Multiple sequence alignment - TraesCS1A01G277500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G277500 chr1A 100.000 3123 0 0 1 3123 473009505 473012627 0.000000e+00 5768.0
1 TraesCS1A01G277500 chr1A 94.958 119 6 0 1929 2047 387511346 387511464 1.480000e-43 187.0
2 TraesCS1A01G277500 chr1A 93.750 48 1 2 2702 2749 18103832 18103787 1.550000e-08 71.3
3 TraesCS1A01G277500 chr1B 90.834 1931 124 29 42 1941 498630380 498632288 0.000000e+00 2536.0
4 TraesCS1A01G277500 chr1B 91.892 666 44 5 2043 2703 498632285 498632945 0.000000e+00 922.0
5 TraesCS1A01G277500 chr1B 85.047 107 14 2 2952 3056 280206883 280206777 1.180000e-19 108.0
6 TraesCS1A01G277500 chr1D 88.028 1303 105 26 2 1276 373366767 373368046 0.000000e+00 1495.0
7 TraesCS1A01G277500 chr1D 94.277 629 30 4 1307 1933 373368045 373368669 0.000000e+00 957.0
8 TraesCS1A01G277500 chr1D 91.318 311 20 3 2046 2351 373368675 373368983 4.820000e-113 418.0
9 TraesCS1A01G277500 chr4D 92.179 179 7 2 2952 3123 384302661 384302483 2.410000e-61 246.0
10 TraesCS1A01G277500 chr4D 89.855 138 10 4 1908 2044 160742233 160742367 1.150000e-39 174.0
11 TraesCS1A01G277500 chr4D 95.385 65 3 0 2701 2765 501053727 501053663 1.530000e-18 104.0
12 TraesCS1A01G277500 chr2D 89.944 179 11 4 2952 3123 631282164 631281986 1.130000e-54 224.0
13 TraesCS1A01G277500 chr2D 82.558 172 16 6 2952 3109 187043789 187043960 4.200000e-29 139.0
14 TraesCS1A01G277500 chr2D 91.489 94 8 0 2952 3045 275917252 275917345 2.530000e-26 130.0
15 TraesCS1A01G277500 chr2D 93.902 82 5 0 3042 3123 598854172 598854091 1.180000e-24 124.0
16 TraesCS1A01G277500 chr2D 90.769 65 5 1 2702 2765 364829769 364829833 5.550000e-13 86.1
17 TraesCS1A01G277500 chr2A 89.011 182 9 3 2952 3123 31907166 31907346 6.780000e-52 215.0
18 TraesCS1A01G277500 chr2A 93.651 63 4 0 2703 2765 194140867 194140805 9.220000e-16 95.3
19 TraesCS1A01G277500 chr2A 92.000 50 4 0 2700 2749 661726395 661726346 1.550000e-08 71.3
20 TraesCS1A01G277500 chr3D 92.105 152 4 5 2952 3096 42305801 42305951 1.140000e-49 207.0
21 TraesCS1A01G277500 chr3D 97.273 110 3 0 1938 2047 381640915 381640806 1.480000e-43 187.0
22 TraesCS1A01G277500 chr3D 91.473 129 11 0 1919 2047 128992765 128992637 8.900000e-41 178.0
23 TraesCS1A01G277500 chr3B 97.368 114 3 0 1934 2047 70582102 70582215 8.840000e-46 195.0
24 TraesCS1A01G277500 chr3B 95.652 115 5 0 1934 2048 779534219 779534333 5.320000e-43 185.0
25 TraesCS1A01G277500 chr7A 96.522 115 4 0 1938 2052 192671962 192671848 1.140000e-44 191.0
26 TraesCS1A01G277500 chr7A 91.489 94 8 0 2952 3045 670300599 670300692 2.530000e-26 130.0
27 TraesCS1A01G277500 chr2B 95.652 115 5 0 1938 2052 449674801 449674687 5.320000e-43 185.0
28 TraesCS1A01G277500 chr5B 91.603 131 8 3 1930 2059 525451317 525451189 8.900000e-41 178.0
29 TraesCS1A01G277500 chr7D 93.617 94 6 0 2952 3045 577977873 577977780 1.170000e-29 141.0
30 TraesCS1A01G277500 chr5D 93.407 91 6 0 2952 3042 441255204 441255294 5.430000e-28 135.0
31 TraesCS1A01G277500 chr4B 95.122 82 4 0 3042 3123 664526141 664526060 2.530000e-26 130.0
32 TraesCS1A01G277500 chrUn 96.104 77 3 0 3047 3123 408354014 408353938 3.270000e-25 126.0
33 TraesCS1A01G277500 chrUn 96.104 77 3 0 3047 3123 461163722 461163646 3.270000e-25 126.0
34 TraesCS1A01G277500 chrUn 94.805 77 4 0 3047 3123 215572749 215572673 1.520000e-23 121.0
35 TraesCS1A01G277500 chrUn 94.805 77 4 0 3047 3123 374770777 374770853 1.520000e-23 121.0
36 TraesCS1A01G277500 chr5A 93.846 65 4 0 2701 2765 698320824 698320760 7.130000e-17 99.0
37 TraesCS1A01G277500 chr6B 91.489 47 2 2 2703 2749 603237362 603237318 2.600000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G277500 chr1A 473009505 473012627 3122 False 5768.000000 5768 100.000000 1 3123 1 chr1A.!!$F2 3122
1 TraesCS1A01G277500 chr1B 498630380 498632945 2565 False 1729.000000 2536 91.363000 42 2703 2 chr1B.!!$F1 2661
2 TraesCS1A01G277500 chr1D 373366767 373368983 2216 False 956.666667 1495 91.207667 2 2351 3 chr1D.!!$F1 2349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 620 0.037590 AGAAACACGGCAGGCCATTA 59.962 50.0 5.01 0.0 35.37 1.90 F
1660 1707 0.761187 ACCTGCTGCTGAGTCAAAGA 59.239 50.0 8.20 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 1987 1.755380 CTAATTCCGAACGGAGGGAGT 59.245 52.381 15.34 4.12 46.06 3.85 R
2838 2896 0.026803 CGCTGATAGCCGTTTGAAGC 59.973 55.000 0.00 0.00 38.18 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.080129 ACCATGGACTGTTTATGAGCTGAT 60.080 41.667 21.47 0.00 0.00 2.90
105 111 1.380302 GGGCACTGTGGTTCTGGAT 59.620 57.895 10.21 0.00 0.00 3.41
106 112 0.678048 GGGCACTGTGGTTCTGGATC 60.678 60.000 10.21 0.00 0.00 3.36
107 113 0.678048 GGCACTGTGGTTCTGGATCC 60.678 60.000 4.20 4.20 0.00 3.36
108 114 1.021390 GCACTGTGGTTCTGGATCCG 61.021 60.000 10.21 2.06 0.00 4.18
154 162 4.194720 CGGAGCCCGGAGAAGTCG 62.195 72.222 0.73 0.00 44.15 4.18
191 199 1.066908 CCTTCTGAGAGATCGAGTGGC 59.933 57.143 0.00 0.00 0.00 5.01
271 279 1.517257 CCCTAGCTCACGCACGAAG 60.517 63.158 0.00 0.00 39.10 3.79
440 456 4.381932 GGAATTTTTGTTGGATGCGGAGAT 60.382 41.667 0.00 0.00 0.00 2.75
506 524 3.918258 TGCTTAATTGTCGCGTGTATC 57.082 42.857 5.77 0.00 0.00 2.24
514 532 2.526077 TGTCGCGTGTATCTTGCTTAG 58.474 47.619 5.77 0.00 0.00 2.18
522 540 4.394795 GTGTATCTTGCTTAGTTGTTGCG 58.605 43.478 0.00 0.00 0.00 4.85
581 599 4.831314 TCAGGAGATCTGATTTCCCCATA 58.169 43.478 20.26 4.51 46.71 2.74
597 615 1.873591 CCATATAGAAACACGGCAGGC 59.126 52.381 0.00 0.00 0.00 4.85
602 620 0.037590 AGAAACACGGCAGGCCATTA 59.962 50.000 5.01 0.00 35.37 1.90
606 624 1.377202 CACGGCAGGCCATTACTGT 60.377 57.895 5.01 0.00 38.22 3.55
623 642 6.870971 TTACTGTGTGATTCTTGTTTACCC 57.129 37.500 0.00 0.00 0.00 3.69
632 651 6.431234 GTGATTCTTGTTTACCCAGTGAAGAT 59.569 38.462 0.00 0.00 0.00 2.40
633 652 6.430925 TGATTCTTGTTTACCCAGTGAAGATG 59.569 38.462 0.00 0.00 0.00 2.90
635 654 3.500448 TGTTTACCCAGTGAAGATGCA 57.500 42.857 0.00 0.00 0.00 3.96
636 655 3.411446 TGTTTACCCAGTGAAGATGCAG 58.589 45.455 0.00 0.00 0.00 4.41
637 656 3.072330 TGTTTACCCAGTGAAGATGCAGA 59.928 43.478 0.00 0.00 0.00 4.26
638 657 4.072131 GTTTACCCAGTGAAGATGCAGAA 58.928 43.478 0.00 0.00 0.00 3.02
642 661 1.815003 CCAGTGAAGATGCAGAAACCC 59.185 52.381 0.00 0.00 0.00 4.11
679 698 1.068588 TCGAATCTAAGATGCACGGGG 59.931 52.381 0.00 0.00 0.00 5.73
702 725 7.704899 GGGGGATGTTTATTATTGTTCTTTTCG 59.295 37.037 0.00 0.00 0.00 3.46
707 730 8.276060 TGTTTATTATTGTTCTTTTCGTGCAC 57.724 30.769 6.82 6.82 0.00 4.57
712 735 3.840890 TGTTCTTTTCGTGCACAACTT 57.159 38.095 18.64 0.00 0.00 2.66
713 736 3.753842 TGTTCTTTTCGTGCACAACTTC 58.246 40.909 18.64 0.00 0.00 3.01
721 744 3.867665 TCGTGCACAACTTCAATTTACG 58.132 40.909 18.64 0.00 0.00 3.18
742 765 4.883585 ACGTGCATAACTCCATTCATTCAT 59.116 37.500 0.00 0.00 0.00 2.57
746 769 6.916387 GTGCATAACTCCATTCATTCATTCAG 59.084 38.462 0.00 0.00 0.00 3.02
780 807 3.365472 TCATCTCTGATTTCCGAGTGGA 58.635 45.455 0.00 0.00 44.61 4.02
823 850 5.537300 AGTGATTTCATATCGTAGCCACT 57.463 39.130 0.00 0.00 0.00 4.00
867 894 5.418840 ACCCTAGTAATTTTGGCATTCTGTG 59.581 40.000 0.00 0.00 0.00 3.66
884 912 6.601741 TTCTGTGTTTTTGATTTTCCATGC 57.398 33.333 0.00 0.00 0.00 4.06
928 964 4.202202 GGATCTGACAGTACTCCCATCTTG 60.202 50.000 1.59 0.00 0.00 3.02
945 981 6.471146 CCATCTTGAGCATATACTTAGCCTT 58.529 40.000 0.00 0.00 0.00 4.35
961 997 1.544246 GCCTTCCATGCCGTTTAACTT 59.456 47.619 0.00 0.00 0.00 2.66
1014 1050 0.807275 CCACGATGAAGCTGATCGCA 60.807 55.000 22.17 2.82 45.34 5.10
