Multiple sequence alignment - TraesCS1A01G277600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G277600 chr1A 100.000 4203 0 0 1 4203 473031287 473035489 0.000000e+00 7762.0
1 TraesCS1A01G277600 chr1A 96.241 133 5 0 3468 3600 12159812 12159680 7.080000e-53 219.0
2 TraesCS1A01G277600 chr1A 94.928 138 6 1 3466 3603 378182819 378182955 9.150000e-52 215.0
3 TraesCS1A01G277600 chr1A 95.652 92 4 0 2648 2739 532473087 532472996 9.410000e-32 148.0
4 TraesCS1A01G277600 chr1D 92.159 1760 75 23 938 2649 373418058 373419802 0.000000e+00 2427.0
5 TraesCS1A01G277600 chr1D 93.911 739 30 8 2728 3457 373419798 373420530 0.000000e+00 1101.0
6 TraesCS1A01G277600 chr1D 84.096 459 27 11 3763 4181 373420829 373421281 6.550000e-108 401.0
7 TraesCS1A01G277600 chr1D 90.741 108 6 4 2635 2741 197821556 197821660 1.580000e-29 141.0
8 TraesCS1A01G277600 chr1B 91.604 1727 76 30 978 2649 498683044 498684756 0.000000e+00 2322.0
9 TraesCS1A01G277600 chr1B 92.629 719 37 8 2758 3470 498684937 498685645 0.000000e+00 1020.0
10 TraesCS1A01G277600 chr1B 94.681 188 10 0 2728 2915 498684752 498684939 4.110000e-75 292.0
11 TraesCS1A01G277600 chr1B 93.814 97 6 0 2646 2742 26838052 26838148 3.390000e-31 147.0
12 TraesCS1A01G277600 chr1B 93.103 87 4 2 2474 2559 618697579 618697664 4.410000e-25 126.0
13 TraesCS1A01G277600 chr1B 86.607 112 9 5 2623 2732 613002091 613002198 7.380000e-23 119.0
14 TraesCS1A01G277600 chr6B 92.725 756 48 4 1 755 664201639 664202388 0.000000e+00 1085.0
15 TraesCS1A01G277600 chr6B 87.850 107 12 1 3627 3732 617173820 617173714 1.590000e-24 124.0
16 TraesCS1A01G277600 chr2A 92.308 767 53 5 1 765 552093554 552092792 0.000000e+00 1085.0
17 TraesCS1A01G277600 chrUn 92.460 756 53 4 1 755 86963773 86963021 0.000000e+00 1077.0
18 TraesCS1A01G277600 chr2D 89.309 767 77 5 1 766 147942266 147943028 0.000000e+00 957.0
19 TraesCS1A01G277600 chr2D 95.652 92 4 0 2648 2739 538026892 538026801 9.410000e-32 148.0
20 TraesCS1A01G277600 chr2D 94.595 37 1 1 785 821 609882873 609882908 5.870000e-04 56.5
21 TraesCS1A01G277600 chr3A 92.766 235 16 1 531 765 49683335 49683102 5.210000e-89 339.0
22 TraesCS1A01G277600 chr3A 94.326 141 7 1 3466 3606 686909957 686910096 9.150000e-52 215.0
23 TraesCS1A01G277600 chr3A 95.652 92 4 0 2648 2739 523731441 523731350 9.410000e-32 148.0
24 TraesCS1A01G277600 chr3A 85.714 119 12 4 3619 3734 608685161 608685045 2.050000e-23 121.0
25 TraesCS1A01G277600 chr3D 76.923 455 86 16 322 768 26591505 26591948 1.510000e-59 241.0
26 TraesCS1A01G277600 chr3D 84.100 239 34 4 528 764 67072976 67073212 1.180000e-55 228.0
27 TraesCS1A01G277600 chr3D 94.792 96 4 1 2647 2741 475298913 475298818 9.410000e-32 148.0
28 TraesCS1A01G277600 chr3D 86.239 109 14 1 3628 3735 9251201 9251093 2.650000e-22 117.0
29 TraesCS1A01G277600 chr2B 85.068 221 31 2 534 753 683592635 683592416 1.520000e-54 224.0
30 TraesCS1A01G277600 chr2B 95.652 138 5 1 3467 3604 89552501 89552365 1.970000e-53 220.0
31 TraesCS1A01G277600 chr3B 96.212 132 5 0 3464 3595 453164786 453164917 2.540000e-52 217.0
32 TraesCS1A01G277600 chr4A 95.522 134 5 1 3467 3600 513376010 513375878 3.290000e-51 213.0
33 TraesCS1A01G277600 chr4A 91.391 151 10 3 3469 3618 606364317 606364465 1.980000e-48 204.0
34 TraesCS1A01G277600 chr6A 94.203 138 8 0 3460 3597 594970521 594970384 1.180000e-50 211.0
35 TraesCS1A01G277600 chr6A 92.929 99 5 2 2646 2744 262052048 262052144 4.380000e-30 143.0
36 TraesCS1A01G277600 chr4D 75.162 463 107 8 306 764 401951704 401952162 1.180000e-50 211.0
37 TraesCS1A01G277600 chr4D 93.407 91 3 3 2474 2562 453044727 453044638 9.480000e-27 132.0
38 TraesCS1A01G277600 chr4D 87.387 111 13 1 3625 3734 392745314 392745204 4.410000e-25 126.0
39 TraesCS1A01G277600 chr5A 93.007 143 9 1 3461 3602 668160087 668159945 1.530000e-49 207.0
40 TraesCS1A01G277600 chr5A 86.726 113 14 1 3627 3738 294244909 294245021 1.590000e-24 124.0
41 TraesCS1A01G277600 chr5D 94.845 97 4 1 2639 2735 395699598 395699693 2.620000e-32 150.0
42 TraesCS1A01G277600 chr5D 85.965 114 14 2 3627 3738 220189570 220189683 2.050000e-23 121.0
43 TraesCS1A01G277600 chr5D 85.841 113 14 2 3628 3739 293784598 293784487 7.380000e-23 119.0
44 TraesCS1A01G277600 chr6D 92.929 99 5 2 2646 2744 221219314 221219410 4.380000e-30 143.0
45 TraesCS1A01G277600 chr7B 93.684 95 3 3 2467 2559 462734087 462733994 5.670000e-29 139.0
46 TraesCS1A01G277600 chr7B 88.182 110 12 1 3628 3736 570465257 570465366 3.410000e-26 130.0
47 TraesCS1A01G277600 chr7D 92.553 94 4 3 2471 2562 121937343 121937435 9.480000e-27 132.0
48 TraesCS1A01G277600 chr7D 94.253 87 3 2 2474 2559 446245005 446245090 9.480000e-27 132.0
49 TraesCS1A01G277600 chr7D 91.111 90 6 2 2473 2561 151326443 151326531 2.050000e-23 121.0
50 TraesCS1A01G277600 chr4B 88.073 109 12 1 3627 3734 482662780 482662672 1.230000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G277600 chr1A 473031287 473035489 4202 False 7762.000000 7762 100.000000 1 4203 1 chr1A.!!$F2 4202
1 TraesCS1A01G277600 chr1D 373418058 373421281 3223 False 1309.666667 2427 90.055333 938 4181 3 chr1D.!!$F2 3243
2 TraesCS1A01G277600 chr1B 498683044 498685645 2601 False 1211.333333 2322 92.971333 978 3470 3 chr1B.!!$F4 2492
3 TraesCS1A01G277600 chr6B 664201639 664202388 749 False 1085.000000 1085 92.725000 1 755 1 chr6B.!!$F1 754
4 TraesCS1A01G277600 chr2A 552092792 552093554 762 True 1085.000000 1085 92.308000 1 765 1 chr2A.!!$R1 764
5 TraesCS1A01G277600 chrUn 86963021 86963773 752 True 1077.000000 1077 92.460000 1 755 1 chrUn.!!$R1 754
6 TraesCS1A01G277600 chr2D 147942266 147943028 762 False 957.000000 957 89.309000 1 766 1 chr2D.!!$F1 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 924 0.460311 ACGGTTTATCTGAGCTCGGG 59.540 55.0 22.38 11.19 0.0 5.14 F
1022 1024 0.474184 ACTGACTGGGTTGGACTTGG 59.526 55.0 0.00 0.00 0.0 3.61 F
2645 2709 0.034574 ACACCATGGCCTTTATGCGA 60.035 50.0 13.04 0.00 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2626 2690 0.034574 TCGCATAAAGGCCATGGTGT 60.035 50.000 14.67 0.0 0.00 4.16 R
3003 3223 1.450134 TTAGCAGTGCGCCATGAGG 60.450 57.895 10.00 0.0 44.04 3.86 R
4139 4570 0.034896 AGCACGACGGACCTCAAATT 59.965 50.000 0.00 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.813443 CTGGTATGGAGGATTTGGTCTG 58.187 50.000 0.00 0.00 0.00 3.51
103 104 4.383226 GGAAGGAGATCCCAAGTGTAACTC 60.383 50.000 0.00 0.00 42.12 3.01
152 153 2.971598 GCTACTTGAGGCTGGCCCA 61.972 63.158 8.11 3.53 36.58 5.36
248 250 2.238898 AGTTGTTAGTACTCCATGGCCC 59.761 50.000 6.96 0.00 0.00 5.80
249 251 1.959710 TGTTAGTACTCCATGGCCCA 58.040 50.000 6.96 0.00 0.00 5.36
250 252 2.270858 TGTTAGTACTCCATGGCCCAA 58.729 47.619 6.96 0.00 0.00 4.12
253 255 1.072266 AGTACTCCATGGCCCAAACA 58.928 50.000 6.96 0.00 0.00 2.83
254 256 1.640670 AGTACTCCATGGCCCAAACAT 59.359 47.619 6.96 0.00 0.00 2.71
255 257 2.849943 AGTACTCCATGGCCCAAACATA 59.150 45.455 6.96 0.00 0.00 2.29
256 258 2.143876 ACTCCATGGCCCAAACATAC 57.856 50.000 6.96 0.00 0.00 2.39
257 259 1.357420 ACTCCATGGCCCAAACATACA 59.643 47.619 6.96 0.00 0.00 2.29
260 262 2.578480 TCCATGGCCCAAACATACACTA 59.422 45.455 6.96 0.00 0.00 2.74
324 326 2.189191 GATGGGTGAGTGGCAGCAGA 62.189 60.000 0.00 0.00 46.67 4.26
364 366 2.494073 TGATGGGTCGGTAATTTTTGCC 59.506 45.455 0.00 0.00 0.00 4.52
390 392 7.345192 GCATATCGGTATTTGTTCAACTGTAG 58.655 38.462 0.00 0.00 0.00 2.74
401 403 5.062528 TGTTCAACTGTAGTGATGCATTGA 58.937 37.500 0.00 0.00 0.00 2.57
458 460 7.875554 TGACATTAGCTATTCAACACTGTAACA 59.124 33.333 0.00 0.00 0.00 2.41
481 483 2.422519 GCCCATCATTGTCCAGTCAGAT 60.423 50.000 0.00 0.00 0.00 2.90
487 489 3.198635 TCATTGTCCAGTCAGATTCCTCC 59.801 47.826 0.00 0.00 0.00 4.30
732 734 5.925509 TCTGGATTGTAACCCTATGCTTAC 58.074 41.667 0.00 0.00 0.00 2.34
756 758 5.012239 GGAATAAAACTCTTTTACCCCCGT 58.988 41.667 0.00 0.00 37.88 5.28
759 761 7.148188 GGAATAAAACTCTTTTACCCCCGTAAG 60.148 40.741 0.00 0.00 37.88 2.34
