATGTACACCA 59.159 50.000 0.00 0.00 0.00 4.17
1643 2007 1.234821 CACCCACACATGTACACCAC 58.765 55.000 0.00 0.00 0.00 4.16
1645 2009 1.234821 CCCACACATGTACACCACAC 58.765 55.000 0.00 0.00 40.86 3.82
1647 2011 1.872952 CCACACATGTACACCACACAG 59.127 52.381 0.00 0.00 40.86 3.66
1648 2012 1.264020 CACACATGTACACCACACAGC 59.736 52.381 0.00 0.00 40.86 4.40
1651 2015 1.142870 ACATGTACACCACACAGCCTT 59.857 47.619 0.00 0.00 40.86 4.35
1652 2016 1.536766 CATGTACACCACACAGCCTTG 59.463 52.381 0.00 0.00 40.86 3.61
1663 2027 2.037772 ACACAGCCTTGAATCTCGTTCT 59.962 45.455 0.00 0.00 37.72 3.01
1666 2030 3.070018 CAGCCTTGAATCTCGTTCTGTT 58.930 45.455 0.00 0.00 37.72 3.16
1668 2032 3.067106 GCCTTGAATCTCGTTCTGTTCA 58.933 45.455 0.00 0.00 37.72 3.18
1708 2107 1.810030 CCTGAAGAAGTACGGGCGC 60.810 63.158 0.00 0.00 0.00 6.53
1897 2302 4.280019 AACACCAACCCCTCGCCC 62.280 66.667 0.00 0.00 0.00 6.13
2011 2416 3.443045 CACTTCATGCCGGCCCAC 61.443 66.667 26.77 0.00 0.00 4.61
2067 2472 2.202623 CTACCACGGCGACTCTGC 60.203 66.667 16.62 0.00 0.00 4.26
2076 2481 1.141449 GCGACTCTGCTCTGATGCT 59.859 57.895 0.00 0.00 0.00 3.79
2081 2486 1.222300 CTCTGCTCTGATGCTGATGC 58.778 55.000 8.33 0.00 39.50 3.91
2117 2522 1.374758 CAGCCTCTCGGTTGACCAC 60.375 63.158 0.51 0.00 43.57 4.16
2118 2523 1.534235 AGCCTCTCGGTTGACCACT 60.534 57.895 0.51 0.00 35.14 4.00
2134 2540 1.073897 ACTGTTCCTTGGAGCAGCC 59.926 57.895 26.18 0.00 36.98 4.85
2194 2605 1.153939 CGTGCACGAGGAAGGAGAG 60.154 63.158 34.93 0.00 43.02 3.20
2227 2645 2.743928 CGTGCTCTTGGTCCCAGC 60.744 66.667 0.00 0.00 0.00 4.85
2228 2646 2.360475 GTGCTCTTGGTCCCAGCC 60.360 66.667 2.86 0.00 0.00 4.85
2229 2647 2.853542 TGCTCTTGGTCCCAGCCA 60.854 61.111 2.86 0.00 36.62 4.75
2230 2648 2.045536 GCTCTTGGTCCCAGCCAG 60.046 66.667 0.00 0.00 40.01 4.85
2231 2649 2.045536 CTCTTGGTCCCAGCCAGC 60.046 66.667 0.00 0.00 40.01 4.85
2232 2650 3.635268 CTCTTGGTCCCAGCCAGCC 62.635 68.421 0.00 0.00 40.01 4.85
2233 2651 3.970410 CTTGGTCCCAGCCAGCCA 61.970 66.667 0.00 0.00 40.01 4.75
2234 2652 3.933048 CTTGGTCCCAGCCAGCCAG 62.933 68.421 0.00 0.00 40.01 4.85
2239 2657 4.798344 CCCAGCCAGCCAGCAGAG 62.798 72.222 0.00 0.00 34.23 3.35
2248 2666 0.469070 AGCCAGCAGAGATCATCCAC 59.531 55.000 0.00 0.00 0.00 4.02
2321 2762 1.561542 AGGATGGAGACGGCATTTCTT 59.438 47.619 0.00 0.00 0.00 2.52
2322 2763 1.943340 GGATGGAGACGGCATTTCTTC 59.057 52.381 0.00 0.00 0.00 2.87
2323 2764 1.943340 GATGGAGACGGCATTTCTTCC 59.057 52.381 0.00 0.00 0.00 3.46
2336 2777 3.431725 CTTCCGCGTTTGGCCTCC 61.432 66.667 3.32 0.00 38.94 4.30
2445 2931 1.460504 CAGGAGTACTGTAGTGCCGA 58.539 55.000 0.00 0.00 42.42 5.54
2446 2932 1.402259 CAGGAGTACTGTAGTGCCGAG 59.598 57.143 0.00 0.00 42.42 4.63
2452 2968 4.304939 AGTACTGTAGTGCCGAGTTTTTC 58.695 43.478 0.00 0.00 0.00 2.29
2454 2970 3.805207 ACTGTAGTGCCGAGTTTTTCTT 58.195 40.909 0.00 0.00 0.00 2.52
2489 3005 7.448748 ACTGTACTTTTGATGTATTTGGTCC 57.551 36.000 0.00 0.00 0.00 4.46
2491 3007 5.998981 TGTACTTTTGATGTATTTGGTCCGT 59.001 36.000 0.00 0.00 0.00 4.69
2509 3026 3.559655 TCCGTTATTAGTGTCATGCATGC 59.440 43.478 22.25 11.82 0.00 4.06
2510 3027 3.312146 CCGTTATTAGTGTCATGCATGCA 59.688 43.478 25.04 25.04 0.00 3.96
2514 3031 6.562825 CGTTATTAGTGTCATGCATGCAGTAG 60.563 42.308 26.69 17.67 0.00 2.57
2515 3032 4.470334 TTAGTGTCATGCATGCAGTAGA 57.530 40.909 26.69 19.64 0.00 2.59
2516 3033 2.902523 AGTGTCATGCATGCAGTAGAG 58.097 47.619 26.69 12.74 0.00 2.43
2517 3034 2.235650 AGTGTCATGCATGCAGTAGAGT 59.764 45.455 26.69 14.22 0.00 3.24
2518 3035 3.448660 AGTGTCATGCATGCAGTAGAGTA 59.551 43.478 26.69 12.14 0.00 2.59
2519 3036 3.553511 GTGTCATGCATGCAGTAGAGTAC 59.446 47.826 26.69 18.52 0.00 2.73
2537 3054 2.710096 ACGTATTTGGGTAGCAGCAT 57.290 45.000 0.00 0.00 0.00 3.79
2538 3055 2.999331 ACGTATTTGGGTAGCAGCATT 58.001 42.857 0.00 0.00 0.00 3.56
2539 3056 3.352648 ACGTATTTGGGTAGCAGCATTT 58.647 40.909 0.00 0.00 0.00 2.32
2573 3116 4.023279 TGTTGATCTTTCGATTTGGGTGTG 60.023 41.667 0.00 0.00 0.00 3.82
2611 3162 4.081198 CCTCTCATTGACCCCTGCTATATC 60.081 50.000 0.00 0.00 0.00 1.63
2618 5421 7.665559 TCATTGACCCCTGCTATATCAATTAAC 59.334 37.037 0.00 0.00 37.80 2.01
2640 5443 2.602257 TGATGAACTCGATGCCGATT 57.398 45.000 0.00 0.00 44.62 3.34
2649 5452 6.311200 TGAACTCGATGCCGATTATGATTATG 59.689 38.462 0.00 0.00 44.62 1.90
2654 5457 8.352752 TCGATGCCGATTATGATTATGATTAC 57.647 34.615 0.00 0.00 40.30 1.89
2655 5458 7.438160 TCGATGCCGATTATGATTATGATTACC 59.562 37.037 0.00 0.00 40.30 2.85