1080 1116 2.417719 GCTGACGTCAAGAACATCCTT 58.582 47.619 20.49 0.00 0.00 3.36
1106 1142 6.365520 ACTCAGGTAATTCTTCTTTGTTGGT 58.634 36.000 0.00 0.00 0.00 3.67
1108 1144 7.342026 ACTCAGGTAATTCTTCTTTGTTGGTTT 59.658 33.333 0.00 0.00 0.00 3.27
1109 1145 8.073467 TCAGGTAATTCTTCTTTGTTGGTTTT 57.927 30.769 0.00 0.00 0.00 2.43
1122 1158 8.354426 TCTTTGTTGGTTTTAAGTTATACTGGC 58.646 33.333 0.00 0.00 0.00 4.85
1134 1170 7.519032 AAGTTATACTGGCTCAGATACTCTC 57.481 40.000 8.91 0.00 35.18 3.20
1143 1179 4.211920 GCTCAGATACTCTCTACTTGGGT 58.788 47.826 0.00 0.00 31.13 4.51
1158 1201 3.118223 ACTTGGGTAATGCCTCTAGCTTC 60.118 47.826 0.00 0.00 44.23 3.86
1159 1202 1.768870 TGGGTAATGCCTCTAGCTTCC 59.231 52.381 0.00 0.00 44.23 3.46
1172 1215 5.099042 TCTAGCTTCCCTTATGGTTTGAC 57.901 43.478 0.00 0.00 34.77 3.18
1173 1216 3.087370 AGCTTCCCTTATGGTTTGACC 57.913 47.619 0.00 0.00 39.22 4.02
1217 1260 9.793252 AAGATAAAATATTTGCTGCACTACTTG 57.207 29.630 0.00 0.00 0.00 3.16
1229 1272 3.969117 CACTACTTGCTGTTTGCTGAA 57.031 42.857 0.00 0.00 43.37 3.02
1230 1273 4.494350 CACTACTTGCTGTTTGCTGAAT 57.506 40.909 0.00 0.00 43.37 2.57
1275 1322 4.021104 CACTTCCAGTCAGGTCATTGAGTA 60.021 45.833 0.00 0.00 39.02 2.59
1383 1430 3.105959 TCATGAGAGGATGTGAGACCA 57.894 47.619 0.00 0.00 0.00 4.02
1660 1707 0.761187 ACCTGCTGCTGAGTCAAAGA 59.239 50.000 8.20 0.00 0.00 2.52
1664 1711 1.417517 TGCTGCTGAGTCAAAGAAGGA 59.582 47.619 0.00 0.00 0.00 3.36
1665 1712 2.075338 GCTGCTGAGTCAAAGAAGGAG 58.925 52.381 6.67 0.86 0.00 3.69
1666 1713 2.697654 CTGCTGAGTCAAAGAAGGAGG 58.302 52.381 0.00 0.00 0.00 4.30
1734 1781 2.887152 ACCTTGCAATGGTTTCTCAGTC 59.113 45.455 12.98 0.00 42.49 3.51
1752 1800 2.706190 AGTCACTTTAGTTCTGTGGCCT 59.294 45.455 3.32 0.00 37.05 5.19
1779 1827 8.723942 AAGTTATTCTAGCTGGACTTACATTG 57.276 34.615 0.00 0.00 0.00 2.82
1836 1884 5.048364 TGTTGTTGTTGCAAGTAGTGACTTT 60.048 36.000 0.00 0.00 43.70 2.66
1849 1897 7.582667 AGTAGTGACTTTTTAGTTTTGGCAT 57.417 32.000 0.00 0.00 28.61 4.40
1855 1903 6.756074 TGACTTTTTAGTTTTGGCATGACAAG 59.244 34.615 14.91 1.51 0.00 3.16
1904 1953 5.665459 TGCAAGTAGAAGCTAGAATTCCTC 58.335 41.667 0.65 0.00 0.00 3.71
1938 1987 7.890515 TGCAAATTGTTAAACCTGATCACATA 58.109 30.769 0.00 0.00 0.00 2.29
1939 1988 7.812191 TGCAAATTGTTAAACCTGATCACATAC 59.188 33.333 0.00 0.00 0.00 2.39
1940 1989 8.028938 GCAAATTGTTAAACCTGATCACATACT 58.971 33.333 0.00 0.00 0.00 2.12
1941 1990 9.559958 CAAATTGTTAAACCTGATCACATACTC 57.440 33.333 0.00 0.00 0.00 2.59
1942 1991 7.865706 ATTGTTAAACCTGATCACATACTCC 57.134 36.000 0.00 0.00 0.00 3.85
1943 1992 5.741011 TGTTAAACCTGATCACATACTCCC 58.259 41.667 0.00 0.00 0.00 4.30
1944 1993 5.487488 TGTTAAACCTGATCACATACTCCCT 59.513 40.000 0.00 0.00 0.00 4.20
1945 1994 4.762289 AAACCTGATCACATACTCCCTC 57.238 45.455 0.00 0.00 0.00 4.30
1946 1995 2.683768 ACCTGATCACATACTCCCTCC 58.316 52.381 0.00 0.00 0.00 4.30
1947 1996 1.615883 CCTGATCACATACTCCCTCCG 59.384 57.143 0.00 0.00 0.00 4.63
1948 1997 2.311463 CTGATCACATACTCCCTCCGT 58.689 52.381 0.00 0.00 0.00 4.69
1949 1998 2.695666 CTGATCACATACTCCCTCCGTT 59.304 50.000 0.00 0.00 0.00 4.44
1950 1999 2.693591 TGATCACATACTCCCTCCGTTC 59.306 50.000 0.00 0.00 0.00 3.95
1951 2000 1.100510 TCACATACTCCCTCCGTTCG 58.899 55.000 0.00 0.00 0.00 3.95
1952 2001 0.102481 CACATACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
1953 2002 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
1954 2003 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
1955 2004 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
1956 2005 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
1957 2006 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1958 2007 1.755380 ACTCCCTCCGTTCGGAATTAG 59.245 52.381 14.79 13.09 33.41 1.73
1959 2008 1.755380 CTCCCTCCGTTCGGAATTAGT 59.245 52.381 14.79 0.00 33.41 2.24
1960 2009 2.167900 CTCCCTCCGTTCGGAATTAGTT 59.832 50.000 14.79 0.00 33.41 2.24
1961 2010 2.093869 TCCCTCCGTTCGGAATTAGTTG 60.094 50.000 14.79 1.97 33.41 3.16
1962 2011 2.354403 CCCTCCGTTCGGAATTAGTTGT 60.354 50.000 14.79 0.00 33.41 3.32
1963 2012 2.928116 CCTCCGTTCGGAATTAGTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1964 2013 3.368116 CCTCCGTTCGGAATTAGTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1965 2014 3.841643 TCCGTTCGGAATTAGTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1966 2015 2.597305 CCGTTCGGAATTAGTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1967 2016 3.495193 CGTTCGGAATTAGTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
1968 2017 3.916172 CGTTCGGAATTAGTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
1969 2018 4.383649 CGTTCGGAATTAGTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
1970 2019 5.107760 CGTTCGGAATTAGTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
1971 2020 6.400727 CGTTCGGAATTAGTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
1972 2021 6.403333 TCGGAATTAGTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
1973 2022 5.350365 TCGGAATTAGTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
1974 2023 5.350365 CGGAATTAGTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
1975 2024 6.037172 CGGAATTAGTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
1976 2025 7.189512 GGAATTAGTTGTCTCGAAAATGGATG 58.810 38.462 0.00 0.00 0.00 3.51
1977 2026 7.148239 GGAATTAGTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
1978 2027 8.786826 AATTAGTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
1979 2028 8.964476 ATTAGTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
1980 2029 6.910536 AGTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
1981 2030 6.644347 AGTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
1982 2031 7.782049 AGTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
1983 2032 7.923344 AGTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
1984 2033 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
1985 2034 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
1986 2035 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
1987 2036 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
1988 2037 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
1989 2038 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
2015 2064 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
2016 2065 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
2017 2066 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
2018 2067 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
2019 2068 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
2020 2069 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2021 2070 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2022 2071 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2023 2072 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2024 2073 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2025 2074 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2026 2075 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
2027 2076 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2028 2077 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2029 2078 5.245531 TCCATTTCTGCGACAAGTAATTCT 58.754 37.500 0.00 0.00 0.00 2.40
2030 2079 5.122239 TCCATTTCTGCGACAAGTAATTCTG 59.878 40.000 0.00 0.00 0.00 3.02
2031 2080 5.122239 CCATTTCTGCGACAAGTAATTCTGA 59.878 40.000 0.00 0.00 0.00 3.27
2032 2081 6.348458 CCATTTCTGCGACAAGTAATTCTGAA 60.348 38.462 0.00 0.00 0.00 3.02