797 799 9.409312 TCTAAAAATTACACTGTTTACGATCGA 57.591 29.630 24.34 2.23 0.00 3.59
800 802 9.887406 AAAAATTACACTGTTTACGATCGATTT 57.113 25.926 24.34 9.44 0.00 2.17
801 803 9.887406 AAAATTACACTGTTTACGATCGATTTT 57.113 25.926 24.34 14.64 0.00 1.82
805 807 7.230466 ACACTGTTTACGATCGATTTTATCC 57.770 36.000 24.34 1.59 0.00 2.59
806 808 7.039882 ACACTGTTTACGATCGATTTTATCCT 58.960 34.615 24.34 0.00 0.00 3.24
807 809 7.548075 ACACTGTTTACGATCGATTTTATCCTT 59.452 33.333 24.34 0.00 0.00 3.36
808 810 8.388103 CACTGTTTACGATCGATTTTATCCTTT 58.612 33.333 24.34 0.00 0.00 3.11
809 811 8.943002 ACTGTTTACGATCGATTTTATCCTTTT 58.057 29.630 24.34 0.00 0.00 2.27
810 812 9.769093 CTGTTTACGATCGATTTTATCCTTTTT 57.231 29.630 24.34 0.00 0.00 1.94
814 816 7.852971 ACGATCGATTTTATCCTTTTTACCA 57.147 32.000 24.34 0.00 0.00 3.25
815 817 8.446599 ACGATCGATTTTATCCTTTTTACCAT 57.553 30.769 24.34 0.00 0.00 3.55
816 818 8.342634 ACGATCGATTTTATCCTTTTTACCATG 58.657 33.333 24.34 0.00 0.00 3.66
817 819 8.556194 CGATCGATTTTATCCTTTTTACCATGA 58.444 33.333 10.26 0.00 0.00 3.07
818 820 9.884465 GATCGATTTTATCCTTTTTACCATGAG 57.116 33.333 0.00 0.00 0.00 2.90
819 821 7.703328 TCGATTTTATCCTTTTTACCATGAGC 58.297 34.615 0.00 0.00 0.00 4.26
820 822 7.556275 TCGATTTTATCCTTTTTACCATGAGCT 59.444 33.333 0.00 0.00 0.00 4.09
821 823 7.857885 CGATTTTATCCTTTTTACCATGAGCTC 59.142 37.037 6.82 6.82 0.00 4.09
822 824 8.829373 ATTTTATCCTTTTTACCATGAGCTCT 57.171 30.769 16.19 0.00 0.00 4.09
823 825 7.865706 TTTATCCTTTTTACCATGAGCTCTC 57.134 36.000 16.19 0.00 0.00 3.20
824 826 4.908601 TCCTTTTTACCATGAGCTCTCA 57.091 40.909 16.19 1.67 44.59 3.27
825 827 5.241403 TCCTTTTTACCATGAGCTCTCAA 57.759 39.130 16.19 0.00 43.58 3.02
826 828 5.630121 TCCTTTTTACCATGAGCTCTCAAA 58.370 37.500 16.19 5.15 43.58 2.69
827 829 5.473504 TCCTTTTTACCATGAGCTCTCAAAC 59.526 40.000 16.19 0.00 43.58 2.93
828 830 5.474876 CCTTTTTACCATGAGCTCTCAAACT 59.525 40.000 16.19 0.00 43.58 2.66
829 831 6.015940 CCTTTTTACCATGAGCTCTCAAACTT 60.016 38.462 16.19 0.00 43.58 2.66
830 832 7.174946 CCTTTTTACCATGAGCTCTCAAACTTA 59.825 37.037 16.19 0.00 43.58 2.24
831 833 8.458573 TTTTTACCATGAGCTCTCAAACTTAA 57.541 30.769 16.19 1.02 43.58 1.85
832 834 7.435068 TTTACCATGAGCTCTCAAACTTAAC 57.565 36.000 16.19 0.00 43.58 2.01
833 835 4.973168 ACCATGAGCTCTCAAACTTAACA 58.027 39.130 16.19 0.00 43.58 2.41
834 836 5.376625 ACCATGAGCTCTCAAACTTAACAA 58.623 37.500 16.19 0.00 43.58 2.83
835 837 5.827797 ACCATGAGCTCTCAAACTTAACAAA 59.172 36.000 16.19 0.00 43.58 2.83
836 838 6.321181 ACCATGAGCTCTCAAACTTAACAAAA 59.679 34.615 16.19 0.00 43.58 2.44
837 839 7.147915 ACCATGAGCTCTCAAACTTAACAAAAA 60.148 33.333 16.19 0.00 43.58 1.94
838 840 7.869429 CCATGAGCTCTCAAACTTAACAAAAAT 59.131 33.333 16.19 0.00 43.58 1.82
839 841 9.252962 CATGAGCTCTCAAACTTAACAAAAATT 57.747 29.630 16.19 0.00 43.58 1.82
840 842 9.822185 ATGAGCTCTCAAACTTAACAAAAATTT 57.178 25.926 16.19 0.00 43.58 1.82
841 843 9.086336 TGAGCTCTCAAACTTAACAAAAATTTG 57.914 29.630 16.19 4.40 39.18 2.32
842 844 7.909267 AGCTCTCAAACTTAACAAAAATTTGC 58.091 30.769 5.82 0.00 41.79 3.68
843 845 7.548780 AGCTCTCAAACTTAACAAAAATTTGCA 59.451 29.630 5.82 0.00 41.79 4.08
844 846 8.337532 GCTCTCAAACTTAACAAAAATTTGCAT 58.662 29.630 5.82 0.00 41.79 3.96
845 847 9.853921 CTCTCAAACTTAACAAAAATTTGCATC 57.146 29.630 5.82 0.00 41.79 3.91
846 848 8.538856 TCTCAAACTTAACAAAAATTTGCATCG 58.461 29.630 5.82 0.00 41.79 3.84
847 849 8.412608 TCAAACTTAACAAAAATTTGCATCGA 57.587 26.923 5.82 0.00 41.79 3.59
848 850 8.538856 TCAAACTTAACAAAAATTTGCATCGAG 58.461 29.630 5.82 1.23 41.79 4.04
849 851 8.327429 CAAACTTAACAAAAATTTGCATCGAGT 58.673 29.630 5.82 1.75 41.79 4.18
850 852 9.522804 AAACTTAACAAAAATTTGCATCGAGTA 57.477 25.926 5.82 0.00 41.79 2.59
851 853 8.502161 ACTTAACAAAAATTTGCATCGAGTAC 57.498 30.769 5.82 0.00 41.79 2.73
852 854 8.132362 ACTTAACAAAAATTTGCATCGAGTACA 58.868 29.630 5.82 0.00 41.79 2.90
853 855 9.128107 CTTAACAAAAATTTGCATCGAGTACAT 57.872 29.630 5.82 0.00 41.79 2.29
854 856 6.932901 ACAAAAATTTGCATCGAGTACATG 57.067 33.333 5.82 0.00 41.79 3.21
855 857 5.345741 ACAAAAATTTGCATCGAGTACATGC 59.654 36.000 9.18 9.18 45.92 4.06
862 864 2.848302 GCATCGAGTACATGCAAAAAGC 59.152 45.455 10.82 0.00 45.19 3.51
880 882 2.460757 GCATCTTGCACCACCATTTT 57.539 45.000 0.00 0.00 44.26 1.82
881 883 2.769893 GCATCTTGCACCACCATTTTT 58.230 42.857 0.00 0.00 44.26 1.94
920 922 5.968387 ATTTTACGGTTTATCTGAGCTCG 57.032 39.130 9.64 4.19 0.00 5.03
921 923 3.431922 TTACGGTTTATCTGAGCTCGG 57.568 47.619 16.98 16.98 0.00 4.63
922 924 0.460311 ACGGTTTATCTGAGCTCGGG 59.540 55.000 22.38 11.19 0.00 5.14
923 925 0.876342 CGGTTTATCTGAGCTCGGGC 60.876 60.000 22.38 0.00 39.06 6.13
933 935 3.134127 GCTCGGGCTGCGGATTTT 61.134 61.111 0.00 0.00 35.22 1.82
934 936 2.793946 CTCGGGCTGCGGATTTTG 59.206 61.111 0.00 0.00 0.00 2.44
935 937 1.745115 CTCGGGCTGCGGATTTTGA 60.745 57.895 0.00 0.00 0.00 2.69
936 938 1.709147 CTCGGGCTGCGGATTTTGAG 61.709 60.000 0.00 0.00 0.00 3.02
1022 1024 0.474184 ACTGACTGGGTTGGACTTGG 59.526 55.000 0.00 0.00 0.00 3.61
1171 1186 5.680151 GCAGCTCGAAGGTAGAGTATTCTTT 60.680 44.000 0.00 0.00 37.99 2.52
1180 1210 5.900699 AGGTAGAGTATTCTTTTCTCCTCCC 59.099 44.000 0.00 0.00 34.79 4.30
1201 1231 0.841289 CTCCCCCTCTCTACTCGACT 59.159 60.000 0.00 0.00 0.00 4.18
1243 1273 2.131183 CGGGCTTGAGATCGATTTCTC 58.869 52.381 16.09 12.44 42.10 2.87
1320 1350 1.120530 TTTCCTCTAGGACGGATGCC 58.879 55.000 0.00 0.00 45.39 4.40
1349 1379 2.678336 GTCCAGCTTGTTAAGGATTCGG 59.322 50.000 0.00 0.00 31.91 4.30
1375 1405 6.028146 TCTGCGTGTTGGATTACTACTTTA 57.972 37.500 0.00 0.00 0.00 1.85
1376 1406 5.865552 TCTGCGTGTTGGATTACTACTTTAC 59.134 40.000 0.00 0.00 0.00 2.01
1377 1407 5.786311 TGCGTGTTGGATTACTACTTTACT 58.214 37.500 0.00 0.00 0.00 2.24
1413 1443 9.717892 AGTTTAGTTTCGAAGAACAAAATTCTC 57.282 29.630 0.00 0.00 45.90 2.87
1484 1514 6.039717 TGTTAATTAAGCATGCCTCTGAATCC 59.960 38.462 15.66 0.00 0.00 3.01
1572 1602 8.763601 AGAGAGTAGTAAGGAGCATGTTAATTT 58.236 33.333 0.00 0.00 0.00 1.82
1603 1637 8.073467 AGAAATTATCCTACTAGGCTGATAGC 57.927 38.462 0.00 0.00 41.46 2.97
1642 1676 2.815647 GCTTCCTAGCGCTTGCGT 60.816 61.111 18.68 0.00 45.69 5.24
1716 1753 4.380843 TGGGTGGCTTGTATAATATGGG 57.619 45.455 0.00 0.00 0.00 4.00
1754 1799 4.136796 TGTGTTGTTCATCTCTTTGGAGG 58.863 43.478 0.00 0.00 39.86 4.30
1790 1835 3.760684 AGGGTTGCTCTGCTATTTCTTTG 59.239 43.478 0.00 0.00 0.00 2.77
1798 1843 6.095860 TGCTCTGCTATTTCTTTGTTATGCAT 59.904 34.615 3.79 3.79 0.00 3.96
1850 1900 8.872845 CCTAATTACCTTGCAAGCATTTTAAAG 58.127 33.333 21.43 11.26 0.00 1.85
1852 1902 4.953940 ACCTTGCAAGCATTTTAAAGGA 57.046 36.364 21.43 0.00 38.04 3.36
1853 1903 4.631131 ACCTTGCAAGCATTTTAAAGGAC 58.369 39.130 21.43 0.00 38.04 3.85
1854 1904 3.996363 CCTTGCAAGCATTTTAAAGGACC 59.004 43.478 21.43 0.00 37.02 4.46
2099 2149 4.650754 ACAGGACGGTAGTAATGTGATC 57.349 45.455 0.00 0.00 30.71 2.92
2348 2398 6.480981 GGCATGCATTATTTTGAGCTTGTATT 59.519 34.615 21.36 0.00 35.39 1.89
2370 2420 6.675413 TTAAGTACTAACTGTGGTGGATGT 57.325 37.500 0.00 0.00 35.62 3.06
2391 2441 6.339587 TGTTTTTCTCCAGTTTGTTGTCTT 57.660 33.333 0.00 0.00 0.00 3.01
2410 2460 5.415701 TGTCTTTTGGGACTTCTGATTATGC 59.584 40.000 0.00 0.00 37.16 3.14
2411 2461 5.415701 GTCTTTTGGGACTTCTGATTATGCA 59.584 40.000 0.00 0.00 33.81 3.96
2450 2500 6.599356 TGCTAGACTATAAACACCTGAACA 57.401 37.500 0.00 0.00 0.00 3.18
2499 2550 4.905456 TCCCTCCGATCCATATTACTTGTT 59.095 41.667 0.00 0.00 0.00 2.83
2543 2605 7.092079 TGTACTAAAGCTGCGACAAGTAATAA 58.908 34.615 8.16 0.00 0.00 1.40
2544 2606 7.762615 TGTACTAAAGCTGCGACAAGTAATAAT 59.237 33.333 8.16 0.00 0.00 1.28
2546 2608 4.882671 AAGCTGCGACAAGTAATAATGG 57.117 40.909 0.00 0.00 0.00 3.16
2547 2609 4.137116 AGCTGCGACAAGTAATAATGGA 57.863 40.909 0.00 0.00 0.00 3.41
2604 2667 1.230635 CCTTCCTTGCACACTGACCG 61.231 60.000 0.00 0.00 0.00 4.79
2608 2671 1.346395 TCCTTGCACACTGACCGTATT 59.654 47.619 0.00 0.00 0.00 1.89
2609 2672 2.151202 CCTTGCACACTGACCGTATTT 58.849 47.619 0.00 0.00 0.00 1.40