2672 5475 0.738389 ACCGTGGTTTTCTTGTGCTG 59.262 50.000 0.00 0.00 0.00 4.41
2675 5478 2.450160 CGTGGTTTTCTTGTGCTGTTC 58.550 47.619 0.00 0.00 0.00 3.18
2722 5525 3.502920 CTGAGGCGGATCAATATCGTAC 58.497 50.000 0.00 0.00 32.44 3.67
2723 5526 3.154710 TGAGGCGGATCAATATCGTACT 58.845 45.455 0.00 0.00 32.44 2.73
2725 5528 4.155462 TGAGGCGGATCAATATCGTACTAC 59.845 45.833 0.00 0.00 32.44 2.73
2726 5529 3.126514 AGGCGGATCAATATCGTACTACG 59.873 47.826 1.93 1.93 44.19 3.51
2752 5560 4.133078 CTCCATGTTTATTGGCTCCTCTC 58.867 47.826 0.00 0.00 34.06 3.20
2770 5578 2.162681 CTCCGGCTGGAAATTTCAAGT 58.837 47.619 21.19 0.00 45.87 3.16
2772 5580 2.295909 TCCGGCTGGAAATTTCAAGTTG 59.704 45.455 21.19 14.35 42.85 3.16
2830 5657 7.763985 ACAAAATGGGAGTTTGTTTAAGACTTG 59.236 33.333 0.00 0.00 44.73 3.16
2861 5694 1.004595 GATCGGGACTAAACAACGCC 58.995 55.000 0.00 0.00 0.00 5.68
2890 5733 1.740718 GCCCTCGACAAGTGATTCCTC 60.741 57.143 0.00 0.00 0.00 3.71
2939 5782 2.622011 TTGCCGCCGGTTTAGCTTG 61.622 57.895 4.45 0.00 0.00 4.01
3012 5883 1.456705 GTGAGCCACCCAACCCAAA 60.457 57.895 0.00 0.00 0.00 3.28
3014 5885 1.908299 GAGCCACCCAACCCAAAGG 60.908 63.158 0.00 0.00 40.04 3.11
3025 5896 4.766632 CCAAAGGGGGCCAGGAGC 62.767 72.222 4.39 0.00 42.60 4.70
3026 5897 3.983420 CAAAGGGGGCCAGGAGCA 61.983 66.667 4.39 0.00 46.50 4.26
3027 5898 3.665971 AAAGGGGGCCAGGAGCAG 61.666 66.667 4.39 0.00 46.50 4.24
3035 5906 4.798344 CCAGGAGCAGCAGCAGGG 62.798 72.222 3.17 0.00 45.49 4.45
3073 5954 3.827898 CTCGTCCTCCTCCGTGCC 61.828 72.222 0.00 0.00 0.00 5.01
3111 5992 0.806102 ACCGATCATCGCAAGGAACG 60.806 55.000 0.00 0.00 38.82 3.95
3162 6043 2.574322 CATTTCGTTTTCGCACAGGAG 58.426 47.619 0.00 0.00 43.73 3.69
3231 6112 2.438434 CCCTTCCGGCGCTTCATT 60.438 61.111 7.64 0.00 0.00 2.57
3232 6113 2.046285 CCCTTCCGGCGCTTCATTT 61.046 57.895 7.64 0.00 0.00 2.32
3233 6114 1.429423 CCTTCCGGCGCTTCATTTC 59.571 57.895 7.64 0.00 0.00 2.17
3234 6115 1.305219 CCTTCCGGCGCTTCATTTCA 61.305 55.000 7.64 0.00 0.00 2.69
3257 6138 4.193334 CGCGGCATCTCCTCGTCA 62.193 66.667 0.00 0.00 38.21 4.35
3292 6185 1.734465 GAGCAAGAATGTTCTCACCCG 59.266 52.381 0.00 0.00 36.28 5.28
3327 6220 6.700520 TCCTGTCTACGTTTCTTCTTCTTTTC 59.299 38.462 0.00 0.00 0.00 2.29
3344 6237 0.733566 TTCCGCGGAATGTGTACGTC 60.734 55.000 35.81 0.00 0.00 4.34
3362 6255 2.164338 GTCTCTTCTTCTCCGTGGAGT 58.836 52.381 15.28 0.00 42.49 3.85
3364 6257 3.375922 GTCTCTTCTTCTCCGTGGAGTAG 59.624 52.174 15.28 14.84 42.49 2.57
3377 6270 1.812922 GAGTAGGAGTCGGCGTCGA 60.813 63.158 8.66 8.66 43.86 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.129532 GGATCATGATTTGAATTCTAAGGAACT 57.870 33.333 10.14 0.00 38.15 3.01
6 7 9.129532 AGGATCATGATTTGAATTCTAAGGAAC 57.870 33.333 10.14 2.22 38.03 3.62
7 8 9.705103 AAGGATCATGATTTGAATTCTAAGGAA 57.295 29.630 10.14 0.00 38.03 3.36
8 9 9.128404 CAAGGATCATGATTTGAATTCTAAGGA 57.872 33.333 10.14 3.37 38.03 3.36
9 10 7.866393 GCAAGGATCATGATTTGAATTCTAAGG 59.134 37.037 19.73 0.00 38.03 2.69
10 11 8.410912 TGCAAGGATCATGATTTGAATTCTAAG 58.589 33.333 19.73 0.00 38.03 2.18
11 12 8.296211 TGCAAGGATCATGATTTGAATTCTAA 57.704 30.769 19.73 5.86 38.03 2.10
12 13 7.885009 TGCAAGGATCATGATTTGAATTCTA 57.115 32.000 19.73 0.00 38.03 2.10
13 14 6.785337 TGCAAGGATCATGATTTGAATTCT 57.215 33.333 19.73 0.00 38.03 2.40
14 15 8.433421 AAATGCAAGGATCATGATTTGAATTC 57.567 30.769 19.88 0.00 38.03 2.17
17 18 9.893634 AAATAAATGCAAGGATCATGATTTGAA 57.106 25.926 19.73 12.34 38.03 2.69
18 19 9.893634 AAAATAAATGCAAGGATCATGATTTGA 57.106 25.926 19.73 8.64 39.12 2.69
44 45 9.627395 TCGCCGAAAATTCTGAAATAAATTTAA 57.373 25.926 1.21 0.00 34.78 1.52
45 46 9.796120 ATCGCCGAAAATTCTGAAATAAATTTA 57.204 25.926 0.00 0.00 34.78 1.40
46 47 8.594687 CATCGCCGAAAATTCTGAAATAAATTT 58.405 29.630 0.00 0.00 36.81 1.82
47 48 7.254084 GCATCGCCGAAAATTCTGAAATAAATT 60.254 33.333 0.00 0.00 0.00 1.82
48 49 6.198966 GCATCGCCGAAAATTCTGAAATAAAT 59.801 34.615 0.00 0.00 0.00 1.40
49 50 5.514914 GCATCGCCGAAAATTCTGAAATAAA 59.485 36.000 0.00 0.00 0.00 1.40
50 51 5.034152 GCATCGCCGAAAATTCTGAAATAA 58.966 37.500 0.00 0.00 0.00 1.40
51 52 4.597079 GCATCGCCGAAAATTCTGAAATA 58.403 39.130 0.00 0.00 0.00 1.40
52 53 3.438360 GCATCGCCGAAAATTCTGAAAT 58.562 40.909 0.00 0.00 0.00 2.17
53 54 2.727607 CGCATCGCCGAAAATTCTGAAA 60.728 45.455 0.00 0.00 0.00 2.69
54 55 1.202020 CGCATCGCCGAAAATTCTGAA 60.202 47.619 0.00 0.00 0.00 3.02
55 56 0.373370 CGCATCGCCGAAAATTCTGA 59.627 50.000 0.00 0.00 0.00 3.27
56 57 2.845600 CGCATCGCCGAAAATTCTG 58.154 52.632 0.00 0.00 0.00 3.02
