Multiple sequence alignment - TraesCS1A01G277800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G277800 chr1A 100.000 3746 0 0 1 3746 473414146 473417891 0.000000e+00 6918.0
1 TraesCS1A01G277800 chr1A 91.414 198 9 5 735 928 473408937 473409130 7.980000e-67 265.0
2 TraesCS1A01G277800 chr1A 91.071 56 5 0 3480 3535 550657183 550657128 4.010000e-10 76.8
3 TraesCS1A01G277800 chr1D 95.250 2463 84 18 735 3182 373995036 373997480 0.000000e+00 3869.0
4 TraesCS1A01G277800 chr1D 93.287 864 50 4 2885 3742 374022959 374023820 0.000000e+00 1267.0
5 TraesCS1A01G277800 chr1D 92.727 55 4 0 3480 3534 458276859 458276805 3.100000e-11 80.5
6 TraesCS1A01G277800 chr1B 96.705 1912 51 5 1841 3742 498853570 498855479 0.000000e+00 3171.0
7 TraesCS1A01G277800 chr1B 94.013 1186 41 16 719 1884 498852407 498853582 0.000000e+00 1770.0
8 TraesCS1A01G277800 chr6A 87.321 489 28 13 5 492 22201682 22201227 2.560000e-146 529.0
9 TraesCS1A01G277800 chr6A 79.888 179 32 4 3562 3738 451425989 451425813 1.090000e-25 128.0
10 TraesCS1A01G277800 chr5D 84.393 346 37 9 3209 3554 370437548 370437876 1.300000e-84 324.0
11 TraesCS1A01G277800 chr5A 84.393 346 37 9 3209 3554 472908464 472908792 1.300000e-84 324.0
12 TraesCS1A01G277800 chr6D 82.153 353 39 10 3209 3554 409572738 409573073 7.920000e-72 281.0
13 TraesCS1A01G277800 chr2D 92.784 194 13 1 3551 3744 15341309 15341117 2.850000e-71 279.0
14 TraesCS1A01G277800 chr2B 90.625 192 18 0 3551 3742 27413481 27413290 4.800000e-64 255.0
15 TraesCS1A01G277800 chr2B 81.522 276 36 9 386 651 306784362 306784092 2.930000e-51 213.0
16 TraesCS1A01G277800 chr2B 88.889 72 7 1 15 85 707728546 707728617 1.850000e-13 87.9
17 TraesCS1A01G277800 chr2B 87.500 72 8 1 15 85 707727513 707727584 8.620000e-12 82.4
18 TraesCS1A01G277800 chr2B 85.714 70 9 1 29 98 707728972 707729040 5.190000e-09 73.1
19 TraesCS1A01G277800 chr6B 80.571 350 41 18 3209 3554 615187614 615187940 1.040000e-60 244.0
20 TraesCS1A01G277800 chr6B 85.714 161 21 2 3394 3554 615263294 615263452 6.430000e-38 169.0
21 TraesCS1A01G277800 chr6B 82.199 191 19 6 3209 3399 615259568 615259743 2.330000e-32 150.0
22 TraesCS1A01G277800 chr2A 82.988 241 34 7 83 321 602691050 602691285 1.050000e-50 211.0
23 TraesCS1A01G277800 chr3A 81.405 242 25 10 378 606 611974635 611974401 2.970000e-41 180.0
24 TraesCS1A01G277800 chrUn 83.237 173 29 0 3555 3727 19061092 19061264 3.870000e-35 159.0
25 TraesCS1A01G277800 chr7D 76.415 212 36 14 5 209 48827165 48826961 6.620000e-18 102.0
26 TraesCS1A01G277800 chr7D 74.879 207 34 12 10 209 294044443 294044638 1.120000e-10 78.7
27 TraesCS1A01G277800 chr4B 77.095 179 31 9 15 190 561647662 561647833 1.110000e-15 95.3
28 TraesCS1A01G277800 chr3B 96.774 31 1 0 2514 2544 173364735 173364765 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G277800 chr1A 473414146 473417891 3745 False 6918.0 6918 100.000 1 3746 1 chr1A.!!$F2 3745
1 TraesCS1A01G277800 chr1D 373995036 373997480 2444 False 3869.0 3869 95.250 735 3182 1 chr1D.!!$F1 2447
2 TraesCS1A01G277800 chr1D 374022959 374023820 861 False 1267.0 1267 93.287 2885 3742 1 chr1D.!!$F2 857
3 TraesCS1A01G277800 chr1B 498852407 498855479 3072 False 2470.5 3171 95.359 719 3742 2 chr1B.!!$F1 3023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 670 0.033109 CCCATTTTCTCCCCCTGGAC 60.033 60.0 0.00 0.0 35.03 4.02 F
681 682 0.108138 CCCTGGACGGTTAAGCTGAG 60.108 60.0 2.76 0.0 0.00 3.35 F
878 880 0.108329 AAACCGTCGGCGATCTCAAT 60.108 50.0 12.93 0.0 41.33 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1660 1678 1.725641 CTGCAGCTATTTGACGTCCA 58.274 50.000 14.12 0.0 0.00 4.02 R
2355 2409 6.312399 TGTTGACCATAGTGTTCAACATTC 57.688 37.500 15.91 0.0 43.53 2.67 R
3059 3114 9.546428 GGGATATTATGGAAAGAAACAAAATGG 57.454 33.333 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.258629 AGTCCCAATCATTATTTGAATTTGAGA 57.741 29.630 0.00 0.00 38.03 3.27
27 28 9.874205 GTCCCAATCATTATTTGAATTTGAGAA 57.126 29.630 0.00 0.00 38.03 2.87
28 29 9.874205 TCCCAATCATTATTTGAATTTGAGAAC 57.126 29.630 0.00 0.00 38.03 3.01
29 30 9.656040 CCCAATCATTATTTGAATTTGAGAACA 57.344 29.630 0.00 0.00 38.03 3.18
48 49 9.376075 TGAGAACAAAATTTTAAAACATGAGCA 57.624 25.926 1.97 0.51 0.00 4.26
62 63 8.441312 AAAACATGAGCATTTCTTGAATTTGT 57.559 26.923 0.00 0.00 35.51 2.83
63 64 7.416154 AACATGAGCATTTCTTGAATTTGTG 57.584 32.000 0.00 0.00 35.51 3.33
64 65 6.751157 ACATGAGCATTTCTTGAATTTGTGA 58.249 32.000 0.00 0.00 35.51 3.58
65 66 7.211573 ACATGAGCATTTCTTGAATTTGTGAA 58.788 30.769 0.00 0.00 35.51 3.18
66 67 7.170320 ACATGAGCATTTCTTGAATTTGTGAAC 59.830 33.333 0.00 0.00 35.51 3.18
67 68 6.571605 TGAGCATTTCTTGAATTTGTGAACA 58.428 32.000 0.00 0.00 0.00 3.18
68 69 7.040494 TGAGCATTTCTTGAATTTGTGAACAA 58.960 30.769 0.00 0.00 0.00 2.83
80 81 5.876612 TTTGTGAACAAATTTGCAAAGCT 57.123 30.435 18.19 4.36 40.55 3.74
81 82 4.861389 TGTGAACAAATTTGCAAAGCTG 57.139 36.364 18.19 17.74 0.00 4.24
82 83 3.622163 TGTGAACAAATTTGCAAAGCTGG 59.378 39.130 18.19 7.40 0.00 4.85
83 84 3.870419 GTGAACAAATTTGCAAAGCTGGA 59.130 39.130 18.19 3.57 0.00 3.86
84 85 4.332268 GTGAACAAATTTGCAAAGCTGGAA 59.668 37.500 18.19 4.79 0.00 3.53
85 86 5.007921 GTGAACAAATTTGCAAAGCTGGAAT 59.992 36.000 18.19 7.82 32.35 3.01
86 87 6.202570 GTGAACAAATTTGCAAAGCTGGAATA 59.797 34.615 18.19 3.62 32.35 1.75
87 88 6.935771 TGAACAAATTTGCAAAGCTGGAATAT 59.064 30.769 18.19 0.00 32.35 1.28
88 89 8.093307 TGAACAAATTTGCAAAGCTGGAATATA 58.907 29.630 18.19 0.00 32.35 0.86
89 90 9.101655 GAACAAATTTGCAAAGCTGGAATATAT 57.898 29.630 18.19 0.00 32.35 0.86
94 95 9.715121 AATTTGCAAAGCTGGAATATATATTGG 57.285 29.630 18.19 4.46 32.35 3.16
95 96 8.476064 TTTGCAAAGCTGGAATATATATTGGA 57.524 30.769 12.74 0.00 32.35 3.53