2610 2673 2.552315 CCTTGCACACTGACCGTATTTT 59.448 45.455 0.00 0.00 0.00 1.82
2611 2674 3.554524 CTTGCACACTGACCGTATTTTG 58.445 45.455 0.00 0.00 0.00 2.44
2612 2675 1.265635 TGCACACTGACCGTATTTTGC 59.734 47.619 0.00 0.00 0.00 3.68
2626 2690 5.398169 CGTATTTTGCTCACCTATTTTGCA 58.602 37.500 0.00 0.00 0.00 4.08
2644 2708 0.101040 CACACCATGGCCTTTATGCG 59.899 55.000 13.04 0.00 0.00 4.73
2645 2709 0.034574 ACACCATGGCCTTTATGCGA 60.035 50.000 13.04 0.00 0.00 5.10
2646 2710 0.664761 CACCATGGCCTTTATGCGAG 59.335 55.000 13.04 0.00 0.00 5.03
2647 2711 0.255890 ACCATGGCCTTTATGCGAGT 59.744 50.000 13.04 0.00 0.00 4.18
2648 2712 1.488812 ACCATGGCCTTTATGCGAGTA 59.511 47.619 13.04 0.00 0.00 2.59
2649 2713 1.873591 CCATGGCCTTTATGCGAGTAC 59.126 52.381 3.32 0.00 0.00 2.73
2650 2714 2.485479 CCATGGCCTTTATGCGAGTACT 60.485 50.000 3.32 0.00 0.00 2.73
2651 2715 2.596904 TGGCCTTTATGCGAGTACTC 57.403 50.000 13.18 13.18 0.00 2.59
2652 2716 1.138266 TGGCCTTTATGCGAGTACTCC 59.862 52.381 17.23 10.38 0.00 3.85
2653 2717 1.540580 GGCCTTTATGCGAGTACTCCC 60.541 57.143 17.23 8.99 0.00 4.30
2654 2718 1.413077 GCCTTTATGCGAGTACTCCCT 59.587 52.381 17.23 4.69 0.00 4.20
2655 2719 2.546162 GCCTTTATGCGAGTACTCCCTC 60.546 54.545 17.23 7.31 0.00 4.30
2656 2720 2.959707 CCTTTATGCGAGTACTCCCTCT 59.040 50.000 17.23 3.28 0.00 3.69
2657 2721 3.243569 CCTTTATGCGAGTACTCCCTCTG 60.244 52.174 17.23 3.91 0.00 3.35
2658 2722 2.730934 TATGCGAGTACTCCCTCTGT 57.269 50.000 17.23 0.90 0.00 3.41
2659 2723 2.730934 ATGCGAGTACTCCCTCTGTA 57.269 50.000 17.23 2.78 0.00 2.74
2660 2724 2.502142 TGCGAGTACTCCCTCTGTAA 57.498 50.000 17.23 0.00 0.00 2.41
2661 2725 2.799017 TGCGAGTACTCCCTCTGTAAA 58.201 47.619 17.23 0.00 0.00 2.01
2662 2726 2.490903 TGCGAGTACTCCCTCTGTAAAC 59.509 50.000 17.23 0.00 0.00 2.01
2663 2727 2.754002 GCGAGTACTCCCTCTGTAAACT 59.246 50.000 17.23 0.00 0.00 2.66
2664 2728 3.944015 GCGAGTACTCCCTCTGTAAACTA 59.056 47.826 17.23 0.00 0.00 2.24
2665 2729 4.397417 GCGAGTACTCCCTCTGTAAACTAA 59.603 45.833 17.23 0.00 0.00 2.24
2666 2730 5.067544 GCGAGTACTCCCTCTGTAAACTAAT 59.932 44.000 17.23 0.00 0.00 1.73
2667 2731 6.261826 GCGAGTACTCCCTCTGTAAACTAATA 59.738 42.308 17.23 0.00 0.00 0.98
2668 2732 7.040548 GCGAGTACTCCCTCTGTAAACTAATAT 60.041 40.741 17.23 0.00 0.00 1.28
2669 2733 9.499479 CGAGTACTCCCTCTGTAAACTAATATA 57.501 37.037 17.23 0.00 0.00 0.86
2674 2738 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2675 2739 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
2676 2740 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
2705 2769 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2706 2770 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2707 2771 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2708 2772 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2709 2773 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2710 2774 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2711 2775 9.224058 CTAAAGTAGTGATCTAAACGCTCTTAC 57.776 37.037 0.00 0.00 0.00 2.34
2712 2776 6.754702 AGTAGTGATCTAAACGCTCTTACA 57.245 37.500 0.00 0.00 0.00 2.41
2713 2777 7.336161 AGTAGTGATCTAAACGCTCTTACAT 57.664 36.000 0.00 0.00 0.00 2.29
2714 2778 7.773149 AGTAGTGATCTAAACGCTCTTACATT 58.227 34.615 0.00 0.00 0.00 2.71
2715 2779 8.900781 AGTAGTGATCTAAACGCTCTTACATTA 58.099 33.333 0.00 0.00 0.00 1.90
2716 2780 9.171701 GTAGTGATCTAAACGCTCTTACATTAG 57.828 37.037 0.00 0.00 0.00 1.73
2717 2781 7.773149 AGTGATCTAAACGCTCTTACATTAGT 58.227 34.615 0.00 0.00 0.00 2.24
2718 2782 8.251721 AGTGATCTAAACGCTCTTACATTAGTT 58.748 33.333 0.00 0.00 0.00 2.24
2719 2783 8.870879 GTGATCTAAACGCTCTTACATTAGTTT 58.129 33.333 0.00 0.00 36.11 2.66
2722 2786 9.865321 ATCTAAACGCTCTTACATTAGTTTACA 57.135 29.630 0.00 0.00 34.29 2.41
2723 2787 9.350357 TCTAAACGCTCTTACATTAGTTTACAG 57.650 33.333 0.00 0.00 34.29 2.74
2724 2788 9.350357 CTAAACGCTCTTACATTAGTTTACAGA 57.650 33.333 0.00 0.00 34.29 3.41
2725 2789 7.813852 AACGCTCTTACATTAGTTTACAGAG 57.186 36.000 0.00 0.00 0.00 3.35
2726 2790 6.331061 ACGCTCTTACATTAGTTTACAGAGG 58.669 40.000 0.00 0.00 0.00 3.69
2767 2986 2.759191 TGAATGCACACTCAGACAGAC 58.241 47.619 0.00 0.00 0.00 3.51
2787 3006 4.767255 GTGCCCCTGCTCCTGACG 62.767 72.222 0.00 0.00 38.71 4.35
2857 3077 6.820470 TTTTTGTTACTATTGTGCTGTTGC 57.180 33.333 0.00 0.00 40.20 4.17
2943 3163 7.724305 TTTGTACAGTAATCACCAGAGTTTC 57.276 36.000 0.00 0.00 0.00 2.78
2946 3166 3.910627 ACAGTAATCACCAGAGTTTCCCT 59.089 43.478 0.00 0.00 0.00 4.20
2951 3171 4.828072 ATCACCAGAGTTTCCCTAGTTC 57.172 45.455 0.00 0.00 0.00 3.01
2953 3173 1.900486 ACCAGAGTTTCCCTAGTTCCG 59.100 52.381 0.00 0.00 0.00 4.30
2955 3175 2.565834 CCAGAGTTTCCCTAGTTCCGAA 59.434 50.000 0.00 0.00 0.00 4.30
2960 3180 4.031611 AGTTTCCCTAGTTCCGAAGCTAT 58.968 43.478 0.00 0.00 0.00 2.97
2983 3203 5.932455 TGGTTACCTTGTAACAGCTACTTT 58.068 37.500 16.41 0.00 0.00 2.66
2984 3204 5.761234 TGGTTACCTTGTAACAGCTACTTTG 59.239 40.000 16.41 0.00 0.00 2.77
3003 3223 9.294030 CTACTTTGATTGCCTTAATTCAACATC 57.706 33.333 0.00 0.00 0.00 3.06
3061 3282 1.450312 GCAGCCAGGTTATGAGCGT 60.450 57.895 0.00 0.00 32.31 5.07
3236 3460 8.718734 ACTCGTTGTTAAGAATAATCTGAAACC 58.281 33.333 4.62 0.00 35.59 3.27
3258 3482 1.718396 TTGCTCGAGATGCTCTGTTG 58.282 50.000 18.75 0.00 0.00 3.33
3267 3491 1.487976 GATGCTCTGTTGGATCCCTGA 59.512 52.381 9.90 3.44 0.00 3.86
3268 3492 1.588239 TGCTCTGTTGGATCCCTGAT 58.412 50.000 9.90 0.00 0.00 2.90
3269 3493 1.211212 TGCTCTGTTGGATCCCTGATG 59.789 52.381 9.90 0.00 0.00 3.07
3270 3494 1.487976 GCTCTGTTGGATCCCTGATGA 59.512 52.381 9.90 0.50 0.00 2.92
3371 3595 2.862921 GCGTGAGAAGACTCGGTTTTCT 60.863 50.000 8.78 8.78 45.25 2.52
3387 3611 0.179234 TTCTGCCGTGGAAGTTGACA 59.821 50.000 0.00 0.00 0.00 3.58
3399 3623 3.354397 GAAGTTGACAACTGTTTCGCTG 58.646 45.455 21.24 0.00 41.91 5.18
3400 3624 2.627945 AGTTGACAACTGTTTCGCTGA 58.372 42.857 19.96 0.00 41.01 4.26
3470 3699 3.921677 TGTGCCTTGCTGTTACTACTAC 58.078 45.455 0.00 0.00 0.00 2.73
3471 3700 3.576982 TGTGCCTTGCTGTTACTACTACT 59.423 43.478 0.00 0.00 0.00 2.57
3472 3701 4.174762 GTGCCTTGCTGTTACTACTACTC 58.825 47.826 0.00 0.00 0.00 2.59
3473 3702 3.194968 TGCCTTGCTGTTACTACTACTCC 59.805 47.826 0.00 0.00 0.00 3.85
3474 3703 3.430513 GCCTTGCTGTTACTACTACTCCC 60.431 52.174 0.00 0.00 0.00 4.30
3475 3704 4.024670 CCTTGCTGTTACTACTACTCCCT 58.975 47.826 0.00 0.00 0.00 4.20
3476 3705 4.098196 CCTTGCTGTTACTACTACTCCCTC 59.902 50.000 0.00 0.00 0.00 4.30
3477 3706 3.629087 TGCTGTTACTACTACTCCCTCC 58.371 50.000 0.00 0.00 0.00 4.30
3478 3707 3.010920 TGCTGTTACTACTACTCCCTCCA 59.989 47.826 0.00 0.00 0.00 3.86
3479 3708 4.216708 GCTGTTACTACTACTCCCTCCAT 58.783 47.826 0.00 0.00 0.00 3.41
3480 3709 4.650131 GCTGTTACTACTACTCCCTCCATT 59.350 45.833 0.00 0.00 0.00 3.16
3481 3710 5.221283 GCTGTTACTACTACTCCCTCCATTC 60.221 48.000 0.00 0.00 0.00 2.67
3482 3711 5.206587 TGTTACTACTACTCCCTCCATTCC 58.793 45.833 0.00 0.00 0.00 3.01
3483 3712 2.946785 ACTACTACTCCCTCCATTCCG 58.053 52.381 0.00 0.00 0.00 4.30
3484 3713 2.512896 ACTACTACTCCCTCCATTCCGA 59.487 50.000 0.00 0.00 0.00 4.55
3485 3714 2.544844 ACTACTCCCTCCATTCCGAA 57.455 50.000 0.00 0.00 0.00 4.30
3486 3715 3.047695 ACTACTCCCTCCATTCCGAAT 57.952 47.619 0.00 0.00 0.00 3.34
3487 3716 3.385115 ACTACTCCCTCCATTCCGAATT 58.615 45.455 0.00 0.00 0.00 2.17
3488 3717 4.553678 ACTACTCCCTCCATTCCGAATTA 58.446 43.478 0.00 0.00 0.00 1.40
3489 3718 3.840124 ACTCCCTCCATTCCGAATTAC 57.160 47.619 0.00 0.00 0.00 1.89
3490 3719 3.385115 ACTCCCTCCATTCCGAATTACT 58.615 45.455 0.00 0.00 0.00 2.24
3491 3720 3.780850 ACTCCCTCCATTCCGAATTACTT 59.219 43.478 0.00 0.00 0.00 2.24
3492 3721 4.130118 CTCCCTCCATTCCGAATTACTTG 58.870 47.826 0.00 0.00 0.00 3.16
3493 3722 3.521937 TCCCTCCATTCCGAATTACTTGT 59.478 43.478 0.00 0.00 0.00 3.16
3494 3723 4.018779 TCCCTCCATTCCGAATTACTTGTT 60.019 41.667 0.00 0.00 0.00 2.83
3495 3724 4.705023 CCCTCCATTCCGAATTACTTGTTT 59.295 41.667 0.00 0.00 0.00 2.83