68 69 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
69 70 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
70 71 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
71 72 1.913951 ATCCTCCCACTGAATGCGCA 61.914 55.000 14.96 14.96 0.00 6.09
72 73 0.106708 TATCCTCCCACTGAATGCGC 59.893 55.000 0.00 0.00 0.00 6.09
73 74 1.869754 CGTATCCTCCCACTGAATGCG 60.870 57.143 0.00 0.00 0.00 4.73
74 75 1.139058 ACGTATCCTCCCACTGAATGC 59.861 52.381 0.00 0.00 0.00 3.56
75 76 3.543680 AACGTATCCTCCCACTGAATG 57.456 47.619 0.00 0.00 0.00 2.67
76 77 3.517901 TGAAACGTATCCTCCCACTGAAT 59.482 43.478 0.00 0.00 0.00 2.57
77 78 2.901192 TGAAACGTATCCTCCCACTGAA 59.099 45.455 0.00 0.00 0.00 3.02
78 79 2.531771 TGAAACGTATCCTCCCACTGA 58.468 47.619 0.00 0.00 0.00 3.41
79 80 3.328382 TTGAAACGTATCCTCCCACTG 57.672 47.619 0.00 0.00 0.00 3.66
80 81 3.430374 CGATTGAAACGTATCCTCCCACT 60.430 47.826 0.00 0.00 0.00 4.00
81 82 2.864343 CGATTGAAACGTATCCTCCCAC 59.136 50.000 0.00 0.00 0.00 4.61
82 83 2.761767 TCGATTGAAACGTATCCTCCCA 59.238 45.455 0.00 0.00 0.00 4.37
83 84 3.121544 GTCGATTGAAACGTATCCTCCC 58.878 50.000 0.00 0.00 0.00 4.30
84 85 4.043037 AGTCGATTGAAACGTATCCTCC 57.957 45.455 0.00 0.00 0.00 4.30
85 86 5.681982 CAGTAGTCGATTGAAACGTATCCTC 59.318 44.000 0.00 0.00 0.00 3.71
86 87 5.125097 ACAGTAGTCGATTGAAACGTATCCT 59.875 40.000 0.00 0.00 0.00 3.24
87 88 5.229469 CACAGTAGTCGATTGAAACGTATCC 59.771 44.000 0.00 0.00 0.00 2.59
88 89 5.798934 ACACAGTAGTCGATTGAAACGTATC 59.201 40.000 0.00 0.00 0.00 2.24
89 90 5.706916 ACACAGTAGTCGATTGAAACGTAT 58.293 37.500 0.00 0.00 0.00 3.06
90 91 5.112220 ACACAGTAGTCGATTGAAACGTA 57.888 39.130 0.00 0.00 0.00 3.57
91 92 3.973657 ACACAGTAGTCGATTGAAACGT 58.026 40.909 0.00 0.00 0.00 3.99
92 93 4.028757 CGTACACAGTAGTCGATTGAAACG 59.971 45.833 0.00 0.00 0.00 3.60
93 94 4.913924 ACGTACACAGTAGTCGATTGAAAC 59.086 41.667 0.00 0.00 0.00 2.78
94 95 5.112220 ACGTACACAGTAGTCGATTGAAA 57.888 39.130 0.00 0.00 0.00 2.69
95 96 4.754372 ACGTACACAGTAGTCGATTGAA 57.246 40.909 0.00 0.00 0.00 2.69
96 97 4.754372 AACGTACACAGTAGTCGATTGA 57.246 40.909 0.00 0.00 0.00 2.57
97 98 4.913345 TGAAACGTACACAGTAGTCGATTG 59.087 41.667 0.00 0.00 0.00 2.67
98 99 5.112220 TGAAACGTACACAGTAGTCGATT 57.888 39.130 0.00 0.00 0.00 3.34
99 100 4.754372 TGAAACGTACACAGTAGTCGAT 57.246 40.909 0.00 0.00 0.00 3.59
100 101 4.550577 TTGAAACGTACACAGTAGTCGA 57.449 40.909 0.00 0.00 0.00 4.20
101 102 4.736793 ACTTTGAAACGTACACAGTAGTCG 59.263 41.667 11.08 0.00 0.00 4.18
102 103 5.745294 TCACTTTGAAACGTACACAGTAGTC 59.255 40.000 11.99 0.00 29.08 2.59
103 104 5.653507 TCACTTTGAAACGTACACAGTAGT 58.346 37.500 11.99 7.11 29.08 2.73
104 105 6.764877 ATCACTTTGAAACGTACACAGTAG 57.235 37.500 11.99 8.48 29.08 2.57
105 106 7.148705 GCATATCACTTTGAAACGTACACAGTA 60.149 37.037 11.99 1.71 29.08 2.74
106 107 6.347402 GCATATCACTTTGAAACGTACACAGT 60.347 38.462 8.12 8.12 0.00 3.55
107 108 6.015504 GCATATCACTTTGAAACGTACACAG 58.984 40.000 0.00 0.00 0.00 3.66
108 109 5.699001 AGCATATCACTTTGAAACGTACACA 59.301 36.000 0.00 0.00 0.00 3.72
109 110 6.015504 CAGCATATCACTTTGAAACGTACAC 58.984 40.000 0.00 0.00 0.00 2.90
110 111 5.121611 CCAGCATATCACTTTGAAACGTACA 59.878 40.000 0.00 0.00 0.00 2.90
111 112 5.560148 CCAGCATATCACTTTGAAACGTAC 58.440 41.667 0.00 0.00 0.00 3.67
112 113 4.094294 GCCAGCATATCACTTTGAAACGTA 59.906 41.667 0.00 0.00 0.00 3.57
113 114 3.119849 GCCAGCATATCACTTTGAAACGT 60.120 43.478 0.00 0.00 0.00 3.99
114 115 3.127548 AGCCAGCATATCACTTTGAAACG 59.872 43.478 0.00 0.00 0.00 3.60
115 116 4.156556 TGAGCCAGCATATCACTTTGAAAC 59.843 41.667 0.00 0.00 0.00 2.78
116 117 4.334552 TGAGCCAGCATATCACTTTGAAA 58.665 39.130 0.00 0.00 0.00 2.69
117 118 3.943381 CTGAGCCAGCATATCACTTTGAA 59.057 43.478 0.00 0.00 0.00 2.69
118 119 3.054875 ACTGAGCCAGCATATCACTTTGA 60.055 43.478 2.50 0.00 34.37 2.69
119 120 3.276857 ACTGAGCCAGCATATCACTTTG 58.723 45.455 2.50 0.00 34.37 2.77
120 121 3.199508 AGACTGAGCCAGCATATCACTTT 59.800 43.478 2.50 0.00 34.37 2.66
121 122 2.770802 AGACTGAGCCAGCATATCACTT 59.229 45.455 2.50 0.00 34.37 3.16
122 123 2.396608 AGACTGAGCCAGCATATCACT 58.603 47.619 2.50 0.00 34.37 3.41
123 124 2.906691 AGACTGAGCCAGCATATCAC 57.093 50.000 2.50 0.00 34.37 3.06
124 125 3.739209 CGAAAGACTGAGCCAGCATATCA 60.739 47.826 2.50 0.00 34.37 2.15
125 126 2.799412 CGAAAGACTGAGCCAGCATATC 59.201 50.000 2.50 0.00 34.37 1.63
126 127 2.432146 TCGAAAGACTGAGCCAGCATAT 59.568 45.455 2.50 0.00 34.37 1.78