96 97 8.476064 TTGCAAAGCTGGAATATATATTGGAA 57.524 30.769 12.74 2.52 0.00 3.53
97 98 8.476064 TGCAAAGCTGGAATATATATTGGAAA 57.524 30.769 12.74 0.00 0.00 3.13
98 99 8.359642 TGCAAAGCTGGAATATATATTGGAAAC 58.640 33.333 12.74 0.00 0.00 2.78
99 100 7.538678 GCAAAGCTGGAATATATATTGGAAACG 59.461 37.037 12.74 0.00 0.00 3.60
100 101 8.783093 CAAAGCTGGAATATATATTGGAAACGA 58.217 33.333 12.74 0.00 0.00 3.85
101 102 8.553459 AAGCTGGAATATATATTGGAAACGAG 57.447 34.615 12.74 5.89 0.00 4.18
102 103 7.907389 AGCTGGAATATATATTGGAAACGAGA 58.093 34.615 12.74 0.00 0.00 4.04
103 104 8.375506 AGCTGGAATATATATTGGAAACGAGAA 58.624 33.333 12.74 0.00 0.00 2.87
104 105 9.167311 GCTGGAATATATATTGGAAACGAGAAT 57.833 33.333 12.74 0.00 0.00 2.40
133 134 8.891671 TTTTGAAATCCCAGAATTTCTTGAAG 57.108 30.769 9.88 0.00 43.17 3.02
134 135 7.838079 TTGAAATCCCAGAATTTCTTGAAGA 57.162 32.000 9.88 0.00 43.17 2.87
135 136 7.838079 TGAAATCCCAGAATTTCTTGAAGAA 57.162 32.000 3.02 3.02 43.17 2.52
136 137 7.661040 TGAAATCCCAGAATTTCTTGAAGAAC 58.339 34.615 7.21 0.00 43.17 3.01
137 138 5.886960 ATCCCAGAATTTCTTGAAGAACG 57.113 39.130 7.21 0.00 33.26 3.95
138 139 4.968259 TCCCAGAATTTCTTGAAGAACGA 58.032 39.130 7.21 0.00 33.26 3.85
139 140 5.373222 TCCCAGAATTTCTTGAAGAACGAA 58.627 37.500 7.21 0.00 33.26 3.85
140 141 5.238650 TCCCAGAATTTCTTGAAGAACGAAC 59.761 40.000 7.21 0.47 33.26 3.95
141 142 5.008613 CCCAGAATTTCTTGAAGAACGAACA 59.991 40.000 7.21 0.00 33.26 3.18
142 143 6.294176 CCCAGAATTTCTTGAAGAACGAACAT 60.294 38.462 7.21 0.00 33.26 2.71
143 144 7.141363 CCAGAATTTCTTGAAGAACGAACATT 58.859 34.615 7.21 4.41 33.26 2.71
144 145 7.649306 CCAGAATTTCTTGAAGAACGAACATTT 59.351 33.333 7.21 0.00 33.26 2.32
145 146 9.023967 CAGAATTTCTTGAAGAACGAACATTTT 57.976 29.630 7.21 0.00 33.26 1.82
146 147 9.586435 AGAATTTCTTGAAGAACGAACATTTTT 57.414 25.926 7.21 0.00 33.26 1.94
180 181 9.657121 TGTGAACAAAATTTTGAAAACAAGAAC 57.343 25.926 32.20 17.38 40.55 3.01
181 182 9.657121 GTGAACAAAATTTTGAAAACAAGAACA 57.343 25.926 32.20 14.88 40.55 3.18
194 195 9.875675 TGAAAACAAGAACATTTTTGAAACTTG 57.124 25.926 0.00 0.00 39.02 3.16
197 198 9.877137 AAACAAGAACATTTTTGAAACTTGAAC 57.123 25.926 0.00 0.00 37.34 3.18
198 199 8.600449 ACAAGAACATTTTTGAAACTTGAACA 57.400 26.923 0.00 0.00 37.34 3.18
199 200 9.218440 ACAAGAACATTTTTGAAACTTGAACAT 57.782 25.926 0.00 0.00 37.34 2.71
237 238 8.077836 TGAACAAATTTCAAAAACAAGAACGT 57.922 26.923 0.00 0.00 0.00 3.99
238 239 8.552034 TGAACAAATTTCAAAAACAAGAACGTT 58.448 25.926 0.00 0.00 0.00 3.99
239 240 9.376171 GAACAAATTTCAAAAACAAGAACGTTT 57.624 25.926 0.46 0.00 40.79 3.60
285 286 9.798994 ATTTGCAATTTTCAAACAAAATAAGCA 57.201 22.222 0.00 12.27 38.16 3.91
286 287 8.838452 TTGCAATTTTCAAACAAAATAAGCAG 57.162 26.923 0.00 0.00 39.55 4.24
287 288 7.416022 TGCAATTTTCAAACAAAATAAGCAGG 58.584 30.769 12.27 0.00 36.63 4.85
288 289 7.281774 TGCAATTTTCAAACAAAATAAGCAGGA 59.718 29.630 12.27 0.00 36.63 3.86
289 290 8.127954 GCAATTTTCAAACAAAATAAGCAGGAA 58.872 29.630 10.12 0.00 34.13 3.36
350 351 9.625747 AAAATAAAGCTTGGAAAAAGGAAATGA 57.374 25.926 0.00 0.00 0.00 2.57
351 352 9.625747 AAATAAAGCTTGGAAAAAGGAAATGAA 57.374 25.926 0.00 0.00 0.00 2.57
352 353 9.797642 AATAAAGCTTGGAAAAAGGAAATGAAT 57.202 25.926 0.00 0.00 0.00 2.57
355 356 8.782339 AAGCTTGGAAAAAGGAAATGAATATG 57.218 30.769 0.00 0.00 0.00 1.78
356 357 8.137745 AGCTTGGAAAAAGGAAATGAATATGA 57.862 30.769 0.00 0.00 0.00 2.15
357 358 8.596293 AGCTTGGAAAAAGGAAATGAATATGAA 58.404 29.630 0.00 0.00 0.00 2.57
358 359 9.218440 GCTTGGAAAAAGGAAATGAATATGAAA 57.782 29.630 0.00 0.00 0.00 2.69
481 482 9.542462 AAAGGTAGCAAGAAGAAAATAAAAACC 57.458 29.630 0.00 0.00 0.00 3.27
482 483 7.368059 AGGTAGCAAGAAGAAAATAAAAACCG 58.632 34.615 0.00 0.00 0.00 4.44
483 484 6.584942 GGTAGCAAGAAGAAAATAAAAACCGG 59.415 38.462 0.00 0.00 0.00 5.28
484 485 4.988540 AGCAAGAAGAAAATAAAAACCGGC 59.011 37.500 0.00 0.00 0.00 6.13
485 486 4.988540 GCAAGAAGAAAATAAAAACCGGCT 59.011 37.500 0.00 0.00 0.00 5.52
486 487 5.118664 GCAAGAAGAAAATAAAAACCGGCTC 59.881 40.000 0.00 0.00 0.00 4.70
487 488 6.212955 CAAGAAGAAAATAAAAACCGGCTCA 58.787 36.000 0.00 0.00 0.00 4.26
488 489 6.013842 AGAAGAAAATAAAAACCGGCTCAG 57.986 37.500 0.00 0.00 0.00 3.35
489 490 4.783764 AGAAAATAAAAACCGGCTCAGG 57.216 40.909 0.00 0.00 37.30 3.86
490 491 4.403734 AGAAAATAAAAACCGGCTCAGGA 58.596 39.130 0.00 0.00 34.73 3.86
491 492 4.830600 AGAAAATAAAAACCGGCTCAGGAA 59.169 37.500 0.00 0.00 34.73 3.36
492 493 4.783764 AAATAAAAACCGGCTCAGGAAG 57.216 40.909 0.00 0.00 34.73 3.46
493 494 2.194201 TAAAAACCGGCTCAGGAAGG 57.806 50.000 0.00 0.00 34.73 3.46
494 495 0.185175 AAAAACCGGCTCAGGAAGGT 59.815 50.000 0.00 0.00 38.88 3.50
495 496 3.576232 AACCGGCTCAGGAAGGTT 58.424 55.556 0.00 0.00 41.66 3.50
496 497 0.250770 AAACCGGCTCAGGAAGGTTC 60.251 55.000 0.00 0.00 45.25 3.62
497 498 2.125766 AACCGGCTCAGGAAGGTTCC 62.126 60.000 0.00 0.00 42.74 3.62
506 507 2.347630 GGAAGGTTCCCAAAACCGG 58.652 57.895 0.00 0.00 44.82 5.28
507 508 0.178984 GGAAGGTTCCCAAAACCGGA 60.179 55.000 9.46 0.00 44.82 5.14
508 509 1.694844 GAAGGTTCCCAAAACCGGAA 58.305 50.000 9.46 0.00 44.82 4.30
509 510 2.033372 GAAGGTTCCCAAAACCGGAAA 58.967 47.619 9.46 0.00 44.82 3.13
510 511 2.162264 AGGTTCCCAAAACCGGAAAA 57.838 45.000 9.46 0.00 44.82 2.29
511 512 1.758280 AGGTTCCCAAAACCGGAAAAC 59.242 47.619 9.46 1.19 44.82 2.43
512 513 1.202557 GGTTCCCAAAACCGGAAAACC 60.203 52.381 9.46 7.00 41.03 3.27
513 514 1.121378 TTCCCAAAACCGGAAAACCC 58.879 50.000 9.46 0.00 36.44 4.11
514 515 0.759812 TCCCAAAACCGGAAAACCCC 60.760 55.000 9.46 0.00 0.00 4.95
521 522 2.745037 CGGAAAACCCCGTCCAGA 59.255 61.111 0.00 0.00 44.23 3.86
522 523 1.071814 CGGAAAACCCCGTCCAGAA 59.928 57.895 0.00 0.00 44.23 3.02
523 524 0.535553 CGGAAAACCCCGTCCAGAAA 60.536 55.000 0.00 0.00 44.23 2.52