3496 3725 5.185056 CCCTCCATTCCGAATTACTTGTTTT 59.815 40.000 0.00 0.00 0.00 2.43
3497 3726 6.376018 CCCTCCATTCCGAATTACTTGTTTTA 59.624 38.462 0.00 0.00 0.00 1.52
3498 3727 7.415206 CCCTCCATTCCGAATTACTTGTTTTAG 60.415 40.741 0.00 0.00 0.00 1.85
3499 3728 7.335924 CCTCCATTCCGAATTACTTGTTTTAGA 59.664 37.037 0.00 0.00 0.00 2.10
3500 3729 8.801882 TCCATTCCGAATTACTTGTTTTAGAT 57.198 30.769 0.00 0.00 0.00 1.98
3501 3730 9.238368 TCCATTCCGAATTACTTGTTTTAGATT 57.762 29.630 0.00 0.00 0.00 2.40
3502 3731 9.855021 CCATTCCGAATTACTTGTTTTAGATTT 57.145 29.630 0.00 0.00 0.00 2.17
3505 3734 9.887406 TTCCGAATTACTTGTTTTAGATTTGTC 57.113 29.630 0.00 0.00 0.00 3.18
3506 3735 9.058174 TCCGAATTACTTGTTTTAGATTTGTCA 57.942 29.630 0.00 0.00 0.00 3.58
3507 3736 9.672086 CCGAATTACTTGTTTTAGATTTGTCAA 57.328 29.630 0.00 0.00 0.00 3.18
3514 3743 8.504005 ACTTGTTTTAGATTTGTCAAGATACGG 58.496 33.333 9.21 0.00 36.70 4.02
3515 3744 8.610248 TTGTTTTAGATTTGTCAAGATACGGA 57.390 30.769 0.00 0.00 0.00 4.69
3516 3745 8.251750 TGTTTTAGATTTGTCAAGATACGGAG 57.748 34.615 0.00 0.00 0.00 4.63
3517 3746 7.333423 TGTTTTAGATTTGTCAAGATACGGAGG 59.667 37.037 0.00 0.00 0.00 4.30
3518 3747 6.540438 TTAGATTTGTCAAGATACGGAGGT 57.460 37.500 0.00 0.00 0.00 3.85
3519 3748 7.649533 TTAGATTTGTCAAGATACGGAGGTA 57.350 36.000 0.00 0.00 0.00 3.08
3520 3749 6.732896 AGATTTGTCAAGATACGGAGGTAT 57.267 37.500 0.00 0.00 42.01 2.73
3533 3762 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
3534 3763 8.874744 ATACGGAGGTATCTAGCACTAAAATA 57.125 34.615 0.00 0.00 34.18 1.40
3535 3764 7.592885 ACGGAGGTATCTAGCACTAAAATAA 57.407 36.000 0.00 0.00 0.00 1.40
3536 3765 7.659186 ACGGAGGTATCTAGCACTAAAATAAG 58.341 38.462 0.00 0.00 0.00 1.73
3537 3766 7.287235 ACGGAGGTATCTAGCACTAAAATAAGT 59.713 37.037 0.00 0.00 0.00 2.24
3538 3767 7.808856 CGGAGGTATCTAGCACTAAAATAAGTC 59.191 40.741 0.00 0.00 0.00 3.01
3539 3768 8.862085 GGAGGTATCTAGCACTAAAATAAGTCT 58.138 37.037 0.00 0.00 0.00 3.24
3550 3779 9.130312 GCACTAAAATAAGTCTAGATACATCCG 57.870 37.037 0.00 0.00 0.00 4.18
3566 3795 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
3567 3796 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
3568 3797 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
3569 3798 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
3570 3799 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
3571 3800 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
3572 3801 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
3573 3802 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
3574 3803 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
3575 3804 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
3576 3805 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
3578 3807 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
3579 3808 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
3580 3809 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
3581 3810 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
3582 3811 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
3583 3812 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
3584 3813 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
3601 3830 4.797800 GGAACGGAGGAAGTAGTTTACT 57.202 45.455 0.00 0.00 41.73 2.24
3602 3831 5.904362 GGAACGGAGGAAGTAGTTTACTA 57.096 43.478 0.00 0.00 38.26 1.82
3603 3832 6.272822 GGAACGGAGGAAGTAGTTTACTAA 57.727 41.667 0.00 0.00 38.26 2.24
3604 3833 6.871844 GGAACGGAGGAAGTAGTTTACTAAT 58.128 40.000 0.00 0.00 38.26 1.73
3605 3834 8.000780 GGAACGGAGGAAGTAGTTTACTAATA 57.999 38.462 0.00 0.00 38.26 0.98
3606 3835 7.918033 GGAACGGAGGAAGTAGTTTACTAATAC 59.082 40.741 0.00 0.00 38.26 1.89
3607 3836 7.340122 ACGGAGGAAGTAGTTTACTAATACC 57.660 40.000 0.00 0.00 38.26 2.73
3608 3837 7.122048 ACGGAGGAAGTAGTTTACTAATACCT 58.878 38.462 8.64 8.64 38.26 3.08
3609 3838 7.284261 ACGGAGGAAGTAGTTTACTAATACCTC 59.716 40.741 18.59 18.59 40.27 3.85
3610 3839 7.501892 CGGAGGAAGTAGTTTACTAATACCTCT 59.498 40.741 22.09 8.28 40.51 3.69
3611 3840 8.631797 GGAGGAAGTAGTTTACTAATACCTCTG 58.368 40.741 22.09 0.00 40.51 3.35
3612 3841 9.187996 GAGGAAGTAGTTTACTAATACCTCTGT 57.812 37.037 19.05 0.00 39.28 3.41
3638 3867 7.440198 AGTTTAATACTTAATACTCCCTCCGC 58.560 38.462 0.00 0.00 31.29 5.54
3639 3868 4.886496 AATACTTAATACTCCCTCCGCC 57.114 45.455 0.00 0.00 0.00 6.13
3641 3870 1.062352 ACTTAATACTCCCTCCGCCCT 60.062 52.381 0.00 0.00 0.00 5.19
3642 3871 1.344763 CTTAATACTCCCTCCGCCCTG 59.655 57.143 0.00 0.00 0.00 4.45
3643 3872 0.559205 TAATACTCCCTCCGCCCTGA 59.441 55.000 0.00 0.00 0.00 3.86
3645 3874 0.104934 ATACTCCCTCCGCCCTGAAT 60.105 55.000 0.00 0.00 0.00 2.57
3647 3876 0.326238 ACTCCCTCCGCCCTGAATTA 60.326 55.000 0.00 0.00 0.00 1.40
3649 3878 1.421646 CTCCCTCCGCCCTGAATTATT 59.578 52.381 0.00 0.00 0.00 1.40
3650 3879 1.850345 TCCCTCCGCCCTGAATTATTT 59.150 47.619 0.00 0.00 0.00 1.40
3651 3880 1.956477 CCCTCCGCCCTGAATTATTTG 59.044 52.381 0.00 0.00 0.00 2.32
3652 3881 2.654863 CCTCCGCCCTGAATTATTTGT 58.345 47.619 0.00 0.00 0.00 2.83
3654 3883 2.285083 TCCGCCCTGAATTATTTGTCG 58.715 47.619 0.00 0.00 0.00 4.35
3657 3886 3.247648 CCGCCCTGAATTATTTGTCGTAG 59.752 47.826 0.00 0.00 0.00 3.51
3659 3888 4.569162 CGCCCTGAATTATTTGTCGTAGAA 59.431 41.667 0.00 0.00 39.69 2.10
3660 3889 5.236478 CGCCCTGAATTATTTGTCGTAGAAT 59.764 40.000 0.00 0.00 39.69 2.40
3661 3890 6.430451 GCCCTGAATTATTTGTCGTAGAATG 58.570 40.000 0.00 0.00 39.69 2.67
3662 3891 6.513393 GCCCTGAATTATTTGTCGTAGAATGG 60.513 42.308 0.00 0.00 39.69 3.16
3663 3892 6.765989 CCCTGAATTATTTGTCGTAGAATGGA 59.234 38.462 0.00 0.00 39.69 3.41
3665 3894 8.285394 CCTGAATTATTTGTCGTAGAATGGATG 58.715 37.037 0.00 0.00 39.69 3.51
3666 3895 8.731275 TGAATTATTTGTCGTAGAATGGATGT 57.269 30.769 0.00 0.00 39.69 3.06
3667 3896 9.825109 TGAATTATTTGTCGTAGAATGGATGTA 57.175 29.630 0.00 0.00 39.69 2.29
3673 3902 8.459911 TTTGTCGTAGAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
3674 3903 8.459911 TTGTCGTAGAATGGATGTATCTAGAA 57.540 34.615 0.00 0.00 39.69 2.10
3675 3904 7.872881 TGTCGTAGAATGGATGTATCTAGAAC 58.127 38.462 0.00 0.00 39.69 3.01
3678 3907 9.788889 TCGTAGAATGGATGTATCTAGAACTAA 57.211 33.333 0.00 0.00 0.00 2.24
3721 4112 9.816354 ATCCATTTCTACAAAAATTAATTCGGG 57.184 29.630 0.10 0.00 0.00 5.14
3745 4136 4.454847 ACGTATGGAGTATATGTCAGGACG 59.545 45.833 0.00 0.00 36.95 4.79
3751 4142 6.103997 TGGAGTATATGTCAGGACGTTTTTC 58.896 40.000 0.00 0.00 0.00 2.29
3758 4149 3.536956 TCAGGACGTTTTTCTGACAGT 57.463 42.857 1.59 0.00 33.21 3.55
3759 4150 3.454375 TCAGGACGTTTTTCTGACAGTC 58.546 45.455 1.59 0.00 33.21 3.51
3760 4151 3.118920 TCAGGACGTTTTTCTGACAGTCA 60.119 43.478 2.48 2.48 33.21 3.41
3761 4152 3.809832 CAGGACGTTTTTCTGACAGTCAT 59.190 43.478 2.97 0.00 0.00 3.06
3762 4153 4.988540 CAGGACGTTTTTCTGACAGTCATA 59.011 41.667 2.97 0.00 0.00 2.15
3774 4165 9.778741 TTTCTGACAGTCATAGTGTCTAAAAAT 57.221 29.630 2.97 0.00 46.15 1.82
3809 4205 2.125773 ACGGAGGGAGTACTACTGTG 57.874 55.000 4.77 0.16 0.00 3.66
3812 4208 2.657143 GGAGGGAGTACTACTGTGGAG 58.343 57.143 4.77 0.00 0.00 3.86
3834 4236 3.746492 GGCACTTTCTTACTACTGGTGTG 59.254 47.826 0.00 0.00 0.00 3.82
3846 4248 0.615331 CTGGTGTGGTATCAGGTGCT 59.385 55.000 0.00 0.00 33.68 4.40
3878 4282 0.865111 CGTCGACATGCAAACCTTGA 59.135 50.000 17.16 0.00 0.00 3.02
3896 4300 3.403558 GGTGAGGAGCCCCTGGTC 61.404 72.222 0.00 0.00 44.53 4.02
3897 4301 2.284995 GTGAGGAGCCCCTGGTCT 60.285 66.667 0.00 0.00 44.53 3.85
3904 4321 3.001406 GCCCCTGGTCTACGGTGT 61.001 66.667 0.00 0.00 0.00 4.16
3915 4332 2.842394 CTACGGTGTCCCAGCAGCTG 62.842 65.000 16.23 16.23 34.99 4.24
3926 4343 1.862827 CCAGCAGCTGCAAAGAAAAAC 59.137 47.619 38.24 7.01 45.16 2.43
3927 4344 2.542597 CAGCAGCTGCAAAGAAAAACA 58.457 42.857 38.24 0.00 45.16 2.83
3928 4345 3.128349 CAGCAGCTGCAAAGAAAAACAT 58.872 40.909 38.24 12.19 45.16 2.71
3940 4357 6.142320 GCAAAGAAAAACATTTCACGGTCTAG 59.858 38.462 4.34 0.00 33.53 2.43