127 128 1.824852 TCGAAAGACTGAGCCAGCATA 59.175 47.619 2.50 0.00 34.37 3.14
128 129 0.610174 TCGAAAGACTGAGCCAGCAT 59.390 50.000 2.50 0.00 34.37 3.79
129 130 0.392706 TTCGAAAGACTGAGCCAGCA 59.607 50.000 0.00 0.00 41.84 4.41
130 131 1.396301 CATTCGAAAGACTGAGCCAGC 59.604 52.381 0.00 0.00 42.73 4.85
131 132 1.396301 GCATTCGAAAGACTGAGCCAG 59.604 52.381 0.00 1.16 42.73 4.85
132 133 1.442769 GCATTCGAAAGACTGAGCCA 58.557 50.000 0.00 0.00 42.73 4.75
133 134 0.371645 CGCATTCGAAAGACTGAGCC 59.628 55.000 0.00 0.00 42.73 4.70
134 135 3.865914 CGCATTCGAAAGACTGAGC 57.134 52.632 0.00 0.00 42.73 4.26
135 136 1.322936 GAGCGCATTCGAAAGACTGAG 59.677 52.381 11.47 0.00 42.73 3.35
136 137 1.350193 GAGCGCATTCGAAAGACTGA 58.650 50.000 11.47 0.00 42.73 3.41
137 138 0.024238 CGAGCGCATTCGAAAGACTG 59.976 55.000 13.23 0.00 43.03 3.51
138 139 0.388649 ACGAGCGCATTCGAAAGACT 60.389 50.000 23.64 0.00 43.03 3.24
139 140 1.265568 TACGAGCGCATTCGAAAGAC 58.734 50.000 23.64 0.00 43.03 3.01
140 141 2.203800 ATACGAGCGCATTCGAAAGA 57.796 45.000 23.64 7.82 43.03 2.52
141 142 3.297472 TCTATACGAGCGCATTCGAAAG 58.703 45.455 23.64 16.27 43.03 2.62
142 143 3.343380 TCTATACGAGCGCATTCGAAA 57.657 42.857 23.64 12.37 43.03 3.46
143 144 3.554259 ATCTATACGAGCGCATTCGAA 57.446 42.857 23.64 0.00 43.03 3.71
144 145 3.063588 CCTATCTATACGAGCGCATTCGA 59.936 47.826 23.64 9.30 43.03 3.71
145 146 3.355270 CCTATCTATACGAGCGCATTCG 58.645 50.000 16.44 16.44 45.70 3.34
146 147 3.128938 ACCCTATCTATACGAGCGCATTC 59.871 47.826 11.47 0.00 0.00 2.67
147 148 3.090037 ACCCTATCTATACGAGCGCATT 58.910 45.455 11.47 0.00 0.00 3.56
148 149 2.423892 CACCCTATCTATACGAGCGCAT 59.576 50.000 11.47 0.00 0.00 4.73
149 150 1.810755 CACCCTATCTATACGAGCGCA 59.189 52.381 11.47 0.00 0.00 6.09
150 151 1.811359 ACACCCTATCTATACGAGCGC 59.189 52.381 0.00 0.00 0.00 5.92
151 152 2.414293 GCACACCCTATCTATACGAGCG 60.414 54.545 0.00 0.00 0.00 5.03
152 153 2.414293 CGCACACCCTATCTATACGAGC 60.414 54.545 0.00 0.00 0.00 5.03
153 154 2.812591 ACGCACACCCTATCTATACGAG 59.187 50.000 0.00 0.00 0.00 4.18
154 155 2.551032 CACGCACACCCTATCTATACGA 59.449 50.000 0.00 0.00 0.00 3.43
155 156 2.292569 ACACGCACACCCTATCTATACG 59.707 50.000 0.00 0.00 0.00 3.06
156 157 3.067742 ACACACGCACACCCTATCTATAC 59.932 47.826 0.00 0.00 0.00 1.47
157 158 3.067601 CACACACGCACACCCTATCTATA 59.932 47.826 0.00 0.00 0.00 1.31
158 159 2.108168 ACACACGCACACCCTATCTAT 58.892 47.619 0.00 0.00 0.00 1.98
159 160 1.203758 CACACACGCACACCCTATCTA 59.796 52.381 0.00 0.00 0.00 1.98
160 161 0.037326 CACACACGCACACCCTATCT 60.037 55.000 0.00 0.00 0.00 1.98
161 162 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
162 163 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
163 164 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
166 167 2.037913 TAAACGCACACACGCACACC 62.038 55.000 0.00 0.00 36.19 4.16
167 168 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
168 169 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
169 170 1.201877 CCTATAAACGCACACACGCAC 60.202 52.381 0.00 0.00 36.19 5.34
170 171 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
171 172 0.372334 CCCTATAAACGCACACACGC 59.628 55.000 0.00 0.00 36.19 5.34
172 173 1.999048 TCCCTATAAACGCACACACG 58.001 50.000 0.00 0.00 39.50 4.49
173 174 3.527533 TCATCCCTATAAACGCACACAC 58.472 45.455 0.00 0.00 0.00 3.82
174 175 3.196901 ACTCATCCCTATAAACGCACACA 59.803 43.478 0.00 0.00 0.00 3.72
175 176 3.793559 ACTCATCCCTATAAACGCACAC 58.206 45.455 0.00 0.00 0.00 3.82
176 177 5.801531 ATACTCATCCCTATAAACGCACA 57.198 39.130 0.00 0.00 0.00 4.57
177 178 7.642978 CGTATATACTCATCCCTATAAACGCAC 59.357 40.741 11.05 0.00 0.00 5.34
178 179 7.680350 GCGTATATACTCATCCCTATAAACGCA 60.680 40.741 11.05 0.00 37.72 5.24
179 180 6.636044 GCGTATATACTCATCCCTATAAACGC 59.364 42.308 11.05 0.00 0.00 4.84
180 181 6.849811 CGCGTATATACTCATCCCTATAAACG 59.150 42.308 11.05 0.00 0.00 3.60
181 182 7.642978 CACGCGTATATACTCATCCCTATAAAC 59.357 40.741 13.44 0.00 0.00 2.01
182 183 7.337689 ACACGCGTATATACTCATCCCTATAAA 59.662 37.037 13.44 0.00 0.00 1.40
183 184 6.825213 ACACGCGTATATACTCATCCCTATAA 59.175 38.462 13.44 0.00 0.00 0.98
184 185 6.351711 ACACGCGTATATACTCATCCCTATA 58.648 40.000 13.44 0.00 0.00 1.31
185 186 5.191426 ACACGCGTATATACTCATCCCTAT 58.809 41.667 13.44 0.00 0.00 2.57
186 187 4.582869 ACACGCGTATATACTCATCCCTA 58.417 43.478 13.44 0.00 0.00 3.53
187 188 3.418995 ACACGCGTATATACTCATCCCT 58.581 45.455 13.44 0.00 0.00 4.20