524 525 0.956633 GGAAAACCCCGTCCAGAAAC 59.043 55.000 0.00 0.00 33.79 2.78
525 526 0.956633 GAAAACCCCGTCCAGAAACC 59.043 55.000 0.00 0.00 0.00 3.27
526 527 0.554305 AAAACCCCGTCCAGAAACCT 59.446 50.000 0.00 0.00 0.00 3.50
527 528 0.109913 AAACCCCGTCCAGAAACCTC 59.890 55.000 0.00 0.00 0.00 3.85
528 529 0.767060 AACCCCGTCCAGAAACCTCT 60.767 55.000 0.00 0.00 0.00 3.69
529 530 0.115745 ACCCCGTCCAGAAACCTCTA 59.884 55.000 0.00 0.00 0.00 2.43
530 531 0.824759 CCCCGTCCAGAAACCTCTAG 59.175 60.000 0.00 0.00 0.00 2.43
531 532 1.618888 CCCCGTCCAGAAACCTCTAGA 60.619 57.143 0.00 0.00 0.00 2.43
532 533 1.751924 CCCGTCCAGAAACCTCTAGAG 59.248 57.143 13.18 13.18 0.00 2.43
533 534 2.620886 CCCGTCCAGAAACCTCTAGAGA 60.621 54.545 21.76 0.00 0.00 3.10
534 535 2.685897 CCGTCCAGAAACCTCTAGAGAG 59.314 54.545 21.76 13.24 41.71 3.20
535 536 3.349022 CGTCCAGAAACCTCTAGAGAGT 58.651 50.000 21.76 13.88 40.48 3.24
536 537 3.759618 CGTCCAGAAACCTCTAGAGAGTT 59.240 47.826 21.76 18.57 40.48 3.01
537 538 4.142556 CGTCCAGAAACCTCTAGAGAGTTC 60.143 50.000 21.76 20.58 40.48 3.01
538 539 4.158949 GTCCAGAAACCTCTAGAGAGTTCC 59.841 50.000 21.76 11.15 40.48 3.62
539 540 3.449377 CCAGAAACCTCTAGAGAGTTCCC 59.551 52.174 21.76 15.93 40.48 3.97
540 541 3.129638 CAGAAACCTCTAGAGAGTTCCCG 59.870 52.174 21.76 12.69 40.48 5.14
541 542 3.010361 AGAAACCTCTAGAGAGTTCCCGA 59.990 47.826 21.76 0.00 40.48 5.14
542 543 3.453059 AACCTCTAGAGAGTTCCCGAA 57.547 47.619 21.76 0.00 40.48 4.30
543 544 3.453059 ACCTCTAGAGAGTTCCCGAAA 57.547 47.619 21.76 0.00 40.48 3.46
544 545 3.090790 ACCTCTAGAGAGTTCCCGAAAC 58.909 50.000 21.76 0.00 40.48 2.78
545 546 2.427812 CCTCTAGAGAGTTCCCGAAACC 59.572 54.545 21.76 0.00 40.48 3.27
546 547 3.090037 CTCTAGAGAGTTCCCGAAACCA 58.910 50.000 15.05 0.00 38.76 3.67
547 548 3.503365 TCTAGAGAGTTCCCGAAACCAA 58.497 45.455 0.00 0.00 38.76 3.67
548 549 2.841442 AGAGAGTTCCCGAAACCAAG 57.159 50.000 0.00 0.00 38.76 3.61
549 550 2.326428 AGAGAGTTCCCGAAACCAAGA 58.674 47.619 0.00 0.00 38.76 3.02
550 551 2.907042 AGAGAGTTCCCGAAACCAAGAT 59.093 45.455 0.00 0.00 38.76 2.40
551 552 3.055747 AGAGAGTTCCCGAAACCAAGATC 60.056 47.826 0.00 0.00 38.76 2.75
552 553 2.000447 GAGTTCCCGAAACCAAGATCG 59.000 52.381 0.00 0.00 38.76 3.69
553 554 0.446616 GTTCCCGAAACCAAGATCGC 59.553 55.000 0.00 0.00 37.73 4.58
554 555 0.323629 TTCCCGAAACCAAGATCGCT 59.676 50.000 0.00 0.00 37.73 4.93
555 556 0.391130 TCCCGAAACCAAGATCGCTG 60.391 55.000 0.00 0.00 37.73 5.18
556 557 0.391130 CCCGAAACCAAGATCGCTGA 60.391 55.000 0.00 0.00 37.73 4.26
557 558 1.438651 CCGAAACCAAGATCGCTGAA 58.561 50.000 0.00 0.00 37.73 3.02
558 559 1.394917 CCGAAACCAAGATCGCTGAAG 59.605 52.381 0.00 0.00 37.73 3.02
559 560 1.201965 CGAAACCAAGATCGCTGAAGC 60.202 52.381 0.00 0.00 37.78 3.86
560 561 1.806542 GAAACCAAGATCGCTGAAGCA 59.193 47.619 2.79 0.00 42.21 3.91
561 562 1.896220 AACCAAGATCGCTGAAGCAA 58.104 45.000 2.79 0.00 42.21 3.91
562 563 2.119801 ACCAAGATCGCTGAAGCAAT 57.880 45.000 2.79 0.00 42.21 3.56
563 564 3.266510 ACCAAGATCGCTGAAGCAATA 57.733 42.857 2.79 0.00 42.21 1.90
564 565 3.609853 ACCAAGATCGCTGAAGCAATAA 58.390 40.909 2.79 0.00 42.21 1.40
565 566 4.009675 ACCAAGATCGCTGAAGCAATAAA 58.990 39.130 2.79 0.00 42.21 1.40
566 567 4.142600 ACCAAGATCGCTGAAGCAATAAAC 60.143 41.667 2.79 0.00 42.21 2.01
567 568 3.933155 AGATCGCTGAAGCAATAAACG 57.067 42.857 2.79 0.00 42.21 3.60
568 569 2.609459 AGATCGCTGAAGCAATAAACGG 59.391 45.455 2.79 0.00 42.21 4.44
569 570 1.083489 TCGCTGAAGCAATAAACGGG 58.917 50.000 2.79 0.00 42.21 5.28
570 571 0.523335 CGCTGAAGCAATAAACGGGC 60.523 55.000 2.79 0.00 42.21 6.13
571 572 0.179137 GCTGAAGCAATAAACGGGCC 60.179 55.000 0.00 0.00 41.59 5.80
572 573 1.173043 CTGAAGCAATAAACGGGCCA 58.827 50.000 4.39 0.00 0.00 5.36
573 574 1.133025 CTGAAGCAATAAACGGGCCAG 59.867 52.381 4.39 1.85 0.00 4.85
574 575 0.179137 GAAGCAATAAACGGGCCAGC 60.179 55.000 4.39 0.00 0.00 4.85
575 576 1.604147 AAGCAATAAACGGGCCAGCC 61.604 55.000 4.39 0.00 0.00 4.85
585 586 4.785453 GGCCAGCCCAAGACGAGG 62.785 72.222 0.00 0.00 0.00 4.63
592 593 3.211288 CCAAGACGAGGGATCGCT 58.789 61.111 12.81 12.81 36.44 4.93
593 594 2.415825 CCAAGACGAGGGATCGCTA 58.584 57.895 12.94 0.00 36.44 4.26
594 595 0.312416 CCAAGACGAGGGATCGCTAG 59.688 60.000 12.94 15.04 36.44 3.42
595 596 0.312416 CAAGACGAGGGATCGCTAGG 59.688 60.000 21.03 14.63 36.44 3.02
596 597 0.106619 AAGACGAGGGATCGCTAGGT 60.107 55.000 21.03 17.32 36.44 3.08
597 598 0.535553 AGACGAGGGATCGCTAGGTC 60.536 60.000 24.48 24.48 36.44 3.85
598 599 0.535553 GACGAGGGATCGCTAGGTCT 60.536 60.000 24.54 8.18 36.44 3.85
599 600 0.535553 ACGAGGGATCGCTAGGTCTC 60.536 60.000 21.03 4.90 36.44 3.36
600 601 1.238625 CGAGGGATCGCTAGGTCTCC 61.239 65.000 12.94 0.00 0.00 3.71
601 602 0.896479 GAGGGATCGCTAGGTCTCCC 60.896 65.000 12.94 0.00 46.56 4.30
602 603 1.154221 GGGATCGCTAGGTCTCCCT 59.846 63.158 1.84 0.00 43.45 4.20
603 604 1.182385 GGGATCGCTAGGTCTCCCTG 61.182 65.000 1.84 0.00 43.45 4.45
604 605 0.468400 GGATCGCTAGGTCTCCCTGT 60.468 60.000 0.00 0.00 42.67 4.00
605 606 0.671251 GATCGCTAGGTCTCCCTGTG 59.329 60.000 0.00 0.00 42.67 3.66
606 607 1.395826 ATCGCTAGGTCTCCCTGTGC 61.396 60.000 0.00 0.00 42.67 4.57
607 608 2.496817 GCTAGGTCTCCCTGTGCG 59.503 66.667 0.00 0.00 42.67 5.34
608 609 2.052690 GCTAGGTCTCCCTGTGCGA 61.053 63.158 0.00 0.00 42.67 5.10
609 610 1.605058 GCTAGGTCTCCCTGTGCGAA 61.605 60.000 0.00 0.00 42.67 4.70
610 611 0.895530 CTAGGTCTCCCTGTGCGAAA 59.104 55.000 0.00 0.00 42.67 3.46
611 612 0.606604 TAGGTCTCCCTGTGCGAAAC 59.393 55.000 0.00 0.00 42.67 2.78
612 613 2.027625 GGTCTCCCTGTGCGAAACG 61.028 63.158 0.00 0.00 0.00 3.60
613 614 2.027625 GTCTCCCTGTGCGAAACGG 61.028 63.158 0.00 0.00 34.63 4.44