3953 4370 1.590147 GTCTAGGGTGACGGTGGTG 59.410 63.158 0.00 0.00 0.00 4.17
3954 4371 1.608336 TCTAGGGTGACGGTGGTGG 60.608 63.158 0.00 0.00 0.00 4.61
3958 4375 2.047560 GGTGACGGTGGTGGCTAC 60.048 66.667 0.00 0.00 0.00 3.58
3961 4378 1.835267 TGACGGTGGTGGCTACTGT 60.835 57.895 0.00 0.00 40.20 3.55
3975 4392 1.062880 CTACTGTCTCGAGCTTCCGTC 59.937 57.143 7.81 0.00 0.00 4.79
3985 4402 0.976641 AGCTTCCGTCTTGTGGATGA 59.023 50.000 0.00 0.00 34.91 2.92
4023 4444 1.564818 ACTACTGGGACTCTCGATCCA 59.435 52.381 5.92 0.00 38.06 3.41
4025 4446 1.032657 ACTGGGACTCTCGATCCACG 61.033 60.000 5.92 0.00 44.09 4.94
4027 4448 2.491022 GGGACTCTCGATCCACGGG 61.491 68.421 5.92 0.00 44.81 5.28
4032 4453 4.088421 CTCGATCCACGGGAAACG 57.912 61.111 12.70 12.70 46.62 3.60
4093 4524 1.208052 CCTCCTCTGCATTTCCTTCGA 59.792 52.381 0.00 0.00 0.00 3.71
4094 4525 2.158842 CCTCCTCTGCATTTCCTTCGAT 60.159 50.000 0.00 0.00 0.00 3.59
4095 4526 3.129871 CTCCTCTGCATTTCCTTCGATC 58.870 50.000 0.00 0.00 0.00 3.69
4096 4527 1.863454 CCTCTGCATTTCCTTCGATCG 59.137 52.381 9.36 9.36 0.00 3.69
4139 4570 2.448582 AACGGCAACTGTGGGAGGA 61.449 57.895 0.00 0.00 0.00 3.71
4147 4578 2.821969 CAACTGTGGGAGGAATTTGAGG 59.178 50.000 0.00 0.00 0.00 3.86
4157 4588 0.442699 GAATTTGAGGTCCGTCGTGC 59.557 55.000 0.00 0.00 0.00 5.34
4158 4589 0.034896 AATTTGAGGTCCGTCGTGCT 59.965 50.000 0.00 0.00 0.00 4.40
4176 4607 4.043168 GTGCGGCACACTGTACTT 57.957 55.556 27.10 0.00 46.41 2.24
4177 4608 1.569493 GTGCGGCACACTGTACTTG 59.431 57.895 27.10 0.00 46.41 3.16
4180 4611 3.253955 GGCACACTGTACTTGCCG 58.746 61.111 10.43 0.00 46.11 5.69
4181 4612 2.325082 GGCACACTGTACTTGCCGG 61.325 63.158 10.43 0.00 46.11 6.13
4182 4613 2.325082 GCACACTGTACTTGCCGGG 61.325 63.158 2.18 0.00 0.00 5.73
4183 4614 2.032071 ACACTGTACTTGCCGGGC 59.968 61.111 13.32 13.32 0.00 6.13
4184 4615 2.347490 CACTGTACTTGCCGGGCT 59.653 61.111 21.46 2.03 0.00 5.19
4185 4616 1.302511 CACTGTACTTGCCGGGCTT 60.303 57.895 21.46 7.08 0.00 4.35
4186 4617 1.302511 ACTGTACTTGCCGGGCTTG 60.303 57.895 21.46 14.73 0.00 4.01
4187 4618 1.302511 CTGTACTTGCCGGGCTTGT 60.303 57.895 21.46 19.49 0.00 3.16
4188 4619 0.036765 CTGTACTTGCCGGGCTTGTA 60.037 55.000 21.46 18.50 0.00 2.41
4189 4620 0.397187 TGTACTTGCCGGGCTTGTAA 59.603 50.000 21.46 4.88 0.00 2.41
4190 4621 1.003812 TGTACTTGCCGGGCTTGTAAT 59.996 47.619 21.46 2.48 0.00 1.89
4191 4622 1.400494 GTACTTGCCGGGCTTGTAATG 59.600 52.381 21.46 4.17 0.00 1.90
4192 4623 1.139520 CTTGCCGGGCTTGTAATGC 59.860 57.895 21.46 0.00 36.06 3.56
4193 4624 1.594194 CTTGCCGGGCTTGTAATGCA 61.594 55.000 21.46 0.00 39.01 3.96
4194 4625 1.872197 TTGCCGGGCTTGTAATGCAC 61.872 55.000 21.46 0.00 39.01 4.57
4197 4628 2.100216 GGGCTTGTAATGCACGCG 59.900 61.111 3.53 3.53 42.51 6.01
4198 4629 2.686816 GGGCTTGTAATGCACGCGT 61.687 57.895 5.58 5.58 42.51 6.01
4199 4630 1.363145 GGGCTTGTAATGCACGCGTA 61.363 55.000 13.44 0.00 42.51 4.42
4200 4631 0.247537 GGCTTGTAATGCACGCGTAC 60.248 55.000 13.44 7.10 42.51 3.67
4201 4632 3.786266 GGCTTGTAATGCACGCGTACG 62.786 57.143 13.44 11.84 42.51 3.67
4202 4633 0.583083 CTTGTAATGCACGCGTACGC 60.583 55.000 29.83 29.83 45.53 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.601332 TCCCATGGGTAAAATCTGATCTTAC 58.399 40.000 30.28 5.49 36.47 2.34
103 104 3.520290 TTGTAGGTAATCAGCCGTGAG 57.480 47.619 0.00 0.00 35.66 3.51
137 138 1.531602 GTTTGGGCCAGCCTCAAGT 60.532 57.895 6.23 0.00 36.10 3.16
248 250 5.230936 CAGCTCGATCAGTAGTGTATGTTTG 59.769 44.000 0.00 0.00 0.00 2.93
249 251 5.344066 CAGCTCGATCAGTAGTGTATGTTT 58.656 41.667 0.00 0.00 0.00 2.83
250 252 4.734989 GCAGCTCGATCAGTAGTGTATGTT 60.735 45.833 0.00 0.00 0.00 2.71
253 255 2.031595 CGCAGCTCGATCAGTAGTGTAT 60.032 50.000 0.00 0.00 41.67 2.29
254 256 1.330829 CGCAGCTCGATCAGTAGTGTA 59.669 52.381 0.00 0.00 41.67 2.90
255 257 0.099613 CGCAGCTCGATCAGTAGTGT 59.900 55.000 0.00 0.00 41.67 3.55
256 258 0.099613 ACGCAGCTCGATCAGTAGTG 59.900 55.000 11.64 0.00 41.67 2.74
257 259 0.811915 AACGCAGCTCGATCAGTAGT 59.188 50.000 11.64 0.00 41.67 2.73
260 262 0.734253 GACAACGCAGCTCGATCAGT 60.734 55.000 11.64 5.17 41.67 3.41
312 314 0.826715 TACCATCTCTGCTGCCACTC 59.173 55.000 0.00 0.00 0.00 3.51
324 326 6.013032 CCCATCATGTCTCCTTAATACCATCT 60.013 42.308 0.00 0.00 0.00 2.90
364 366 5.197549 CAGTTGAACAAATACCGATATGCG 58.802 41.667 0.00 0.00 40.47 4.73
370 372 5.845103 TCACTACAGTTGAACAAATACCGA 58.155 37.500 0.00 0.00 0.00 4.69
390 392 1.796617 GCTCGGCTTTCAATGCATCAC 60.797 52.381 0.00 0.00 0.00 3.06
401 403 1.755179 ATTGCATGTAGCTCGGCTTT 58.245 45.000 3.71 0.00 45.94 3.51
434 436 8.668353 CATGTTACAGTGTTGAATAGCTAATGT 58.332 33.333 0.00 0.00 0.00 2.71
458 460 1.285667 TGACTGGACAATGATGGGCAT 59.714 47.619 0.00 0.00 39.43 4.40
481 483 1.001393 GGAAATGGCCACGGAGGAA 60.001 57.895 8.16 0.00 41.22 3.36
487 489 0.461870 TCATCGAGGAAATGGCCACG 60.462 55.000 8.16 6.13 42.30 4.94
587 589 5.950758 TGCTCACGCTTAATTTTTAAGGA 57.049 34.783 8.61 0.00 36.97 3.36
688 690 2.042162 AGGCAAAAGATCCTCCACACAT 59.958 45.455 0.00 0.00 0.00 3.21
732 734 4.095334 CGGGGGTAAAAGAGTTTTATTCCG 59.905 45.833 12.13 12.13 37.44 4.30
771 773 9.409312 TCGATCGTAAACAGTGTAATTTTTAGA 57.591 29.630 15.94 0.00 0.00 2.10
774 776 9.887406 AAATCGATCGTAAACAGTGTAATTTTT 57.113 25.926 15.94 0.00 0.00 1.94
775 777 9.887406 AAAATCGATCGTAAACAGTGTAATTTT 57.113 25.926 15.94 11.55 0.00 1.82
779 781 8.810427 GGATAAAATCGATCGTAAACAGTGTAA 58.190 33.333 15.94 0.00 0.00 2.41
780 782 8.192774 AGGATAAAATCGATCGTAAACAGTGTA 58.807 33.333 15.94 0.00 0.00 2.90
781 783 7.039882 AGGATAAAATCGATCGTAAACAGTGT 58.960 34.615 15.94 0.00 0.00 3.55
782 784 7.464830 AGGATAAAATCGATCGTAAACAGTG 57.535 36.000 15.94 0.00 0.00 3.66
783 785 8.488651 AAAGGATAAAATCGATCGTAAACAGT 57.511 30.769 15.94 0.00 0.00 3.55
784 786 9.769093 AAAAAGGATAAAATCGATCGTAAACAG 57.231 29.630 15.94 0.00 0.00 3.16
788 790 9.381033 TGGTAAAAAGGATAAAATCGATCGTAA 57.619 29.630 15.94 0.00 0.00 3.18
789 791 8.945481 TGGTAAAAAGGATAAAATCGATCGTA 57.055 30.769 15.94 0.00 0.00 3.43
790 792 7.852971 TGGTAAAAAGGATAAAATCGATCGT 57.147 32.000 15.94 0.00 0.00 3.73
791 793 8.556194 TCATGGTAAAAAGGATAAAATCGATCG 58.444 33.333 9.36 9.36 0.00 3.69
792 794 9.884465 CTCATGGTAAAAAGGATAAAATCGATC 57.116 33.333 0.00 0.00 0.00 3.69
793 795 8.352942 GCTCATGGTAAAAAGGATAAAATCGAT 58.647 33.333 0.00 0.00 0.00 3.59
794 796 7.556275 AGCTCATGGTAAAAAGGATAAAATCGA 59.444 33.333 0.00 0.00 0.00 3.59
795 797 7.707104 AGCTCATGGTAAAAAGGATAAAATCG 58.293 34.615 0.00 0.00 0.00 3.34
796 798 8.907885 AGAGCTCATGGTAAAAAGGATAAAATC 58.092 33.333 17.77 0.00 0.00 2.17
797 799 8.829373 AGAGCTCATGGTAAAAAGGATAAAAT 57.171 30.769 17.77 0.00 0.00 1.82
798 800 7.888021 TGAGAGCTCATGGTAAAAAGGATAAAA 59.112 33.333 17.77 0.00 34.14 1.52
799 801 7.402054 TGAGAGCTCATGGTAAAAAGGATAAA 58.598 34.615 17.77 0.00 34.14 1.40
800 802 6.957631 TGAGAGCTCATGGTAAAAAGGATAA 58.042 36.000 17.77 0.00 34.14 1.75
801 803 6.560003 TGAGAGCTCATGGTAAAAAGGATA 57.440 37.500 17.77 0.00 34.14 2.59
802 804 5.441718 TGAGAGCTCATGGTAAAAAGGAT 57.558 39.130 17.77 0.00 34.14 3.24
803 805 4.908601 TGAGAGCTCATGGTAAAAAGGA 57.091 40.909 17.77 0.00 34.14 3.36
804 806 5.474876 AGTTTGAGAGCTCATGGTAAAAAGG 59.525 40.000 17.77 0.00 39.64 3.11
805 807 6.566197 AGTTTGAGAGCTCATGGTAAAAAG 57.434 37.500 17.77 0.00 39.64 2.27
806 808 6.959639 AAGTTTGAGAGCTCATGGTAAAAA 57.040 33.333 17.77 2.79 39.64 1.94
807 809 7.500892 TGTTAAGTTTGAGAGCTCATGGTAAAA 59.499 33.333 17.77 4.17 39.64 1.52
808 810 6.995686 TGTTAAGTTTGAGAGCTCATGGTAAA 59.004 34.615 17.77 6.63 39.64 2.01
809 811 6.530120 TGTTAAGTTTGAGAGCTCATGGTAA 58.470 36.000 17.77 2.16 39.64 2.85
810 812 6.109156 TGTTAAGTTTGAGAGCTCATGGTA 57.891 37.500 17.77 0.00 39.64 3.25
811 813 4.973168 TGTTAAGTTTGAGAGCTCATGGT 58.027 39.130 17.77 0.00 39.64 3.55
812 814 5.947228 TTGTTAAGTTTGAGAGCTCATGG 57.053 39.130 17.77 0.00 39.64 3.66
813 815 8.807667 ATTTTTGTTAAGTTTGAGAGCTCATG 57.192 30.769 17.77 0.00 39.64 3.07
814 816 9.822185 AAATTTTTGTTAAGTTTGAGAGCTCAT 57.178 25.926 17.77 0.29 39.64 2.90