2033 2082 5.591643 TTCTGCGACAAGTAATTCTGAAC 57.408 39.130 0.00 0.00 0.00 3.18
2034 2083 4.627058 TCTGCGACAAGTAATTCTGAACA 58.373 39.130 0.00 0.00 0.00 3.18
2035 2084 4.686091 TCTGCGACAAGTAATTCTGAACAG 59.314 41.667 0.00 0.00 0.00 3.16
2036 2085 4.627058 TGCGACAAGTAATTCTGAACAGA 58.373 39.130 0.00 0.00 35.27 3.41
2037 2086 4.686091 TGCGACAAGTAATTCTGAACAGAG 59.314 41.667 4.72 0.00 38.88 3.35
2038 2087 4.092091 GCGACAAGTAATTCTGAACAGAGG 59.908 45.833 4.72 0.00 38.88 3.69
2039 2088 4.627467 CGACAAGTAATTCTGAACAGAGGG 59.373 45.833 4.72 0.00 38.88 4.30
2040 2089 5.566826 CGACAAGTAATTCTGAACAGAGGGA 60.567 44.000 4.72 0.00 38.88 4.20
2041 2090 5.799213 ACAAGTAATTCTGAACAGAGGGAG 58.201 41.667 4.72 0.00 38.88 4.30
2042 2091 5.308237 ACAAGTAATTCTGAACAGAGGGAGT 59.692 40.000 4.72 0.00 38.88 3.85
2059 2108 8.424918 CAGAGGGAGTACTTGTATGTGAATTAT 58.575 37.037 0.00 0.00 0.00 1.28
2201 2250 1.585267 CCACAACAGCGCCTGCATAA 61.585 55.000 2.29 0.00 46.23 1.90
2202 2251 0.452987 CACAACAGCGCCTGCATAAT 59.547 50.000 2.29 0.00 46.23 1.28
2215 2266 5.659463 GCCTGCATAATATCTAGAGACCTG 58.341 45.833 0.00 0.00 0.00 4.00
2298 2349 2.876219 GCTTCTGCAGCCTTGAGC 59.124 61.111 9.47 9.22 43.65 4.26
2312 2363 5.314923 GCCTTGAGCAGTTGATTGATAAA 57.685 39.130 0.00 0.00 42.97 1.40
2316 2367 6.755141 CCTTGAGCAGTTGATTGATAAATTGG 59.245 38.462 0.00 0.00 0.00 3.16
2319 2370 6.209192 TGAGCAGTTGATTGATAAATTGGTGT 59.791 34.615 0.00 0.00 0.00 4.16
2321 2372 8.121305 AGCAGTTGATTGATAAATTGGTGTTA 57.879 30.769 0.00 0.00 0.00 2.41
2323 2374 8.810427 GCAGTTGATTGATAAATTGGTGTTATG 58.190 33.333 0.00 0.00 0.00 1.90
2324 2375 9.859427 CAGTTGATTGATAAATTGGTGTTATGT 57.141 29.630 0.00 0.00 0.00 2.29
2330 2382 9.787532 ATTGATAAATTGGTGTTATGTTTCTCG 57.212 29.630 0.00 0.00 0.00 4.04
2332 2384 5.446143 AAATTGGTGTTATGTTTCTCGCA 57.554 34.783 0.00 0.00 0.00 5.10
2333 2385 5.643379 AATTGGTGTTATGTTTCTCGCAT 57.357 34.783 0.00 0.00 0.00 4.73
2355 2411 3.186702 TGTCTTGATGTTTGTGGTCGA 57.813 42.857 0.00 0.00 0.00 4.20
2359 2415 4.213270 GTCTTGATGTTTGTGGTCGATGAA 59.787 41.667 0.00 0.00 0.00 2.57
2370 2426 2.076100 GGTCGATGAAAGTGCACATGA 58.924 47.619 21.04 1.39 0.00 3.07
2371 2427 2.679837 GGTCGATGAAAGTGCACATGAT 59.320 45.455 21.04 6.98 0.00 2.45
2385 2441 5.571741 GTGCACATGATCTTTTGATGTTCTG 59.428 40.000 13.17 0.00 39.67 3.02
2422 2478 6.432162 TGGTGAAAGGATCTTGATTTTCTCTG 59.568 38.462 0.00 0.00 32.28 3.35
2426 2482 7.173907 TGAAAGGATCTTGATTTTCTCTGTGAC 59.826 37.037 0.00 0.00 32.28 3.67
2448 2504 3.698040 CTGAATGGGTTTTCTCTGGGATG 59.302 47.826 0.00 0.00 0.00 3.51
2524 2582 1.957177 ACACTCGCTTCTCTGAACAGA 59.043 47.619 4.45 4.45 35.85 3.41
2525 2583 2.560542 ACACTCGCTTCTCTGAACAGAT 59.439 45.455 4.96 0.00 36.76 2.90
2541 2599 7.346698 TCTGAACAGATAAAGGAGAATGGAGAT 59.653 37.037 0.00 0.00 31.41 2.75
2545 2603 6.060136 CAGATAAAGGAGAATGGAGATGCAA 58.940 40.000 0.00 0.00 0.00 4.08
2552 2610 5.131642 AGGAGAATGGAGATGCAAACATAGA 59.868 40.000 0.00 0.00 36.35 1.98
2558 2616 7.649533 ATGGAGATGCAAACATAGATTTGAA 57.350 32.000 0.00 0.00 41.28 2.69
2573 2631 9.520204 CATAGATTTGAATAAATTGGTGGACAC 57.480 33.333 0.00 0.00 36.66 3.67
2582 2640 5.413309 AAATTGGTGGACACTTTTTGACA 57.587 34.783 2.13 0.00 28.70 3.58
2593 2651 9.829507 TGGACACTTTTTGACAAATATTTCATT 57.170 25.926 0.50 0.00 0.00 2.57
2650 2708 1.737793 GGGGTATTGTGAGCTTTGACG 59.262 52.381 0.00 0.00 0.00 4.35
2677 2735 2.225019 CACCAGAAACAGCAGACATCAC 59.775 50.000 0.00 0.00 0.00 3.06
2689 2747 2.862536 CAGACATCACCTGCGATACTTG 59.137 50.000 0.00 0.00 0.00 3.16
2692 2750 1.863454 CATCACCTGCGATACTTGAGC 59.137 52.381 0.00 0.00 0.00 4.26
2703 2761 3.868077 CGATACTTGAGCAAAGAGGAAGG 59.132 47.826 6.20 0.00 39.38 3.46
2704 2762 2.575805 ACTTGAGCAAAGAGGAAGGG 57.424 50.000 6.20 0.00 39.38 3.95
2705 2763 1.172175 CTTGAGCAAAGAGGAAGGGC 58.828 55.000 0.00 0.00 38.24 5.19
2706 2764 0.606401 TTGAGCAAAGAGGAAGGGCG 60.606 55.000 0.00 0.00 0.00 6.13
2707 2765 1.296715 GAGCAAAGAGGAAGGGCGA 59.703 57.895 0.00 0.00 0.00 5.54
2708 2766 0.107459 GAGCAAAGAGGAAGGGCGAT 60.107 55.000 0.00 0.00 0.00 4.58
2709 2767 0.393537 AGCAAAGAGGAAGGGCGATG 60.394 55.000 0.00 0.00 0.00 3.84
2710 2768 1.997928 GCAAAGAGGAAGGGCGATGC 61.998 60.000 0.00 0.00 0.00 3.91
2711 2769 0.393537 CAAAGAGGAAGGGCGATGCT 60.394 55.000 0.00 0.00 0.00 3.79
2712 2770 1.134401 CAAAGAGGAAGGGCGATGCTA 60.134 52.381 0.00 0.00 0.00 3.49
2713 2771 0.755686 AAGAGGAAGGGCGATGCTAG 59.244 55.000 0.00 0.00 0.00 3.42
2714 2772 1.118356 AGAGGAAGGGCGATGCTAGG 61.118 60.000 0.00 0.00 0.00 3.02
2715 2773 1.383248 AGGAAGGGCGATGCTAGGT 60.383 57.895 0.00 0.00 0.00 3.08
2716 2774 1.227674 GGAAGGGCGATGCTAGGTG 60.228 63.158 0.00 0.00 0.00 4.00
2717 2775 1.889573 GAAGGGCGATGCTAGGTGC 60.890 63.158 0.00 0.00 43.25 5.01
2718 2776 3.406595 AAGGGCGATGCTAGGTGCC 62.407 63.158 0.00 0.00 46.82 5.01
2737 2795 3.660111 GCGCACCGGCTGAAAGTT 61.660 61.111 0.30 0.00 38.10 2.66
2738 2796 3.030652 CGCACCGGCTGAAAGTTT 58.969 55.556 0.00 0.00 38.10 2.66
2739 2797 1.358759 CGCACCGGCTGAAAGTTTT 59.641 52.632 0.00 0.00 38.10 2.43
2740 2798 0.934436 CGCACCGGCTGAAAGTTTTG 60.934 55.000 0.00 0.00 38.10 2.44
2741 2799 0.597377 GCACCGGCTGAAAGTTTTGG 60.597 55.000 0.00 0.00 36.96 3.28
2742 2800 0.597377 CACCGGCTGAAAGTTTTGGC 60.597 55.000 0.00 5.52 35.30 4.52
2743 2801 1.006220 CCGGCTGAAAGTTTTGGCC 60.006 57.895 17.48 17.48 39.43 5.36
2744 2802 4.653555 GGCTGAAAGTTTTGGCCG 57.346 55.556 14.16 0.00 35.30 6.13
2745 2803 1.006220 GGCTGAAAGTTTTGGCCGG 60.006 57.895 14.16 0.00 35.30 6.13
2746 2804 1.739667 GCTGAAAGTTTTGGCCGGT 59.260 52.632 1.90 0.00 35.30 5.28
2747 2805 0.318699 GCTGAAAGTTTTGGCCGGTC 60.319 55.000 0.00 0.00 35.30 4.79
2748 2806 0.313987 CTGAAAGTTTTGGCCGGTCC 59.686 55.000 2.12 5.67 0.00 4.46
2749 2807 0.106419 TGAAAGTTTTGGCCGGTCCT 60.106 50.000 2.12 0.00 35.26 3.85
2750 2808 0.313987 GAAAGTTTTGGCCGGTCCTG 59.686 55.000 2.12 0.00 35.26 3.86
2751 2809 1.744320 AAAGTTTTGGCCGGTCCTGC 61.744 55.000 2.12 0.00 35.26 4.85
2762 2820 4.748144 GTCCTGCCCCAGCCCTTG 62.748 72.222 0.00 0.00 38.69 3.61
2776 2834 4.644498 CAGCCCTTGGAAAAATGATTTGT 58.356 39.130 0.00 0.00 0.00 2.83
2777 2835 4.692155 CAGCCCTTGGAAAAATGATTTGTC 59.308 41.667 0.00 0.00 0.00 3.18
2778 2836 4.002982 GCCCTTGGAAAAATGATTTGTCC 58.997 43.478 18.27 18.27 0.00 4.02
2779 2837 4.263025 GCCCTTGGAAAAATGATTTGTCCT 60.263 41.667 23.71 0.00 32.01 3.85
2780 2838 5.240121 CCCTTGGAAAAATGATTTGTCCTG 58.760 41.667 23.71 16.92 32.01 3.86
2781 2839 5.240121 CCTTGGAAAAATGATTTGTCCTGG 58.760 41.667 23.71 20.69 32.01 4.45
2782 2840 5.011943 CCTTGGAAAAATGATTTGTCCTGGA 59.988 40.000 23.71 11.62 31.70 3.86
2783 2841 6.296030 CCTTGGAAAAATGATTTGTCCTGGAT 60.296 38.462 23.71 0.00 31.70 3.41
2784 2842 6.040209 TGGAAAAATGATTTGTCCTGGATG 57.960 37.500 23.71 0.00 32.01 3.51
2785 2843 4.872124 GGAAAAATGATTTGTCCTGGATGC 59.128 41.667 17.91 0.00 0.00 3.91
2786 2844 3.788333 AAATGATTTGTCCTGGATGCG 57.212 42.857 0.00 0.00 0.00 4.73
2787 2845 1.683943 ATGATTTGTCCTGGATGCGG 58.316 50.000 0.00 0.00 0.00 5.69
2788 2846 0.617935 TGATTTGTCCTGGATGCGGA 59.382 50.000 0.00 0.00 0.00 5.54
2789 2847 1.004161 TGATTTGTCCTGGATGCGGAA 59.996 47.619 0.00 0.00 31.13 4.30
2790 2848 2.091541 GATTTGTCCTGGATGCGGAAA 58.908 47.619 0.00 0.00 31.13 3.13
2791 2849 1.988293 TTTGTCCTGGATGCGGAAAA 58.012 45.000 0.00 0.00 31.13 2.29
2792 2850 1.988293 TTGTCCTGGATGCGGAAAAA 58.012 45.000 0.00 0.00 31.13 1.94
2809 2867 3.305398 AAAAAGTTGCCAACGTTGACA 57.695 38.095 29.35 21.81 33.41 3.58