188 189 3.844577 ACACGCGTATATACTCATCCC 57.155 47.619 13.44 0.00 0.00 3.85
189 190 5.287170 TGTACACGCGTATATACTCATCC 57.713 43.478 13.44 0.00 0.00 3.51
190 191 6.540205 TCATGTACACGCGTATATACTCATC 58.460 40.000 13.44 0.00 29.19 2.92
191 192 6.148976 ACTCATGTACACGCGTATATACTCAT 59.851 38.462 13.44 1.41 29.19 2.90
192 193 5.467735 ACTCATGTACACGCGTATATACTCA 59.532 40.000 13.44 0.00 29.19 3.41
193 194 5.789021 CACTCATGTACACGCGTATATACTC 59.211 44.000 13.44 2.06 29.19 2.59
194 195 5.686834 CACTCATGTACACGCGTATATACT 58.313 41.667 13.44 2.97 29.19 2.12
195 196 4.320164 GCACTCATGTACACGCGTATATAC 59.680 45.833 13.44 15.45 29.19 1.47
196 197 4.214758 AGCACTCATGTACACGCGTATATA 59.785 41.667 13.44 3.10 29.19 0.86
197 198 3.004419 AGCACTCATGTACACGCGTATAT 59.996 43.478 13.44 2.74 30.18 0.86
198 199 2.356695 AGCACTCATGTACACGCGTATA 59.643 45.455 13.44 0.27 0.00 1.47
199 200 1.134367 AGCACTCATGTACACGCGTAT 59.866 47.619 13.44 1.77 0.00 3.06
200 201 0.524414 AGCACTCATGTACACGCGTA 59.476 50.000 13.44 0.00 0.00 4.42
201 202 0.319555 AAGCACTCATGTACACGCGT 60.320 50.000 5.58 5.58 0.00 6.01
202 203 0.093535 CAAGCACTCATGTACACGCG 59.906 55.000 3.53 3.53 0.00 6.01
203 204 0.179215 GCAAGCACTCATGTACACGC 60.179 55.000 0.00 0.00 0.00 5.34
204 205 0.093535 CGCAAGCACTCATGTACACG 59.906 55.000 0.00 0.00 0.00 4.49
205 206 1.126846 GACGCAAGCACTCATGTACAC 59.873 52.381 0.00 0.00 45.62 2.90
206 207 1.000843 AGACGCAAGCACTCATGTACA 59.999 47.619 0.00 0.00 45.62 2.90
207 208 1.391485 CAGACGCAAGCACTCATGTAC 59.609 52.381 0.00 0.00 45.62 2.90
208 209 1.000843 ACAGACGCAAGCACTCATGTA 59.999 47.619 0.00 0.00 45.62 2.29
209 210 0.250038 ACAGACGCAAGCACTCATGT 60.250 50.000 0.00 0.00 45.62 3.21
210 211 1.391485 GTACAGACGCAAGCACTCATG 59.609 52.381 0.00 0.00 45.62 3.07
211 212 1.673033 GGTACAGACGCAAGCACTCAT 60.673 52.381 0.00 0.00 45.62 2.90
212 213 0.319555 GGTACAGACGCAAGCACTCA 60.320 55.000 0.00 0.00 45.62 3.41
213 214 1.344942 CGGTACAGACGCAAGCACTC 61.345 60.000 0.00 0.00 45.62 3.51
214 215 1.372997 CGGTACAGACGCAAGCACT 60.373 57.895 0.00 0.00 45.62 4.40
215 216 1.663702 ACGGTACAGACGCAAGCAC 60.664 57.895 0.00 0.00 45.62 4.40
216 217 1.663388 CACGGTACAGACGCAAGCA 60.663 57.895 0.00 0.00 45.62 3.91
217 218 1.219522 AACACGGTACAGACGCAAGC 61.220 55.000 0.00 0.00 45.62 4.01
219 220 2.505628 TTAACACGGTACAGACGCAA 57.494 45.000 0.00 0.00 34.00 4.85
220 221 2.505628 TTTAACACGGTACAGACGCA 57.494 45.000 0.00 0.00 34.00 5.24
221 222 3.857923 TTTTTAACACGGTACAGACGC 57.142 42.857 0.00 0.00 34.00 5.19
240 241 7.860872 GGTGAGAAACTCATTACGTTGATTTTT 59.139 33.333 0.00 0.00 42.73 1.94
241 242 7.360361 GGTGAGAAACTCATTACGTTGATTTT 58.640 34.615 5.54 5.54 42.73 1.82
242 243 6.072673 GGGTGAGAAACTCATTACGTTGATTT 60.073 38.462 0.00 0.00 42.73 2.17
243 244 5.411669 GGGTGAGAAACTCATTACGTTGATT 59.588 40.000 0.00 0.00 42.73 2.57
244 245 4.935808 GGGTGAGAAACTCATTACGTTGAT 59.064 41.667 0.00 0.00 42.73 2.57
245 246 4.202274 TGGGTGAGAAACTCATTACGTTGA 60.202 41.667 0.00 0.00 42.73 3.18
246 247 4.062293 TGGGTGAGAAACTCATTACGTTG 58.938 43.478 0.00 0.00 42.73 4.10
247 248 4.062991 GTGGGTGAGAAACTCATTACGTT 58.937 43.478 0.00 0.00 42.70 3.99
248 249 3.660865 GTGGGTGAGAAACTCATTACGT 58.339 45.455 4.79 0.00 42.70 3.57
249 250 2.666508 CGTGGGTGAGAAACTCATTACG 59.333 50.000 14.94 14.94 42.70 3.18
250 251 3.000727 CCGTGGGTGAGAAACTCATTAC 58.999 50.000 4.79 4.49 42.70 1.89
251 252 2.635915 ACCGTGGGTGAGAAACTCATTA 59.364 45.455 4.79 0.00 42.70 1.90
252 253 1.420138 ACCGTGGGTGAGAAACTCATT 59.580 47.619 4.79 0.00 42.70 2.57
253 254 1.002087 GACCGTGGGTGAGAAACTCAT 59.998 52.381 4.79 0.00 42.70 2.90
254 255 0.391597 GACCGTGGGTGAGAAACTCA 59.608 55.000 0.00 0.00 36.72 3.41
255 256 0.320508 GGACCGTGGGTGAGAAACTC 60.321 60.000 0.00 0.00 35.25 3.01
256 257 1.052124 TGGACCGTGGGTGAGAAACT 61.052 55.000 0.00 0.00 35.25 2.66
257 258 0.883370 GTGGACCGTGGGTGAGAAAC 60.883 60.000 0.00 0.00 35.25 2.78
258 259 1.338890 TGTGGACCGTGGGTGAGAAA 61.339 55.000 0.00 0.00 35.25 2.52
259 260 1.125093 ATGTGGACCGTGGGTGAGAA 61.125 55.000 0.00 0.00 35.25 2.87
260 261 1.535444 ATGTGGACCGTGGGTGAGA 60.535 57.895 0.00 0.00 35.25 3.27
261 262 1.375908 CATGTGGACCGTGGGTGAG 60.376 63.158 0.00 0.00 35.25 3.51
262 263 1.411651 TTCATGTGGACCGTGGGTGA 61.412 55.000 0.00 0.00 35.25 4.02
263 264 0.322456 ATTCATGTGGACCGTGGGTG 60.322 55.000 0.00 0.00 35.25 4.61
264 265 1.065709 GTATTCATGTGGACCGTGGGT 60.066 52.381 0.00 0.00 39.44 4.51
265 266 1.663695 GTATTCATGTGGACCGTGGG 58.336 55.000 0.00 0.00 0.00 4.61
