Multiple sequence alignment - TraesCS1A01G277700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G277700 chr1A 100.000 6354 0 0 1 6354 473036634 473042987 0.000000e+00 11734.0
1 TraesCS1A01G277700 chr1A 93.890 1784 79 16 2124 3886 70692448 70694222 0.000000e+00 2663.0
2 TraesCS1A01G277700 chr1A 89.374 1788 170 19 2121 3896 533738740 533740519 0.000000e+00 2231.0
3 TraesCS1A01G277700 chr1A 86.658 772 98 5 1 769 521875567 521876336 0.000000e+00 850.0
4 TraesCS1A01G277700 chr1A 89.535 86 7 1 5491 5574 560251594 560251679 2.420000e-19 108.0
5 TraesCS1A01G277700 chr5A 94.949 1762 78 7 2128 3888 567886860 567888611 0.000000e+00 2750.0
6 TraesCS1A01G277700 chr5A 85.227 88 9 3 5492 5576 622203936 622203850 3.160000e-13 87.9
7 TraesCS1A01G277700 chr7A 94.895 1763 76 8 2127 3887 647310941 647309191 0.000000e+00 2745.0
8 TraesCS1A01G277700 chr7A 94.457 1768 92 5 2121 3886 476297248 476299011 0.000000e+00 2717.0
9 TraesCS1A01G277700 chr7A 94.498 1763 79 9 2127 3887 609635422 609633676 0.000000e+00 2702.0
10 TraesCS1A01G277700 chr7A 93.850 1805 81 15 2119 3906 642156402 642154611 0.000000e+00 2691.0
11 TraesCS1A01G277700 chr7A 94.976 1453 69 3 2435 3886 33356656 33358105 0.000000e+00 2276.0
12 TraesCS1A01G277700 chr4A 94.662 1761 81 9 2128 3887 236003877 236002129 0.000000e+00 2719.0
13 TraesCS1A01G277700 chr3A 93.931 1796 82 11 2120 3897 499237955 499239741 0.000000e+00 2687.0
14 TraesCS1A01G277700 chr3A 89.744 156 14 2 6199 6354 376751347 376751194 1.400000e-46 198.0
15 TraesCS1A01G277700 chr3A 87.838 74 9 0 5501 5574 410084520 410084447 3.160000e-13 87.9
16 TraesCS1A01G277700 chr3A 87.838 74 9 0 5501 5574 410090184 410090111 3.160000e-13 87.9
17 TraesCS1A01G277700 chr3A 87.838 74 9 0 5501 5574 410096471 410096398 3.160000e-13 87.9
18 TraesCS1A01G277700 chr7D 92.897 1774 104 19 2128 3887 558926987 558928752 0.000000e+00 2558.0
19 TraesCS1A01G277700 chr7D 86.658 772 93 7 1 769 490898583 490897819 0.000000e+00 846.0
20 TraesCS1A01G277700 chr7D 88.462 156 17 1 6199 6354 364967480 364967634 3.020000e-43 187.0
21 TraesCS1A01G277700 chr1D 95.095 1631 58 7 3880 5495 373431183 373432806 0.000000e+00 2549.0
22 TraesCS1A01G277700 chr1D 90.620 1322 56 29 826 2127 373429924 373431197 0.000000e+00 1692.0
23 TraesCS1A01G277700 chr1D 93.482 629 32 4 5584 6205 373433734 373434360 0.000000e+00 926.0
24 TraesCS1A01G277700 chr1D 89.466 731 71 6 1 726 426866878 426867607 0.000000e+00 918.0
25 TraesCS1A01G277700 chr1D 87.067 750 85 8 1 745 438999487 439000229 0.000000e+00 837.0
26 TraesCS1A01G277700 chr1D 92.073 328 16 5 5584 5904 373432866 373433190 2.700000e-123 453.0
27 TraesCS1A01G277700 chr1D 90.411 146 13 1 6203 6348 137880498 137880642 2.340000e-44 191.0
28 TraesCS1A01G277700 chr1D 89.933 149 14 1 6206 6354 379658115 379657968 2.340000e-44 191.0
29 TraesCS1A01G277700 chr1B 94.468 1627 63 9 3889 5495 498706999 498708618 0.000000e+00 2481.0
30 TraesCS1A01G277700 chr1B 89.940 1332 62 33 826 2128 498705718 498707006 0.000000e+00 1652.0
31 TraesCS1A01G277700 chr1B 94.299 421 19 2 5939 6354 498728655 498729075 1.930000e-179 640.0
32 TraesCS1A01G277700 chr1B 93.151 365 19 4 5584 5943 498708678 498709041 1.210000e-146 531.0
33 TraesCS1A01G277700 chr1B 88.636 88 8 1 5492 5577 543504309 543504396 8.710000e-19 106.0
34 TraesCS1A01G277700 chr3D 87.183 749 91 5 1 745 527142058 527141311 0.000000e+00 846.0
35 TraesCS1A01G277700 chr3D 90.604 149 13 1 6206 6354 298456608 298456461 5.030000e-46 196.0
36 TraesCS1A01G277700 chr3D 93.506 77 5 0 5498 5574 417424008 417424084 1.450000e-21 115.0
37 TraesCS1A01G277700 chr3B 86.898 748 87 6 1 745 3627358 3628097 0.000000e+00 828.0
38 TraesCS1A01G277700 chr4D 85.824 783 96 11 1 775 465023360 465024135 0.000000e+00 817.0
39 TraesCS1A01G277700 chrUn 86.622 740 88 5 1 737 94263548 94264279 0.000000e+00 808.0
40 TraesCS1A01G277700 chr6A 85.401 774 100 8 1 769 573824101 573823336 0.000000e+00 791.0
41 TraesCS1A01G277700 chr6B 86.465 495 40 11 1003 1496 494395577 494395109 9.440000e-143 518.0
42 TraesCS1A01G277700 chr2A 91.096 146 12 1 6203 6348 144661029 144661173 5.030000e-46 196.0
43 TraesCS1A01G277700 chr2D 88.125 160 17 2 6195 6354 261229259 261229102 8.410000e-44 189.0
44 TraesCS1A01G277700 chr2D 87.500 160 18 2 6195 6354 261155442 261155285 3.910000e-42 183.0
45 TraesCS1A01G277700 chr5D 86.517 89 8 4 5490 5575 264634959 264635046 1.890000e-15 95.3
46 TraesCS1A01G277700 chr5B 85.882 85 10 1 5492 5574 499376966 499376882 8.770000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G277700 chr1A 473036634 473042987 6353 False 11734.000000 11734 100.000000 1 6354 1 chr1A.!!$F2 6353
1 TraesCS1A01G277700 chr1A 70692448 70694222 1774 False 2663.000000 2663 93.890000 2124 3886 1 chr1A.!!$F1 1762
2 TraesCS1A01G277700 chr1A 533738740 533740519 1779 False 2231.000000 2231 89.374000 2121 3896 1 chr1A.!!$F4 1775
3 TraesCS1A01G277700 chr1A 521875567 521876336 769 False 850.000000 850 86.658000 1 769 1 chr1A.!!$F3 768
4 TraesCS1A01G277700 chr5A 567886860 567888611 1751 False 2750.000000 2750 94.949000 2128 3888 1 chr5A.!!$F1 1760
5 TraesCS1A01G277700 chr7A 647309191 647310941 1750 True 2745.000000 2745 94.895000 2127 3887 1 chr7A.!!$R3 1760
6 TraesCS1A01G277700 chr7A 476297248 476299011 1763 False 2717.000000 2717 94.457000 2121 3886 1 chr7A.!!$F2 1765
7 TraesCS1A01G277700 chr7A 609633676 609635422 1746 True 2702.000000 2702 94.498000 2127 3887 1 chr7A.!!$R1 1760
8 TraesCS1A01G277700 chr7A 642154611 642156402 1791 True 2691.000000 2691 93.850000 2119 3906 1 chr7A.!!$R2 1787
9 TraesCS1A01G277700 chr7A 33356656 33358105 1449 False 2276.000000 2276 94.976000 2435 3886 1 chr7A.!!$F1 1451
10 TraesCS1A01G277700 chr4A 236002129 236003877 1748 True 2719.000000 2719 94.662000 2128 3887 1 chr4A.!!$R1 1759