2810 2868 3.518634 AAAAGTTGCCAACGTTGACAT 57.481 38.095 29.35 10.02 33.41 3.06
2811 2869 4.640789 AAAAGTTGCCAACGTTGACATA 57.359 36.364 29.35 11.91 33.41 2.29
2812 2870 4.640789 AAAGTTGCCAACGTTGACATAA 57.359 36.364 29.35 14.57 36.23 1.90
2813 2871 4.640789 AAGTTGCCAACGTTGACATAAA 57.359 36.364 29.35 6.61 36.23 1.40
2814 2872 4.640789 AGTTGCCAACGTTGACATAAAA 57.359 36.364 29.35 6.22 36.23 1.52
2815 2873 5.000012 AGTTGCCAACGTTGACATAAAAA 58.000 34.783 29.35 5.82 36.23 1.94
2816 2874 5.040635 AGTTGCCAACGTTGACATAAAAAG 58.959 37.500 29.35 10.19 36.23 2.27
2817 2875 4.640789 TGCCAACGTTGACATAAAAAGT 57.359 36.364 29.35 0.00 0.00 2.66
2818 2876 5.000012 TGCCAACGTTGACATAAAAAGTT 58.000 34.783 29.35 0.00 30.80 2.66
2819 2877 5.411781 TGCCAACGTTGACATAAAAAGTTT 58.588 33.333 29.35 0.00 28.65 2.66
2820 2878 5.517054 TGCCAACGTTGACATAAAAAGTTTC 59.483 36.000 29.35 0.00 28.65 2.78
2821 2879 5.517054 GCCAACGTTGACATAAAAAGTTTCA 59.483 36.000 29.35 0.00 28.65 2.69
2822 2880 6.035112 GCCAACGTTGACATAAAAAGTTTCAA 59.965 34.615 29.35 0.00 28.65 2.69
2823 2881 7.387945 CCAACGTTGACATAAAAAGTTTCAAC 58.612 34.615 29.35 5.99 41.67 3.18
2824 2882 7.387945 CAACGTTGACATAAAAAGTTTCAACC 58.612 34.615 23.90 0.00 41.94 3.77
2825 2883 5.740099 ACGTTGACATAAAAAGTTTCAACCG 59.260 36.000 9.26 7.65 41.94 4.44
2826 2884 5.740099 CGTTGACATAAAAAGTTTCAACCGT 59.260 36.000 9.26 0.00 41.94 4.83
2827 2885 6.906143 CGTTGACATAAAAAGTTTCAACCGTA 59.094 34.615 9.26 0.00 41.94 4.02
2828 2886 7.588488 CGTTGACATAAAAAGTTTCAACCGTAT 59.412 33.333 9.26 0.00 41.94 3.06
2829 2887 9.881529 GTTGACATAAAAAGTTTCAACCGTATA 57.118 29.630 5.04 0.00 40.01 1.47
2838 2896 9.893305 AAAAGTTTCAACCGTATATGAGAAAAG 57.107 29.630 0.00 0.00 0.00 2.27
2839 2897 7.073342 AGTTTCAACCGTATATGAGAAAAGC 57.927 36.000 0.00 0.00 0.00 3.51
2840 2898 6.879458 AGTTTCAACCGTATATGAGAAAAGCT 59.121 34.615 0.00 0.00 0.00 3.74
2841 2899 7.390718 AGTTTCAACCGTATATGAGAAAAGCTT 59.609 33.333 0.00 0.00 0.00 3.74
2842 2900 6.903883 TCAACCGTATATGAGAAAAGCTTC 57.096 37.500 0.00 0.00 0.00 3.86
2843 2901 6.403049 TCAACCGTATATGAGAAAAGCTTCA 58.597 36.000 0.00 0.00 33.64 3.02
2844 2902 6.876789 TCAACCGTATATGAGAAAAGCTTCAA 59.123 34.615 0.00 0.00 33.64 2.69
2845 2903 7.389330 TCAACCGTATATGAGAAAAGCTTCAAA 59.611 33.333 0.00 0.00 33.64 2.69
2846 2904 7.073342 ACCGTATATGAGAAAAGCTTCAAAC 57.927 36.000 0.00 0.00 33.64 2.93
2847 2905 6.183360 ACCGTATATGAGAAAAGCTTCAAACG 60.183 38.462 0.00 5.85 33.64 3.60
2848 2906 6.185399 CGTATATGAGAAAAGCTTCAAACGG 58.815 40.000 0.00 0.00 33.64 4.44
2849 2907 2.774439 TGAGAAAAGCTTCAAACGGC 57.226 45.000 0.00 0.00 33.64 5.68
2850 2908 2.297701 TGAGAAAAGCTTCAAACGGCT 58.702 42.857 0.00 0.00 40.85 5.52
2851 2909 3.472652 TGAGAAAAGCTTCAAACGGCTA 58.527 40.909 0.00 0.00 37.87 3.93
2852 2910 4.072131 TGAGAAAAGCTTCAAACGGCTAT 58.928 39.130 0.00 0.00 37.87 2.97
2853 2911 4.154195 TGAGAAAAGCTTCAAACGGCTATC 59.846 41.667 0.00 0.00 37.87 2.08
2854 2912 4.072131 AGAAAAGCTTCAAACGGCTATCA 58.928 39.130 0.00 0.00 37.87 2.15
2855 2913 4.154918 AGAAAAGCTTCAAACGGCTATCAG 59.845 41.667 0.00 0.00 37.87 2.90
2856 2914 1.373570 AGCTTCAAACGGCTATCAGC 58.626 50.000 0.00 0.00 41.46 4.26
2857 2915 0.026803 GCTTCAAACGGCTATCAGCG 59.973 55.000 0.00 0.00 43.62 5.18
2858 2916 1.640428 CTTCAAACGGCTATCAGCGA 58.360 50.000 0.00 0.00 43.62 4.93
2859 2917 1.324736 CTTCAAACGGCTATCAGCGAC 59.675 52.381 0.00 0.00 43.62 5.19
2860 2918 0.245266 TCAAACGGCTATCAGCGACA 59.755 50.000 0.00 0.00 43.62 4.35
2861 2919 1.075542 CAAACGGCTATCAGCGACAA 58.924 50.000 0.00 0.00 43.62 3.18
2862 2920 1.463056 CAAACGGCTATCAGCGACAAA 59.537 47.619 0.00 0.00 43.62 2.83
2863 2921 1.803334 AACGGCTATCAGCGACAAAA 58.197 45.000 0.00 0.00 43.62 2.44
2864 2922 1.803334 ACGGCTATCAGCGACAAAAA 58.197 45.000 0.00 0.00 43.62 1.94
2882 2940 2.577449 AAAGTTTTGGTTGCAGTCCG 57.423 45.000 5.72 0.00 0.00 4.79
2883 2941 0.102300 AAGTTTTGGTTGCAGTCCGC 59.898 50.000 5.72 0.00 42.89 5.54
2884 2942 1.657181 GTTTTGGTTGCAGTCCGCG 60.657 57.895 0.00 0.00 46.97 6.46
2885 2943 3.477224 TTTTGGTTGCAGTCCGCGC 62.477 57.895 0.00 0.00 46.97 6.86
2901 2959 4.980805 GCGCGGTCACCTTGGTCA 62.981 66.667 8.83 0.00 0.00 4.02
2902 2960 2.047274 CGCGGTCACCTTGGTCAT 60.047 61.111 0.00 0.00 0.00 3.06
2903 2961 2.100631 CGCGGTCACCTTGGTCATC 61.101 63.158 0.00 0.00 0.00 2.92
2904 2962 2.100631 GCGGTCACCTTGGTCATCG 61.101 63.158 0.00 0.00 0.00 3.84
2905 2963 1.292223 CGGTCACCTTGGTCATCGT 59.708 57.895 0.00 0.00 0.00 3.73
2906 2964 0.736325 CGGTCACCTTGGTCATCGTC 60.736 60.000 0.00 0.00 0.00 4.20
2907 2965 0.736325 GGTCACCTTGGTCATCGTCG 60.736 60.000 0.00 0.00 0.00 5.12
2908 2966 0.038526 GTCACCTTGGTCATCGTCGT 60.039 55.000 0.00 0.00 0.00 4.34
2909 2967 0.242825 TCACCTTGGTCATCGTCGTC 59.757 55.000 0.00 0.00 0.00 4.20
2910 2968 1.071019 CACCTTGGTCATCGTCGTCG 61.071 60.000 0.00 0.00 38.55 5.12
2911 2969 2.158959 CCTTGGTCATCGTCGTCGC 61.159 63.158 0.00 0.00 36.96 5.19
2912 2970 2.497092 CTTGGTCATCGTCGTCGCG 61.497 63.158 0.00 0.00 36.96 5.87
2915 2973 3.887327 GTCATCGTCGTCGCGCAC 61.887 66.667 8.75 3.87 36.96 5.34
2940 2998 3.670377 GCCACGGGGTTGAAGCAC 61.670 66.667 5.12 0.00 36.17 4.40
2941 2999 2.203280 CCACGGGGTTGAAGCACA 60.203 61.111 0.00 0.00 0.00 4.57
2942 3000 1.603455 CCACGGGGTTGAAGCACAT 60.603 57.895 0.00 0.00 0.00 3.21
2943 3001 1.580942 CACGGGGTTGAAGCACATG 59.419 57.895 0.00 0.00 0.00 3.21
2944 3002 1.603455 ACGGGGTTGAAGCACATGG 60.603 57.895 0.00 0.00 0.00 3.66
2945 3003 1.303236 CGGGGTTGAAGCACATGGA 60.303 57.895 0.00 0.00 0.00 3.41
2946 3004 1.586154 CGGGGTTGAAGCACATGGAC 61.586 60.000 0.00 0.00 0.00 4.02
2947 3005 0.539438 GGGGTTGAAGCACATGGACA 60.539 55.000 0.00 0.00 0.00 4.02
2948 3006 1.549203 GGGTTGAAGCACATGGACAT 58.451 50.000 0.00 0.00 0.00 3.06
2949 3007 1.474077 GGGTTGAAGCACATGGACATC 59.526 52.381 0.00 0.00 0.00 3.06
2950 3008 1.131126 GGTTGAAGCACATGGACATCG 59.869 52.381 0.00 0.00 0.00 3.84
2951 3009 0.804364 TTGAAGCACATGGACATCGC 59.196 50.000 0.00 0.00 0.00 4.58
2952 3010 1.026182 TGAAGCACATGGACATCGCC 61.026 55.000 0.00 0.00 0.00 5.54
2953 3011 1.718757 GAAGCACATGGACATCGCCC 61.719 60.000 0.00 0.00 0.00 6.13
2954 3012 3.211963 GCACATGGACATCGCCCC 61.212 66.667 0.00 0.00 0.00 5.80
2955 3013 2.896854 CACATGGACATCGCCCCG 60.897 66.667 0.00 0.00 0.00 5.73
2956 3014 4.175337 ACATGGACATCGCCCCGG 62.175 66.667 0.00 0.00 0.00 5.73
2978 3036 4.972733 TGCGGGGTTGCAGCACAT 62.973 61.111 4.80 0.00 40.62 3.21
2979 3037 4.424566 GCGGGGTTGCAGCACATG 62.425 66.667 4.80 0.00 34.15 3.21
2980 3038 3.751246 CGGGGTTGCAGCACATGG 61.751 66.667 4.80 0.00 0.00 3.66
2981 3039 2.283101 GGGGTTGCAGCACATGGA 60.283 61.111 4.80 0.00 0.00 3.41
2982 3040 2.639327 GGGGTTGCAGCACATGGAC 61.639 63.158 4.80 0.00 0.00 4.02
2983 3041 1.902918 GGGTTGCAGCACATGGACA 60.903 57.895 2.05 0.00 0.00 4.02
2984 3042 1.252904 GGGTTGCAGCACATGGACAT 61.253 55.000 2.05 0.00 0.00 3.06
2985 3043 0.171903 GGTTGCAGCACATGGACATC 59.828 55.000 2.05 0.00 0.00 3.06
2986 3044 0.179181 GTTGCAGCACATGGACATCG 60.179 55.000 0.00 0.00 0.00 3.84
2987 3045 1.925415 TTGCAGCACATGGACATCGC 61.925 55.000 0.00 0.00 0.00 4.58
2988 3046 3.104766 CAGCACATGGACATCGCC 58.895 61.111 0.00 0.00 0.00 5.54
2989 3047 2.512286 AGCACATGGACATCGCCG 60.512 61.111 0.00 0.00 0.00 6.46
2990 3048 2.819595 GCACATGGACATCGCCGT 60.820 61.111 0.00 0.00 0.00 5.68
2992 3050 2.125147 ACATGGACATCGCCGTGG 60.125 61.111 0.00 0.00 46.89 4.94
2993 3051 2.125147 CATGGACATCGCCGTGGT 60.125 61.111 0.00 0.00 40.52 4.16