815 817 9.086336 CAAATTTTTGTTAAGTTTGAGAGCTCA 57.914 29.630 17.77 0.00 34.14 4.26
816 818 8.058328 GCAAATTTTTGTTAAGTTTGAGAGCTC 58.942 33.333 5.27 5.27 40.24 4.09
817 819 7.548780 TGCAAATTTTTGTTAAGTTTGAGAGCT 59.451 29.630 8.92 0.00 40.24 4.09
818 820 7.683746 TGCAAATTTTTGTTAAGTTTGAGAGC 58.316 30.769 8.92 0.00 40.24 4.09
819 821 9.853921 GATGCAAATTTTTGTTAAGTTTGAGAG 57.146 29.630 8.92 0.00 40.24 3.20
820 822 8.538856 CGATGCAAATTTTTGTTAAGTTTGAGA 58.461 29.630 8.92 0.00 40.24 3.27
821 823 8.538856 TCGATGCAAATTTTTGTTAAGTTTGAG 58.461 29.630 8.92 0.10 40.24 3.02
822 824 8.412608 TCGATGCAAATTTTTGTTAAGTTTGA 57.587 26.923 8.92 0.00 40.24 2.69
823 825 8.327429 ACTCGATGCAAATTTTTGTTAAGTTTG 58.673 29.630 0.00 0.00 40.24 2.93
824 826 8.419076 ACTCGATGCAAATTTTTGTTAAGTTT 57.581 26.923 0.00 0.00 40.24 2.66
825 827 8.964150 GTACTCGATGCAAATTTTTGTTAAGTT 58.036 29.630 0.00 0.00 40.24 2.66
826 828 8.132362 TGTACTCGATGCAAATTTTTGTTAAGT 58.868 29.630 0.00 5.04 40.24 2.24
827 829 8.500837 TGTACTCGATGCAAATTTTTGTTAAG 57.499 30.769 0.00 0.25 40.24 1.85
828 830 8.910666 CATGTACTCGATGCAAATTTTTGTTAA 58.089 29.630 0.00 0.00 40.24 2.01
829 831 7.061673 GCATGTACTCGATGCAAATTTTTGTTA 59.938 33.333 10.82 0.00 44.74 2.41
830 832 6.128849 GCATGTACTCGATGCAAATTTTTGTT 60.129 34.615 10.82 0.00 44.74 2.83
831 833 5.345741 GCATGTACTCGATGCAAATTTTTGT 59.654 36.000 10.82 0.00 44.74 2.83
832 834 5.778134 GCATGTACTCGATGCAAATTTTTG 58.222 37.500 10.82 0.00 44.74 2.44
841 843 2.848302 GCTTTTTGCATGTACTCGATGC 59.152 45.455 9.18 9.18 45.45 3.91
854 856 1.528161 GTGGTGCAAGATGCTTTTTGC 59.472 47.619 17.79 17.79 45.31 3.68
855 857 2.137523 GGTGGTGCAAGATGCTTTTTG 58.862 47.619 3.78 0.00 45.31 2.44
856 858 1.761784 TGGTGGTGCAAGATGCTTTTT 59.238 42.857 3.78 0.00 45.31 1.94
857 859 1.412079 TGGTGGTGCAAGATGCTTTT 58.588 45.000 3.78 0.00 45.31 2.27
858 860 1.636148 ATGGTGGTGCAAGATGCTTT 58.364 45.000 3.78 0.00 45.31 3.51
859 861 1.636148 AATGGTGGTGCAAGATGCTT 58.364 45.000 3.78 0.00 45.31 3.91
860 862 1.636148 AAATGGTGGTGCAAGATGCT 58.364 45.000 3.78 0.00 45.31 3.79
861 863 2.460757 AAAATGGTGGTGCAAGATGC 57.539 45.000 0.00 0.00 45.29 3.91
894 896 8.385111 CGAGCTCAGATAAACCGTAAAATTTAA 58.615 33.333 15.40 0.00 0.00 1.52
895 897 7.010738 CCGAGCTCAGATAAACCGTAAAATTTA 59.989 37.037 15.40 0.00 0.00 1.40
896 898 6.183360 CCGAGCTCAGATAAACCGTAAAATTT 60.183 38.462 15.40 0.00 0.00 1.82
897 899 5.293569 CCGAGCTCAGATAAACCGTAAAATT 59.706 40.000 15.40 0.00 0.00 1.82
898 900 4.809426 CCGAGCTCAGATAAACCGTAAAAT 59.191 41.667 15.40 0.00 0.00 1.82
899 901 4.178540 CCGAGCTCAGATAAACCGTAAAA 58.821 43.478 15.40 0.00 0.00 1.52
900 902 3.429822 CCCGAGCTCAGATAAACCGTAAA 60.430 47.826 15.40 0.00 0.00 2.01
901 903 2.100252 CCCGAGCTCAGATAAACCGTAA 59.900 50.000 15.40 0.00 0.00 3.18
902 904 1.679680 CCCGAGCTCAGATAAACCGTA 59.320 52.381 15.40 0.00 0.00 4.02
903 905 0.460311 CCCGAGCTCAGATAAACCGT 59.540 55.000 15.40 0.00 0.00 4.83
904 906 0.876342 GCCCGAGCTCAGATAAACCG 60.876 60.000 15.40 0.00 35.50 4.44
905 907 2.993539 GCCCGAGCTCAGATAAACC 58.006 57.895 15.40 0.00 35.50 3.27
916 918 3.134127 AAAATCCGCAGCCCGAGC 61.134 61.111 0.00 0.00 40.02 5.03
917 919 1.709147 CTCAAAATCCGCAGCCCGAG 61.709 60.000 0.00 0.00 40.02 4.63
918 920 1.745115 CTCAAAATCCGCAGCCCGA 60.745 57.895 0.00 0.00 40.02 5.14
919 921 1.586154 AACTCAAAATCCGCAGCCCG 61.586 55.000 0.00 0.00 0.00 6.13
920 922 1.459450 TAACTCAAAATCCGCAGCCC 58.541 50.000 0.00 0.00 0.00 5.19
921 923 2.286418 CGATAACTCAAAATCCGCAGCC 60.286 50.000 0.00 0.00 0.00 4.85
922 924 2.286418 CCGATAACTCAAAATCCGCAGC 60.286 50.000 0.00 0.00 0.00 5.25
923 925 2.287915 CCCGATAACTCAAAATCCGCAG 59.712 50.000 0.00 0.00 0.00 5.18
924 926 2.285083 CCCGATAACTCAAAATCCGCA 58.715 47.619 0.00 0.00 0.00 5.69
925 927 2.285977 ACCCGATAACTCAAAATCCGC 58.714 47.619 0.00 0.00 0.00 5.54
926 928 4.438200 CCAAACCCGATAACTCAAAATCCG 60.438 45.833 0.00 0.00 0.00 4.18
927 929 4.703093 TCCAAACCCGATAACTCAAAATCC 59.297 41.667 0.00 0.00 0.00 3.01
928 930 5.163652 CCTCCAAACCCGATAACTCAAAATC 60.164 44.000 0.00 0.00 0.00 2.17
929 931 4.705023 CCTCCAAACCCGATAACTCAAAAT 59.295 41.667 0.00 0.00 0.00 1.82
930 932 4.076394 CCTCCAAACCCGATAACTCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
931 933 3.681593 CCTCCAAACCCGATAACTCAAA 58.318 45.455 0.00 0.00 0.00 2.69
932 934 2.617021 GCCTCCAAACCCGATAACTCAA 60.617 50.000 0.00 0.00 0.00 3.02
933 935 1.065709 GCCTCCAAACCCGATAACTCA 60.066 52.381 0.00 0.00 0.00 3.41
934 936 1.664873 GCCTCCAAACCCGATAACTC 58.335 55.000 0.00 0.00 0.00 3.01
935 937 0.107848 CGCCTCCAAACCCGATAACT 60.108 55.000 0.00 0.00 0.00 2.24
936 938 0.392060 ACGCCTCCAAACCCGATAAC 60.392 55.000 0.00 0.00 0.00 1.89
984 986 2.026734 ATCGCAGAGTCGGCATCG 59.973 61.111 15.67 0.00 43.63 3.84
988 990 1.875813 CAGTCATCGCAGAGTCGGC 60.876 63.158 5.04 5.04 43.63 5.54
1171 1186 3.707189 GGGGGAGGGGGAGGAGAA 61.707 72.222 0.00 0.00 0.00 2.87
1180 1210 1.151908 CGAGTAGAGAGGGGGAGGG 59.848 68.421 0.00 0.00 0.00 4.30
1320 1350 0.535102 AACAAGCTGGACGAACTGGG 60.535 55.000 0.00 0.00 0.00 4.45
1349 1379 4.689345 AGTAGTAATCCAACACGCAGAAAC 59.311 41.667 0.00 0.00 0.00 2.78
1375 1405 7.516198 TCGAAACTAAACTGGAACTAGTAGT 57.484 36.000 0.00 0.00 0.00 2.73
1376 1406 8.295288 TCTTCGAAACTAAACTGGAACTAGTAG 58.705 37.037 0.00 0.00 0.00 2.57
1377 1407 8.169977 TCTTCGAAACTAAACTGGAACTAGTA 57.830 34.615 0.00 0.00 0.00 1.82
1385 1415 8.628882 AATTTTGTTCTTCGAAACTAAACTGG 57.371 30.769 10.39 0.00 36.93 4.00
1413 1443 1.966451 GGAAGTCCCCAACGCAGTG 60.966 63.158 0.00 0.00 45.00 3.66
1484 1514 4.861462 CGGATATCTATTGCTGCACTAGTG 59.139 45.833 21.61 18.93 0.00 2.74
1572 1602 5.243283 GCCTAGTAGGATAATTTCTCCGACA 59.757 44.000 21.02 7.07 39.91 4.35
1635 1669 0.458543 TCTCATCTCCGAACGCAAGC 60.459 55.000 0.00 0.00 45.62 4.01
1642 1676 2.381752 TAGGCCATCTCATCTCCGAA 57.618 50.000 5.01 0.00 0.00 4.30
1679 1713 1.065199 ACCCATGTATGACAGTGCCAG 60.065 52.381 0.00 0.00 0.00 4.85
1716 1753 8.511321 TGAACAACACAAGACATATTGGAATAC 58.489 33.333 0.00 0.00 34.36 1.89
1790 1835 2.367030 TGCAAGTTGCCATGCATAAC 57.633 45.000 24.59 0.00 46.87 1.89
1798 1843 3.622163 CACTTTTCAATTGCAAGTTGCCA 59.378 39.130 24.59 14.94 44.23 4.92
1850 1900 1.227380 CATAGAGCGCAGGTGGTCC 60.227 63.158 11.47 0.00 39.88 4.46
1852 1902 0.324943 AAACATAGAGCGCAGGTGGT 59.675 50.000 11.47 0.00 39.88 4.16
1853 1903 1.009829 GAAACATAGAGCGCAGGTGG 58.990 55.000 11.47 0.00 39.88 4.61
1854 1904 1.929836 GAGAAACATAGAGCGCAGGTG 59.070 52.381 11.47 5.29 39.88 4.00
1859 1909 1.929836 CCTGTGAGAAACATAGAGCGC 59.070 52.381 0.00 0.00 39.56 5.92
2114 2164 5.892524 TCCCATCATGTGTATCATTCTCA 57.107 39.130 0.00 0.00 34.09 3.27
2120 2170 4.297768 TCCTCTTCCCATCATGTGTATCA 58.702 43.478 0.00 0.00 0.00 2.15
2233 2283 3.710209 AGCAAAACTCATACAGCTCCT 57.290 42.857 0.00 0.00 0.00 3.69
2291 2341 0.105964 GCCCACCAACCTTTTTCCAC 59.894 55.000 0.00 0.00 0.00 4.02
2348 2398 6.675413 AACATCCACCACAGTTAGTACTTA 57.325 37.500 0.00 0.00 30.26 2.24
2370 2420 6.648725 CCAAAAGACAACAAACTGGAGAAAAA 59.351 34.615 0.00 0.00 0.00 1.94
2391 2441 6.855763 AATTGCATAATCAGAAGTCCCAAA 57.144 33.333 0.00 0.00 0.00 3.28
2410 2460 7.820648 AGTCTAGCAAAACTGGAACATAATTG 58.179 34.615 0.00 0.00 37.67 2.32
2411 2461 9.686683 ATAGTCTAGCAAAACTGGAACATAATT 57.313 29.630 0.00 0.00 37.67 1.40
2450 2500 9.000978 AGTATATATTTCATGAGGATGGCTGAT 57.999 33.333 0.00 0.00 0.00 2.90
2543 2605 6.726299 TGATCTTAATTACTCCTCCGATCCAT 59.274 38.462 0.00 0.00 0.00 3.41
2544 2606 6.075315 TGATCTTAATTACTCCTCCGATCCA 58.925 40.000 0.00 0.00 0.00 3.41
2546 2608 7.222000 ACTGATCTTAATTACTCCTCCGATC 57.778 40.000 0.00 0.00 0.00 3.69
2547 2609 7.287927 TGAACTGATCTTAATTACTCCTCCGAT 59.712 37.037 0.00 0.00 0.00 4.18
2604 2667 6.089417 GTGTGCAAAATAGGTGAGCAAAATAC 59.911 38.462 0.00 0.00 36.91 1.89
2608 2671 3.243704 GGTGTGCAAAATAGGTGAGCAAA 60.244 43.478 0.00 0.00 36.91 3.68
2609 2672 2.295909 GGTGTGCAAAATAGGTGAGCAA 59.704 45.455 0.00 0.00 36.91 3.91