614 615 3.423154 CTCCCTGTGCGAAACGGC 61.423 66.667 0.00 0.00 33.36 5.68
617 618 4.072088 CCTGTGCGAAACGGCGAC 62.072 66.667 16.62 0.00 33.36 5.19
618 619 3.334751 CTGTGCGAAACGGCGACA 61.335 61.111 16.62 5.11 35.06 4.35
619 620 2.663520 TGTGCGAAACGGCGACAT 60.664 55.556 16.62 0.00 35.06 3.06
620 621 2.170260 CTGTGCGAAACGGCGACATT 62.170 55.000 16.62 5.35 35.06 2.71
621 622 1.082366 GTGCGAAACGGCGACATTT 60.082 52.632 16.62 3.19 35.06 2.32
622 623 1.058057 GTGCGAAACGGCGACATTTC 61.058 55.000 16.62 12.67 35.06 2.17
634 635 1.802839 GACATTTCGACGCAATGAGC 58.197 50.000 23.76 12.77 35.51 4.26
644 645 2.006772 GCAATGAGCGTCCGTTAGG 58.993 57.895 0.00 0.00 39.46 2.69
645 646 1.429148 GCAATGAGCGTCCGTTAGGG 61.429 60.000 0.00 0.00 38.33 3.53
646 647 0.174845 CAATGAGCGTCCGTTAGGGA 59.825 55.000 0.00 0.00 44.68 4.20
664 665 2.398588 GGAATTCCCATTTTCTCCCCC 58.601 52.381 14.03 0.00 34.14 5.40
665 666 2.023015 GGAATTCCCATTTTCTCCCCCT 60.023 50.000 14.03 0.00 34.14 4.79
666 667 2.854736 ATTCCCATTTTCTCCCCCTG 57.145 50.000 0.00 0.00 0.00 4.45
667 668 0.709992 TTCCCATTTTCTCCCCCTGG 59.290 55.000 0.00 0.00 0.00 4.45
668 669 0.178816 TCCCATTTTCTCCCCCTGGA 60.179 55.000 0.00 0.00 38.75 3.86
669 670 0.033109 CCCATTTTCTCCCCCTGGAC 60.033 60.000 0.00 0.00 35.03 4.02
670 671 0.394352 CCATTTTCTCCCCCTGGACG 60.394 60.000 0.00 0.00 35.03 4.79
671 672 0.394352 CATTTTCTCCCCCTGGACGG 60.394 60.000 0.00 0.00 35.03 4.79
672 673 0.845102 ATTTTCTCCCCCTGGACGGT 60.845 55.000 0.00 0.00 35.03 4.83
673 674 1.063654 TTTTCTCCCCCTGGACGGTT 61.064 55.000 0.00 0.00 35.03 4.44
674 675 0.178897 TTTCTCCCCCTGGACGGTTA 60.179 55.000 0.00 0.00 35.03 2.85
675 676 0.178897 TTCTCCCCCTGGACGGTTAA 60.179 55.000 0.00 0.00 35.03 2.01
676 677 0.616679 TCTCCCCCTGGACGGTTAAG 60.617 60.000 0.00 0.00 35.03 1.85
677 678 2.253403 CTCCCCCTGGACGGTTAAGC 62.253 65.000 0.00 0.00 35.03 3.09
678 679 2.298661 CCCCCTGGACGGTTAAGCT 61.299 63.158 2.76 0.00 0.00 3.74
679 680 1.078426 CCCCTGGACGGTTAAGCTG 60.078 63.158 2.76 0.00 0.00 4.24
680 681 1.550130 CCCCTGGACGGTTAAGCTGA 61.550 60.000 2.76 0.00 0.00 4.26
681 682 0.108138 CCCTGGACGGTTAAGCTGAG 60.108 60.000 2.76 0.00 0.00 3.35
682 683 0.608640 CCTGGACGGTTAAGCTGAGT 59.391 55.000 2.76 0.00 0.00 3.41
683 684 1.822990 CCTGGACGGTTAAGCTGAGTA 59.177 52.381 2.76 0.00 0.00 2.59
684 685 2.416972 CCTGGACGGTTAAGCTGAGTAC 60.417 54.545 2.76 0.00 0.00 2.73
685 686 1.200716 TGGACGGTTAAGCTGAGTACG 59.799 52.381 2.76 0.00 0.00 3.67
686 687 1.266466 GACGGTTAAGCTGAGTACGC 58.734 55.000 2.76 0.00 0.00 4.42
687 688 0.886563 ACGGTTAAGCTGAGTACGCT 59.113 50.000 2.76 0.00 39.94 5.07
688 689 1.135460 ACGGTTAAGCTGAGTACGCTC 60.135 52.381 2.76 0.00 41.97 5.03
689 690 1.798079 CGGTTAAGCTGAGTACGCTCC 60.798 57.143 2.76 0.00 40.95 4.70
690 691 1.471153 GGTTAAGCTGAGTACGCTCCC 60.471 57.143 0.00 0.00 40.95 4.30
691 692 1.477295 GTTAAGCTGAGTACGCTCCCT 59.523 52.381 0.00 0.00 40.95 4.20
692 693 1.390565 TAAGCTGAGTACGCTCCCTC 58.609 55.000 0.00 0.00 40.95 4.30
693 694 0.612174 AAGCTGAGTACGCTCCCTCA 60.612 55.000 0.00 0.00 40.95 3.86
694 695 0.612174 AGCTGAGTACGCTCCCTCAA 60.612 55.000 0.00 0.00 40.95 3.02
695 696 0.246635 GCTGAGTACGCTCCCTCAAA 59.753 55.000 0.00 0.00 40.95 2.69
696 697 1.337823 GCTGAGTACGCTCCCTCAAAA 60.338 52.381 0.00 0.00 40.95 2.44
697 698 2.870435 GCTGAGTACGCTCCCTCAAAAA 60.870 50.000 0.00 0.00 40.95 1.94
775 777 0.726827 TCAATGCTTAAGCGCGAAGG 59.273 50.000 21.97 8.65 45.83 3.46
817 819 0.181350 GTCATCATTCCGGGGAAGCT 59.819 55.000 0.00 0.00 37.56 3.74
818 820 1.416401 GTCATCATTCCGGGGAAGCTA 59.584 52.381 0.00 0.00 37.56 3.32
819 821 2.039084 GTCATCATTCCGGGGAAGCTAT 59.961 50.000 0.00 0.00 37.56 2.97
864 866 0.748005 CCATCCTGCTACCCAAACCG 60.748 60.000 0.00 0.00 0.00 4.44
869 871 3.122971 GCTACCCAAACCGTCGGC 61.123 66.667 12.28 0.00 0.00 5.54
870 872 2.812178 CTACCCAAACCGTCGGCG 60.812 66.667 12.28 0.29 37.95 6.46
871 873 3.285523 CTACCCAAACCGTCGGCGA 62.286 63.158 12.93 4.99 41.33 5.54
872 874 2.567564 CTACCCAAACCGTCGGCGAT 62.568 60.000 12.93 0.00 41.33 4.58
873 875 2.561549 TACCCAAACCGTCGGCGATC 62.562 60.000 12.93 6.12 41.33 3.69
874 876 2.125673 CCAAACCGTCGGCGATCT 60.126 61.111 12.93 0.00 41.33 2.75
875 877 2.165301 CCAAACCGTCGGCGATCTC 61.165 63.158 12.93 0.00 41.33 2.75
876 878 1.445410 CAAACCGTCGGCGATCTCA 60.445 57.895 12.93 0.00 41.33 3.27
877 879 1.011968 CAAACCGTCGGCGATCTCAA 61.012 55.000 12.93 0.00 41.33 3.02
878 880 0.108329 AAACCGTCGGCGATCTCAAT 60.108 50.000 12.93 0.00 41.33 2.57
879 881 0.527817 AACCGTCGGCGATCTCAATC 60.528 55.000 12.93 0.00 41.33 2.67
880 882 1.065764 CCGTCGGCGATCTCAATCA 59.934 57.895 12.93 0.00 41.33 2.57
881 883 0.527600 CCGTCGGCGATCTCAATCAA 60.528 55.000 12.93 0.00 41.33 2.57
888 890 2.219674 GGCGATCTCAATCAACATCGAC 59.780 50.000 4.42 0.00 40.48 4.20
895 897 4.929211 TCTCAATCAACATCGACGAACAAT 59.071 37.500 0.00 0.00 0.00 2.71
896 898 5.408299 TCTCAATCAACATCGACGAACAATT 59.592 36.000 0.00 0.00 0.00 2.32
900 907 4.303282 TCAACATCGACGAACAATTCTCA 58.697 39.130 0.00 0.00 0.00 3.27
928 935 1.496857 TCTCACCTGATCCGAGATCCT 59.503 52.381 10.25 0.00 30.94 3.24
1232 1250 0.326048 CTCTCTCACCCCTCCATGGT 60.326 60.000 12.58 0.00 36.21 3.55
1359 1377 1.382420 AGACAGGCTAGGGCTCCAG 60.382 63.158 0.00 0.00 35.88 3.86
1458 1476 1.956043 GCACCTTGCGTTTGATCCA 59.044 52.632 0.00 0.00 31.71 3.41
1468 1486 2.346803 CGTTTGATCCAACCGAGTCAT 58.653 47.619 4.21 0.00 31.14 3.06
1482 1500 3.986572 CCGAGTCATTGCACTATGAGATC 59.013 47.826 1.21 3.18 35.32 2.75
1506 1524 1.446272 CGTCCCTCAAACGCCTCTC 60.446 63.158 0.00 0.00 32.84 3.20
1507 1525 1.079057 GTCCCTCAAACGCCTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
1660 1678 2.023414 TTCCGACGAGGTGTTGCACT 62.023 55.000 0.00 0.00 41.99 4.40