2994 3052 1.142965 CATGGACATCGCCGTGGTA 59.857 57.895 0.00 0.00 40.52 3.25
2995 3053 0.875908 CATGGACATCGCCGTGGTAG 60.876 60.000 0.00 0.00 40.52 3.18
2996 3054 2.585247 GGACATCGCCGTGGTAGC 60.585 66.667 0.00 0.00 0.00 3.58
2997 3055 2.183300 GACATCGCCGTGGTAGCA 59.817 61.111 0.00 0.00 0.00 3.49
2998 3056 1.447140 GACATCGCCGTGGTAGCAA 60.447 57.895 0.00 0.00 0.00 3.91
2999 3057 1.693083 GACATCGCCGTGGTAGCAAC 61.693 60.000 0.00 0.00 0.00 4.17
3000 3058 2.125269 ATCGCCGTGGTAGCAACC 60.125 61.111 0.00 0.00 46.98 3.77
3001 3059 3.675619 ATCGCCGTGGTAGCAACCC 62.676 63.158 0.00 0.00 46.16 4.11
3003 3061 4.692475 GCCGTGGTAGCAACCCGT 62.692 66.667 0.00 0.00 46.16 5.28
3004 3062 2.433664 CCGTGGTAGCAACCCGTC 60.434 66.667 0.00 0.00 46.16 4.79
3005 3063 2.807895 CGTGGTAGCAACCCGTCG 60.808 66.667 0.00 0.00 46.16 5.12
3006 3064 2.341176 GTGGTAGCAACCCGTCGT 59.659 61.111 0.00 0.00 46.16 4.34
3007 3065 1.735559 GTGGTAGCAACCCGTCGTC 60.736 63.158 0.00 0.00 46.16 4.20
3008 3066 2.125793 GGTAGCAACCCGTCGTCC 60.126 66.667 0.00 0.00 40.21 4.79
3009 3067 2.643232 GGTAGCAACCCGTCGTCCT 61.643 63.158 0.00 0.00 40.21 3.85
3010 3068 1.153881 GTAGCAACCCGTCGTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
3011 3069 2.693762 TAGCAACCCGTCGTCCTCG 61.694 63.158 0.00 0.00 38.55 4.63
3013 3071 3.677648 CAACCCGTCGTCCTCGGT 61.678 66.667 3.78 0.00 45.63 4.69
3014 3072 2.914097 AACCCGTCGTCCTCGGTT 60.914 61.111 3.78 0.00 45.63 4.44
3015 3073 3.216944 AACCCGTCGTCCTCGGTTG 62.217 63.158 2.54 0.00 45.63 3.77
3017 3075 4.351938 CCGTCGTCCTCGGTTGCA 62.352 66.667 0.00 0.00 42.62 4.08
3018 3076 2.805353 CGTCGTCCTCGGTTGCAG 60.805 66.667 0.00 0.00 37.69 4.41
3019 3077 3.112709 GTCGTCCTCGGTTGCAGC 61.113 66.667 0.00 0.00 37.69 5.25
3020 3078 3.611674 TCGTCCTCGGTTGCAGCA 61.612 61.111 2.05 0.00 37.69 4.41
3021 3079 2.434884 CGTCCTCGGTTGCAGCAT 60.435 61.111 2.05 0.00 0.00 3.79
3022 3080 2.456119 CGTCCTCGGTTGCAGCATC 61.456 63.158 2.05 0.00 0.00 3.91
3023 3081 1.078848 GTCCTCGGTTGCAGCATCT 60.079 57.895 2.05 0.00 0.00 2.90
3024 3082 1.086634 GTCCTCGGTTGCAGCATCTC 61.087 60.000 2.05 0.00 0.00 2.75
3025 3083 1.817099 CCTCGGTTGCAGCATCTCC 60.817 63.158 2.05 0.00 0.00 3.71
3026 3084 1.817099 CTCGGTTGCAGCATCTCCC 60.817 63.158 2.05 0.00 0.00 4.30
3027 3085 2.046023 CGGTTGCAGCATCTCCCA 60.046 61.111 2.05 0.00 0.00 4.37
3028 3086 1.452651 CGGTTGCAGCATCTCCCAT 60.453 57.895 2.05 0.00 0.00 4.00
3029 3087 1.721664 CGGTTGCAGCATCTCCCATG 61.722 60.000 2.05 0.00 0.00 3.66
3030 3088 1.389609 GGTTGCAGCATCTCCCATGG 61.390 60.000 4.14 4.14 0.00 3.66
3031 3089 0.682209 GTTGCAGCATCTCCCATGGT 60.682 55.000 11.73 0.00 0.00 3.55
3032 3090 0.394762 TTGCAGCATCTCCCATGGTC 60.395 55.000 11.73 0.00 0.00 4.02
3033 3091 1.225426 GCAGCATCTCCCATGGTCA 59.775 57.895 11.73 0.00 0.00 4.02
3034 3092 1.099879 GCAGCATCTCCCATGGTCAC 61.100 60.000 11.73 0.00 0.00 3.67
3035 3093 0.465097 CAGCATCTCCCATGGTCACC 60.465 60.000 11.73 0.00 0.00 4.02
3036 3094 1.152881 GCATCTCCCATGGTCACCC 60.153 63.158 11.73 0.00 0.00 4.61
3037 3095 1.533711 CATCTCCCATGGTCACCCC 59.466 63.158 11.73 0.00 0.00 4.95
3038 3096 2.072487 ATCTCCCATGGTCACCCCG 61.072 63.158 11.73 0.00 35.15 5.73
3039 3097 3.797353 CTCCCATGGTCACCCCGG 61.797 72.222 11.73 0.00 35.15 5.73
3040 3098 4.667935 TCCCATGGTCACCCCGGT 62.668 66.667 11.73 0.00 35.15 5.28
3041 3099 4.109675 CCCATGGTCACCCCGGTC 62.110 72.222 11.73 0.00 35.15 4.79
3042 3100 4.467084 CCATGGTCACCCCGGTCG 62.467 72.222 2.57 0.00 35.15 4.79
3050 3108 4.791069 ACCCCGGTCGCCCTACAT 62.791 66.667 0.00 0.00 0.00 2.29
3051 3109 4.235762 CCCCGGTCGCCCTACATG 62.236 72.222 0.00 0.00 0.00 3.21
3052 3110 4.235762 CCCGGTCGCCCTACATGG 62.236 72.222 0.00 0.00 0.00 3.66
3053 3111 3.151710 CCGGTCGCCCTACATGGA 61.152 66.667 0.00 0.00 38.35 3.41
3054 3112 2.507854 CCGGTCGCCCTACATGGAT 61.508 63.158 0.00 0.00 38.35 3.41
3055 3113 1.300931 CGGTCGCCCTACATGGATG 60.301 63.158 0.00 0.00 38.35 3.51
3056 3114 1.830145 GGTCGCCCTACATGGATGT 59.170 57.895 0.00 0.00 44.48 3.06
3057 3115 1.045407 GGTCGCCCTACATGGATGTA 58.955 55.000 0.00 0.00 41.97 2.29
3082 3140 2.922740 AAACTTCACCGGTAGAAGCA 57.077 45.000 30.34 10.15 44.87 3.91
3083 3141 2.922740 AACTTCACCGGTAGAAGCAA 57.077 45.000 30.34 10.69 44.87 3.91
3084 3142 2.922740 ACTTCACCGGTAGAAGCAAA 57.077 45.000 30.34 10.48 44.87 3.68
3085 3143 3.202829 ACTTCACCGGTAGAAGCAAAA 57.797 42.857 30.34 9.08 44.87 2.44
3086 3144 3.751518 ACTTCACCGGTAGAAGCAAAAT 58.248 40.909 30.34 17.35 44.87 1.82
3087 3145 4.142038 ACTTCACCGGTAGAAGCAAAATT 58.858 39.130 30.34 16.86 44.87 1.82
3088 3146 4.215613 ACTTCACCGGTAGAAGCAAAATTC 59.784 41.667 30.34 0.00 44.87 2.17
3089 3147 4.015872 TCACCGGTAGAAGCAAAATTCT 57.984 40.909 6.87 0.00 42.20 2.40
3090 3148 5.155278 TCACCGGTAGAAGCAAAATTCTA 57.845 39.130 6.87 0.00 40.08 2.10
3102 3160 9.167311 AGAAGCAAAATTCTACTATGGTTGTAG 57.833 33.333 0.00 0.00 37.76 2.74
3103 3161 7.321745 AGCAAAATTCTACTATGGTTGTAGC 57.678 36.000 0.00 0.00 37.78 3.58
3104 3162 6.884295 AGCAAAATTCTACTATGGTTGTAGCA 59.116 34.615 0.00 0.00 37.78 3.49
3105 3163 7.393234 AGCAAAATTCTACTATGGTTGTAGCAA 59.607 33.333 0.00 0.00 37.78 3.91
3106 3164 8.026607 GCAAAATTCTACTATGGTTGTAGCAAA 58.973 33.333 0.00 0.00 37.78 3.68
3107 3165 9.906660 CAAAATTCTACTATGGTTGTAGCAAAA 57.093 29.630 0.00 0.00 37.78 2.44
3111 3169 8.856153 TTCTACTATGGTTGTAGCAAAAATCA 57.144 30.769 0.00 0.00 37.78 2.57
3112 3170 8.856153 TCTACTATGGTTGTAGCAAAAATCAA 57.144 30.769 0.00 0.00 37.78 2.57
3113 3171 9.290988 TCTACTATGGTTGTAGCAAAAATCAAA 57.709 29.630 0.00 0.00 37.78 2.69
3114 3172 9.341899 CTACTATGGTTGTAGCAAAAATCAAAC 57.658 33.333 0.00 0.00 32.29 2.93
3115 3173 7.721402 ACTATGGTTGTAGCAAAAATCAAACA 58.279 30.769 0.00 0.00 40.81 2.83
3116 3174 6.843069 ATGGTTGTAGCAAAAATCAAACAC 57.157 33.333 0.00 0.00 39.68 3.32
3117 3175 5.971763 TGGTTGTAGCAAAAATCAAACACT 58.028 33.333 0.00 0.00 33.47 3.55
3118 3176 5.809562 TGGTTGTAGCAAAAATCAAACACTG 59.190 36.000 0.00 0.00 33.47 3.66
3119 3177 5.810074 GGTTGTAGCAAAAATCAAACACTGT 59.190 36.000 0.00 0.00 0.00 3.55
3120 3178 6.019881 GGTTGTAGCAAAAATCAAACACTGTC 60.020 38.462 0.00 0.00 0.00 3.51
3121 3179 5.270083 TGTAGCAAAAATCAAACACTGTCG 58.730 37.500 0.00 0.00 0.00 4.35
3122 3180 3.115554 AGCAAAAATCAAACACTGTCGC 58.884 40.909 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.243359 TCCATTTTCTGGTGCCTCTTT 57.757 42.857 0.00 0.00 46.08 2.52
37 38 7.472334 AAAAATCAGCTCATAAACAGTCCAT 57.528 32.000 0.00 0.00 0.00 3.41
82 88 0.466189 AGAACCACAGTGCCCACTTG 60.466 55.000 0.00 1.76 40.20 3.16
83 89 0.466189 CAGAACCACAGTGCCCACTT 60.466 55.000 0.00 0.00 40.20 3.16
90 96 0.391661 CCGGATCCAGAACCACAGTG 60.392 60.000 13.41 0.00 0.00 3.66
105 111 1.497309 AAAGGCCACAATCTCCCGGA 61.497 55.000 5.01 0.00 0.00 5.14
106 112 1.000896 AAAGGCCACAATCTCCCGG 60.001 57.895 5.01 0.00 0.00 5.73
107 113 1.315257 CCAAAGGCCACAATCTCCCG 61.315 60.000 5.01 0.00 0.00 5.14
108 114 0.972471 CCCAAAGGCCACAATCTCCC 60.972 60.000 5.01 0.00 0.00 4.30
154 162 0.908198 AGGTTCTGGATCAGTGGAGC 59.092 55.000 0.00 0.00 32.61 4.70
191 199 0.882042 CAATCGGGCCGAATCAGAGG 60.882 60.000 34.58 8.42 39.99 3.69
286 295 2.701780 GCAGGAGAAGACGCGAGGA 61.702 63.158 15.93 0.00 0.00 3.71
386 401 1.519408 ACAAGACGGATTTCCAACGG 58.481 50.000 0.00 0.00 35.14 4.44
440 456 2.980568 ACGAACAAACAGGAACACTCA 58.019 42.857 0.00 0.00 0.00 3.41
506 524 0.725784 CGGCGCAACAACTAAGCAAG 60.726 55.000 10.83 0.00 0.00 4.01
514 532 1.084370 AGATCTAGCGGCGCAACAAC 61.084 55.000 35.02 20.67 0.00 3.32