11 TraesCS1A01G277700 chr3A 499237955 499239741 1786 False 2687.000000 2687 93.931000 2120 3897 1 chr3A.!!$F1 1777
12 TraesCS1A01G277700 chr7D 558926987 558928752 1765 False 2558.000000 2558 92.897000 2128 3887 1 chr7D.!!$F2 1759
13 TraesCS1A01G277700 chr7D 490897819 490898583 764 True 846.000000 846 86.658000 1 769 1 chr7D.!!$R1 768
14 TraesCS1A01G277700 chr1D 373429924 373434360 4436 False 1405.000000 2549 92.817500 826 6205 4 chr1D.!!$F4 5379
15 TraesCS1A01G277700 chr1D 426866878 426867607 729 False 918.000000 918 89.466000 1 726 1 chr1D.!!$F2 725
16 TraesCS1A01G277700 chr1D 438999487 439000229 742 False 837.000000 837 87.067000 1 745 1 chr1D.!!$F3 744
17 TraesCS1A01G277700 chr1B 498705718 498709041 3323 False 1554.666667 2481 92.519667 826 5943 3 chr1B.!!$F3 5117
18 TraesCS1A01G277700 chr3D 527141311 527142058 747 True 846.000000 846 87.183000 1 745 1 chr3D.!!$R2 744
19 TraesCS1A01G277700 chr3B 3627358 3628097 739 False 828.000000 828 86.898000 1 745 1 chr3B.!!$F1 744
20 TraesCS1A01G277700 chr4D 465023360 465024135 775 False 817.000000 817 85.824000 1 775 1 chr4D.!!$F1 774
21 TraesCS1A01G277700 chrUn 94263548 94264279 731 False 808.000000 808 86.622000 1 737 1 chrUn.!!$F1 736
22 TraesCS1A01G277700 chr6A 573823336 573824101 765 True 791.000000 791 85.401000 1 769 1 chr6A.!!$R1 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
521 537 0.038892 AAACTCCTACGAAAGCGCGA 60.039 50.0 12.10 0.0 42.48 5.87 F
954 987 0.107643 GCTCCTCCCATAGCCAGAAC 59.892 60.0 0.00 0.0 32.40 3.01 F
2463 2539 0.036765 TCCGCCACGCTTCAATAACT 60.037 50.0 0.00 0.0 0.00 2.24 F
3726 3861 0.114168 ACAATGGGCCCTTGCTACAA 59.886 50.0 25.70 0.0 37.74 2.41 F
4458 4615 0.244721 GGCTTGTCCACAAATGCTCC 59.755 55.0 4.29 0.0 35.15 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1811 0.512952 GTCTGCAACCTGTTACAGCG 59.487 55.0 6.88 3.2 34.71 5.18 R
2659 2740 0.621082 TCATTGTGGCCGGATGGTTA 59.379 50.0 5.05 0.0 37.67 2.85 R
3827 3962 0.951558 GGTCAGTTTGGTGCACGAAT 59.048 50.0 15.36 0.0 0.00 3.34 R
4865 5022 0.391661 CCTCCCACGTCATCACTTGG 60.392 60.0 0.00 0.0 40.89 3.61 R
5741 5904 0.803768 CAACGGAGACATGAGAGCGG 60.804 60.0 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 5.163933 GGTGTTCGCAAAGTAATCGACATAA 60.164 40.000 0.00 0.00 31.48 1.90
114 123 2.419739 GGGCGTGACCTCTCTCTCC 61.420 68.421 0.00 0.00 39.10 3.71
120 131 0.539669 TGACCTCTCTCTCCGTTGCA 60.540 55.000 0.00 0.00 0.00 4.08
170 182 1.265454 CCCCTGTACCGAGGAAGCTT 61.265 60.000 0.00 0.00 34.69 3.74
417 430 0.458716 GCACTCGACAGAAGCTACCC 60.459 60.000 0.00 0.00 0.00 3.69
452 468 2.571216 CCGGCGATCGTATCCCCTT 61.571 63.158 17.81 0.00 37.11 3.95
498 514 0.895530 AAATCTCCTCCAAGCGACGA 59.104 50.000 0.00 0.00 0.00 4.20
521 537 0.038892 AAACTCCTACGAAAGCGCGA 60.039 50.000 12.10 0.00 42.48 5.87
548 564 1.311859 AACGGCCATATCGAGACGTA 58.688 50.000 2.24 0.00 33.85 3.57
564 580 2.170166 ACGTAGTTTGGTATGGACGGA 58.830 47.619 0.00 0.00 37.78 4.69
565 581 2.762327 ACGTAGTTTGGTATGGACGGAT 59.238 45.455 0.00 0.00 37.78 4.18
569 585 2.704065 AGTTTGGTATGGACGGATAGGG 59.296 50.000 0.00 0.00 0.00 3.53
570 586 2.701951 GTTTGGTATGGACGGATAGGGA 59.298 50.000 0.00 0.00 0.00 4.20
594 616 1.915769 GGGTGAGCTGTGAGGAGGT 60.916 63.158 0.00 0.00 0.00 3.85
644 666 1.995626 GGTAGGGCAGGGAAGAGCA 60.996 63.158 0.00 0.00 0.00 4.26
658 680 3.240134 GAGCAGGTGGAGGCGTTGA 62.240 63.158 0.00 0.00 34.54 3.18
685 710 2.506065 GGACTGCTAGTGTCCCGAT 58.494 57.895 19.74 0.00 46.01 4.18
688 713 2.573369 GACTGCTAGTGTCCCGATAGA 58.427 52.381 6.72 0.00 39.76 1.98
707 733 1.450211 CGGGCCACGGGAGAATAAT 59.550 57.895 4.39 0.00 39.42 1.28
717 743 1.014352 GGAGAATAATGGCGTGCGTT 58.986 50.000 0.00 0.00 0.00 4.84
745 771 1.671328 TCCACGCGATGTTTGTTTCAA 59.329 42.857 15.93 0.00 0.00 2.69
747 773 3.049206 CCACGCGATGTTTGTTTCAATT 58.951 40.909 15.93 0.00 0.00 2.32
748 774 3.489047 CCACGCGATGTTTGTTTCAATTT 59.511 39.130 15.93 0.00 0.00 1.82
759 785 6.369065 TGTTTGTTTCAATTTAAACTTGGCGT 59.631 30.769 14.56 0.00 39.57 5.68
773 799 3.921677 CTTGGCGTAAGTTTAGGTCAGA 58.078 45.455 0.12 0.00 35.03 3.27
776 802 4.901868 TGGCGTAAGTTTAGGTCAGAAAT 58.098 39.130 0.00 0.00 41.68 2.17
777 803 6.040209 TGGCGTAAGTTTAGGTCAGAAATA 57.960 37.500 0.00 0.00 41.68 1.40
778 804 6.465948 TGGCGTAAGTTTAGGTCAGAAATAA 58.534 36.000 0.00 0.00 41.68 1.40
779 805 6.935771 TGGCGTAAGTTTAGGTCAGAAATAAA 59.064 34.615 0.00 0.00 41.68 1.40
780 806 7.608761 TGGCGTAAGTTTAGGTCAGAAATAAAT 59.391 33.333 0.00 0.00 41.68 1.40
781 807 8.456471 GGCGTAAGTTTAGGTCAGAAATAAATT 58.544 33.333 0.00 0.00 41.68 1.82
800 826 9.535878 AATAAATTAAAAAGGAAAACAGACGCA 57.464 25.926 0.00 0.00 0.00 5.24
801 827 6.822073 AATTAAAAAGGAAAACAGACGCAC 57.178 33.333 0.00 0.00 0.00 5.34
802 828 2.863401 AAAAGGAAAACAGACGCACC 57.137 45.000 0.00 0.00 0.00 5.01
803 829 0.661020 AAAGGAAAACAGACGCACCG 59.339 50.000 0.00 0.00 0.00 4.94
804 830 1.164041 AAGGAAAACAGACGCACCGG 61.164 55.000 0.00 0.00 0.00 5.28
805 831 1.595929 GGAAAACAGACGCACCGGA 60.596 57.895 9.46 0.00 0.00 5.14
806 832 1.568025 GAAAACAGACGCACCGGAC 59.432 57.895 9.46 0.00 0.00 4.79
807 833 2.154427 GAAAACAGACGCACCGGACG 62.154 60.000 9.46 14.90 0.00 4.79
808 834 4.657824 AACAGACGCACCGGACGG 62.658 66.667 22.01 9.56 42.03 4.79
836 862 2.126228 CGGAGTTGGCTAACGCGA 60.126 61.111 15.93 0.00 41.71 5.87
864 895 1.365999 GGCGGGGGACAAACAAAAG 59.634 57.895 0.00 0.00 0.00 2.27
870 901 3.369576 CGGGGGACAAACAAAAGGAAAAA 60.370 43.478 0.00 0.00 0.00 1.94
884 915 3.276846 AAAAAGAGCGCGCACCGT 61.277 55.556 35.10 19.50 39.71 4.83
908 939 3.300765 GTGACCCCCGTCGTGACT 61.301 66.667 0.00 0.00 42.37 3.41
918 949 1.409412 CGTCGTGACTGACTTCCTTG 58.591 55.000 0.00 0.00 36.71 3.61
951 984 1.834378 TCGCTCCTCCCATAGCCAG 60.834 63.158 0.00 0.00 35.22 4.85