1833 1854 5.849357 TGTATTTGTAACGCGAATGTCTT 57.151 34.783 15.93 0.00 33.44 3.01
1848 1869 1.552337 TGTCTTCTCCATGAGCCTGTC 59.448 52.381 0.00 0.00 0.00 3.51
1894 1946 6.866770 TCGAGCCTGTTATATATTTGTAGCAC 59.133 38.462 0.00 0.00 0.00 4.40
2023 2077 1.271656 CTTGCCCTGCTTTTCCTCTTG 59.728 52.381 0.00 0.00 0.00 3.02
2145 2199 5.238214 GCCAACAGATATTGAGGAATCAGAC 59.762 44.000 0.00 0.00 0.00 3.51
2149 2203 9.205719 CAACAGATATTGAGGAATCAGACTATG 57.794 37.037 0.00 0.00 0.00 2.23
2182 2236 2.046217 GACGGTCAAGGGAAGGGC 60.046 66.667 2.62 0.00 0.00 5.19
2929 2984 8.647143 AAATTTCGTTTGTGAACTGATTGATT 57.353 26.923 0.00 0.00 33.51 2.57
3224 3279 5.640783 CAGAGTTTCTCATCAGCAACATACA 59.359 40.000 0.00 0.00 32.06 2.29
3245 3300 2.693267 ACCCCACTTCGATTAAGAGC 57.307 50.000 0.00 0.00 38.67 4.09
3671 3740 0.536687 TAGGTATGACGGCCTCTCGG 60.537 60.000 0.00 0.00 36.38 4.63
3697 3766 0.608856 AATGTCGCCCTGATGTTGCA 60.609 50.000 0.00 0.00 0.00 4.08
3701 3770 1.517694 CGCCCTGATGTTGCATTGC 60.518 57.895 0.46 0.46 0.00 3.56
3742 3811 4.293648 GGGCGGTTTGTGGTTGCC 62.294 66.667 0.00 0.00 44.98 4.52
3743 3812 3.532155 GGCGGTTTGTGGTTGCCA 61.532 61.111 0.00 0.00 45.06 4.92
3744 3813 2.496817 GCGGTTTGTGGTTGCCAA 59.503 55.556 0.00 0.00 34.18 4.52
3745 3814 1.153549 GCGGTTTGTGGTTGCCAAA 60.154 52.632 0.00 0.00 34.18 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.258629 TCTCAAATTCAAATAATGATTGGGACT 57.741 29.630 0.00 0.00 34.23 3.85
1 2 9.874205 TTCTCAAATTCAAATAATGATTGGGAC 57.126 29.630 0.00 0.00 37.29 4.46
2 3 9.874205 GTTCTCAAATTCAAATAATGATTGGGA 57.126 29.630 0.00 0.00 36.30 4.37
3 4 9.656040 TGTTCTCAAATTCAAATAATGATTGGG 57.344 29.630 0.00 0.00 38.03 4.12
22 23 9.376075 TGCTCATGTTTTAAAATTTTGTTCTCA 57.624 25.926 13.76 6.84 0.00 3.27
36 37 9.545105 ACAAATTCAAGAAATGCTCATGTTTTA 57.455 25.926 0.00 0.00 0.00 1.52
37 38 8.339714 CACAAATTCAAGAAATGCTCATGTTTT 58.660 29.630 0.00 0.00 0.00 2.43
38 39 7.711772 TCACAAATTCAAGAAATGCTCATGTTT 59.288 29.630 0.00 0.00 0.00 2.83
39 40 7.211573 TCACAAATTCAAGAAATGCTCATGTT 58.788 30.769 0.00 0.00 0.00 2.71
40 41 6.751157 TCACAAATTCAAGAAATGCTCATGT 58.249 32.000 0.00 0.00 0.00 3.21
41 42 7.170151 TGTTCACAAATTCAAGAAATGCTCATG 59.830 33.333 0.00 0.00 0.00 3.07
42 43 7.211573 TGTTCACAAATTCAAGAAATGCTCAT 58.788 30.769 0.00 0.00 0.00 2.90
43 44 6.571605 TGTTCACAAATTCAAGAAATGCTCA 58.428 32.000 0.00 0.00 0.00 4.26
44 45 7.467557 TTGTTCACAAATTCAAGAAATGCTC 57.532 32.000 0.00 0.00 32.11 4.26
45 46 7.846644 TTTGTTCACAAATTCAAGAAATGCT 57.153 28.000 0.79 0.00 40.55 3.79
59 60 4.094590 CCAGCTTTGCAAATTTGTTCACAA 59.905 37.500 19.03 11.56 0.00 3.33
60 61 3.622163 CCAGCTTTGCAAATTTGTTCACA 59.378 39.130 19.03 6.12 0.00 3.58
61 62 3.870419 TCCAGCTTTGCAAATTTGTTCAC 59.130 39.130 19.03 3.53 0.00 3.18
62 63 4.134379 TCCAGCTTTGCAAATTTGTTCA 57.866 36.364 19.03 7.18 0.00 3.18
63 64 5.678132 ATTCCAGCTTTGCAAATTTGTTC 57.322 34.783 19.03 4.59 0.00 3.18
68 69 9.715121 CCAATATATATTCCAGCTTTGCAAATT 57.285 29.630 13.23 1.16 0.00 1.82
69 70 9.092338 TCCAATATATATTCCAGCTTTGCAAAT 57.908 29.630 13.23 0.00 0.00 2.32
70 71 8.476064 TCCAATATATATTCCAGCTTTGCAAA 57.524 30.769 12.14 12.14 0.00 3.68
71 72 8.476064 TTCCAATATATATTCCAGCTTTGCAA 57.524 30.769 4.93 0.00 0.00 4.08
72 73 8.359642 GTTTCCAATATATATTCCAGCTTTGCA 58.640 33.333 4.93 0.00 0.00 4.08
73 74 7.538678 CGTTTCCAATATATATTCCAGCTTTGC 59.461 37.037 4.93 0.00 0.00 3.68
74 75 8.783093 TCGTTTCCAATATATATTCCAGCTTTG 58.217 33.333 4.93 0.00 0.00 2.77
75 76 8.918202 TCGTTTCCAATATATATTCCAGCTTT 57.082 30.769 4.93 0.00 0.00 3.51
76 77 8.375506 TCTCGTTTCCAATATATATTCCAGCTT 58.624 33.333 4.93 0.00 0.00 3.74
77 78 7.907389 TCTCGTTTCCAATATATATTCCAGCT 58.093 34.615 4.93 0.00 0.00 4.24
78 79 8.547967 TTCTCGTTTCCAATATATATTCCAGC 57.452 34.615 4.93 0.00 0.00 4.85
107 108 9.328845 CTTCAAGAAATTCTGGGATTTCAAAAA 57.671 29.630 14.48 6.28 44.60 1.94
108 109 8.703743 TCTTCAAGAAATTCTGGGATTTCAAAA 58.296 29.630 14.48 6.54 44.60 2.44
109 110 8.248904 TCTTCAAGAAATTCTGGGATTTCAAA 57.751 30.769 14.48 6.80 44.60 2.69
110 111 7.838079 TCTTCAAGAAATTCTGGGATTTCAA 57.162 32.000 14.48 2.69 44.60 2.69
111 112 7.522073 CGTTCTTCAAGAAATTCTGGGATTTCA 60.522 37.037 14.48 0.00 44.60 2.69
112 113 6.803807 CGTTCTTCAAGAAATTCTGGGATTTC 59.196 38.462 0.00 6.30 43.24 2.17
113 114 6.490040 TCGTTCTTCAAGAAATTCTGGGATTT 59.510 34.615 0.00 0.00 35.75 2.17
114 115 6.003950 TCGTTCTTCAAGAAATTCTGGGATT 58.996 36.000 0.00 0.00 35.75 3.01
115 116 5.560724 TCGTTCTTCAAGAAATTCTGGGAT 58.439 37.500 0.00 0.00 35.75 3.85
116 117 4.968259 TCGTTCTTCAAGAAATTCTGGGA 58.032 39.130 0.00 0.00 35.75 4.37
117 118 5.008613 TGTTCGTTCTTCAAGAAATTCTGGG 59.991 40.000 0.00 0.00 35.75 4.45
118 119 6.060028 TGTTCGTTCTTCAAGAAATTCTGG 57.940 37.500 0.00 0.00 35.75 3.86
119 120 8.566008 AAATGTTCGTTCTTCAAGAAATTCTG 57.434 30.769 0.00 0.00 35.75 3.02
120 121 9.586435 AAAAATGTTCGTTCTTCAAGAAATTCT 57.414 25.926 0.00 0.00 35.75 2.40
154 155 9.657121 GTTCTTGTTTTCAAAATTTTGTTCACA 57.343 25.926 25.98 21.99 39.47 3.58
155 156 9.657121 TGTTCTTGTTTTCAAAATTTTGTTCAC 57.343 25.926 25.98 20.21 39.47 3.18
168 169 9.875675 CAAGTTTCAAAAATGTTCTTGTTTTCA 57.124 25.926 0.00 0.00 0.00 2.69
171 172 9.877137 GTTCAAGTTTCAAAAATGTTCTTGTTT 57.123 25.926 0.00 0.00 34.43 2.83
172 173 9.050601 TGTTCAAGTTTCAAAAATGTTCTTGTT 57.949 25.926 0.00 0.00 34.43 2.83
173 174 8.600449 TGTTCAAGTTTCAAAAATGTTCTTGT 57.400 26.923 0.00 0.00 34.43 3.16
211 212 8.716909 ACGTTCTTGTTTTTGAAATTTGTTCAT 58.283 25.926 0.00 0.00 0.00 2.57
212 213 8.077836 ACGTTCTTGTTTTTGAAATTTGTTCA 57.922 26.923 0.00 0.00 0.00 3.18
213 214 8.927315 AACGTTCTTGTTTTTGAAATTTGTTC 57.073 26.923 0.00 0.00 0.00 3.18
214 215 9.723447 AAAACGTTCTTGTTTTTGAAATTTGTT 57.277 22.222 0.00 0.00 46.84 2.83