581 599 0.255890 ATGGCCTGCCGTGTTTCTAT 59.744 50.000 3.32 0.00 39.42 1.98
597 615 7.305474 GGTAAACAAGAATCACACAGTAATGG 58.695 38.462 0.00 0.00 0.00 3.16
602 620 4.787551 TGGGTAAACAAGAATCACACAGT 58.212 39.130 0.00 0.00 0.00 3.55
606 624 5.042463 TCACTGGGTAAACAAGAATCACA 57.958 39.130 0.00 0.00 0.00 3.58
623 642 1.815003 GGGGTTTCTGCATCTTCACTG 59.185 52.381 0.00 0.00 0.00 3.66
642 661 3.372554 GAGCCTTCGAAGACCCGGG 62.373 68.421 26.61 22.25 34.32 5.73
679 698 8.583765 GCACGAAAAGAACAATAATAAACATCC 58.416 33.333 0.00 0.00 0.00 3.51
702 725 4.929315 CACGTAAATTGAAGTTGTGCAC 57.071 40.909 10.75 10.75 0.00 4.57
707 730 6.523201 GGAGTTATGCACGTAAATTGAAGTTG 59.477 38.462 0.00 0.00 0.00 3.16
712 735 6.372937 TGAATGGAGTTATGCACGTAAATTGA 59.627 34.615 0.00 0.00 0.00 2.57
713 736 6.550843 TGAATGGAGTTATGCACGTAAATTG 58.449 36.000 0.00 0.00 0.00 2.32
721 744 6.798482 TGAATGAATGAATGGAGTTATGCAC 58.202 36.000 0.00 0.00 0.00 4.57
746 769 3.571828 TCAGAGATGAACATCGGAGGATC 59.428 47.826 8.79 0.00 42.48 3.36
823 850 3.465871 GTTCAAGGCCAAATGAAAGCAA 58.534 40.909 17.08 0.00 37.31 3.91
831 858 4.668138 TTACTAGGGTTCAAGGCCAAAT 57.332 40.909 5.01 0.00 0.00 2.32
867 894 5.669122 CAAGACGCATGGAAAATCAAAAAC 58.331 37.500 0.00 0.00 0.00 2.43
884 912 3.243877 CCAAATAGATCGACAGCAAGACG 59.756 47.826 0.00 0.00 36.74 4.18
928 964 4.633565 GCATGGAAGGCTAAGTATATGCTC 59.366 45.833 0.00 0.00 42.67 4.26
945 981 6.207810 ACAGAATTAAAGTTAAACGGCATGGA 59.792 34.615 0.00 0.00 0.00 3.41
961 997 6.872920 AGCACCTGAAAACAAACAGAATTAA 58.127 32.000 0.00 0.00 36.38 1.40
1014 1050 1.146152 AGATAGGCGAGAAGGTAGGCT 59.854 52.381 0.00 0.00 43.35 4.58
1080 1116 6.486657 CCAACAAAGAAGAATTACCTGAGTCA 59.513 38.462 0.00 0.00 0.00 3.41
1134 1170 3.643792 AGCTAGAGGCATTACCCAAGTAG 59.356 47.826 0.00 0.00 44.79 2.57
1143 1179 4.287067 CCATAAGGGAAGCTAGAGGCATTA 59.713 45.833 0.00 0.00 40.94 1.90
1158 1201 6.126409 TGCTAAATAGGTCAAACCATAAGGG 58.874 40.000 0.00 0.00 41.95 3.95
1159 1202 7.255590 CCATGCTAAATAGGTCAAACCATAAGG 60.256 40.741 0.00 0.00 41.95 2.69
1217 1260 9.185192 GGATTTATGTTATATTCAGCAAACAGC 57.815 33.333 0.00 0.00 46.19 4.40
1257 1304 5.860941 ATAGTACTCAATGACCTGACTGG 57.139 43.478 0.00 0.00 42.93 4.00
1318 1365 8.614469 TTTGATATGCGACCATAATCATAACA 57.386 30.769 0.00 0.00 37.47 2.41
1447 1494 5.830912 TGTAACAAGCAATTTCCAAGTCAG 58.169 37.500 0.00 0.00 0.00 3.51
1660 1707 3.863086 TCTCTTCAACCTTCTCCTCCTT 58.137 45.455 0.00 0.00 0.00 3.36
1664 1711 3.863086 TCCTTCTCTTCAACCTTCTCCT 58.137 45.455 0.00 0.00 0.00 3.69
1665 1712 4.284746 TCTTCCTTCTCTTCAACCTTCTCC 59.715 45.833 0.00 0.00 0.00 3.71
1666 1713 5.476091 TCTTCCTTCTCTTCAACCTTCTC 57.524 43.478 0.00 0.00 0.00 2.87
1734 1781 5.063880 ACTTAAGGCCACAGAACTAAAGTG 58.936 41.667 5.01 0.00 0.00 3.16
1779 1827 1.885887 TGAATGTGGGTTGCTTGCTAC 59.114 47.619 0.00 0.00 0.00 3.58
1836 1884 4.367450 GCACTTGTCATGCCAAAACTAAA 58.633 39.130 0.00 0.00 37.08 1.85
1849 1897 5.049167 GTGAATTTGAAATGGCACTTGTCA 58.951 37.500 13.57 0.00 0.00 3.58
1855 1903 2.738314 GGCAGTGAATTTGAAATGGCAC 59.262 45.455 13.18 13.18 33.80 5.01
1938 1987 1.755380 CTAATTCCGAACGGAGGGAGT 59.245 52.381 15.34 4.12 46.06 3.85
1939 1988 1.755380 ACTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 14.71 46.06 4.30
1940 1989 1.856629 ACTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1941 1990 2.277084 CAACTAATTCCGAACGGAGGG 58.723 52.381 15.34 9.70 46.06 4.30
1942 1991 2.928116 GACAACTAATTCCGAACGGAGG 59.072 50.000 15.34 10.00 46.06 4.30
1943 1992 3.846360 AGACAACTAATTCCGAACGGAG 58.154 45.455 15.34 7.27 46.06 4.63
1944 1993 3.671433 CGAGACAACTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1945 1994 2.597305 CGAGACAACTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1946 1995 3.495193 TCGAGACAACTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
1947 1996 5.834239 TTTCGAGACAACTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
1948 1997 6.128391 CCATTTTCGAGACAACTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
1949 1998 5.350365 CCATTTTCGAGACAACTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
1950 1999 5.350365 TCCATTTTCGAGACAACTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
1951 2000 6.737254 TCCATTTTCGAGACAACTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
1952 2001 7.752695 ACATCCATTTTCGAGACAACTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
1953 2002 7.687941 ACATCCATTTTCGAGACAACTAATT 57.312 32.000 0.00 0.00 0.00 1.40
1954 2003 8.964476 ATACATCCATTTTCGAGACAACTAAT 57.036 30.769 0.00 0.00 0.00 1.73
1955 2004 8.258007 AGATACATCCATTTTCGAGACAACTAA 58.742 33.333 0.00 0.00 0.00 2.24
1956 2005 7.782049 AGATACATCCATTTTCGAGACAACTA 58.218 34.615 0.00 0.00 0.00 2.24
1957 2006 6.644347 AGATACATCCATTTTCGAGACAACT 58.356 36.000 0.00 0.00 0.00 3.16
1958 2007 6.910536 AGATACATCCATTTTCGAGACAAC 57.089 37.500 0.00 0.00 0.00 3.32
1959 2008 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
1960 2009 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
1961 2010 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
1962 2011 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
1963 2012 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
1989 2038 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
1990 2039 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
1991 2040 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
1992 2041 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
1993 2042 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
1994 2043 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
1995 2044 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
1996 2045 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
1997 2046 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
1998 2047 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
1999 2048 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2000 2049 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2001 2050 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2002 2051 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2003 2052 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2004 2053 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2005 2054 5.882557 AGAATTACTTGTCGCAGAAATGGAT 59.117 36.000 0.00 0.00 39.69 3.41
2006 2055 5.122239 CAGAATTACTTGTCGCAGAAATGGA 59.878 40.000 0.00 0.00 39.69 3.41
2007 2056 5.122239 TCAGAATTACTTGTCGCAGAAATGG 59.878 40.000 0.00 0.00 39.69 3.16
2008 2057 6.169419 TCAGAATTACTTGTCGCAGAAATG 57.831 37.500 0.00 0.00 39.69 2.32
2009 2058 6.204688 TGTTCAGAATTACTTGTCGCAGAAAT 59.795 34.615 0.00 0.00 39.69 2.17
2010 2059 5.525745 TGTTCAGAATTACTTGTCGCAGAAA 59.474 36.000 0.00 0.00 39.69 2.52
2011 2060 5.053811 TGTTCAGAATTACTTGTCGCAGAA 58.946 37.500 0.00 0.00 39.69 3.02
2012 2061 4.627058 TGTTCAGAATTACTTGTCGCAGA 58.373 39.130 0.00 0.00 0.00 4.26
2013 2062 4.686091 TCTGTTCAGAATTACTTGTCGCAG 59.314 41.667 0.00 0.00 0.00 5.18
2014 2063 4.627058 TCTGTTCAGAATTACTTGTCGCA 58.373 39.130 0.00 0.00 0.00 5.10
2015 2064 4.092091 CCTCTGTTCAGAATTACTTGTCGC 59.908 45.833 4.09 0.00 0.00 5.19
2016 2065 4.627467 CCCTCTGTTCAGAATTACTTGTCG 59.373 45.833 4.09 0.00 0.00 4.35
2017 2066 5.794894 TCCCTCTGTTCAGAATTACTTGTC 58.205 41.667 4.09 0.00 0.00 3.18
2018 2067 5.308237 ACTCCCTCTGTTCAGAATTACTTGT 59.692 40.000 4.09 0.00 0.00 3.16
2019 2068 5.799213 ACTCCCTCTGTTCAGAATTACTTG 58.201 41.667 4.09 0.00 0.00 3.16
2020 2069 6.726764 AGTACTCCCTCTGTTCAGAATTACTT 59.273 38.462 4.09 0.00 0.00 2.24