953 986 1.402896 CGCTCCTCCCATAGCCAGAA 61.403 60.000 0.00 0.00 35.22 3.02
954 987 0.107643 GCTCCTCCCATAGCCAGAAC 59.892 60.000 0.00 0.00 32.40 3.01
968 1001 1.281867 CCAGAACACAGAAGGGCCATA 59.718 52.381 6.18 0.00 0.00 2.74
1123 1162 4.011517 CCAACCGGGTACGTGCCT 62.012 66.667 22.50 0.00 38.78 4.75
1124 1163 2.740826 CAACCGGGTACGTGCCTG 60.741 66.667 23.38 23.38 38.78 4.85
1138 1177 3.869272 CCTGCGCGCTCACCATTC 61.869 66.667 33.29 0.00 0.00 2.67
1139 1178 3.869272 CTGCGCGCTCACCATTCC 61.869 66.667 33.29 0.00 0.00 3.01
1142 1181 3.499737 CGCGCTCACCATTCCCAC 61.500 66.667 5.56 0.00 0.00 4.61
1143 1182 3.134127 GCGCTCACCATTCCCACC 61.134 66.667 0.00 0.00 0.00 4.61
1144 1183 2.819595 CGCTCACCATTCCCACCG 60.820 66.667 0.00 0.00 0.00 4.94
1145 1184 3.134127 GCTCACCATTCCCACCGC 61.134 66.667 0.00 0.00 0.00 5.68
1146 1185 2.671070 CTCACCATTCCCACCGCT 59.329 61.111 0.00 0.00 0.00 5.52
1147 1186 1.450312 CTCACCATTCCCACCGCTC 60.450 63.158 0.00 0.00 0.00 5.03
1148 1187 1.903877 CTCACCATTCCCACCGCTCT 61.904 60.000 0.00 0.00 0.00 4.09
1149 1188 1.450312 CACCATTCCCACCGCTCTC 60.450 63.158 0.00 0.00 0.00 3.20
1200 1249 3.559657 GACTGACTGCTGTCGCCGT 62.560 63.158 17.59 14.06 45.70 5.68
1308 1357 3.068691 TCGACTCCCAGGGCTTCG 61.069 66.667 18.45 18.45 0.00 3.79
1309 1358 4.148825 CGACTCCCAGGGCTTCGG 62.149 72.222 17.25 3.25 0.00 4.30
1310 1359 4.475135 GACTCCCAGGGCTTCGGC 62.475 72.222 0.00 0.00 40.88 5.54
1655 1719 3.625897 CCGAGGTCCAGGCACACA 61.626 66.667 0.00 0.00 0.00 3.72
1656 1720 2.425592 CGAGGTCCAGGCACACAA 59.574 61.111 0.00 0.00 0.00 3.33
1657 1721 1.961277 CGAGGTCCAGGCACACAAC 60.961 63.158 0.00 0.00 0.00 3.32
1658 1722 1.961277 GAGGTCCAGGCACACAACG 60.961 63.158 0.00 0.00 0.00 4.10
1659 1723 2.110213 GGTCCAGGCACACAACGA 59.890 61.111 0.00 0.00 0.00 3.85
1660 1724 2.251642 GGTCCAGGCACACAACGAC 61.252 63.158 0.00 0.00 0.00 4.34
1661 1725 1.522806 GTCCAGGCACACAACGACA 60.523 57.895 0.00 0.00 0.00 4.35
1737 1801 4.402056 TGGCCTATCTAACTTGCTGTAC 57.598 45.455 3.32 0.00 0.00 2.90
1749 1813 4.421948 ACTTGCTGTACTTACACTATCGC 58.578 43.478 0.00 0.00 31.93 4.58
1859 1923 4.035909 CGATGAGCAACATGATTTGGATGA 59.964 41.667 0.00 0.00 39.56 2.92
1887 1951 2.434359 CAAGACGGGCGAGGTTCC 60.434 66.667 0.00 0.00 0.00 3.62
2017 2081 4.019174 GGAGAAGAAATTCAATGGGAGCA 58.981 43.478 0.00 0.00 0.00 4.26
2065 2129 9.478019 CACATTTACTTTCATTCGAGTATCAAC 57.522 33.333 0.00 0.00 33.17 3.18
2076 2140 6.636666 TTCGAGTATCAACCAACGAATTAC 57.363 37.500 0.00 0.00 34.10 1.89
2077 2141 5.712004 TCGAGTATCAACCAACGAATTACA 58.288 37.500 0.00 0.00 33.17 2.41
2078 2142 5.803461 TCGAGTATCAACCAACGAATTACAG 59.197 40.000 0.00 0.00 33.17 2.74
2079 2143 5.575606 CGAGTATCAACCAACGAATTACAGT 59.424 40.000 0.00 0.00 33.17 3.55
2080 2144 6.748658 CGAGTATCAACCAACGAATTACAGTA 59.251 38.462 0.00 0.00 33.17 2.74
2121 2185 6.675413 TGTGCTAGTACTTCTTCCCTTAAA 57.325 37.500 12.42 0.00 0.00 1.52
2122 2186 7.069877 TGTGCTAGTACTTCTTCCCTTAAAA 57.930 36.000 12.42 0.00 0.00 1.52
2212 2276 4.921470 AAATACGTGTTTCTGGTCATCG 57.079 40.909 4.25 0.00 0.00 3.84
2246 2310 4.437858 CGTTCATATACGGTGCTTTCTG 57.562 45.455 0.00 0.00 37.86 3.02
2457 2533 2.607668 CTACGATCCGCCACGCTTCA 62.608 60.000 0.00 0.00 0.00 3.02
2463 2539 0.036765 TCCGCCACGCTTCAATAACT 60.037 50.000 0.00 0.00 0.00 2.24
2594 2672 2.002018 AAAGGGAAGGCACCGGTTCA 62.002 55.000 2.97 0.00 0.00 3.18
2634 2715 5.773239 TTTTAGAAGAACCTATGAACGCG 57.227 39.130 3.53 3.53 0.00 6.01
2982 3091 5.751586 ACGAATATACACATTTTCTGGGGT 58.248 37.500 0.00 0.00 29.93 4.95
2988 3097 6.933514 ATACACATTTTCTGGGGTCAAATT 57.066 33.333 0.00 0.00 29.93 1.82
3177 3290 3.896648 TCTTTCGAACAAATCACTGGC 57.103 42.857 0.00 0.00 0.00 4.85
3500 3618 3.322828 AGTCCAAATGAAACAGCAAGCAT 59.677 39.130 0.00 0.00 0.00 3.79
3534 3652 1.206523 GTTAGGTCGTTAGCGCCATC 58.793 55.000 2.29 0.00 36.97 3.51
3563 3695 1.953559 TGCAGTTTCGAACTTGCTCT 58.046 45.000 24.92 5.77 40.46 4.09
3726 3861 0.114168 ACAATGGGCCCTTGCTACAA 59.886 50.000 25.70 0.00 37.74 2.41
3813 3948 6.128007 CCCGCACAAGTTTAATGACTAGAAAT 60.128 38.462 0.00 0.00 0.00 2.17
3855 3990 4.936823 AAACTGACCGTCGCGCGT 62.937 61.111 30.98 10.67 39.32 6.01
3979 4120 3.447586 CCGTCTTAAGAACCTGAGATGGA 59.552 47.826 6.78 0.00 44.46 3.41
4008 4156 3.437049 GGTGTTGGTTGATCTAAGCAGTC 59.563 47.826 8.89 7.84 46.39 3.51
4086 4241 7.882791 TCCTCTTTAGTCAAACTTGCATATTGA 59.117 33.333 5.51 5.51 0.00 2.57
4087 4242 8.680903 CCTCTTTAGTCAAACTTGCATATTGAT 58.319 33.333 11.11 5.36 35.70 2.57
4088 4243 9.713740 CTCTTTAGTCAAACTTGCATATTGATC 57.286 33.333 11.11 6.77 35.70 2.92
4094 4249 8.025445 AGTCAAACTTGCATATTGATCTGTTTC 58.975 33.333 11.11 0.28 35.70 2.78
4375 4532 1.066858 GGTGAAGAGGCACGATCAAGA 60.067 52.381 0.00 0.00 39.66 3.02
4432 4589 4.325204 TCGGAGTGTTTATTGAACGAATCG 59.675 41.667 0.00 0.00 41.29 3.34
4458 4615 0.244721 GGCTTGTCCACAAATGCTCC 59.755 55.000 4.29 0.00 35.15 4.70
4468 4625 3.928375 CCACAAATGCTCCAAATGTAAGC 59.072 43.478 0.00 0.00 36.56 3.09
4490 4647 4.003648 CACTATTGGGAAGTGTGAAGGAC 58.996 47.826 0.00 0.00 39.61 3.85
4548 4705 3.789756 GCTTCAGTTGATGATGAATTGCG 59.210 43.478 0.00 0.00 37.89 4.85
4565 4722 0.747255 GCGTGCTAGGAAGGATGAGA 59.253 55.000 0.00 0.00 32.03 3.27
4622 4779 5.586643 GGGAGTGTGAATAATCTTGGAAGAC 59.413 44.000 0.00 0.00 37.98 3.01
4723 4880 1.032114 GTGGTTCCAGCTACCATGGC 61.032 60.000 13.04 0.00 46.63 4.40
4865 5022 1.669999 GATTGACATGCAGCCACCCC 61.670 60.000 0.00 0.00 0.00 4.95
4876 5033 1.678970 GCCACCCCCAAGTGATGAC 60.679 63.158 0.00 0.00 40.34 3.06
5111 5268 6.322712 AGACTACCTTAGCAGGATCAGTTTAG 59.677 42.308 0.00 0.00 44.19 1.85
5193 5350 0.108207 TTTCCCCAAAACGAGGCGTA 59.892 50.000 0.00 0.00 39.99 4.42
5197 5354 1.677820 CCCCAAAACGAGGCGTATTCT 60.678 52.381 0.00 0.00 39.99 2.40
5211 5368 2.414481 CGTATTCTGCTGATGGCTATGC 59.586 50.000 0.00 0.00 42.39 3.14