259 260 9.798994 TGCTTATTTTGTTTGAAAATTGCAAAT 57.201 22.222 1.71 0.00 37.54 2.32
260 261 9.286946 CTGCTTATTTTGTTTGAAAATTGCAAA 57.713 25.926 1.71 0.00 37.39 3.68
261 262 7.914346 CCTGCTTATTTTGTTTGAAAATTGCAA 59.086 29.630 0.00 0.00 37.39 4.08
262 263 7.281774 TCCTGCTTATTTTGTTTGAAAATTGCA 59.718 29.630 14.04 14.04 36.51 4.08
263 264 7.638134 TCCTGCTTATTTTGTTTGAAAATTGC 58.362 30.769 0.00 0.00 32.64 3.56
324 325 9.625747 TCATTTCCTTTTTCCAAGCTTTATTTT 57.374 25.926 0.00 0.00 0.00 1.82
325 326 9.625747 TTCATTTCCTTTTTCCAAGCTTTATTT 57.374 25.926 0.00 0.00 0.00 1.40
326 327 9.797642 ATTCATTTCCTTTTTCCAAGCTTTATT 57.202 25.926 0.00 0.00 0.00 1.40
329 330 9.223099 CATATTCATTTCCTTTTTCCAAGCTTT 57.777 29.630 0.00 0.00 0.00 3.51
330 331 8.596293 TCATATTCATTTCCTTTTTCCAAGCTT 58.404 29.630 0.00 0.00 0.00 3.74
331 332 8.137745 TCATATTCATTTCCTTTTTCCAAGCT 57.862 30.769 0.00 0.00 0.00 3.74
332 333 8.776376 TTCATATTCATTTCCTTTTTCCAAGC 57.224 30.769 0.00 0.00 0.00 4.01
362 363 6.782298 TTTTTCGTTCCGTTTTTCCTTTTT 57.218 29.167 0.00 0.00 0.00 1.94
363 364 6.971527 ATTTTTCGTTCCGTTTTTCCTTTT 57.028 29.167 0.00 0.00 0.00 2.27
364 365 8.382130 GTTTATTTTTCGTTCCGTTTTTCCTTT 58.618 29.630 0.00 0.00 0.00 3.11
365 366 7.544915 TGTTTATTTTTCGTTCCGTTTTTCCTT 59.455 29.630 0.00 0.00 0.00 3.36
366 367 7.034397 TGTTTATTTTTCGTTCCGTTTTTCCT 58.966 30.769 0.00 0.00 0.00 3.36
367 368 7.219372 TGTTTATTTTTCGTTCCGTTTTTCC 57.781 32.000 0.00 0.00 0.00 3.13
368 369 8.106467 TCTGTTTATTTTTCGTTCCGTTTTTC 57.894 30.769 0.00 0.00 0.00 2.29
369 370 8.463456 TTCTGTTTATTTTTCGTTCCGTTTTT 57.537 26.923 0.00 0.00 0.00 1.94
370 371 8.463456 TTTCTGTTTATTTTTCGTTCCGTTTT 57.537 26.923 0.00 0.00 0.00 2.43
371 372 8.463456 TTTTCTGTTTATTTTTCGTTCCGTTT 57.537 26.923 0.00 0.00 0.00 3.60
372 373 8.463456 TTTTTCTGTTTATTTTTCGTTCCGTT 57.537 26.923 0.00 0.00 0.00 4.44
455 456 9.542462 GGTTTTTATTTTCTTCTTGCTACCTTT 57.458 29.630 0.00 0.00 0.00 3.11
456 457 7.865889 CGGTTTTTATTTTCTTCTTGCTACCTT 59.134 33.333 0.00 0.00 0.00 3.50
457 458 7.368059 CGGTTTTTATTTTCTTCTTGCTACCT 58.632 34.615 0.00 0.00 0.00 3.08
458 459 6.584942 CCGGTTTTTATTTTCTTCTTGCTACC 59.415 38.462 0.00 0.00 0.00 3.18
459 460 6.089016 GCCGGTTTTTATTTTCTTCTTGCTAC 59.911 38.462 1.90 0.00 0.00 3.58
460 461 6.015772 AGCCGGTTTTTATTTTCTTCTTGCTA 60.016 34.615 1.90 0.00 0.00 3.49
461 462 4.988540 GCCGGTTTTTATTTTCTTCTTGCT 59.011 37.500 1.90 0.00 0.00 3.91
462 463 4.988540 AGCCGGTTTTTATTTTCTTCTTGC 59.011 37.500 1.90 0.00 0.00 4.01
463 464 6.212955 TGAGCCGGTTTTTATTTTCTTCTTG 58.787 36.000 1.90 0.00 0.00 3.02
464 465 6.399639 TGAGCCGGTTTTTATTTTCTTCTT 57.600 33.333 1.90 0.00 0.00 2.52
465 466 5.048013 CCTGAGCCGGTTTTTATTTTCTTCT 60.048 40.000 1.90 0.00 0.00 2.85
466 467 5.048294 TCCTGAGCCGGTTTTTATTTTCTTC 60.048 40.000 1.90 0.00 0.00 2.87
467 468 4.830600 TCCTGAGCCGGTTTTTATTTTCTT 59.169 37.500 1.90 0.00 0.00 2.52
468 469 4.403734 TCCTGAGCCGGTTTTTATTTTCT 58.596 39.130 1.90 0.00 0.00 2.52
469 470 4.776795 TCCTGAGCCGGTTTTTATTTTC 57.223 40.909 1.90 0.00 0.00 2.29
470 471 4.021456 CCTTCCTGAGCCGGTTTTTATTTT 60.021 41.667 1.90 0.00 0.00 1.82
471 472 3.509967 CCTTCCTGAGCCGGTTTTTATTT 59.490 43.478 1.90 0.00 0.00 1.40
472 473 3.089284 CCTTCCTGAGCCGGTTTTTATT 58.911 45.455 1.90 0.00 0.00 1.40
473 474 2.041216 ACCTTCCTGAGCCGGTTTTTAT 59.959 45.455 1.90 0.00 0.00 1.40
474 475 1.422402 ACCTTCCTGAGCCGGTTTTTA 59.578 47.619 1.90 0.00 0.00 1.52
475 476 0.185175 ACCTTCCTGAGCCGGTTTTT 59.815 50.000 1.90 0.00 0.00 1.94
476 477 0.185175 AACCTTCCTGAGCCGGTTTT 59.815 50.000 1.90 0.00 36.39 2.43
477 478 0.250770 GAACCTTCCTGAGCCGGTTT 60.251 55.000 1.90 0.00 39.69 3.27
478 479 1.375326 GAACCTTCCTGAGCCGGTT 59.625 57.895 1.90 0.00 42.11 4.44
479 480 2.593956 GGAACCTTCCTGAGCCGGT 61.594 63.158 1.90 0.00 44.11 5.28
480 481 2.269241 GGAACCTTCCTGAGCCGG 59.731 66.667 0.00 0.00 44.11 6.13
492 493 4.437958 GGGTTTTCCGGTTTTGGGAACC 62.438 54.545 0.00 6.57 43.00 3.62
493 494 1.202557 GGGTTTTCCGGTTTTGGGAAC 60.203 52.381 0.00 0.00 43.00 3.62
494 495 1.121378 GGGTTTTCCGGTTTTGGGAA 58.879 50.000 0.00 0.00 41.66 3.97
495 496 0.759812 GGGGTTTTCCGGTTTTGGGA 60.760 55.000 0.00 0.00 41.82 4.37
496 497 1.749665 GGGGTTTTCCGGTTTTGGG 59.250 57.895 0.00 0.00 41.82 4.12
497 498 1.364536 CGGGGTTTTCCGGTTTTGG 59.635 57.895 0.00 0.00 45.78 3.28
505 506 0.956633 GTTTCTGGACGGGGTTTTCC 59.043 55.000 0.00 0.00 39.75 3.13
506 507 0.956633 GGTTTCTGGACGGGGTTTTC 59.043 55.000 0.00 0.00 0.00 2.29
507 508 0.554305 AGGTTTCTGGACGGGGTTTT 59.446 50.000 0.00 0.00 0.00 2.43
508 509 0.109913 GAGGTTTCTGGACGGGGTTT 59.890 55.000 0.00 0.00 0.00 3.27
509 510 0.767060 AGAGGTTTCTGGACGGGGTT 60.767 55.000 0.00 0.00 30.72 4.11
510 511 0.115745 TAGAGGTTTCTGGACGGGGT 59.884 55.000 0.00 0.00 34.79 4.95
511 512 0.824759 CTAGAGGTTTCTGGACGGGG 59.175 60.000 0.00 0.00 34.05 5.73
512 513 1.751924 CTCTAGAGGTTTCTGGACGGG 59.248 57.143 12.27 0.00 36.18 5.28
513 514 2.685897 CTCTCTAGAGGTTTCTGGACGG 59.314 54.545 19.67 0.00 36.18 4.79
514 515 3.349022 ACTCTCTAGAGGTTTCTGGACG 58.651 50.000 19.67 0.00 46.13 4.79
515 516 4.158949 GGAACTCTCTAGAGGTTTCTGGAC 59.841 50.000 19.67 9.01 43.22 4.02
516 517 4.345854 GGAACTCTCTAGAGGTTTCTGGA 58.654 47.826 19.67 0.00 43.22 3.86
517 518 3.449377 GGGAACTCTCTAGAGGTTTCTGG 59.551 52.174 19.67 4.63 43.22 3.86
518 519 3.129638 CGGGAACTCTCTAGAGGTTTCTG 59.870 52.174 19.67 19.22 43.22 3.02
519 520 3.010361 TCGGGAACTCTCTAGAGGTTTCT 59.990 47.826 19.67 2.38 43.22 2.52
520 521 3.354467 TCGGGAACTCTCTAGAGGTTTC 58.646 50.000 19.67 18.46 43.22 2.78
521 522 3.453059 TCGGGAACTCTCTAGAGGTTT 57.547 47.619 19.67 12.45 43.22 3.27
522 523 3.453059 TTCGGGAACTCTCTAGAGGTT 57.547 47.619 19.67 19.93 43.22 3.50
523 524 3.090790 GTTTCGGGAACTCTCTAGAGGT 58.909 50.000 19.67 13.10 46.43 3.85