2021 2070 6.257586 AGTACTCCCTCTGTTCAGAATTACT 58.742 40.000 4.09 1.91 0.00 2.24
2022 2071 6.532988 AGTACTCCCTCTGTTCAGAATTAC 57.467 41.667 4.09 0.00 0.00 1.89
2023 2072 6.497259 ACAAGTACTCCCTCTGTTCAGAATTA 59.503 38.462 0.00 0.00 0.00 1.40
2024 2073 5.308237 ACAAGTACTCCCTCTGTTCAGAATT 59.692 40.000 0.00 0.00 0.00 2.17
2025 2074 4.841246 ACAAGTACTCCCTCTGTTCAGAAT 59.159 41.667 0.00 0.00 0.00 2.40
2026 2075 4.223953 ACAAGTACTCCCTCTGTTCAGAA 58.776 43.478 0.00 0.00 0.00 3.02
2027 2076 3.845860 ACAAGTACTCCCTCTGTTCAGA 58.154 45.455 0.00 2.49 0.00 3.27
2028 2077 5.186021 ACATACAAGTACTCCCTCTGTTCAG 59.814 44.000 0.00 0.00 0.00 3.02
2029 2078 5.047306 CACATACAAGTACTCCCTCTGTTCA 60.047 44.000 0.00 0.00 0.00 3.18
2030 2079 5.185249 TCACATACAAGTACTCCCTCTGTTC 59.815 44.000 0.00 0.00 0.00 3.18
2031 2080 5.084519 TCACATACAAGTACTCCCTCTGTT 58.915 41.667 0.00 0.00 0.00 3.16
2032 2081 4.673968 TCACATACAAGTACTCCCTCTGT 58.326 43.478 0.00 0.00 0.00 3.41
2033 2082 5.661056 TTCACATACAAGTACTCCCTCTG 57.339 43.478 0.00 0.00 0.00 3.35
2034 2083 6.875972 AATTCACATACAAGTACTCCCTCT 57.124 37.500 0.00 0.00 0.00 3.69
2035 2084 9.046296 CAATAATTCACATACAAGTACTCCCTC 57.954 37.037 0.00 0.00 0.00 4.30
2036 2085 8.548877 ACAATAATTCACATACAAGTACTCCCT 58.451 33.333 0.00 0.00 0.00 4.20
2037 2086 8.612619 CACAATAATTCACATACAAGTACTCCC 58.387 37.037 0.00 0.00 0.00 4.30
2038 2087 9.378551 TCACAATAATTCACATACAAGTACTCC 57.621 33.333 0.00 0.00 0.00 3.85
2059 2108 3.248363 CGAGAATGTCAGCAAGTTCACAA 59.752 43.478 0.00 0.00 0.00 3.33
2201 2250 5.009210 GCACGAACTTCAGGTCTCTAGATAT 59.991 44.000 0.00 0.00 0.00 1.63
2202 2251 4.335874 GCACGAACTTCAGGTCTCTAGATA 59.664 45.833 0.00 0.00 0.00 1.98
2215 2266 3.914364 CCAAGCAAAATAGCACGAACTTC 59.086 43.478 0.00 0.00 36.85 3.01
2298 2349 9.859427 ACATAACACCAATTTATCAATCAACTG 57.141 29.630 0.00 0.00 0.00 3.16
2312 2363 6.318648 ACATATGCGAGAAACATAACACCAAT 59.681 34.615 1.58 0.00 33.89 3.16
2316 2367 6.589830 AGACATATGCGAGAAACATAACAC 57.410 37.500 1.58 0.00 33.89 3.32
2319 2370 7.495606 ACATCAAGACATATGCGAGAAACATAA 59.504 33.333 1.58 0.00 33.89 1.90
2321 2372 5.819379 ACATCAAGACATATGCGAGAAACAT 59.181 36.000 1.58 0.00 0.00 2.71
2323 2374 5.725110 ACATCAAGACATATGCGAGAAAC 57.275 39.130 1.58 0.00 0.00 2.78
2324 2375 6.149308 ACAAACATCAAGACATATGCGAGAAA 59.851 34.615 1.58 0.00 0.00 2.52
2326 2377 5.063817 CACAAACATCAAGACATATGCGAGA 59.936 40.000 1.58 0.00 0.00 4.04
2327 2378 5.260900 CACAAACATCAAGACATATGCGAG 58.739 41.667 1.58 0.00 0.00 5.03
2330 2382 5.314923 ACCACAAACATCAAGACATATGC 57.685 39.130 1.58 0.00 0.00 3.14
2332 2384 5.487433 TCGACCACAAACATCAAGACATAT 58.513 37.500 0.00 0.00 0.00 1.78
2333 2385 4.888917 TCGACCACAAACATCAAGACATA 58.111 39.130 0.00 0.00 0.00 2.29
2355 2411 6.335471 TCAAAAGATCATGTGCACTTTCAT 57.665 33.333 19.41 6.04 32.52 2.57
2359 2415 5.717078 ACATCAAAAGATCATGTGCACTT 57.283 34.783 19.41 9.21 29.36 3.16
2371 2427 9.300681 AGATAAACCATTCAGAACATCAAAAGA 57.699 29.630 0.00 0.00 0.00 2.52
2385 2441 6.830838 AGATCCTTTCACCAGATAAACCATTC 59.169 38.462 0.00 0.00 0.00 2.67
2422 2478 3.503748 CCAGAGAAAACCCATTCAGTCAC 59.496 47.826 0.00 0.00 0.00 3.67
2426 2482 3.439857 TCCCAGAGAAAACCCATTCAG 57.560 47.619 0.00 0.00 0.00 3.02
2473 2529 8.321353 TCTCACTGTGAAAAATGGTCATATAGT 58.679 33.333 12.16 0.00 0.00 2.12
2474 2530 8.722480 TCTCACTGTGAAAAATGGTCATATAG 57.278 34.615 12.16 0.00 0.00 1.31
2475 2531 9.330063 GATCTCACTGTGAAAAATGGTCATATA 57.670 33.333 12.16 0.00 0.00 0.86
2476 2532 8.051535 AGATCTCACTGTGAAAAATGGTCATAT 58.948 33.333 12.16 0.00 0.00 1.78
2477 2533 7.397221 AGATCTCACTGTGAAAAATGGTCATA 58.603 34.615 12.16 0.00 0.00 2.15
2510 2568 5.971763 TCTCCTTTATCTGTTCAGAGAAGC 58.028 41.667 16.35 0.00 0.00 3.86
2524 2582 6.189859 TGTTTGCATCTCCATTCTCCTTTAT 58.810 36.000 0.00 0.00 0.00 1.40
2525 2583 5.569355 TGTTTGCATCTCCATTCTCCTTTA 58.431 37.500 0.00 0.00 0.00 1.85
2541 2599 9.941325 ACCAATTTATTCAAATCTATGTTTGCA 57.059 25.926 0.00 0.00 38.61 4.08
2552 2610 9.625747 AAAAAGTGTCCACCAATTTATTCAAAT 57.374 25.926 0.00 0.00 40.24 2.32
2558 2616 7.118496 TGTCAAAAAGTGTCCACCAATTTAT 57.882 32.000 0.00 0.00 40.24 1.40
2606 2664 7.720957 CCCAGTTGTATGAAGATCCAATGAATA 59.279 37.037 0.00 0.00 0.00 1.75
2607 2665 6.548622 CCCAGTTGTATGAAGATCCAATGAAT 59.451 38.462 0.00 0.00 0.00 2.57
2625 2683 2.496899 AGCTCACAATACCCCAGTTG 57.503 50.000 0.00 0.00 0.00 3.16
2650 2708 0.250467 TGCTGTTTCTGGTGCCTCTC 60.250 55.000 0.00 0.00 0.00 3.20
2658 2716 1.808945 GGTGATGTCTGCTGTTTCTGG 59.191 52.381 0.00 0.00 0.00 3.86
2677 2735 2.606725 CTCTTTGCTCAAGTATCGCAGG 59.393 50.000 0.00 0.00 34.82 4.85
2689 2747 0.107459 ATCGCCCTTCCTCTTTGCTC 60.107 55.000 0.00 0.00 0.00 4.26
2692 2750 0.393537 AGCATCGCCCTTCCTCTTTG 60.394 55.000 0.00 0.00 0.00 2.77
2720 2778 2.677573 AAAACTTTCAGCCGGTGCGC 62.678 55.000 1.90 0.00 44.33 6.09
2721 2779 0.934436 CAAAACTTTCAGCCGGTGCG 60.934 55.000 1.90 0.00 44.33 5.34
2722 2780 0.597377 CCAAAACTTTCAGCCGGTGC 60.597 55.000 1.90 0.00 37.95 5.01
2723 2781 0.597377 GCCAAAACTTTCAGCCGGTG 60.597 55.000 1.90 0.00 0.00 4.94
2724 2782 1.739667 GCCAAAACTTTCAGCCGGT 59.260 52.632 1.90 0.00 0.00 5.28
2725 2783 1.006220 GGCCAAAACTTTCAGCCGG 60.006 57.895 0.00 0.00 33.18 6.13
2726 2784 4.653555 GGCCAAAACTTTCAGCCG 57.346 55.556 0.00 0.00 33.18 5.52
2727 2785 1.006220 CCGGCCAAAACTTTCAGCC 60.006 57.895 2.24 5.14 40.33 4.85
2728 2786 0.318699 GACCGGCCAAAACTTTCAGC 60.319 55.000 0.00 0.00 0.00 4.26
2729 2787 0.313987 GGACCGGCCAAAACTTTCAG 59.686 55.000 0.00 0.00 36.34 3.02
2730 2788 0.106419 AGGACCGGCCAAAACTTTCA 60.106 50.000 15.92 0.00 40.02 2.69
2731 2789 0.313987 CAGGACCGGCCAAAACTTTC 59.686 55.000 15.92 0.00 40.02 2.62
2732 2790 1.744320 GCAGGACCGGCCAAAACTTT 61.744 55.000 15.92 0.00 40.02 2.66
2733 2791 2.200337 GCAGGACCGGCCAAAACTT 61.200 57.895 15.92 0.00 40.02 2.66
2734 2792 2.597510 GCAGGACCGGCCAAAACT 60.598 61.111 15.92 0.00 40.02 2.66
2745 2803 4.748144 CAAGGGCTGGGGCAGGAC 62.748 72.222 0.00 0.00 40.87 3.85
2748 2806 3.528217 TTTCCAAGGGCTGGGGCAG 62.528 63.158 0.00 0.00 46.44 4.85
2749 2807 2.611964 TTTTTCCAAGGGCTGGGGCA 62.612 55.000 0.00 0.00 46.44 5.36
2750 2808 1.200760 ATTTTTCCAAGGGCTGGGGC 61.201 55.000 0.00 0.00 46.44 5.80
2751 2809 0.614812 CATTTTTCCAAGGGCTGGGG 59.385 55.000 0.00 0.00 46.44 4.96
2752 2810 1.643310 TCATTTTTCCAAGGGCTGGG 58.357 50.000 0.00 0.00 46.44 4.45
2754 2812 4.644498 ACAAATCATTTTTCCAAGGGCTG 58.356 39.130 0.00 0.00 0.00 4.85
2755 2813 4.263025 GGACAAATCATTTTTCCAAGGGCT 60.263 41.667 10.05 0.00 0.00 5.19
2756 2814 4.002982 GGACAAATCATTTTTCCAAGGGC 58.997 43.478 10.05 0.00 0.00 5.19
2757 2815 5.240121 CAGGACAAATCATTTTTCCAAGGG 58.760 41.667 16.19 1.28 30.63 3.95
2758 2816 5.011943 TCCAGGACAAATCATTTTTCCAAGG 59.988 40.000 16.19 15.92 30.63 3.61
2759 2817 6.100404 TCCAGGACAAATCATTTTTCCAAG 57.900 37.500 16.19 8.82 30.63 3.61
2760 2818 6.465948 CATCCAGGACAAATCATTTTTCCAA 58.534 36.000 16.19 3.50 30.63 3.53
2761 2819 5.569227 GCATCCAGGACAAATCATTTTTCCA 60.569 40.000 16.19 0.00 30.63 3.53
2762 2820 4.872124 GCATCCAGGACAAATCATTTTTCC 59.128 41.667 7.17 7.17 0.00 3.13
2763 2821 4.563976 CGCATCCAGGACAAATCATTTTTC 59.436 41.667 0.00 0.00 0.00 2.29
2764 2822 4.497300 CGCATCCAGGACAAATCATTTTT 58.503 39.130 0.00 0.00 0.00 1.94
2765 2823 3.119029 CCGCATCCAGGACAAATCATTTT 60.119 43.478 0.00 0.00 0.00 1.82
2766 2824 2.428171 CCGCATCCAGGACAAATCATTT 59.572 45.455 0.00 0.00 0.00 2.32
2767 2825 2.026641 CCGCATCCAGGACAAATCATT 58.973 47.619 0.00 0.00 0.00 2.57