266 267 1.065782 TGGTATTCATGTGGACCGTGG 60.066 52.381 0.00 0.00 34.49 4.94
267 268 2.394930 TGGTATTCATGTGGACCGTG 57.605 50.000 0.00 0.00 34.49 4.94
268 269 2.039216 TGTTGGTATTCATGTGGACCGT 59.961 45.455 0.00 0.00 34.49 4.83
269 270 2.677836 CTGTTGGTATTCATGTGGACCG 59.322 50.000 0.00 0.00 34.49 4.79
270 271 3.016736 CCTGTTGGTATTCATGTGGACC 58.983 50.000 0.00 0.00 0.00 4.46
271 272 3.016736 CCCTGTTGGTATTCATGTGGAC 58.983 50.000 0.00 0.00 0.00 4.02
272 273 3.364460 CCCTGTTGGTATTCATGTGGA 57.636 47.619 0.00 0.00 0.00 4.02
299 300 1.529244 GCCTTCCACTGTTGCTGGT 60.529 57.895 0.00 0.00 0.00 4.00
302 303 2.980233 GCGCCTTCCACTGTTGCT 60.980 61.111 0.00 0.00 0.00 3.91
323 324 7.358830 GTTTCATCACTCTTTTCTTCTTCCTG 58.641 38.462 0.00 0.00 0.00 3.86
326 327 7.169982 TCTCGTTTCATCACTCTTTTCTTCTTC 59.830 37.037 0.00 0.00 0.00 2.87
329 330 6.642950 TCTCTCGTTTCATCACTCTTTTCTTC 59.357 38.462 0.00 0.00 0.00 2.87
330 331 6.516718 TCTCTCGTTTCATCACTCTTTTCTT 58.483 36.000 0.00 0.00 0.00 2.52
331 332 6.090483 TCTCTCGTTTCATCACTCTTTTCT 57.910 37.500 0.00 0.00 0.00 2.52
332 333 5.347364 CCTCTCTCGTTTCATCACTCTTTTC 59.653 44.000 0.00 0.00 0.00 2.29
343 344 2.171840 CTCCCTTCCTCTCTCGTTTCA 58.828 52.381 0.00 0.00 0.00 2.69
349 350 2.038659 CACATCCTCCCTTCCTCTCTC 58.961 57.143 0.00 0.00 0.00 3.20
354 355 0.119155 TCCACACATCCTCCCTTCCT 59.881 55.000 0.00 0.00 0.00 3.36
368 369 3.283751 ACAATTCCTCGTGTTTTCCACA 58.716 40.909 0.00 0.00 44.78 4.17
378 379 2.236395 CCTCCCAGTAACAATTCCTCGT 59.764 50.000 0.00 0.00 0.00 4.18
380 381 2.844348 TCCCTCCCAGTAACAATTCCTC 59.156 50.000 0.00 0.00 0.00 3.71
382 383 2.092375 CCTCCCTCCCAGTAACAATTCC 60.092 54.545 0.00 0.00 0.00 3.01
388 389 1.281287 GTTTCCCTCCCTCCCAGTAAC 59.719 57.143 0.00 0.00 0.00 2.50
390 391 0.616679 CGTTTCCCTCCCTCCCAGTA 60.617 60.000 0.00 0.00 0.00 2.74
391 392 1.918800 CGTTTCCCTCCCTCCCAGT 60.919 63.158 0.00 0.00 0.00 4.00
392 393 2.670148 CCGTTTCCCTCCCTCCCAG 61.670 68.421 0.00 0.00 0.00 4.45
393 394 2.609610 CCGTTTCCCTCCCTCCCA 60.610 66.667 0.00 0.00 0.00 4.37
395 396 0.322277 GAAACCGTTTCCCTCCCTCC 60.322 60.000 12.28 0.00 33.56 4.30
396 397 0.691332 AGAAACCGTTTCCCTCCCTC 59.309 55.000 18.43 0.00 40.54 4.30
397 398 0.691332 GAGAAACCGTTTCCCTCCCT 59.309 55.000 18.43 1.13 40.54 4.20
398 399 0.399075 TGAGAAACCGTTTCCCTCCC 59.601 55.000 18.43 5.91 40.54 4.30
399 400 1.520494 GTGAGAAACCGTTTCCCTCC 58.480 55.000 18.43 7.96 40.54 4.30
410 411 2.570442 TTTTTGCCACGGTGAGAAAC 57.430 45.000 10.28 0.00 0.00 2.78
432 435 0.593128 GTGGCGCTCAACAAACTCAT 59.407 50.000 7.64 0.00 0.00 2.90
457 463 3.834799 GTAGGTCCACGCCCCTCG 61.835 72.222 0.00 0.00 45.38 4.63
538 560 1.637402 GACTCGTCTCGTCCTAGCG 59.363 63.158 0.00 0.00 0.00 4.26
666 960 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
667 961 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
678 972 0.550914 GAGAGAGGCAGAGAGGAGGA 59.449 60.000 0.00 0.00 0.00 3.71
679 973 0.552848 AGAGAGAGGCAGAGAGGAGG 59.447 60.000 0.00 0.00 0.00 4.30
680 974 1.683943 CAGAGAGAGGCAGAGAGGAG 58.316 60.000 0.00 0.00 0.00 3.69
681 975 0.395586 GCAGAGAGAGGCAGAGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
682 976 1.727511 CGCAGAGAGAGGCAGAGAGG 61.728 65.000 0.00 0.00 0.00 3.69
683 977 1.729276 CGCAGAGAGAGGCAGAGAG 59.271 63.158 0.00 0.00 0.00 3.20
684 978 2.413963 GCGCAGAGAGAGGCAGAGA 61.414 63.158 0.30 0.00 0.00 3.10
685 979 2.104729 GCGCAGAGAGAGGCAGAG 59.895 66.667 0.30 0.00 0.00 3.35
686 980 3.456365 GGCGCAGAGAGAGGCAGA 61.456 66.667 10.83 0.00 42.25 4.26
687 981 4.527583 GGGCGCAGAGAGAGGCAG 62.528 72.222 10.83 0.00 44.51 4.85
689 983 4.219999 GAGGGCGCAGAGAGAGGC 62.220 72.222 10.83 0.00 41.95 4.70
717 1011 3.141488 GAGCGAGCTTCGGGGAGA 61.141 66.667 0.00 0.00 40.84 3.71
742 1036 2.853914 GCTTTCTGTGTCCGCGAC 59.146 61.111 8.23 4.50 0.00 5.19
750 1044 3.121030 CGCCCCTCGCTTTCTGTG 61.121 66.667 0.00 0.00 34.21 3.66
752 1046 2.510238 CTCGCCCCTCGCTTTCTG 60.510 66.667 0.00 0.00 38.27 3.02
776 1070 1.283029 CAAAAGCCTCCTGATCTCCCA 59.717 52.381 0.00 0.00 0.00 4.37
812 1122 2.574018 GGGCCTTGGTGGAGTTTGC 61.574 63.158 0.84 0.00 38.35 3.68
825 1135 4.115199 GGCTCGGTGATTGGGCCT 62.115 66.667 4.53 0.00 39.68 5.19
846 1156 1.743995 GGGCGCGCTTAAAGAAGGA 60.744 57.895 32.29 0.00 32.84 3.36
941 1256 4.065281 GGCGGTATCGATCCGGGG 62.065 72.222 26.56 9.36 46.90 5.73
1002 1317 4.625324 CGGAGGAGAAGAGAAGAGAAGAGA 60.625 50.000 0.00 0.00 0.00 3.10
1003 1318 3.627577 CGGAGGAGAAGAGAAGAGAAGAG 59.372 52.174 0.00 0.00 0.00 2.85