524 525 2.427812 GGTTTCGGGAACTCTCTAGAGG 59.572 54.545 19.67 12.48 46.13 3.69
526 527 3.165087 TGGTTTCGGGAACTCTCTAGA 57.835 47.619 0.00 0.00 38.35 2.43
527 528 3.510360 TCTTGGTTTCGGGAACTCTCTAG 59.490 47.826 0.00 0.00 38.35 2.43
528 529 3.503365 TCTTGGTTTCGGGAACTCTCTA 58.497 45.455 0.00 0.00 38.35 2.43
529 530 2.326428 TCTTGGTTTCGGGAACTCTCT 58.674 47.619 0.00 0.00 38.35 3.10
530 531 2.833631 TCTTGGTTTCGGGAACTCTC 57.166 50.000 0.00 0.00 38.35 3.20
531 532 2.353803 CGATCTTGGTTTCGGGAACTCT 60.354 50.000 0.00 0.00 38.35 3.24
532 533 2.000447 CGATCTTGGTTTCGGGAACTC 59.000 52.381 0.00 0.00 38.35 3.01
533 534 1.944430 GCGATCTTGGTTTCGGGAACT 60.944 52.381 0.00 0.00 38.35 3.01
534 535 0.446616 GCGATCTTGGTTTCGGGAAC 59.553 55.000 0.00 0.00 35.93 3.62
535 536 0.323629 AGCGATCTTGGTTTCGGGAA 59.676 50.000 0.00 0.00 35.93 3.97
536 537 0.391130 CAGCGATCTTGGTTTCGGGA 60.391 55.000 0.00 0.00 35.93 5.14
537 538 0.391130 TCAGCGATCTTGGTTTCGGG 60.391 55.000 0.00 0.00 35.93 5.14
538 539 1.394917 CTTCAGCGATCTTGGTTTCGG 59.605 52.381 0.00 0.00 35.93 4.30
539 540 1.201965 GCTTCAGCGATCTTGGTTTCG 60.202 52.381 0.00 0.00 38.37 3.46
540 541 1.806542 TGCTTCAGCGATCTTGGTTTC 59.193 47.619 0.00 0.00 45.83 2.78
541 542 1.896220 TGCTTCAGCGATCTTGGTTT 58.104 45.000 0.00 0.00 45.83 3.27
542 543 1.896220 TTGCTTCAGCGATCTTGGTT 58.104 45.000 0.00 0.00 45.83 3.67
543 544 2.119801 ATTGCTTCAGCGATCTTGGT 57.880 45.000 0.00 0.00 41.08 3.67
544 545 4.346129 GTTTATTGCTTCAGCGATCTTGG 58.654 43.478 4.71 0.00 43.71 3.61
545 546 4.024438 CGTTTATTGCTTCAGCGATCTTG 58.976 43.478 4.71 0.00 43.71 3.02
546 547 3.063997 CCGTTTATTGCTTCAGCGATCTT 59.936 43.478 4.71 0.00 43.71 2.40
547 548 2.609459 CCGTTTATTGCTTCAGCGATCT 59.391 45.455 4.71 0.00 43.71 2.75
548 549 2.286418 CCCGTTTATTGCTTCAGCGATC 60.286 50.000 4.71 0.00 43.71 3.69
549 550 1.670811 CCCGTTTATTGCTTCAGCGAT 59.329 47.619 6.76 6.76 46.31 4.58
550 551 1.083489 CCCGTTTATTGCTTCAGCGA 58.917 50.000 0.00 0.00 45.83 4.93
551 552 0.523335 GCCCGTTTATTGCTTCAGCG 60.523 55.000 0.00 0.00 45.83 5.18
552 553 0.179137 GGCCCGTTTATTGCTTCAGC 60.179 55.000 0.00 0.00 42.50 4.26
553 554 1.133025 CTGGCCCGTTTATTGCTTCAG 59.867 52.381 0.00 0.00 0.00 3.02
554 555 1.173043 CTGGCCCGTTTATTGCTTCA 58.827 50.000 0.00 0.00 0.00 3.02
555 556 0.179137 GCTGGCCCGTTTATTGCTTC 60.179 55.000 0.00 0.00 0.00 3.86
556 557 1.604147 GGCTGGCCCGTTTATTGCTT 61.604 55.000 0.00 0.00 0.00 3.91
557 558 2.052104 GGCTGGCCCGTTTATTGCT 61.052 57.895 0.00 0.00 0.00 3.91
558 559 2.494445 GGCTGGCCCGTTTATTGC 59.506 61.111 0.00 0.00 0.00 3.56
568 569 4.785453 CCTCGTCTTGGGCTGGCC 62.785 72.222 14.23 14.23 0.00 5.36
569 570 4.785453 CCCTCGTCTTGGGCTGGC 62.785 72.222 0.00 0.00 37.99 4.85
570 571 2.317149 GATCCCTCGTCTTGGGCTGG 62.317 65.000 0.00 0.00 44.23 4.85
571 572 1.144936 GATCCCTCGTCTTGGGCTG 59.855 63.158 0.00 0.00 44.23 4.85
572 573 2.427245 CGATCCCTCGTCTTGGGCT 61.427 63.158 0.00 0.00 44.23 5.19
573 574 2.107141 CGATCCCTCGTCTTGGGC 59.893 66.667 0.00 0.00 44.23 5.36
574 575 1.107538 TAGCGATCCCTCGTCTTGGG 61.108 60.000 0.00 0.00 46.71 4.12
575 576 0.312416 CTAGCGATCCCTCGTCTTGG 59.688 60.000 0.00 0.00 46.71 3.61
576 577 0.312416 CCTAGCGATCCCTCGTCTTG 59.688 60.000 0.00 0.00 46.71 3.02
577 578 0.106619 ACCTAGCGATCCCTCGTCTT 60.107 55.000 0.00 0.00 46.71 3.01
578 579 0.535553 GACCTAGCGATCCCTCGTCT 60.536 60.000 0.00 0.00 46.71 4.18
579 580 0.535553 AGACCTAGCGATCCCTCGTC 60.536 60.000 0.00 1.11 46.71 4.20
580 581 0.535553 GAGACCTAGCGATCCCTCGT 60.536 60.000 0.00 0.00 46.71 4.18
582 583 2.648593 GGAGACCTAGCGATCCCTC 58.351 63.158 0.00 0.00 0.00 4.30
583 584 4.934316 GGAGACCTAGCGATCCCT 57.066 61.111 0.00 0.00 0.00 4.20
595 596 2.027625 CCGTTTCGCACAGGGAGAC 61.028 63.158 0.00 0.00 0.00 3.36
596 597 2.342279 CCGTTTCGCACAGGGAGA 59.658 61.111 0.00 0.00 0.00 3.71
597 598 3.423154 GCCGTTTCGCACAGGGAG 61.423 66.667 0.00 0.00 0.00 4.30
600 601 4.072088 GTCGCCGTTTCGCACAGG 62.072 66.667 0.00 0.00 0.00 4.00
601 602 2.170260 AATGTCGCCGTTTCGCACAG 62.170 55.000 0.00 0.00 0.00 3.66
602 603 1.777030 AAATGTCGCCGTTTCGCACA 61.777 50.000 0.00 0.00 0.00 4.57
603 604 1.058057 GAAATGTCGCCGTTTCGCAC 61.058 55.000 0.00 0.00 36.98 5.34
604 605 1.205568 GAAATGTCGCCGTTTCGCA 59.794 52.632 0.00 0.00 36.98 5.10
605 606 4.036544 GAAATGTCGCCGTTTCGC 57.963 55.556 0.00 0.00 36.98 4.70
607 608 0.515717 CGTCGAAATGTCGCCGTTTC 60.516 55.000 0.00 1.06 43.20 2.78
608 609 1.489824 CGTCGAAATGTCGCCGTTT 59.510 52.632 0.00 0.00 43.20 3.60
609 610 3.152703 CGTCGAAATGTCGCCGTT 58.847 55.556 0.00 0.00 43.20 4.44
615 616 1.802839 GCTCATTGCGTCGAAATGTC 58.197 50.000 22.46 13.42 36.58 3.06
616 617 3.975992 GCTCATTGCGTCGAAATGT 57.024 47.368 22.46 0.00 36.58 2.71
626 627 1.429148 CCCTAACGGACGCTCATTGC 61.429 60.000 0.00 0.00 38.57 3.56
627 628 0.174845 TCCCTAACGGACGCTCATTG 59.825 55.000 0.00 0.00 34.86 2.82
628 629 0.899720 TTCCCTAACGGACGCTCATT 59.100 50.000 0.00 0.00 41.83 2.57
629 630 1.120530 ATTCCCTAACGGACGCTCAT 58.879 50.000 0.00 0.00 41.83 2.90
630 631 0.899720 AATTCCCTAACGGACGCTCA 59.100 50.000 0.00 0.00 41.83 4.26
631 632 1.568606 GAATTCCCTAACGGACGCTC 58.431 55.000 0.00 0.00 41.83 5.03
632 633 0.177373 GGAATTCCCTAACGGACGCT 59.823 55.000 14.03 0.00 41.83 5.07
633 634 2.686602 GGAATTCCCTAACGGACGC 58.313 57.895 14.03 0.00 41.83 5.19
644 645 2.023015 AGGGGGAGAAAATGGGAATTCC 60.023 50.000 16.74 16.74 0.00 3.01
645 646 3.033909 CAGGGGGAGAAAATGGGAATTC 58.966 50.000 0.00 0.00 0.00 2.17
646 647 2.293118 CCAGGGGGAGAAAATGGGAATT 60.293 50.000 0.00 0.00 35.59 2.17
647 648 1.291939 CCAGGGGGAGAAAATGGGAAT 59.708 52.381 0.00 0.00 35.59 3.01
648 649 0.709992 CCAGGGGGAGAAAATGGGAA 59.290 55.000 0.00 0.00 35.59 3.97