5386 5543 2.731572 ACAGGGGATGCTTCTTTCATG 58.268 47.619 0.00 0.00 0.00 3.07
5413 5570 6.980978 CAGAAATTCTAAGGTCTAGCGATGAA 59.019 38.462 0.00 0.00 0.00 2.57
5495 5652 6.642707 ATGATTAGTAGCTGGAGTGTACTC 57.357 41.667 0.00 3.43 42.14 2.59
5507 5664 3.428532 GAGTGTACTCCCTCTACCACAA 58.571 50.000 0.48 0.00 37.02 3.33
5508 5665 4.024670 GAGTGTACTCCCTCTACCACAAT 58.975 47.826 0.48 0.00 37.02 2.71
5509 5666 5.198965 GAGTGTACTCCCTCTACCACAATA 58.801 45.833 0.48 0.00 37.02 1.90
5512 5669 5.421374 GTGTACTCCCTCTACCACAATACTT 59.579 44.000 0.00 0.00 0.00 2.24
5514 5671 4.426704 ACTCCCTCTACCACAATACTTGT 58.573 43.478 0.00 0.00 46.75 3.16
5515 5672 4.844655 ACTCCCTCTACCACAATACTTGTT 59.155 41.667 0.00 0.00 43.23 2.83
5516 5673 5.160607 TCCCTCTACCACAATACTTGTTG 57.839 43.478 0.00 0.00 43.23 3.33
5517 5674 4.595781 TCCCTCTACCACAATACTTGTTGT 59.404 41.667 2.82 2.82 43.23 3.32
5518 5675 5.072600 TCCCTCTACCACAATACTTGTTGTT 59.927 40.000 2.59 0.00 43.23 2.83
5519 5676 5.181245 CCCTCTACCACAATACTTGTTGTTG 59.819 44.000 2.59 1.86 43.23 3.33
5520 5677 5.181245 CCTCTACCACAATACTTGTTGTTGG 59.819 44.000 2.59 0.00 43.23 3.77
5522 5679 5.995282 TCTACCACAATACTTGTTGTTGGAG 59.005 40.000 11.50 5.51 43.23 3.86
5523 5680 3.888930 ACCACAATACTTGTTGTTGGAGG 59.111 43.478 11.50 3.99 43.23 4.30
5524 5681 4.141287 CCACAATACTTGTTGTTGGAGGA 58.859 43.478 0.00 0.00 43.23 3.71
5526 5683 5.507315 CCACAATACTTGTTGTTGGAGGAAC 60.507 44.000 0.00 0.00 43.23 3.62
5527 5684 5.299279 CACAATACTTGTTGTTGGAGGAACT 59.701 40.000 0.00 0.00 43.23 3.01
5528 5685 5.891551 ACAATACTTGTTGTTGGAGGAACTT 59.108 36.000 0.00 0.00 42.22 2.66
5529 5686 6.183360 ACAATACTTGTTGTTGGAGGAACTTG 60.183 38.462 0.00 0.00 42.22 3.16
5531 5688 4.850680 ACTTGTTGTTGGAGGAACTTGTA 58.149 39.130 0.00 0.00 41.55 2.41
5532 5689 4.638865 ACTTGTTGTTGGAGGAACTTGTAC 59.361 41.667 0.00 0.00 41.55 2.90
5533 5690 4.497291 TGTTGTTGGAGGAACTTGTACT 57.503 40.909 0.00 0.00 41.55 2.73
5534 5691 5.617528 TGTTGTTGGAGGAACTTGTACTA 57.382 39.130 0.00 0.00 41.55 1.82
5535 5692 5.607477 TGTTGTTGGAGGAACTTGTACTAG 58.393 41.667 2.56 2.56 41.55 2.57
5537 5694 5.881923 TGTTGGAGGAACTTGTACTAGTT 57.118 39.130 20.40 20.40 41.55 2.24
5538 5695 6.243216 TGTTGGAGGAACTTGTACTAGTTT 57.757 37.500 21.05 8.77 41.55 2.66
5539 5696 6.655930 TGTTGGAGGAACTTGTACTAGTTTT 58.344 36.000 21.05 13.79 41.55 2.43
5540 5697 6.764560 TGTTGGAGGAACTTGTACTAGTTTTC 59.235 38.462 21.05 19.50 41.55 2.29
5541 5698 5.861727 TGGAGGAACTTGTACTAGTTTTCC 58.138 41.667 27.88 27.88 41.55 3.13
5543 5700 5.238624 AGGAACTTGTACTAGTTTTCCCC 57.761 43.478 21.05 17.16 38.43 4.81
5545 5702 5.133153 AGGAACTTGTACTAGTTTTCCCCAA 59.867 40.000 21.05 0.00 38.43 4.12
5548 5705 6.752285 ACTTGTACTAGTTTTCCCCAACTA 57.248 37.500 0.00 0.00 38.07 2.24
5549 5706 6.528321 ACTTGTACTAGTTTTCCCCAACTAC 58.472 40.000 0.00 0.00 38.07 2.73
5550 5707 6.100134 ACTTGTACTAGTTTTCCCCAACTACA 59.900 38.462 0.00 0.00 38.07 2.74
5551 5708 6.497624 TGTACTAGTTTTCCCCAACTACAA 57.502 37.500 0.00 0.00 38.07 2.41
5552 5709 6.527423 TGTACTAGTTTTCCCCAACTACAAG 58.473 40.000 0.00 0.00 38.07 3.16
5553 5710 5.641789 ACTAGTTTTCCCCAACTACAAGT 57.358 39.130 0.00 0.00 38.07 3.16
5554 5711 6.752285 ACTAGTTTTCCCCAACTACAAGTA 57.248 37.500 0.00 0.00 38.07 2.24
5555 5712 7.325725 ACTAGTTTTCCCCAACTACAAGTAT 57.674 36.000 0.00 0.00 38.07 2.12
5556 5713 7.752638 ACTAGTTTTCCCCAACTACAAGTATT 58.247 34.615 0.00 0.00 38.07 1.89
5557 5714 8.222637 ACTAGTTTTCCCCAACTACAAGTATTT 58.777 33.333 0.00 0.00 38.07 1.40
5558 5715 7.520451 AGTTTTCCCCAACTACAAGTATTTC 57.480 36.000 0.00 0.00 35.10 2.17
5559 5716 6.206048 AGTTTTCCCCAACTACAAGTATTTCG 59.794 38.462 0.00 0.00 35.10 3.46
5560 5717 4.210724 TCCCCAACTACAAGTATTTCGG 57.789 45.455 0.00 0.00 0.00 4.30
5561 5718 3.583966 TCCCCAACTACAAGTATTTCGGT 59.416 43.478 0.00 0.00 0.00 4.69
5562 5719 4.776837 TCCCCAACTACAAGTATTTCGGTA 59.223 41.667 0.00 0.00 0.00 4.02
5563 5720 4.872124 CCCCAACTACAAGTATTTCGGTAC 59.128 45.833 0.00 0.00 0.00 3.34
5564 5721 5.481105 CCCAACTACAAGTATTTCGGTACA 58.519 41.667 0.00 0.00 0.00 2.90
5565 5722 5.933463 CCCAACTACAAGTATTTCGGTACAA 59.067 40.000 0.00 0.00 0.00 2.41
5566 5723 6.427547 CCCAACTACAAGTATTTCGGTACAAA 59.572 38.462 0.00 0.00 0.00 2.83
5567 5724 7.360607 CCCAACTACAAGTATTTCGGTACAAAG 60.361 40.741 0.00 0.00 0.00 2.77
5568 5725 7.360607 CCAACTACAAGTATTTCGGTACAAAGG 60.361 40.741 0.00 0.00 0.00 3.11
5569 5726 6.168389 ACTACAAGTATTTCGGTACAAAGGG 58.832 40.000 0.00 0.00 0.00 3.95
5570 5727 5.231702 ACAAGTATTTCGGTACAAAGGGA 57.768 39.130 0.00 0.00 0.00 4.20
5571 5728 5.243207 ACAAGTATTTCGGTACAAAGGGAG 58.757 41.667 0.00 0.00 0.00 4.30
5572 5729 5.221783 ACAAGTATTTCGGTACAAAGGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
5573 5730 6.014327 ACAAGTATTTCGGTACAAAGGGAGTA 60.014 38.462 0.00 0.00 0.00 2.59
5574 5731 6.218108 AGTATTTCGGTACAAAGGGAGTAG 57.782 41.667 0.00 0.00 0.00 2.57
5575 5732 5.718607 AGTATTTCGGTACAAAGGGAGTAGT 59.281 40.000 0.00 0.00 0.00 2.73
5576 5733 6.891908 AGTATTTCGGTACAAAGGGAGTAGTA 59.108 38.462 0.00 0.00 0.00 1.82
5577 5734 5.649782 TTTCGGTACAAAGGGAGTAGTAG 57.350 43.478 0.00 0.00 0.00 2.57
5578 5735 3.624777 TCGGTACAAAGGGAGTAGTAGG 58.375 50.000 0.00 0.00 0.00 3.18
5579 5736 3.010584 TCGGTACAAAGGGAGTAGTAGGT 59.989 47.826 0.00 0.00 0.00 3.08
5580 5737 4.227300 TCGGTACAAAGGGAGTAGTAGGTA 59.773 45.833 0.00 0.00 0.00 3.08
5581 5738 5.103940 TCGGTACAAAGGGAGTAGTAGGTAT 60.104 44.000 0.00 0.00 0.00 2.73
5582 5739 5.595952 CGGTACAAAGGGAGTAGTAGGTATT 59.404 44.000 0.00 0.00 0.00 1.89
5613 5770 8.731275 TCTTCGTATGGTTTGATAATGATGTT 57.269 30.769 0.00 0.00 0.00 2.71
5614 5771 8.611757 TCTTCGTATGGTTTGATAATGATGTTG 58.388 33.333 0.00 0.00 0.00 3.33
5615 5772 7.857734 TCGTATGGTTTGATAATGATGTTGT 57.142 32.000 0.00 0.00 0.00 3.32
5616 5773 7.693020 TCGTATGGTTTGATAATGATGTTGTG 58.307 34.615 0.00 0.00 0.00 3.33