1004 1319 3.616219 CGGAGGAGAAGAGAAGAGAAGA 58.384 50.000 0.00 0.00 0.00 2.87
1005 1320 2.099098 GCGGAGGAGAAGAGAAGAGAAG 59.901 54.545 0.00 0.00 0.00 2.85
1006 1321 2.096248 GCGGAGGAGAAGAGAAGAGAA 58.904 52.381 0.00 0.00 0.00 2.87
1007 1322 1.283613 AGCGGAGGAGAAGAGAAGAGA 59.716 52.381 0.00 0.00 0.00 3.10
1008 1323 1.676006 GAGCGGAGGAGAAGAGAAGAG 59.324 57.143 0.00 0.00 0.00 2.85
1009 1324 1.683629 GGAGCGGAGGAGAAGAGAAGA 60.684 57.143 0.00 0.00 0.00 2.87
1010 1325 0.744281 GGAGCGGAGGAGAAGAGAAG 59.256 60.000 0.00 0.00 0.00 2.85
1011 1326 0.333312 AGGAGCGGAGGAGAAGAGAA 59.667 55.000 0.00 0.00 0.00 2.87
1025 1340 2.359975 CAAACCCACGGGAGGAGC 60.360 66.667 9.72 0.00 38.96 4.70
1078 1417 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1079 1418 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1080 1419 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1103 1442 0.541764 ATCATCTCCCTCCCTCGCTC 60.542 60.000 0.00 0.00 0.00 5.03
1106 1445 1.617850 CTTCATCATCTCCCTCCCTCG 59.382 57.143 0.00 0.00 0.00 4.63
1107 1446 1.347378 GCTTCATCATCTCCCTCCCTC 59.653 57.143 0.00 0.00 0.00 4.30
1108 1447 1.344803 TGCTTCATCATCTCCCTCCCT 60.345 52.381 0.00 0.00 0.00 4.20
1109 1448 1.072015 CTGCTTCATCATCTCCCTCCC 59.928 57.143 0.00 0.00 0.00 4.30
1110 1449 1.072015 CCTGCTTCATCATCTCCCTCC 59.928 57.143 0.00 0.00 0.00 4.30
1114 1453 2.545532 CGACTCCTGCTTCATCATCTCC 60.546 54.545 0.00 0.00 0.00 3.71
1246 1588 3.883744 CTGCTTGTTCTCCGCCGGT 62.884 63.158 1.63 0.00 0.00 5.28
1601 1964 3.134458 GGGTTAGGCAATCGAGATTCAG 58.866 50.000 0.00 0.00 0.00 3.02
1602 1965 2.503765 TGGGTTAGGCAATCGAGATTCA 59.496 45.455 0.00 0.00 0.00 2.57
1603 1966 2.872858 GTGGGTTAGGCAATCGAGATTC 59.127 50.000 0.00 0.00 0.00 2.52
1605 1968 1.837439 TGTGGGTTAGGCAATCGAGAT 59.163 47.619 0.00 0.00 0.00 2.75
1608 1972 0.035820 GGTGTGGGTTAGGCAATCGA 60.036 55.000 0.00 0.00 0.00 3.59
1614 1978 1.602605 GTGTGGGTGTGGGTTAGGC 60.603 63.158 0.00 0.00 0.00 3.93
1627 1991 1.872952 CTGTGTGGTGTACATGTGTGG 59.127 52.381 9.11 0.00 42.24 4.17
1629 1993 1.593196 GCTGTGTGGTGTACATGTGT 58.407 50.000 9.11 0.00 42.24 3.72
1633 1997 1.419762 TCAAGGCTGTGTGGTGTACAT 59.580 47.619 0.00 0.00 42.24 2.29
1634 1998 0.833949 TCAAGGCTGTGTGGTGTACA 59.166 50.000 0.00 0.00 36.82 2.90
1635 1999 1.961793 TTCAAGGCTGTGTGGTGTAC 58.038 50.000 0.00 0.00 0.00 2.90
1638 2002 1.808945 GAGATTCAAGGCTGTGTGGTG 59.191 52.381 0.00 0.00 0.00 4.17
1639 2003 1.609061 CGAGATTCAAGGCTGTGTGGT 60.609 52.381 0.00 0.00 0.00 4.16
1640 2004 1.081892 CGAGATTCAAGGCTGTGTGG 58.918 55.000 0.00 0.00 0.00 4.17
1641 2005 1.800805 ACGAGATTCAAGGCTGTGTG 58.199 50.000 0.00 0.00 0.00 3.82
1642 2006 2.037772 AGAACGAGATTCAAGGCTGTGT 59.962 45.455 0.00 0.00 40.09 3.72
1643 2007 2.414481 CAGAACGAGATTCAAGGCTGTG 59.586 50.000 0.00 0.00 40.09 3.66
1645 2009 2.693069 ACAGAACGAGATTCAAGGCTG 58.307 47.619 0.00 0.00 40.09 4.85
1647 2011 3.067106 TGAACAGAACGAGATTCAAGGC 58.933 45.455 0.00 0.00 40.09 4.35
1648 2012 3.433615 GGTGAACAGAACGAGATTCAAGG 59.566 47.826 0.00 0.00 40.09 3.61
1651 2015 2.672714 CGGTGAACAGAACGAGATTCA 58.327 47.619 0.00 0.00 40.09 2.57
1652 2016 1.390463 GCGGTGAACAGAACGAGATTC 59.610 52.381 0.00 0.00 37.62 2.52
1663 2027 1.301716 GAAGAGCCTGCGGTGAACA 60.302 57.895 0.00 0.00 0.00 3.18
1666 2030 1.004560 CAAGAAGAGCCTGCGGTGA 60.005 57.895 0.00 0.00 0.00 4.02
1668 2032 0.392193 CATCAAGAAGAGCCTGCGGT 60.392 55.000 0.00 0.00 0.00 5.68
1678 2077 2.795231 TCTTCAGGCCCATCAAGAAG 57.205 50.000 0.00 4.27 37.60 2.85
1708 2107 4.096003 ATGTTCCGCCAGTCCCCG 62.096 66.667 0.00 0.00 0.00 5.73
2081 2486 2.719979 GAGCTGGCCGCATTGATG 59.280 61.111 19.30 0.00 42.61 3.07
2082 2487 2.517875 GGAGCTGGCCGCATTGAT 60.518 61.111 19.30 0.87 42.61 2.57
2083 2488 3.982316 CTGGAGCTGGCCGCATTGA 62.982 63.158 19.30 2.53 42.61 2.57
2117 2522 2.037136 CGGCTGCTCCAAGGAACAG 61.037 63.158 13.80 13.80 40.25 3.16
2118 2523 2.032528 CGGCTGCTCCAAGGAACA 59.967 61.111 0.00 0.00 34.01 3.18
2149 2555 2.437343 CGACGCAGCTTTCTCCGAC 61.437 63.158 0.00 0.00 0.00 4.79
2227 2645 0.250381 GGATGATCTCTGCTGGCTGG 60.250 60.000 0.00 0.00 0.00 4.85
2228 2646 0.468648 TGGATGATCTCTGCTGGCTG 59.531 55.000 0.00 0.00 0.00 4.85
2229 2647 0.469070 GTGGATGATCTCTGCTGGCT 59.531 55.000 0.00 0.00 0.00 4.75
2230 2648 0.879400 CGTGGATGATCTCTGCTGGC 60.879 60.000 0.00 0.00 0.00 4.85
2231 2649 0.879400 GCGTGGATGATCTCTGCTGG 60.879 60.000 0.00 0.00 0.00 4.85
2232 2650 0.179092 TGCGTGGATGATCTCTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