649 650 0.178816 TCCAGGGGGAGAAAATGGGA 60.179 55.000 0.00 0.00 38.64 4.37
650 651 0.033109 GTCCAGGGGGAGAAAATGGG 60.033 60.000 0.00 0.00 46.12 4.00
651 652 0.394352 CGTCCAGGGGGAGAAAATGG 60.394 60.000 0.00 0.00 46.12 3.16
652 653 0.394352 CCGTCCAGGGGGAGAAAATG 60.394 60.000 0.00 0.00 46.12 2.32
653 654 0.845102 ACCGTCCAGGGGGAGAAAAT 60.845 55.000 4.59 0.00 46.12 1.82
654 655 1.063654 AACCGTCCAGGGGGAGAAAA 61.064 55.000 4.59 0.00 46.12 2.29
655 656 0.178897 TAACCGTCCAGGGGGAGAAA 60.179 55.000 4.59 0.00 46.12 2.52
656 657 0.178897 TTAACCGTCCAGGGGGAGAA 60.179 55.000 4.59 0.00 46.12 2.87
657 658 0.616679 CTTAACCGTCCAGGGGGAGA 60.617 60.000 4.59 0.00 46.12 3.71
658 659 1.905512 CTTAACCGTCCAGGGGGAG 59.094 63.158 4.59 0.00 46.12 4.30
659 660 2.295602 GCTTAACCGTCCAGGGGGA 61.296 63.158 4.59 0.00 46.96 4.81
660 661 2.271173 GCTTAACCGTCCAGGGGG 59.729 66.667 0.00 0.00 46.96 5.40
661 662 1.078426 CAGCTTAACCGTCCAGGGG 60.078 63.158 0.00 0.00 46.96 4.79
662 663 0.108138 CTCAGCTTAACCGTCCAGGG 60.108 60.000 0.00 0.00 46.96 4.45
664 665 2.731341 CGTACTCAGCTTAACCGTCCAG 60.731 54.545 0.00 0.00 0.00 3.86
665 666 1.200716 CGTACTCAGCTTAACCGTCCA 59.799 52.381 0.00 0.00 0.00 4.02
666 667 1.905449 CGTACTCAGCTTAACCGTCC 58.095 55.000 0.00 0.00 0.00 4.79
667 668 1.135460 AGCGTACTCAGCTTAACCGTC 60.135 52.381 0.00 0.00 43.24 4.79
668 669 0.886563 AGCGTACTCAGCTTAACCGT 59.113 50.000 0.00 0.00 43.24 4.83
669 670 1.546834 GAGCGTACTCAGCTTAACCG 58.453 55.000 0.00 0.00 46.13 4.44
670 671 1.471153 GGGAGCGTACTCAGCTTAACC 60.471 57.143 0.00 0.00 46.13 2.85
671 672 1.477295 AGGGAGCGTACTCAGCTTAAC 59.523 52.381 0.00 0.00 46.13 2.01
672 673 1.749634 GAGGGAGCGTACTCAGCTTAA 59.250 52.381 0.00 0.00 46.13 1.85
673 674 1.340697 TGAGGGAGCGTACTCAGCTTA 60.341 52.381 3.64 0.00 46.13 3.09
674 675 0.612174 TGAGGGAGCGTACTCAGCTT 60.612 55.000 3.64 0.00 46.13 3.74
676 677 0.246635 TTTGAGGGAGCGTACTCAGC 59.753 55.000 7.21 0.00 45.42 4.26
677 678 2.743636 TTTTGAGGGAGCGTACTCAG 57.256 50.000 7.21 0.00 45.42 3.35
775 777 3.361414 GTCGTCGTGAGAGCCTATAAAC 58.639 50.000 0.00 0.00 43.49 2.01
817 819 9.799106 GAGGATTTTCAGATCTGGGATTTAATA 57.201 33.333 22.42 4.29 0.00 0.98
818 820 8.509441 AGAGGATTTTCAGATCTGGGATTTAAT 58.491 33.333 22.42 12.13 0.00 1.40
819 821 7.876371 AGAGGATTTTCAGATCTGGGATTTAA 58.124 34.615 22.42 5.55 0.00 1.52
864 866 1.640428 TGTTGATTGAGATCGCCGAC 58.360 50.000 0.00 0.00 34.91 4.79
869 871 3.363178 TCGTCGATGTTGATTGAGATCG 58.637 45.455 4.21 0.00 42.25 3.69
870 872 4.562789 TGTTCGTCGATGTTGATTGAGATC 59.437 41.667 4.21 0.00 0.00 2.75
871 873 4.494484 TGTTCGTCGATGTTGATTGAGAT 58.506 39.130 4.21 0.00 0.00 2.75
872 874 3.908213 TGTTCGTCGATGTTGATTGAGA 58.092 40.909 4.21 0.00 0.00 3.27
873 875 4.645667 TTGTTCGTCGATGTTGATTGAG 57.354 40.909 4.21 0.00 0.00 3.02
874 876 5.408299 AGAATTGTTCGTCGATGTTGATTGA 59.592 36.000 4.21 0.00 34.02 2.57
875 877 5.621422 AGAATTGTTCGTCGATGTTGATTG 58.379 37.500 4.21 0.00 34.02 2.67
876 878 5.408299 TGAGAATTGTTCGTCGATGTTGATT 59.592 36.000 4.21 1.88 34.02 2.57
877 879 4.929211 TGAGAATTGTTCGTCGATGTTGAT 59.071 37.500 4.21 0.00 34.02 2.57
878 880 4.303282 TGAGAATTGTTCGTCGATGTTGA 58.697 39.130 4.21 0.00 34.02 3.18
879 881 4.645667 TGAGAATTGTTCGTCGATGTTG 57.354 40.909 4.21 0.00 34.02 3.33
880 882 4.436050 GCATGAGAATTGTTCGTCGATGTT 60.436 41.667 4.21 0.00 34.02 2.71
881 883 3.062639 GCATGAGAATTGTTCGTCGATGT 59.937 43.478 4.21 0.00 34.02 3.06
888 890 5.064325 TGAGATCAAGCATGAGAATTGTTCG 59.936 40.000 0.00 0.00 39.39 3.95
895 897 3.516700 TCAGGTGAGATCAAGCATGAGAA 59.483 43.478 0.00 0.00 39.39 2.87
896 898 3.102204 TCAGGTGAGATCAAGCATGAGA 58.898 45.455 0.00 0.00 39.39 3.27
900 907 2.224233 CGGATCAGGTGAGATCAAGCAT 60.224 50.000 6.32 0.00 44.89 3.79
928 935 1.956629 GAGATCGCCGAGGGTTTCCA 61.957 60.000 0.00 0.00 34.83 3.53
1232 1250 0.036732 GCCCAAGATATCATCCGGCA 59.963 55.000 14.68 0.00 36.80 5.69
1404 1422 2.042843 TCCCTCTTCCTCTCCGGC 60.043 66.667 0.00 0.00 0.00 6.13
1458 1476 3.195610 TCTCATAGTGCAATGACTCGGTT 59.804 43.478 0.00 0.00 32.51 4.44
1468 1486 3.118992 ACGAGCAAGATCTCATAGTGCAA 60.119 43.478 16.54 0.00 37.68 4.08
1482 1500 1.901650 GCGTTTGAGGGACGAGCAAG 61.902 60.000 0.33 0.00 42.82 4.01
1506 1524 4.421554 TGGCCCCTCTCCTCTGGG 62.422 72.222 0.00 0.00 42.98 4.45
1507 1525 2.767496 CTGGCCCCTCTCCTCTGG 60.767 72.222 0.00 0.00 0.00 3.86
1660 1678 1.725641 CTGCAGCTATTTGACGTCCA 58.274 50.000 14.12 0.00 0.00 4.02
1833 1854 6.692849 ATAAATATGACAGGCTCATGGAGA 57.307 37.500 0.00 0.00 40.12 3.71
2023 2077 7.099120 ACATTGGTGGAATTGCTTAATCTTTC 58.901 34.615 0.00 0.00 0.00 2.62
2070 2124 7.230849 TGACAAGGATATTCTGCAAAACATT 57.769 32.000 0.00 0.00 0.00 2.71
2355 2409 6.312399 TGTTGACCATAGTGTTCAACATTC 57.688 37.500 15.91 0.00 43.53 2.67
3059 3114 9.546428 GGGATATTATGGAAAGAAACAAAATGG 57.454 33.333 0.00 0.00 0.00 3.16
3224 3279 3.243771 CGCTCTTAATCGAAGTGGGGTAT 60.244 47.826 0.00 0.00 37.73 2.73
3245 3300 5.611796 ACAGGTATAATTATGCATGCACG 57.388 39.130 25.37 6.06 34.25 5.34
3293 3352 6.876257 GGCCAACATATTTACCAAAATGACAA 59.124 34.615 0.00 0.00 36.02 3.18
3383 3442 9.774742 GATATCTCATTACAAACAAAGTGGAAC 57.225 33.333 0.00 0.00 0.00 3.62
3385 3444 9.739276 AAGATATCTCATTACAAACAAAGTGGA 57.261 29.630 5.51 0.00 0.00 4.02
3545 3610 3.654806 ACCTTGCCAGCTCCTTATGATAT 59.345 43.478 0.00 0.00 0.00 1.63
3630 3699 2.433239 GCCCACCTCGATCTTTAGGTAA 59.567 50.000 10.03 0.00 44.43 2.85
3671 3740 1.026182 TCAGGGCGACATTCATGTGC 61.026 55.000 0.00 2.00 41.95 4.57
3673 3742 1.065199 ACATCAGGGCGACATTCATGT 60.065 47.619 0.00 0.00 45.16 3.21
3697 3766 1.091771 CAAGATCCGCCAGACGCAAT 61.092 55.000 0.00 0.00 41.76 3.56
3701 3770 3.257561 CGCAAGATCCGCCAGACG 61.258 66.667 0.00 0.00 40.74 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.