5617 5774 7.335673 TCGTATGGTTTGATAATGATGTTGTGT 59.664 33.333 0.00 0.00 0.00 3.72
5618 5775 7.639850 CGTATGGTTTGATAATGATGTTGTGTC 59.360 37.037 0.00 0.00 0.00 3.67
5619 5776 6.890979 TGGTTTGATAATGATGTTGTGTCA 57.109 33.333 0.00 0.00 0.00 3.58
5683 5842 2.371510 GGCTTCTCTCTTATGCCCTCAT 59.628 50.000 0.00 0.00 37.81 2.90
5702 5861 6.038356 CCTCATGAGGCATTACAAATTGTTC 58.962 40.000 28.45 0.00 42.44 3.18
5717 5876 7.549839 ACAAATTGTTCCTGATAATGATGTGG 58.450 34.615 0.00 0.00 0.00 4.17
5738 5901 8.514330 TGTGGGTCATGTTTTATTACTAATCC 57.486 34.615 0.00 0.00 0.00 3.01
5741 5904 7.496591 TGGGTCATGTTTTATTACTAATCCGAC 59.503 37.037 0.00 0.00 0.00 4.79
5757 5920 1.064946 GACCGCTCTCATGTCTCCG 59.935 63.158 0.00 0.00 0.00 4.63
5768 5931 2.159099 TCATGTCTCCGTTGTCCATAGC 60.159 50.000 0.00 0.00 0.00 2.97
5804 5967 5.172934 GCAACACAAATCCATCATGTCAAT 58.827 37.500 0.00 0.00 0.00 2.57
5840 6003 5.523552 CCTCACATTCTTGGGTTTTTGTTTC 59.476 40.000 0.00 0.00 0.00 2.78
5850 6013 6.956202 TGGGTTTTTGTTTCGTTTATCCTA 57.044 33.333 0.00 0.00 0.00 2.94
5888 6051 9.048446 ACAAATTTGATCATATATTTTGCAGGC 57.952 29.630 24.64 0.00 0.00 4.85
5916 6949 8.186163 CACATGTTTTAGCATGATACACATCTT 58.814 33.333 12.61 1.61 46.65 2.40
5969 7002 3.744660 AGTGCTAAACCCTGAACTCAAG 58.255 45.455 0.00 0.00 0.00 3.02
5989 7022 3.408634 AGCAACCACACTTGTATGTACC 58.591 45.455 0.00 0.00 0.00 3.34
6003 7036 4.521256 TGTATGTACCTTTGCCTTTTCCAC 59.479 41.667 0.00 0.00 0.00 4.02
6021 7054 5.055642 TCCACAGAATAGATTATACGGCG 57.944 43.478 4.80 4.80 0.00 6.46
6048 7081 8.310382 AGAGAGCTGTTTTATGATAATAGCGAT 58.690 33.333 0.00 0.00 42.41 4.58
6072 7105 2.555325 TCATTGCTCACTTGCTTTCCTG 59.445 45.455 0.00 0.00 0.00 3.86
6077 7110 1.682854 CTCACTTGCTTTCCTGGCAAA 59.317 47.619 2.87 0.00 46.81 3.68
6081 7114 2.159057 ACTTGCTTTCCTGGCAAACTTG 60.159 45.455 2.87 0.00 46.81 3.16
6102 7135 1.666553 TTGCCCGTGTAGCAACTCG 60.667 57.895 0.00 0.00 44.95 4.18
6105 7138 1.897398 GCCCGTGTAGCAACTCGTTG 61.897 60.000 5.45 5.45 40.16 4.10
6173 7206 2.772077 TATGGTTTTCGCCTACTGCA 57.228 45.000 0.00 0.00 41.33 4.41
6176 7209 1.606668 TGGTTTTCGCCTACTGCAAAG 59.393 47.619 0.00 0.00 41.33 2.77
6201 7234 7.605691 AGATTGGCAGATCTGTTAACTATATGC 59.394 37.037 23.38 22.27 37.17 3.14
6205 7238 5.121454 GCAGATCTGTTAACTATATGCTGCC 59.879 44.000 23.38 10.41 39.12 4.85
6206 7239 6.226052 CAGATCTGTTAACTATATGCTGCCA 58.774 40.000 14.95 0.00 0.00 4.92
6207 7240 6.707608 CAGATCTGTTAACTATATGCTGCCAA 59.292 38.462 14.95 0.00 0.00 4.52
6208 7241 7.227314 CAGATCTGTTAACTATATGCTGCCAAA 59.773 37.037 14.95 0.00 0.00 3.28
6209 7242 7.941238 AGATCTGTTAACTATATGCTGCCAAAT 59.059 33.333 7.22 0.00 0.00 2.32
6210 7243 9.219603 GATCTGTTAACTATATGCTGCCAAATA 57.780 33.333 7.22 0.00 0.00 1.40
6211 7244 8.972458 TCTGTTAACTATATGCTGCCAAATAA 57.028 30.769 7.22 0.00 0.00 1.40
6212 7245 9.402320 TCTGTTAACTATATGCTGCCAAATAAA 57.598 29.630 7.22 0.00 0.00 1.40
6238 7271 8.974060 TCATAAGTAATAATGGTGGAGAAACC 57.026 34.615 0.00 0.00 40.94 3.27
6306 7339 9.884465 CAGTAGCTAAGACCATTAATTAAATGC 57.116 33.333 1.21 0.00 43.18 3.56
6307 7340 9.067986 AGTAGCTAAGACCATTAATTAAATGCC 57.932 33.333 1.21 0.00 43.18 4.40
6308 7341 9.067986 GTAGCTAAGACCATTAATTAAATGCCT 57.932 33.333 1.21 0.00 43.18 4.75
6309 7342 8.539117 AGCTAAGACCATTAATTAAATGCCTT 57.461 30.769 1.21 6.73 43.18 4.35
6310 7343 8.981659 AGCTAAGACCATTAATTAAATGCCTTT 58.018 29.630 1.21 0.00 43.18 3.11
6311 7344 9.599866 GCTAAGACCATTAATTAAATGCCTTTT 57.400 29.630 1.21 0.00 43.18 2.27
6314 7347 9.791801 AAGACCATTAATTAAATGCCTTTTTGT 57.208 25.926 1.21 0.00 43.18 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.415357 CGTTTTCGTATGGCAAGGCATT 60.415 45.455 14.49 0.00 38.65 3.56
91 92 2.925170 AGAGGTCACGCCCTGCTT 60.925 61.111 0.00 0.00 38.26 3.91
114 123 0.958091 TCCCAACCTGAATTGCAACG 59.042 50.000 0.00 0.00 0.00 4.10
120 131 0.609131 CCGTGCTCCCAACCTGAATT 60.609 55.000 0.00 0.00 0.00 2.17
174 186 1.778334 TCGTTCACGACCACATTGAG 58.222 50.000 0.00 0.00 44.22 3.02
197 209 2.592102 AGATCTTGTGGTGGTTGCAT 57.408 45.000 0.00 0.00 0.00 3.96
241 253 6.851609 TCTTCCACCATTTCATTTATTCGTG 58.148 36.000 0.00 0.00 0.00 4.35
243 255 8.755696 TTTTCTTCCACCATTTCATTTATTCG 57.244 30.769 0.00 0.00 0.00 3.34
272 284 4.660303 ACAAAGGCATGGATAGTGGAGATA 59.340 41.667 0.00 0.00 0.00 1.98
417 430 1.006102 GGCGACGGATATGGACCAG 60.006 63.158 0.00 0.00 0.00 4.00
452 468 4.728102 CGTCGTAGCCGGTGCCAA 62.728 66.667 1.90 0.00 38.69 4.52
478 494 2.097036 TCGTCGCTTGGAGGAGATTTA 58.903 47.619 0.00 0.00 34.77 1.40
498 514 2.140717 CGCTTTCGTAGGAGTTTTGGT 58.859 47.619 0.00 0.00 0.00 3.67
521 537 0.249741 GATATGGCCGTTACCACGCT 60.250 55.000 0.77 0.00 45.72 5.07
529 545 1.266175 CTACGTCTCGATATGGCCGTT 59.734 52.381 0.77 0.00 0.00 4.44
530 546 0.873054 CTACGTCTCGATATGGCCGT 59.127 55.000 1.35 1.35 0.00 5.68
538 554 3.949754 TCCATACCAAACTACGTCTCGAT 59.050 43.478 0.00 0.00 0.00 3.59
548 564 2.704065 CCCTATCCGTCCATACCAAACT 59.296 50.000 0.00 0.00 0.00 2.66
584 606 4.631740 TCCGGCCACCTCCTCACA 62.632 66.667 2.24 0.00 0.00 3.58
594 616 1.971505 CTGCCACTATTCTCCGGCCA 61.972 60.000 2.24 0.00 44.22 5.36
629 651 3.013932 CCTGCTCTTCCCTGCCCT 61.014 66.667 0.00 0.00 0.00 5.19
638 660 2.520536 AACGCCTCCACCTGCTCTT 61.521 57.895 0.00 0.00 0.00 2.85
644 666 2.750350 CCTTCAACGCCTCCACCT 59.250 61.111 0.00 0.00 0.00 4.00
658 680 0.905357 ACTAGCAGTCCATTCGCCTT 59.095 50.000 0.00 0.00 0.00 4.35
685 710 2.866523 ATTCTCCCGTGGCCCGTCTA 62.867 60.000 0.00 0.00 33.66 2.59
688 713 1.342672 ATTATTCTCCCGTGGCCCGT 61.343 55.000 0.00 0.00 33.66 5.28
704 730 1.370587 GGGCTAAACGCACGCCATTA 61.371 55.000 7.72 0.00 45.53 1.90
728 754 6.474102 AGTTTAAATTGAAACAAACATCGCGT 59.526 30.769 18.71 0.00 41.00 6.01
737 763 7.760340 ACTTACGCCAAGTTTAAATTGAAACAA 59.240 29.630 18.71 3.74 45.54 2.83