2610 2673 1.885887 GGTGTGCAAAATAGGTGAGCA 59.114 47.619 0.00 0.00 0.00 4.26
2611 2674 1.885887 TGGTGTGCAAAATAGGTGAGC 59.114 47.619 0.00 0.00 0.00 4.26
2612 2675 3.119388 CCATGGTGTGCAAAATAGGTGAG 60.119 47.826 2.57 0.00 0.00 3.51
2626 2690 0.034574 TCGCATAAAGGCCATGGTGT 60.035 50.000 14.67 0.00 0.00 4.16
2648 2712 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2649 2713 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
2650 2714 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
2679 2743 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
2680 2744 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
2681 2745 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
2682 2746 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
2683 2747 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2684 2748 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2685 2749 9.224058 GTAAGAGCGTTTAGATCACTACTTTAG 57.776 37.037 0.00 0.00 37.82 1.85
2686 2750 8.733458 TGTAAGAGCGTTTAGATCACTACTTTA 58.267 33.333 0.00 0.00 37.82 1.85
2687 2751 7.600065 TGTAAGAGCGTTTAGATCACTACTTT 58.400 34.615 0.00 0.00 37.82 2.66
2688 2752 7.154435 TGTAAGAGCGTTTAGATCACTACTT 57.846 36.000 0.00 0.00 37.82 2.24
2689 2753 6.754702 TGTAAGAGCGTTTAGATCACTACT 57.245 37.500 0.00 0.00 37.82 2.57
2690 2754 7.988904 AATGTAAGAGCGTTTAGATCACTAC 57.011 36.000 0.00 0.00 37.82 2.73
2691 2755 8.900781 ACTAATGTAAGAGCGTTTAGATCACTA 58.099 33.333 0.00 0.00 37.82 2.74
2692 2756 7.773149 ACTAATGTAAGAGCGTTTAGATCACT 58.227 34.615 0.00 0.00 37.82 3.41
2693 2757 7.988904 ACTAATGTAAGAGCGTTTAGATCAC 57.011 36.000 0.00 0.00 37.82 3.06
2694 2758 8.997621 AAACTAATGTAAGAGCGTTTAGATCA 57.002 30.769 0.00 0.00 37.82 2.92
2696 2760 9.865321 TGTAAACTAATGTAAGAGCGTTTAGAT 57.135 29.630 0.00 0.00 30.36 1.98
2697 2761 9.350357 CTGTAAACTAATGTAAGAGCGTTTAGA 57.650 33.333 0.00 0.00 30.36 2.10
2698 2762 9.350357 TCTGTAAACTAATGTAAGAGCGTTTAG 57.650 33.333 0.00 0.00 30.36 1.85
2699 2763 9.350357 CTCTGTAAACTAATGTAAGAGCGTTTA 57.650 33.333 0.00 0.00 0.00 2.01
2700 2764 7.331193 CCTCTGTAAACTAATGTAAGAGCGTTT 59.669 37.037 0.00 0.00 0.00 3.60
2701 2765 6.812160 CCTCTGTAAACTAATGTAAGAGCGTT 59.188 38.462 0.00 0.00 0.00 4.84
2702 2766 6.152323 TCCTCTGTAAACTAATGTAAGAGCGT 59.848 38.462 0.00 0.00 0.00 5.07
2703 2767 6.561614 TCCTCTGTAAACTAATGTAAGAGCG 58.438 40.000 0.00 0.00 0.00 5.03
2704 2768 8.035984 ACTTCCTCTGTAAACTAATGTAAGAGC 58.964 37.037 0.00 0.00 0.00 4.09
2767 2986 2.360852 CAGGAGCAGGGGCACTTG 60.361 66.667 0.00 0.00 44.61 3.16
2846 3066 3.804036 ACTAGTAGTTGCAACAGCACAA 58.196 40.909 30.11 10.20 38.15 3.33
2943 3163 2.040178 ACCATAGCTTCGGAACTAGGG 58.960 52.381 19.80 19.80 44.10 3.53
2946 3166 4.284178 AGGTAACCATAGCTTCGGAACTA 58.716 43.478 8.04 0.00 36.47 2.24
2951 3171 3.261981 ACAAGGTAACCATAGCTTCGG 57.738 47.619 0.00 0.00 45.57 4.30
2953 3173 5.064834 GCTGTTACAAGGTAACCATAGCTTC 59.935 44.000 14.63 0.00 45.57 3.86
2955 3175 4.225267 AGCTGTTACAAGGTAACCATAGCT 59.775 41.667 18.86 18.86 41.53 3.32
2960 3180 5.556006 AAGTAGCTGTTACAAGGTAACCA 57.444 39.130 14.63 4.71 34.56 3.67
2983 3203 5.951148 TGAGGATGTTGAATTAAGGCAATCA 59.049 36.000 0.00 0.00 0.00 2.57
2984 3204 6.455360 TGAGGATGTTGAATTAAGGCAATC 57.545 37.500 0.00 0.00 0.00 2.67
3003 3223 1.450134 TTAGCAGTGCGCCATGAGG 60.450 57.895 10.00 0.00 44.04 3.86
3061 3282 3.767806 CAGCGGAGGCAGCAGAGA 61.768 66.667 0.00 0.00 43.41 3.10
3258 3482 6.097270 TGTTTTCATTCATTCATCAGGGATCC 59.903 38.462 1.92 1.92 0.00 3.36
3267 3491 9.607285 GTACGTTACTTGTTTTCATTCATTCAT 57.393 29.630 0.00 0.00 0.00 2.57
3268 3492 8.613482 TGTACGTTACTTGTTTTCATTCATTCA 58.387 29.630 0.00 0.00 0.00 2.57
3269 3493 8.996988 TGTACGTTACTTGTTTTCATTCATTC 57.003 30.769 0.00 0.00 0.00 2.67
3270 3494 9.959749 ATTGTACGTTACTTGTTTTCATTCATT 57.040 25.926 0.00 0.00 0.00 2.57
3371 3595 0.107410 AGTTGTCAACTTCCACGGCA 60.107 50.000 12.62 0.00 39.04 5.69
3387 3611 5.470098 ACATAACATTCTCAGCGAAACAGTT 59.530 36.000 0.00 0.00 34.79 3.16
3399 3623 7.041984 GGAAGATCGGGTTAACATAACATTCTC 60.042 40.741 8.10 0.00 0.00 2.87
3400 3624 6.766467 GGAAGATCGGGTTAACATAACATTCT 59.234 38.462 8.10 0.00 0.00 2.40
3435 3659 4.613622 GCAAGGCACAACAATACTACTGTG 60.614 45.833 0.00 0.00 41.68 3.66
3470 3699 4.130118 CAAGTAATTCGGAATGGAGGGAG 58.870 47.826 3.59 0.00 0.00 4.30
3471 3700 3.521937 ACAAGTAATTCGGAATGGAGGGA 59.478 43.478 3.59 0.00 0.00 4.20
3472 3701 3.886123 ACAAGTAATTCGGAATGGAGGG 58.114 45.455 3.59 0.00 0.00 4.30
3473 3702 5.897377 AAACAAGTAATTCGGAATGGAGG 57.103 39.130 3.59 0.00 0.00 4.30
3474 3703 8.263940 TCTAAAACAAGTAATTCGGAATGGAG 57.736 34.615 3.59 0.00 0.00 3.86
3475 3704 8.801882 ATCTAAAACAAGTAATTCGGAATGGA 57.198 30.769 3.59 0.00 0.00 3.41
3476 3705 9.855021 AAATCTAAAACAAGTAATTCGGAATGG 57.145 29.630 3.59 0.00 0.00 3.16
3479 3708 9.887406 GACAAATCTAAAACAAGTAATTCGGAA 57.113 29.630 0.00 0.00 0.00 4.30
3480 3709 9.058174 TGACAAATCTAAAACAAGTAATTCGGA 57.942 29.630 0.00 0.00 0.00 4.55
3481 3710 9.672086 TTGACAAATCTAAAACAAGTAATTCGG 57.328 29.630 0.00 0.00 0.00 4.30
3488 3717 8.504005 CCGTATCTTGACAAATCTAAAACAAGT 58.496 33.333 0.00 0.00 36.91 3.16
3489 3718 8.717821 TCCGTATCTTGACAAATCTAAAACAAG 58.282 33.333 0.00 0.00 36.91 3.16
3490 3719 8.610248 TCCGTATCTTGACAAATCTAAAACAA 57.390 30.769 0.00 0.00 0.00 2.83
3491 3720 7.333423 CCTCCGTATCTTGACAAATCTAAAACA 59.667 37.037 0.00 0.00 0.00 2.83
3492 3721 7.333672 ACCTCCGTATCTTGACAAATCTAAAAC 59.666 37.037 0.00 0.00 0.00 2.43
3493 3722 7.391620 ACCTCCGTATCTTGACAAATCTAAAA 58.608 34.615 0.00 0.00 0.00 1.52
3494 3723 6.942976 ACCTCCGTATCTTGACAAATCTAAA 58.057 36.000 0.00 0.00 0.00 1.85
3495 3724 6.540438 ACCTCCGTATCTTGACAAATCTAA 57.460 37.500 0.00 0.00 0.00 2.10
3496 3725 7.834881 ATACCTCCGTATCTTGACAAATCTA 57.165 36.000 0.00 0.00 28.45 1.98
3497 3726 6.732896 ATACCTCCGTATCTTGACAAATCT 57.267 37.500 0.00 0.00 28.45 2.40
3509 3738 7.778185 ATTTTAGTGCTAGATACCTCCGTAT 57.222 36.000 0.00 0.00 37.92 3.06
3510 3739 8.696043 TTATTTTAGTGCTAGATACCTCCGTA 57.304 34.615 0.00 0.00 0.00 4.02
3511 3740 7.287235 ACTTATTTTAGTGCTAGATACCTCCGT 59.713 37.037 0.00 0.00 0.00 4.69
3512 3741 7.659186 ACTTATTTTAGTGCTAGATACCTCCG 58.341 38.462 0.00 0.00 0.00 4.63
3513 3742 8.862085 AGACTTATTTTAGTGCTAGATACCTCC 58.138 37.037 0.00 0.00 0.00 4.30
3524 3753 9.130312 CGGATGTATCTAGACTTATTTTAGTGC 57.870 37.037 0.00 0.00 0.00 4.40
3542 3771 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
3543 3772 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
3544 3773 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
3545 3774 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
3546 3775 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
3547 3776 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
3548 3777 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
3549 3778 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
3550 3779 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
3552 3781 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
3553 3782 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
3554 3783 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
3555 3784 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
3556 3785 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
3557 3786 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
3558 3787 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
3559 3788 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
3560 3789 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
3561 3790 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
3562 3791 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
3563 3792 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
3564 3793 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
3565 3794 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
3566 3795 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