2233 2651 0.104487 CTGCGTGGATGATCTCTGCT 59.896 55.000 0.00 0.00 0.00 4.24
2234 2652 0.879400 CCTGCGTGGATGATCTCTGC 60.879 60.000 0.00 0.00 38.35 4.26
2235 2653 0.749049 TCCTGCGTGGATGATCTCTG 59.251 55.000 0.00 0.00 40.56 3.35
2236 2654 1.039068 CTCCTGCGTGGATGATCTCT 58.961 55.000 0.00 0.00 45.16 3.10
2237 2655 0.599728 GCTCCTGCGTGGATGATCTC 60.600 60.000 0.00 0.00 45.16 2.75
2238 2656 1.332889 TGCTCCTGCGTGGATGATCT 61.333 55.000 0.00 0.00 45.16 2.75
2239 2657 1.144716 TGCTCCTGCGTGGATGATC 59.855 57.895 0.00 0.00 45.16 2.92
2248 2666 2.740055 GTCCAGTGTGCTCCTGCG 60.740 66.667 0.00 0.00 43.34 5.18
2324 2765 2.357760 TACACGGAGGCCAAACGC 60.358 61.111 5.01 0.00 0.00 4.84
2325 2766 0.672401 ATGTACACGGAGGCCAAACG 60.672 55.000 5.01 9.06 0.00 3.60
2354 2795 7.817418 ATATTGCTAATTATTTCACCGTGGT 57.183 32.000 0.00 0.00 0.00 4.16
2489 3005 4.034394 ACTGCATGCATGACACTAATAACG 59.966 41.667 30.64 13.89 0.00 3.18
2491 3007 6.581712 TCTACTGCATGCATGACACTAATAA 58.418 36.000 30.64 3.61 0.00 1.40
2509 3026 5.066893 TGCTACCCAAATACGTACTCTACTG 59.933 44.000 0.00 0.00 0.00 2.74
2510 3027 5.195940 TGCTACCCAAATACGTACTCTACT 58.804 41.667 0.00 0.00 0.00 2.57
2514 3031 3.121544 GCTGCTACCCAAATACGTACTC 58.878 50.000 0.00 0.00 0.00 2.59
2515 3032 2.498481 TGCTGCTACCCAAATACGTACT 59.502 45.455 0.00 0.00 0.00 2.73
2516 3033 2.896168 TGCTGCTACCCAAATACGTAC 58.104 47.619 0.00 0.00 0.00 3.67
2517 3034 3.830744 ATGCTGCTACCCAAATACGTA 57.169 42.857 0.00 0.00 0.00 3.57
2518 3035 2.710096 ATGCTGCTACCCAAATACGT 57.290 45.000 0.00 0.00 0.00 3.57
2519 3036 4.370364 AAAATGCTGCTACCCAAATACG 57.630 40.909 0.00 0.00 0.00 3.06
2537 3054 6.128499 CGAAAGATCAACACCATACGGTAAAA 60.128 38.462 0.00 0.00 46.94 1.52
2538 3055 5.349270 CGAAAGATCAACACCATACGGTAAA 59.651 40.000 0.00 0.00 46.94 2.01
2539 3056 4.865925 CGAAAGATCAACACCATACGGTAA 59.134 41.667 0.00 0.00 46.94 2.85
2561 3104 3.500982 CAATGCTAACACACCCAAATCG 58.499 45.455 0.00 0.00 0.00 3.34
2611 3162 6.415867 GGCATCGAGTTCATCATTGTTAATTG 59.584 38.462 0.00 0.00 0.00 2.32
2618 5421 2.204237 TCGGCATCGAGTTCATCATTG 58.796 47.619 0.00 0.00 40.88 2.82
2630 5433 7.567571 GGTAATCATAATCATAATCGGCATCG 58.432 38.462 0.00 0.00 37.82 3.84
2640 5443 9.621629 AAGAAAACCACGGTAATCATAATCATA 57.378 29.630 0.00 0.00 0.00 2.15
2649 5452 3.252458 AGCACAAGAAAACCACGGTAATC 59.748 43.478 0.00 0.00 0.00 1.75
2654 5457 0.738389 ACAGCACAAGAAAACCACGG 59.262 50.000 0.00 0.00 0.00 4.94
2655 5458 2.450160 GAACAGCACAAGAAAACCACG 58.550 47.619 0.00 0.00 0.00 4.94
2675 5478 1.523758 CTCCCTCAAAAACGACAGGG 58.476 55.000 0.00 0.00 46.50 4.45
2722 5525 4.508124 GCCAATAAACATGGAGAGTCGTAG 59.492 45.833 0.00 0.00 40.56 3.51
2723 5526 4.161565 AGCCAATAAACATGGAGAGTCGTA 59.838 41.667 0.00 0.00 40.56 3.43
2725 5528 3.535561 AGCCAATAAACATGGAGAGTCG 58.464 45.455 0.00 0.00 40.56 4.18
2726 5529 3.879892 GGAGCCAATAAACATGGAGAGTC 59.120 47.826 0.00 0.00 40.56 3.36
2727 5530 3.525199 AGGAGCCAATAAACATGGAGAGT 59.475 43.478 0.00 0.00 40.56 3.24
2752 5560 2.610232 CCAACTTGAAATTTCCAGCCGG 60.610 50.000 16.96 13.77 0.00 6.13
2830 5657 1.030488 TCCCGATCTCTGACACGACC 61.030 60.000 0.00 0.00 0.00 4.79
2878 5711 0.462759 GGCCGAGGAGGAATCACTTG 60.463 60.000 0.00 0.00 45.00 3.16
2890 5733 3.154473 TCCTCCGATTGGCCGAGG 61.154 66.667 15.53 15.53 34.14 4.63
2942 5785 2.126031 GTCGCAACCTCCGTCTCC 60.126 66.667 0.00 0.00 0.00 3.71
2994 5837 1.456705 TTTGGGTTGGGTGGCTCAC 60.457 57.895 0.00 0.00 0.00 3.51
2995 5838 1.152567 CTTTGGGTTGGGTGGCTCA 60.153 57.895 0.00 0.00 0.00 4.26
2996 5839 1.908299 CCTTTGGGTTGGGTGGCTC 60.908 63.158 0.00 0.00 0.00 4.70
2997 5840 2.201210 CCTTTGGGTTGGGTGGCT 59.799 61.111 0.00 0.00 0.00 4.75
2998 5841 2.922503 CCCTTTGGGTTGGGTGGC 60.923 66.667 0.00 0.00 38.25 5.01
3018 5889 4.798344 CCCTGCTGCTGCTCCTGG 62.798 72.222 17.00 12.41 40.48 4.45
3028 5899 3.429141 CTCTGTTGCGCCCTGCTG 61.429 66.667 4.18 0.00 46.63 4.41
3055 5936 3.827898 GCACGGAGGAGGACGAGG 61.828 72.222 0.00 0.00 0.00 4.63
3073 5954 2.178521 CGTCTCCGTGGACTTCCG 59.821 66.667 4.06 0.00 39.43 4.30
3162 6043 2.203070 ATCCGCGGGAATGTCTGC 60.203 61.111 27.83 0.00 34.34 4.26
3257 6138 2.176273 GCTCTTGTGCATCGCCGAT 61.176 57.895 0.00 0.00 0.00 4.18
3292 6185 1.133407 CGTAGACAGGAGAGCTTGGTC 59.867 57.143 0.00 0.00 0.00 4.02
3327 6220 1.138047 GAGACGTACACATTCCGCGG 61.138 60.000 22.12 22.12 0.00 6.46
3344 6237 2.685897 CCTACTCCACGGAGAAGAAGAG 59.314 54.545 19.98 6.52 44.53 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.