776 802 7.435784 GGTGCGTCTGTTTTCCTTTTTAATTTA 59.564 33.333 0.00 0.00 0.00 1.40
777 803 6.256975 GGTGCGTCTGTTTTCCTTTTTAATTT 59.743 34.615 0.00 0.00 0.00 1.82
778 804 5.751509 GGTGCGTCTGTTTTCCTTTTTAATT 59.248 36.000 0.00 0.00 0.00 1.40
779 805 5.286438 GGTGCGTCTGTTTTCCTTTTTAAT 58.714 37.500 0.00 0.00 0.00 1.40
780 806 4.674475 GGTGCGTCTGTTTTCCTTTTTAA 58.326 39.130 0.00 0.00 0.00 1.52
781 807 3.242804 CGGTGCGTCTGTTTTCCTTTTTA 60.243 43.478 0.00 0.00 0.00 1.52
782 808 2.478879 CGGTGCGTCTGTTTTCCTTTTT 60.479 45.455 0.00 0.00 0.00 1.94
783 809 1.064952 CGGTGCGTCTGTTTTCCTTTT 59.935 47.619 0.00 0.00 0.00 2.27
784 810 0.661020 CGGTGCGTCTGTTTTCCTTT 59.339 50.000 0.00 0.00 0.00 3.11
785 811 1.164041 CCGGTGCGTCTGTTTTCCTT 61.164 55.000 0.00 0.00 0.00 3.36
786 812 1.597027 CCGGTGCGTCTGTTTTCCT 60.597 57.895 0.00 0.00 0.00 3.36
787 813 1.595929 TCCGGTGCGTCTGTTTTCC 60.596 57.895 0.00 0.00 0.00 3.13
788 814 1.568025 GTCCGGTGCGTCTGTTTTC 59.432 57.895 0.00 0.00 0.00 2.29
789 815 2.241880 CGTCCGGTGCGTCTGTTTT 61.242 57.895 0.00 0.00 0.00 2.43
790 816 2.660552 CGTCCGGTGCGTCTGTTT 60.661 61.111 0.00 0.00 0.00 2.83
791 817 4.657824 CCGTCCGGTGCGTCTGTT 62.658 66.667 16.92 0.00 0.00 3.16
808 834 4.353437 AACTCCGTCGCGTGACCC 62.353 66.667 22.62 0.00 42.37 4.46
809 835 3.103911 CAACTCCGTCGCGTGACC 61.104 66.667 22.62 6.05 42.37 4.02
810 836 3.103911 CCAACTCCGTCGCGTGAC 61.104 66.667 19.11 19.11 41.91 3.67
812 838 3.620300 TAGCCAACTCCGTCGCGTG 62.620 63.158 5.77 0.00 0.00 5.34
813 839 2.922950 TTAGCCAACTCCGTCGCGT 61.923 57.895 5.77 0.00 0.00 6.01
814 840 2.126228 TTAGCCAACTCCGTCGCG 60.126 61.111 0.00 0.00 0.00 5.87
815 841 2.442188 CGTTAGCCAACTCCGTCGC 61.442 63.158 0.00 0.00 32.09 5.19
816 842 2.442188 GCGTTAGCCAACTCCGTCG 61.442 63.158 0.00 0.00 37.42 5.12
817 843 2.442188 CGCGTTAGCCAACTCCGTC 61.442 63.158 0.00 0.00 41.18 4.79
818 844 2.424705 TTCGCGTTAGCCAACTCCGT 62.425 55.000 5.77 0.00 41.18 4.69
819 845 1.286354 TTTCGCGTTAGCCAACTCCG 61.286 55.000 5.77 0.00 41.18 4.63
820 846 0.442699 CTTTCGCGTTAGCCAACTCC 59.557 55.000 5.77 0.00 41.18 3.85
821 847 0.179222 GCTTTCGCGTTAGCCAACTC 60.179 55.000 19.58 0.00 41.18 3.01
822 848 1.866925 GCTTTCGCGTTAGCCAACT 59.133 52.632 19.58 0.00 41.18 3.16
823 849 4.434876 GCTTTCGCGTTAGCCAAC 57.565 55.556 19.58 0.00 41.18 3.77
951 984 1.369625 CGTATGGCCCTTCTGTGTTC 58.630 55.000 0.00 0.00 0.00 3.18
953 986 0.907704 TCCGTATGGCCCTTCTGTGT 60.908 55.000 0.00 0.00 34.14 3.72
954 987 0.179073 CTCCGTATGGCCCTTCTGTG 60.179 60.000 0.00 0.00 34.14 3.66
983 1016 1.805945 ATCGCGAACCAACGAGCTC 60.806 57.895 15.24 2.73 42.31 4.09
984 1017 2.094659 CATCGCGAACCAACGAGCT 61.095 57.895 15.24 0.00 42.31 4.09
986 1019 3.081133 CCATCGCGAACCAACGAG 58.919 61.111 15.24 0.00 42.31 4.18
1122 1161 3.869272 GGAATGGTGAGCGCGCAG 61.869 66.667 35.10 0.72 0.00 5.18
1126 1165 3.134127 GGTGGGAATGGTGAGCGC 61.134 66.667 0.00 0.00 0.00 5.92
1127 1166 2.819595 CGGTGGGAATGGTGAGCG 60.820 66.667 0.00 0.00 0.00 5.03
1130 1169 1.899437 GAGAGCGGTGGGAATGGTGA 61.899 60.000 0.00 0.00 0.00 4.02
1132 1171 2.670148 GGAGAGCGGTGGGAATGGT 61.670 63.158 0.00 0.00 0.00 3.55
1133 1172 2.190578 GGAGAGCGGTGGGAATGG 59.809 66.667 0.00 0.00 0.00 3.16
1134 1173 2.190578 GGGAGAGCGGTGGGAATG 59.809 66.667 0.00 0.00 0.00 2.67
1135 1174 3.090532 GGGGAGAGCGGTGGGAAT 61.091 66.667 0.00 0.00 0.00 3.01
1153 1192 3.443045 AGGCAAAATGCGCGGGAG 61.443 61.111 8.83 0.00 46.21 4.30
1174 1213 1.376424 AGCAGTCAGTCGGCAATGG 60.376 57.895 0.00 0.00 39.61 3.16
1182 1221 2.807045 CGGCGACAGCAGTCAGTC 60.807 66.667 10.09 3.20 45.23 3.51
1274 1323 3.453070 GAGGATGGCGAGCACCTCC 62.453 68.421 17.58 10.95 41.89 4.30
1308 1357 3.202706 GGCATCGGAGAAACGGCC 61.203 66.667 0.00 0.00 43.58 6.13
1309 1358 3.564027 CGGCATCGGAGAAACGGC 61.564 66.667 0.00 0.00 43.58 5.68
1310 1359 3.564027 GCGGCATCGGAGAAACGG 61.564 66.667 0.00 0.00 43.58 4.44
1311 1360 2.813474 TGCGGCATCGGAGAAACG 60.813 61.111 0.00 0.00 43.58 3.60
1508 1563 2.409870 GGCTTTGAGATGCGGGTGG 61.410 63.158 0.00 0.00 0.00 4.61
1511 1566 2.117156 CCTGGCTTTGAGATGCGGG 61.117 63.158 0.00 0.00 0.00 6.13
1631 1695 2.726351 CCTGGACCTCGGCTCCTTC 61.726 68.421 0.00 0.00 0.00 3.46
1654 1718 1.851666 GCAAATGTGGTTGTGTCGTTG 59.148 47.619 0.00 0.00 0.00 4.10
1655 1719 1.748493 AGCAAATGTGGTTGTGTCGTT 59.252 42.857 0.00 0.00 28.67 3.85
1656 1720 1.065401 CAGCAAATGTGGTTGTGTCGT 59.935 47.619 0.00 0.00 31.53 4.34
1657 1721 1.333308 TCAGCAAATGTGGTTGTGTCG 59.667 47.619 0.00 0.00 31.53 4.35
1658 1722 3.435105 TTCAGCAAATGTGGTTGTGTC 57.565 42.857 0.00 0.00 31.53 3.67
1659 1723 3.195396 AGTTTCAGCAAATGTGGTTGTGT 59.805 39.130 0.00 0.00 31.53 3.72
1660 1724 3.552699 CAGTTTCAGCAAATGTGGTTGTG 59.447 43.478 0.00 0.00 31.53 3.33
1661 1725 3.195396 ACAGTTTCAGCAAATGTGGTTGT 59.805 39.130 0.00 0.00 31.53 3.32
1737 1801 4.995124 ACCTGTTACAGCGATAGTGTAAG 58.005 43.478 6.88 0.00 40.53 2.34
1747 1811 0.512952 GTCTGCAACCTGTTACAGCG 59.487 55.000 6.88 3.20 34.71 5.18
1749 1813 3.111853 TCAGTCTGCAACCTGTTACAG 57.888 47.619 5.22 5.22 35.74 2.74
1819 1883 4.133820 TCATCGGTGCAATCGGATTTTAT 58.866 39.130 0.00 0.00 0.00 1.40
1820 1884 3.536570 TCATCGGTGCAATCGGATTTTA 58.463 40.909 0.00 0.00 0.00 1.52
1859 1923 2.671070 CGTCTTGGCCCACCTCAT 59.329 61.111 0.00 0.00 36.63 2.90
1887 1951 4.017126 TCTCATACTCACTACCACCACAG 58.983 47.826 0.00 0.00 0.00 3.66
2017 2081 3.834610 CACGTACCGAAGTTGAATCTCT 58.165 45.455 0.00 0.00 0.00 3.10
2043 2107 8.500773 GTTGGTTGATACTCGAATGAAAGTAAA 58.499 33.333 0.00 0.00 32.08 2.01
2065 2129 8.404000 ACTGTATCTAGTACTGTAATTCGTTGG 58.596 37.037 5.39 0.00 41.80 3.77
2076 2140 7.435488 GCACAATAACCACTGTATCTAGTACTG 59.565 40.741 5.39 0.00 38.00 2.74
2077 2141 7.342284 AGCACAATAACCACTGTATCTAGTACT 59.658 37.037 0.00 0.00 34.27 2.73