3567 3796 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
3568 3797 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3569 3798 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
3570 3799 3.241067 TCCTCCGTTCCGAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
3571 3800 3.260128 ACTTCCTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
3572 3801 2.830321 ACTTCCTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
3573 3802 3.242549 ACTTCCTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
3574 3803 4.019174 ACTACTTCCTCCGTTCCGAATTA 58.981 43.478 0.00 0.00 0.00 1.40
3575 3804 2.830321 ACTACTTCCTCCGTTCCGAATT 59.170 45.455 0.00 0.00 0.00 2.17
3576 3805 2.454538 ACTACTTCCTCCGTTCCGAAT 58.545 47.619 0.00 0.00 0.00 3.34
3577 3806 1.915141 ACTACTTCCTCCGTTCCGAA 58.085 50.000 0.00 0.00 0.00 4.30
3578 3807 1.915141 AACTACTTCCTCCGTTCCGA 58.085 50.000 0.00 0.00 0.00 4.55
3579 3808 2.738013 AAACTACTTCCTCCGTTCCG 57.262 50.000 0.00 0.00 0.00 4.30
3580 3809 4.797800 AGTAAACTACTTCCTCCGTTCC 57.202 45.455 0.00 0.00 34.86 3.62
3581 3810 7.918033 GGTATTAGTAAACTACTTCCTCCGTTC 59.082 40.741 0.00 0.00 40.14 3.95
3582 3811 7.617329 AGGTATTAGTAAACTACTTCCTCCGTT 59.383 37.037 1.38 0.00 40.14 4.44
3583 3812 7.122048 AGGTATTAGTAAACTACTTCCTCCGT 58.878 38.462 1.38 0.00 40.14 4.69
3584 3813 7.501892 AGAGGTATTAGTAAACTACTTCCTCCG 59.498 40.741 20.16 0.00 39.31 4.63
3585 3814 8.631797 CAGAGGTATTAGTAAACTACTTCCTCC 58.368 40.741 20.16 9.77 39.31 4.30
3586 3815 9.187996 ACAGAGGTATTAGTAAACTACTTCCTC 57.812 37.037 17.93 17.93 40.14 3.71
3611 3840 9.905171 CGGAGGGAGTATTAAGTATTAAACTAC 57.095 37.037 0.00 0.00 44.76 2.73
3612 3841 8.579863 GCGGAGGGAGTATTAAGTATTAAACTA 58.420 37.037 0.00 0.00 44.76 2.24
3613 3842 7.440198 GCGGAGGGAGTATTAAGTATTAAACT 58.560 38.462 0.00 0.00 44.76 2.66
3614 3843 6.648310 GGCGGAGGGAGTATTAAGTATTAAAC 59.352 42.308 0.00 0.00 44.76 2.01
3615 3844 6.239686 GGGCGGAGGGAGTATTAAGTATTAAA 60.240 42.308 0.00 0.00 44.76 1.52
3616 3845 5.246883 GGGCGGAGGGAGTATTAAGTATTAA 59.753 44.000 0.00 0.00 45.80 1.40
3617 3846 4.774200 GGGCGGAGGGAGTATTAAGTATTA 59.226 45.833 0.00 0.00 0.00 0.98
3618 3847 3.581770 GGGCGGAGGGAGTATTAAGTATT 59.418 47.826 0.00 0.00 0.00 1.89
3619 3848 3.171528 GGGCGGAGGGAGTATTAAGTAT 58.828 50.000 0.00 0.00 0.00 2.12
3620 3849 2.178544 AGGGCGGAGGGAGTATTAAGTA 59.821 50.000 0.00 0.00 0.00 2.24
3626 3855 0.104934 ATTCAGGGCGGAGGGAGTAT 60.105 55.000 0.00 0.00 0.00 2.12
3635 3864 2.014128 ACGACAAATAATTCAGGGCGG 58.986 47.619 0.00 0.00 0.00 6.13
3636 3865 4.116961 TCTACGACAAATAATTCAGGGCG 58.883 43.478 0.00 0.00 0.00 6.13
3638 3867 6.765989 TCCATTCTACGACAAATAATTCAGGG 59.234 38.462 0.00 0.00 0.00 4.45
3639 3868 7.786178 TCCATTCTACGACAAATAATTCAGG 57.214 36.000 0.00 0.00 0.00 3.86
3641 3870 8.731275 ACATCCATTCTACGACAAATAATTCA 57.269 30.769 0.00 0.00 0.00 2.57
3647 3876 9.078990 TCTAGATACATCCATTCTACGACAAAT 57.921 33.333 0.00 0.00 0.00 2.32
3649 3878 8.350722 GTTCTAGATACATCCATTCTACGACAA 58.649 37.037 0.00 0.00 0.00 3.18
3650 3879 7.720074 AGTTCTAGATACATCCATTCTACGACA 59.280 37.037 0.00 0.00 0.00 4.35
3651 3880 8.101654 AGTTCTAGATACATCCATTCTACGAC 57.898 38.462 0.00 0.00 0.00 4.34
3652 3881 9.788889 TTAGTTCTAGATACATCCATTCTACGA 57.211 33.333 0.00 0.00 0.00 3.43
3681 3910 9.516546 TGTAGAAATGGATGTATCTAGACGTAT 57.483 33.333 0.00 0.00 0.00 3.06
3682 3911 8.913487 TGTAGAAATGGATGTATCTAGACGTA 57.087 34.615 0.00 0.00 0.00 3.57
3683 3912 7.818997 TGTAGAAATGGATGTATCTAGACGT 57.181 36.000 0.00 0.00 0.00 4.34
3684 3913 9.529325 TTTTGTAGAAATGGATGTATCTAGACG 57.471 33.333 0.00 0.00 0.00 4.18
3696 3925 9.026121 TCCCGAATTAATTTTTGTAGAAATGGA 57.974 29.630 1.43 0.00 30.06 3.41
3697 3926 9.083080 GTCCCGAATTAATTTTTGTAGAAATGG 57.917 33.333 1.43 0.00 30.06 3.16
3698 3927 8.794406 CGTCCCGAATTAATTTTTGTAGAAATG 58.206 33.333 1.43 0.00 30.06 2.32
3699 3928 8.517056 ACGTCCCGAATTAATTTTTGTAGAAAT 58.483 29.630 1.43 0.00 0.00 2.17
3701 3930 7.437793 ACGTCCCGAATTAATTTTTGTAGAA 57.562 32.000 1.43 0.00 0.00 2.10
3703 3932 7.853929 CCATACGTCCCGAATTAATTTTTGTAG 59.146 37.037 1.43 0.00 0.00 2.74
3704 3933 7.551974 TCCATACGTCCCGAATTAATTTTTGTA 59.448 33.333 1.43 1.65 0.00 2.41
3706 3935 6.787225 TCCATACGTCCCGAATTAATTTTTG 58.213 36.000 1.43 0.00 0.00 2.44
3712 3941 7.177216 ACATATACTCCATACGTCCCGAATTAA 59.823 37.037 0.00 0.00 0.00 1.40
3713 3942 6.660521 ACATATACTCCATACGTCCCGAATTA 59.339 38.462 0.00 0.00 0.00 1.40
3715 3944 5.014858 ACATATACTCCATACGTCCCGAAT 58.985 41.667 0.00 0.00 0.00 3.34
3718 3947 3.754850 TGACATATACTCCATACGTCCCG 59.245 47.826 0.00 0.00 32.48 5.14
3721 4112 5.390673 CGTCCTGACATATACTCCATACGTC 60.391 48.000 0.00 0.00 33.77 4.34
3725 4116 6.971726 AAACGTCCTGACATATACTCCATA 57.028 37.500 0.00 0.00 0.00 2.74
3727 4118 5.670792 AAAACGTCCTGACATATACTCCA 57.329 39.130 0.00 0.00 0.00 3.86
3741 4132 4.989168 ACTATGACTGTCAGAAAAACGTCC 59.011 41.667 16.46 0.00 0.00 4.79
3745 4136 8.589335 TTAGACACTATGACTGTCAGAAAAAC 57.411 34.615 16.46 6.65 40.56 2.43
3751 4142 8.539770 ACATTTTTAGACACTATGACTGTCAG 57.460 34.615 16.46 6.09 40.56 3.51
3774 4165 6.131264 TCCCTCCGTAACTTATAATCAGACA 58.869 40.000 0.00 0.00 0.00 3.41
3783 4174 6.060788 CAGTAGTACTCCCTCCGTAACTTAT 58.939 44.000 0.00 0.00 0.00 1.73
3809 4205 3.261137 ACCAGTAGTAAGAAAGTGCCTCC 59.739 47.826 0.00 0.00 0.00 4.30
3812 4208 3.746492 CACACCAGTAGTAAGAAAGTGCC 59.254 47.826 0.00 0.00 0.00 5.01
3834 4236 2.558359 AGCAAAACAAGCACCTGATACC 59.442 45.455 0.00 0.00 0.00 2.73
3846 4248 0.247894 GTCGACGCACAGCAAAACAA 60.248 50.000 0.00 0.00 0.00 2.83
3878 4282 3.933542 GACCAGGGGCTCCTCACCT 62.934 68.421 0.00 0.00 42.67 4.00
3896 4300 2.125512 GCTGCTGGGACACCGTAG 60.126 66.667 0.00 0.00 40.75 3.51
3897 4301 2.603473 AGCTGCTGGGACACCGTA 60.603 61.111 0.00 0.00 40.75 4.02
3904 4321 0.467844 TTTCTTTGCAGCTGCTGGGA 60.468 50.000 36.61 26.52 42.66 4.37
3915 4332 4.803613 AGACCGTGAAATGTTTTTCTTTGC 59.196 37.500 0.75 0.00 41.54 3.68
3926 4343 2.618053 GTCACCCTAGACCGTGAAATG 58.382 52.381 8.33 0.00 40.53 2.32
3927 4344 1.203994 CGTCACCCTAGACCGTGAAAT 59.796 52.381 8.33 0.00 40.53 2.17
3928 4345 0.599558 CGTCACCCTAGACCGTGAAA 59.400 55.000 8.33 0.00 40.53 2.69
3940 4357 3.315949 TAGCCACCACCGTCACCC 61.316 66.667 0.00 0.00 0.00 4.61
3953 4370 0.101579 GGAAGCTCGAGACAGTAGCC 59.898 60.000 18.75 2.94 36.92 3.93
3954 4371 0.248296 CGGAAGCTCGAGACAGTAGC 60.248 60.000 18.75 0.00 36.48 3.58
3958 4375 0.523966 AAGACGGAAGCTCGAGACAG 59.476 55.000 18.75 9.68 0.00 3.51
3961 4378 0.241213 CACAAGACGGAAGCTCGAGA 59.759 55.000 18.75 0.00 0.00 4.04
3975 4392 0.109086 ACTCGCTCGTCATCCACAAG 60.109 55.000 0.00 0.00 0.00 3.16
3985 4402 0.318784 GTCAAGGTCAACTCGCTCGT 60.319 55.000 0.00 0.00 0.00 4.18
3990 4407 2.352814 CCCAGTAGTCAAGGTCAACTCG 60.353 54.545 0.00 0.00 0.00 4.18
4023 4444 0.810823 TTTCAAGACGCGTTTCCCGT 60.811 50.000 15.53 0.00 42.31 5.28
4025 4446 0.383860 CGTTTCAAGACGCGTTTCCC 60.384 55.000 15.53 0.00 36.12 3.97
4027 4448 0.578211 TCCGTTTCAAGACGCGTTTC 59.422 50.000 15.53 0.11 41.50 2.78
4032 4453 2.066262 TCTGAATCCGTTTCAAGACGC 58.934 47.619 0.50 0.00 43.64 5.19
4093 4524 1.415374 CGTTCCGATATTTCGCCGAT 58.585 50.000 0.00 0.00 44.12 4.18
4094 4525 0.595567 CCGTTCCGATATTTCGCCGA 60.596 55.000 0.00 0.00 44.12 5.54
4095 4526 1.850640 CCGTTCCGATATTTCGCCG 59.149 57.895 0.00 2.49 44.12 6.46
4096 4527 0.878961 AGCCGTTCCGATATTTCGCC 60.879 55.000 0.00 0.00 44.12 5.54
4139 4570 0.034896 AGCACGACGGACCTCAAATT 59.965 50.000 0.00 0.00 0.00 1.82
4176 4607 2.034843 TGCATTACAAGCCCGGCA 59.965 55.556 13.15 0.00 0.00 5.69
4177 4608 2.489751 GTGCATTACAAGCCCGGC 59.510 61.111 0.00 0.00 0.00 6.13
4179 4610 2.100216 GCGTGCATTACAAGCCCG 59.900 61.111 0.00 0.00 46.67 6.13
4183 4614 0.583083 GCGTACGCGTGCATTACAAG 60.583 55.000 26.17 9.73 40.81 3.16
4184 4615 1.416820 GCGTACGCGTGCATTACAA 59.583 52.632 26.17 0.00 40.81 2.41
4185 4616 3.074296 GCGTACGCGTGCATTACA 58.926 55.556 26.17 0.00 40.81 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.