2078 2142 7.490000 AGCACAATAACCACTGTATCTAGTAC 58.510 38.462 0.00 0.00 0.00 2.73
2079 2143 7.655521 AGCACAATAACCACTGTATCTAGTA 57.344 36.000 0.00 0.00 0.00 1.82
2080 2144 6.546428 AGCACAATAACCACTGTATCTAGT 57.454 37.500 0.00 0.00 0.00 2.57
2121 2185 6.882678 ACTTGCGGTGTATTTACCTCTTATTT 59.117 34.615 0.00 0.00 38.62 1.40
2122 2186 6.412214 ACTTGCGGTGTATTTACCTCTTATT 58.588 36.000 0.00 0.00 38.62 1.40
2212 2276 2.474410 ATGAACGGAGGGACAAGTTC 57.526 50.000 0.77 0.77 42.19 3.01
2246 2310 1.726791 CATGATACGGCTGAATACGGC 59.273 52.381 0.00 0.00 46.60 5.68
2411 2487 3.882888 TGTTCTGTTTGAATCCCACTGTC 59.117 43.478 0.00 0.00 36.99 3.51
2471 2547 6.371548 GCTCCAAGAGTGTGAACAATATGTAA 59.628 38.462 0.00 0.00 31.39 2.41
2634 2715 3.838795 CACACGCGGCGAGCTTAC 61.839 66.667 30.94 0.00 45.59 2.34
2659 2740 0.621082 TCATTGTGGCCGGATGGTTA 59.379 50.000 5.05 0.00 37.67 2.85
2960 3069 5.820423 TGACCCCAGAAAATGTGTATATTCG 59.180 40.000 0.00 0.00 0.00 3.34
3125 3238 9.716507 GCGTACATTGATTATGAACTGTATTTT 57.283 29.630 0.00 0.00 37.69 1.82
3500 3618 2.708861 ACCTAACCACCACAACTGATCA 59.291 45.455 0.00 0.00 0.00 2.92
3534 3652 3.129852 TCGAAACTGCAAACTGTTGTG 57.870 42.857 0.00 0.00 37.92 3.33
3827 3962 0.951558 GGTCAGTTTGGTGCACGAAT 59.048 50.000 15.36 0.00 0.00 3.34
3961 4102 6.094603 CACCAAATCCATCTCAGGTTCTTAAG 59.905 42.308 0.00 0.00 0.00 1.85
3979 4120 3.575805 AGATCAACCAACACCACCAAAT 58.424 40.909 0.00 0.00 0.00 2.32
4008 4156 7.423199 CAATTTGATGACTATCAGGTCCATTG 58.577 38.462 0.00 0.00 43.76 2.82
4087 4242 8.458843 GGAGAATAAAAATCATTCCGAAACAGA 58.541 33.333 0.00 0.00 33.67 3.41
4088 4243 8.462016 AGGAGAATAAAAATCATTCCGAAACAG 58.538 33.333 0.00 0.00 33.67 3.16
4094 4249 9.669353 CATGTTAGGAGAATAAAAATCATTCCG 57.331 33.333 0.00 0.00 33.67 4.30
4170 4327 5.032863 GCAACTGCAAAGCTCACTATTATG 58.967 41.667 0.00 0.00 41.59 1.90
4171 4328 4.946157 AGCAACTGCAAAGCTCACTATTAT 59.054 37.500 4.22 0.00 45.16 1.28
4172 4329 4.154737 CAGCAACTGCAAAGCTCACTATTA 59.845 41.667 4.22 0.00 45.16 0.98
4173 4330 3.057736 CAGCAACTGCAAAGCTCACTATT 60.058 43.478 4.22 0.00 45.16 1.73
4174 4331 2.486982 CAGCAACTGCAAAGCTCACTAT 59.513 45.455 4.22 0.00 45.16 2.12
4181 4338 3.879295 TCTATATCCAGCAACTGCAAAGC 59.121 43.478 4.22 0.00 45.16 3.51
4299 4456 1.354368 CCCTCTGTCCCCAAGCTTTTA 59.646 52.381 0.00 0.00 0.00 1.52
4337 4494 8.367660 TCTTCACCAACTAGTTCTCTATTCAT 57.632 34.615 4.77 0.00 0.00 2.57
4420 4577 1.472480 CCAAAGGCCGATTCGTTCAAT 59.528 47.619 5.20 0.00 0.00 2.57
4458 4615 6.071952 ACACTTCCCAATAGTGCTTACATTTG 60.072 38.462 0.00 0.00 45.38 2.32
4468 4625 4.003648 GTCCTTCACACTTCCCAATAGTG 58.996 47.826 0.00 0.00 46.56 2.74
4469 4626 3.009143 GGTCCTTCACACTTCCCAATAGT 59.991 47.826 0.00 0.00 0.00 2.12
4490 4647 2.738846 CCCGCTCGAAATCATTATCAGG 59.261 50.000 0.00 0.00 0.00 3.86
4536 4693 3.198409 TCCTAGCACGCAATTCATCAT 57.802 42.857 0.00 0.00 0.00 2.45
4548 4705 5.770663 TGTACTATCTCATCCTTCCTAGCAC 59.229 44.000 0.00 0.00 0.00 4.40
4605 4762 5.441718 AGCTGGTCTTCCAAGATTATTCA 57.558 39.130 0.00 0.00 43.81 2.57
4622 4779 3.491447 CCTTTTTGTGGTGAAGAAGCTGG 60.491 47.826 0.00 0.00 0.00 4.85
4865 5022 0.391661 CCTCCCACGTCATCACTTGG 60.392 60.000 0.00 0.00 40.89 3.61
4876 5033 0.818296 CCTCTAGAACACCTCCCACG 59.182 60.000 0.00 0.00 0.00 4.94
5111 5268 1.180029 ACCTTTGCATCATCACCTGC 58.820 50.000 0.00 0.00 38.87 4.85
5211 5368 4.136796 TGATGTCAAACTGAACCTTGAGG 58.863 43.478 0.00 0.00 42.17 3.86
5386 5543 3.804873 CGCTAGACCTTAGAATTTCTGGC 59.195 47.826 9.22 1.90 38.75 4.85
5413 5570 4.774200 CCAGAAGACATTCCCCTTTTTGAT 59.226 41.667 0.00 0.00 35.94 2.57
5507 5664 5.445964 ACAAGTTCCTCCAACAACAAGTAT 58.554 37.500 0.00 0.00 37.48 2.12
5508 5665 4.850680 ACAAGTTCCTCCAACAACAAGTA 58.149 39.130 0.00 0.00 37.48 2.24
5509 5666 3.697166 ACAAGTTCCTCCAACAACAAGT 58.303 40.909 0.00 0.00 37.48 3.16
5512 5669 4.497291 AGTACAAGTTCCTCCAACAACA 57.503 40.909 0.00 0.00 37.48 3.33
5514 5671 5.881923 ACTAGTACAAGTTCCTCCAACAA 57.118 39.130 0.00 0.00 37.48 2.83
5515 5672 5.881923 AACTAGTACAAGTTCCTCCAACA 57.118 39.130 0.00 0.00 34.60 3.33
5516 5673 6.204301 GGAAAACTAGTACAAGTTCCTCCAAC 59.796 42.308 0.00 0.00 38.76 3.77
5517 5674 6.293698 GGAAAACTAGTACAAGTTCCTCCAA 58.706 40.000 0.00 0.00 38.76 3.53
5518 5675 5.221783 GGGAAAACTAGTACAAGTTCCTCCA 60.222 44.000 15.87 0.00 40.19 3.86
5519 5676 5.243981 GGGAAAACTAGTACAAGTTCCTCC 58.756 45.833 15.87 8.35 38.76 4.30
5520 5677 5.221783 TGGGGAAAACTAGTACAAGTTCCTC 60.222 44.000 15.87 14.04 38.76 3.71
5522 5679 4.976864 TGGGGAAAACTAGTACAAGTTCC 58.023 43.478 0.00 4.90 38.76 3.62
5523 5680 6.060136 AGTTGGGGAAAACTAGTACAAGTTC 58.940 40.000 0.00 0.00 38.76 3.01
5524 5681 6.009908 AGTTGGGGAAAACTAGTACAAGTT 57.990 37.500 0.00 0.00 41.46 2.66
5526 5683 6.527423 TGTAGTTGGGGAAAACTAGTACAAG 58.473 40.000 0.00 0.00 41.97 3.16
5527 5684 6.497624 TGTAGTTGGGGAAAACTAGTACAA 57.502 37.500 0.00 0.00 41.97 2.41
5528 5685 6.100134 ACTTGTAGTTGGGGAAAACTAGTACA 59.900 38.462 0.00 0.00 41.97 2.90
5529 5686 6.528321 ACTTGTAGTTGGGGAAAACTAGTAC 58.472 40.000 0.00 0.00 41.97 2.73
5531 5688 5.641789 ACTTGTAGTTGGGGAAAACTAGT 57.358 39.130 0.00 0.00 41.97 2.57
5532 5689 8.631480 AAATACTTGTAGTTGGGGAAAACTAG 57.369 34.615 0.00 0.00 41.97 2.57
5533 5690 7.388500 CGAAATACTTGTAGTTGGGGAAAACTA 59.612 37.037 0.00 0.00 40.77 2.24
5534 5691 6.206048 CGAAATACTTGTAGTTGGGGAAAACT 59.794 38.462 0.00 0.00 42.89 2.66
5535 5692 6.376177 CGAAATACTTGTAGTTGGGGAAAAC 58.624 40.000 0.00 0.00 0.00 2.43
5537 5694 5.005094 CCGAAATACTTGTAGTTGGGGAAA 58.995 41.667 12.11 0.00 0.00 3.13
5538 5695 4.041938 ACCGAAATACTTGTAGTTGGGGAA 59.958 41.667 20.08 0.00 29.20 3.97
5539 5696 3.583966 ACCGAAATACTTGTAGTTGGGGA 59.416 43.478 20.08 0.00 29.20 4.81
5540 5697 3.946606 ACCGAAATACTTGTAGTTGGGG 58.053 45.455 20.08 13.17 29.20 4.96
5541 5698 5.481105 TGTACCGAAATACTTGTAGTTGGG 58.519 41.667 16.40 16.40 0.00 4.12
5543 5700 7.360607 CCCTTTGTACCGAAATACTTGTAGTTG 60.361 40.741 0.00 0.00 0.00 3.16
5545 5702 6.014327 TCCCTTTGTACCGAAATACTTGTAGT 60.014 38.462 0.00 0.00 0.00 2.73
5548 5705 5.221783 ACTCCCTTTGTACCGAAATACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
5549 5706 5.243207 ACTCCCTTTGTACCGAAATACTTG 58.757 41.667 0.00 0.00 0.00 3.16
5550 5707 5.494390 ACTCCCTTTGTACCGAAATACTT 57.506 39.130 0.00 0.00 0.00 2.24
5551 5708 5.718607 ACTACTCCCTTTGTACCGAAATACT 59.281 40.000 0.00 0.00 0.00 2.12
5552 5709 5.970592 ACTACTCCCTTTGTACCGAAATAC 58.029 41.667 0.00 0.00 0.00 1.89
5553 5710 6.322201 CCTACTACTCCCTTTGTACCGAAATA 59.678 42.308 0.00 0.00 0.00 1.40
5554 5711 5.128335 CCTACTACTCCCTTTGTACCGAAAT 59.872 44.000 0.00 0.00 0.00 2.17
5555 5712 4.463891 CCTACTACTCCCTTTGTACCGAAA 59.536 45.833 0.00 0.00 0.00 3.46
5556 5713 4.019174 CCTACTACTCCCTTTGTACCGAA 58.981 47.826 0.00 0.00 0.00 4.30
5557 5714 3.010584 ACCTACTACTCCCTTTGTACCGA 59.989 47.826 0.00 0.00 0.00 4.69
5558 5715 3.359950 ACCTACTACTCCCTTTGTACCG 58.640 50.000 0.00 0.00 0.00 4.02
5559 5716 7.429374 AAATACCTACTACTCCCTTTGTACC 57.571 40.000 0.00 0.00 0.00 3.34
5560 5717 7.199078 CGAAATACCTACTACTCCCTTTGTAC 58.801 42.308 0.00 0.00 0.00 2.90
5561 5718 6.322201 CCGAAATACCTACTACTCCCTTTGTA 59.678 42.308 0.00 0.00 0.00 2.41
5562 5719 5.128335 CCGAAATACCTACTACTCCCTTTGT 59.872 44.000 0.00 0.00 0.00 2.83
5563 5720 5.128335 ACCGAAATACCTACTACTCCCTTTG 59.872 44.000 0.00 0.00 0.00 2.77
5564 5721 5.275630 ACCGAAATACCTACTACTCCCTTT 58.724 41.667 0.00 0.00 0.00 3.11
5565 5722 4.876580 ACCGAAATACCTACTACTCCCTT 58.123 43.478 0.00 0.00 0.00 3.95
5566 5723 4.533001 ACCGAAATACCTACTACTCCCT 57.467 45.455 0.00 0.00 0.00 4.20
5567 5724 4.892345 AGAACCGAAATACCTACTACTCCC 59.108 45.833 0.00 0.00 0.00 4.30
5568 5725 6.462552 AAGAACCGAAATACCTACTACTCC 57.537 41.667 0.00 0.00 0.00 3.85
5569 5726 6.183360 ACGAAGAACCGAAATACCTACTACTC 60.183 42.308 0.00 0.00 0.00 2.59
5570 5727 5.649831 ACGAAGAACCGAAATACCTACTACT 59.350 40.000 0.00 0.00 0.00 2.57
5571 5728 5.884771 ACGAAGAACCGAAATACCTACTAC 58.115 41.667 0.00 0.00 0.00 2.73
5572 5729 7.255242 CCATACGAAGAACCGAAATACCTACTA 60.255 40.741 0.00 0.00 0.00 1.82
5573 5730 6.460676 CCATACGAAGAACCGAAATACCTACT 60.461 42.308 0.00 0.00 0.00 2.57
5574 5731 5.689068 CCATACGAAGAACCGAAATACCTAC 59.311 44.000 0.00 0.00 0.00 3.18
5575 5732 5.360714 ACCATACGAAGAACCGAAATACCTA 59.639 40.000 0.00 0.00 0.00 3.08
5576 5733 4.161001 ACCATACGAAGAACCGAAATACCT 59.839 41.667 0.00 0.00 0.00 3.08
5577 5734 4.436332 ACCATACGAAGAACCGAAATACC 58.564 43.478 0.00 0.00 0.00 2.73
5578 5735 6.091169 TCAAACCATACGAAGAACCGAAATAC 59.909 38.462 0.00 0.00 0.00 1.89
5579 5736 6.164876 TCAAACCATACGAAGAACCGAAATA 58.835 36.000 0.00 0.00 0.00 1.40
5580 5737 4.998672 TCAAACCATACGAAGAACCGAAAT 59.001 37.500 0.00 0.00 0.00 2.17
5581 5738 4.378774 TCAAACCATACGAAGAACCGAAA 58.621 39.130 0.00 0.00 0.00 3.46
5582 5739 3.992643 TCAAACCATACGAAGAACCGAA 58.007 40.909 0.00 0.00 0.00 4.30
5647 5806 6.151480 AGAGAGAAGCCTACACTACTTACAAC 59.849 42.308 0.00 0.00 0.00 3.32
5655 5814 4.585162 GGCATAAGAGAGAAGCCTACACTA 59.415 45.833 0.00 0.00 42.01 2.74
5683 5842 5.076182 TCAGGAACAATTTGTAATGCCTCA 58.924 37.500 1.76 0.00 0.00 3.86
5691 5850 8.685427 CCACATCATTATCAGGAACAATTTGTA 58.315 33.333 1.76 0.00 0.00 2.41
5692 5851 7.364056 CCCACATCATTATCAGGAACAATTTGT 60.364 37.037 0.00 0.00 0.00 2.83
5693 5852 6.982141 CCCACATCATTATCAGGAACAATTTG 59.018 38.462 0.00 0.00 0.00 2.32
5702 5861 4.722220 ACATGACCCACATCATTATCAGG 58.278 43.478 0.00 0.00 37.20 3.86
5717 5876 7.306983 CGGTCGGATTAGTAATAAAACATGACC 60.307 40.741 0.00 15.45 37.01 4.02
5738 5901 1.064946 GGAGACATGAGAGCGGTCG 59.935 63.158 9.28 0.00 36.68 4.79
5741 5904 0.803768 CAACGGAGACATGAGAGCGG 60.804 60.000 0.00 0.00 0.00 5.52
5757 5920 4.126524 GCGAGGGCTATGGACAAC 57.873 61.111 0.00 0.00 35.83 3.32
5804 5967 4.410099 AGAATGTGAGGGAAAAGCAATGA 58.590 39.130 0.00 0.00 0.00 2.57
5888 6051 4.730042 GTGTATCATGCTAAAACATGTGCG 59.270 41.667 0.00 0.00 46.15 5.34
5941 6974 2.642807 TCAGGGTTTAGCACTTTAGCCT 59.357 45.455 0.00 0.00 38.96 4.58
5969 7002 3.408634 AGGTACATACAAGTGTGGTTGC 58.591 45.455 0.00 0.00 33.62 4.17
5989 7022 5.964958 TCTATTCTGTGGAAAAGGCAAAG 57.035 39.130 0.00 0.00 34.90 2.77
6003 7036 6.424176 TCTCTCGCCGTATAATCTATTCTG 57.576 41.667 0.00 0.00 0.00 3.02
6021 7054 7.810282 TCGCTATTATCATAAAACAGCTCTCTC 59.190 37.037 7.19 0.00 0.00 3.20
6048 7081 5.012239 AGGAAAGCAAGTGAGCAATGATAA 58.988 37.500 0.00 0.00 36.85 1.75
6052 7085 2.352421 CCAGGAAAGCAAGTGAGCAATG 60.352 50.000 0.00 0.00 36.85 2.82
6077 7110 1.165270 GCTACACGGGCAAATCAAGT 58.835 50.000 0.00 0.00 0.00 3.16
6102 7135 3.432933 CCAAACATGCCTAACATTGCAAC 59.567 43.478 0.00 0.00 41.50 4.17
6105 7138 2.995258 CACCAAACATGCCTAACATTGC 59.005 45.455 0.00 0.00 36.64 3.56
6176 7209 7.605691 AGCATATAGTTAACAGATCTGCCAATC 59.394 37.037 22.83 9.57 0.00 2.67
6212 7245 9.574516 GGTTTCTCCACCATTATTACTTATGAT 57.425 33.333 0.00 0.00 36.73 2.45
6213 7246 8.553153 TGGTTTCTCCACCATTATTACTTATGA 58.447 33.333 0.00 0.00 42.27 2.15
6214 7247 8.746052 TGGTTTCTCCACCATTATTACTTATG 57.254 34.615 0.00 0.00 42.27 1.90
6280 7313 9.884465 GCATTTAATTAATGGTCTTAGCTACTG 57.116 33.333 0.00 0.00 43.20 2.74
6281 7314 9.067986 GGCATTTAATTAATGGTCTTAGCTACT 57.932 33.333 0.00 0.00 43.20 2.57
6282 7315 9.067986 AGGCATTTAATTAATGGTCTTAGCTAC 57.932 33.333 0.00 0.00 43.20 3.58
6283 7316 9.640952 AAGGCATTTAATTAATGGTCTTAGCTA 57.359 29.630 12.27 0.00 43.20 3.32
6284 7317 8.539117 AAGGCATTTAATTAATGGTCTTAGCT 57.461 30.769 12.27 0.00 43.20 3.32
6285 7318 9.599866 AAAAGGCATTTAATTAATGGTCTTAGC 57.400 29.630 13.59 4.52 43.20 3.09
6288 7321 9.791801 ACAAAAAGGCATTTAATTAATGGTCTT 57.208 25.926 0.00 9.46 43.20 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.