2768 2826 1.212688 TCCGCATCCAGGACAAATCAT 59.787 47.619 0.00 0.00 31.86 2.45
2769 2827 0.617935 TCCGCATCCAGGACAAATCA 59.382 50.000 0.00 0.00 31.86 2.57
2770 2828 1.750193 TTCCGCATCCAGGACAAATC 58.250 50.000 0.00 0.00 37.53 2.17
2771 2829 2.214376 TTTCCGCATCCAGGACAAAT 57.786 45.000 0.00 0.00 37.53 2.32
2772 2830 1.988293 TTTTCCGCATCCAGGACAAA 58.012 45.000 0.00 0.00 37.53 2.83
2773 2831 1.988293 TTTTTCCGCATCCAGGACAA 58.012 45.000 0.00 0.00 37.53 3.18
2774 2832 3.735704 TTTTTCCGCATCCAGGACA 57.264 47.368 0.00 0.00 37.53 4.02
2789 2847 3.305398 TGTCAACGTTGGCAACTTTTT 57.695 38.095 31.78 14.35 40.28 1.94
2790 2848 3.518634 ATGTCAACGTTGGCAACTTTT 57.481 38.095 36.19 19.02 46.95 2.27
2791 2849 4.640789 TTATGTCAACGTTGGCAACTTT 57.359 36.364 36.19 23.26 46.95 2.66
2792 2850 4.640789 TTTATGTCAACGTTGGCAACTT 57.359 36.364 36.19 23.61 46.95 2.66
2793 2851 4.640789 TTTTATGTCAACGTTGGCAACT 57.359 36.364 36.19 24.31 46.95 3.16
2794 2852 4.801516 ACTTTTTATGTCAACGTTGGCAAC 59.198 37.500 36.19 22.87 46.95 4.17
2795 2853 5.000012 ACTTTTTATGTCAACGTTGGCAA 58.000 34.783 36.19 22.89 46.95 4.52
2797 2855 5.517054 TGAAACTTTTTATGTCAACGTTGGC 59.483 36.000 25.54 25.54 0.00 4.52
2798 2856 7.387945 GTTGAAACTTTTTATGTCAACGTTGG 58.612 34.615 27.02 10.71 38.87 3.77
2799 2857 7.387945 GGTTGAAACTTTTTATGTCAACGTTG 58.612 34.615 22.35 22.35 45.76 4.10
2800 2858 6.251801 CGGTTGAAACTTTTTATGTCAACGTT 59.748 34.615 0.00 0.00 45.76 3.99
2801 2859 5.740099 CGGTTGAAACTTTTTATGTCAACGT 59.260 36.000 8.31 0.00 45.76 3.99
2802 2860 5.740099 ACGGTTGAAACTTTTTATGTCAACG 59.260 36.000 8.31 6.85 45.76 4.10
2803 2861 8.791355 ATACGGTTGAAACTTTTTATGTCAAC 57.209 30.769 6.34 6.34 44.66 3.18
2812 2870 9.893305 CTTTTCTCATATACGGTTGAAACTTTT 57.107 29.630 0.00 0.00 0.00 2.27
2813 2871 8.021396 GCTTTTCTCATATACGGTTGAAACTTT 58.979 33.333 0.00 0.00 0.00 2.66
2814 2872 7.390718 AGCTTTTCTCATATACGGTTGAAACTT 59.609 33.333 0.00 0.00 0.00 2.66
2815 2873 6.879458 AGCTTTTCTCATATACGGTTGAAACT 59.121 34.615 0.00 0.00 0.00 2.66
2816 2874 7.073342 AGCTTTTCTCATATACGGTTGAAAC 57.927 36.000 0.00 0.00 0.00 2.78
2817 2875 7.389330 TGAAGCTTTTCTCATATACGGTTGAAA 59.611 33.333 0.00 0.00 0.00 2.69
2818 2876 6.876789 TGAAGCTTTTCTCATATACGGTTGAA 59.123 34.615 0.00 0.00 0.00 2.69
2819 2877 6.403049 TGAAGCTTTTCTCATATACGGTTGA 58.597 36.000 0.00 0.00 0.00 3.18
2820 2878 6.662414 TGAAGCTTTTCTCATATACGGTTG 57.338 37.500 0.00 0.00 0.00 3.77
2821 2879 7.527457 GTTTGAAGCTTTTCTCATATACGGTT 58.473 34.615 0.00 0.00 0.00 4.44
2822 2880 6.183360 CGTTTGAAGCTTTTCTCATATACGGT 60.183 38.462 0.00 0.00 0.00 4.83
2823 2881 6.185399 CGTTTGAAGCTTTTCTCATATACGG 58.815 40.000 0.00 0.00 0.00 4.02
2824 2882 6.185399 CCGTTTGAAGCTTTTCTCATATACG 58.815 40.000 0.00 4.95 0.00 3.06
2825 2883 5.965918 GCCGTTTGAAGCTTTTCTCATATAC 59.034 40.000 0.00 0.00 0.00 1.47
2826 2884 5.880332 AGCCGTTTGAAGCTTTTCTCATATA 59.120 36.000 0.00 0.00 35.22 0.86
2827 2885 4.702131 AGCCGTTTGAAGCTTTTCTCATAT 59.298 37.500 0.00 0.00 35.22 1.78
2828 2886 4.072131 AGCCGTTTGAAGCTTTTCTCATA 58.928 39.130 0.00 0.00 35.22 2.15
2829 2887 2.887152 AGCCGTTTGAAGCTTTTCTCAT 59.113 40.909 0.00 0.00 35.22 2.90
2830 2888 2.297701 AGCCGTTTGAAGCTTTTCTCA 58.702 42.857 0.00 0.00 35.22 3.27
2831 2889 4.154195 TGATAGCCGTTTGAAGCTTTTCTC 59.846 41.667 0.00 0.00 40.56 2.87
2832 2890 4.072131 TGATAGCCGTTTGAAGCTTTTCT 58.928 39.130 0.00 0.00 40.56 2.52
2833 2891 4.406943 CTGATAGCCGTTTGAAGCTTTTC 58.593 43.478 0.00 0.00 40.56 2.29
2834 2892 3.366374 GCTGATAGCCGTTTGAAGCTTTT 60.366 43.478 0.00 0.00 40.56 2.27
2835 2893 2.162408 GCTGATAGCCGTTTGAAGCTTT 59.838 45.455 0.00 0.00 40.56 3.51
2836 2894 1.740025 GCTGATAGCCGTTTGAAGCTT 59.260 47.619 0.00 0.00 40.56 3.74
2837 2895 1.373570 GCTGATAGCCGTTTGAAGCT 58.626 50.000 0.00 0.00 43.20 3.74
2838 2896 0.026803 CGCTGATAGCCGTTTGAAGC 59.973 55.000 0.00 0.00 38.18 3.86
2839 2897 1.324736 GTCGCTGATAGCCGTTTGAAG 59.675 52.381 0.00 0.00 38.18 3.02
2840 2898 1.337354 TGTCGCTGATAGCCGTTTGAA 60.337 47.619 0.00 0.00 38.18 2.69
2841 2899 0.245266 TGTCGCTGATAGCCGTTTGA 59.755 50.000 0.00 0.00 38.18 2.69
2842 2900 1.075542 TTGTCGCTGATAGCCGTTTG 58.924 50.000 0.00 0.00 38.18 2.93
2843 2901 1.803334 TTTGTCGCTGATAGCCGTTT 58.197 45.000 0.00 0.00 38.18 3.60
2844 2902 1.803334 TTTTGTCGCTGATAGCCGTT 58.197 45.000 0.00 0.00 38.18 4.44
2845 2903 1.803334 TTTTTGTCGCTGATAGCCGT 58.197 45.000 0.00 0.00 38.18 5.68
2861 2919 3.258228 CGGACTGCAACCAAAACTTTTT 58.742 40.909 9.72 0.00 0.00 1.94
2862 2920 2.887337 CGGACTGCAACCAAAACTTTT 58.113 42.857 9.72 0.00 0.00 2.27
2863 2921 1.470805 GCGGACTGCAACCAAAACTTT 60.471 47.619 0.00 0.00 45.45 2.66
2864 2922 0.102300 GCGGACTGCAACCAAAACTT 59.898 50.000 0.00 0.00 45.45 2.66
2865 2923 1.733526 GCGGACTGCAACCAAAACT 59.266 52.632 0.00 0.00 45.45 2.66
2866 2924 1.657181 CGCGGACTGCAACCAAAAC 60.657 57.895 7.13 0.00 46.97 2.43
2867 2925 2.718731 CGCGGACTGCAACCAAAA 59.281 55.556 7.13 0.00 46.97 2.44
2868 2926 3.959975 GCGCGGACTGCAACCAAA 61.960 61.111 8.83 0.00 46.97 3.28
2884 2942 4.980805 TGACCAAGGTGACCGCGC 62.981 66.667 0.00 0.00 0.00 6.86
2885 2943 2.047274 ATGACCAAGGTGACCGCG 60.047 61.111 0.00 0.00 0.00 6.46
2886 2944 2.100631 CGATGACCAAGGTGACCGC 61.101 63.158 0.00 0.00 0.00 5.68
2887 2945 0.736325 GACGATGACCAAGGTGACCG 60.736 60.000 0.00 0.00 0.00 4.79
2888 2946 0.736325 CGACGATGACCAAGGTGACC 60.736 60.000 0.00 0.00 0.00 4.02
2889 2947 0.038526 ACGACGATGACCAAGGTGAC 60.039 55.000 0.00 0.00 0.00 3.67
2890 2948 0.242825 GACGACGATGACCAAGGTGA 59.757 55.000 0.00 0.00 0.00 4.02
2891 2949 1.071019 CGACGACGATGACCAAGGTG 61.071 60.000 0.00 0.00 42.66 4.00
2892 2950 1.211969 CGACGACGATGACCAAGGT 59.788 57.895 0.00 0.00 42.66 3.50
2893 2951 2.158959 GCGACGACGATGACCAAGG 61.159 63.158 12.29 0.00 42.66 3.61
2894 2952 2.497092 CGCGACGACGATGACCAAG 61.497 63.158 12.29 0.00 42.66 3.61
2895 2953 2.503158 CGCGACGACGATGACCAA 60.503 61.111 12.29 0.00 42.66 3.67
2898 2956 3.887327 GTGCGCGACGACGATGAC 61.887 66.667 12.10 0.00 42.66 3.06
2919 2977 4.629523 TTCAACCCCGTGGCGGTC 62.630 66.667 6.82 0.00 46.80 4.79
2920 2978 4.636435 CTTCAACCCCGTGGCGGT 62.636 66.667 6.82 0.00 46.80 5.68
2923 2981 3.670377 GTGCTTCAACCCCGTGGC 61.670 66.667 0.00 0.00 33.59 5.01
2924 2982 1.603455 ATGTGCTTCAACCCCGTGG 60.603 57.895 0.00 0.00 37.80 4.94
2925 2983 1.580942 CATGTGCTTCAACCCCGTG 59.419 57.895 0.00 0.00 0.00 4.94
2926 2984 1.603455 CCATGTGCTTCAACCCCGT 60.603 57.895 0.00 0.00 0.00 5.28
2927 2985 1.303236 TCCATGTGCTTCAACCCCG 60.303 57.895 0.00 0.00 0.00 5.73
2928 2986 0.539438 TGTCCATGTGCTTCAACCCC 60.539 55.000 0.00 0.00 0.00 4.95
2929 2987 1.474077 GATGTCCATGTGCTTCAACCC 59.526 52.381 0.00 0.00 0.00 4.11
2930 2988 1.131126 CGATGTCCATGTGCTTCAACC 59.869 52.381 0.00 0.00 0.00 3.77
2931 2989 1.466360 GCGATGTCCATGTGCTTCAAC 60.466 52.381 0.00 0.00 0.00 3.18
2932 2990 0.804364 GCGATGTCCATGTGCTTCAA 59.196 50.000 0.00 0.00 0.00 2.69
2933 2991 1.026182 GGCGATGTCCATGTGCTTCA 61.026 55.000 0.00 0.00 0.00 3.02
2934 2992 1.718757 GGGCGATGTCCATGTGCTTC 61.719 60.000 0.00 0.00 0.00 3.86
2935 2993 1.750399 GGGCGATGTCCATGTGCTT 60.750 57.895 0.00 0.00 0.00 3.91
2936 2994 2.124570 GGGCGATGTCCATGTGCT 60.125 61.111 0.00 0.00 0.00 4.40
2937 2995 3.211963 GGGGCGATGTCCATGTGC 61.212 66.667 0.00 0.00 0.00 4.57
2938 2996 2.896854 CGGGGCGATGTCCATGTG 60.897 66.667 0.00 0.00 0.00 3.21
2939 2997 4.175337 CCGGGGCGATGTCCATGT 62.175 66.667 0.00 0.00 0.00 3.21
2961 3019 4.972733 ATGTGCTGCAACCCCGCA 62.973 61.111 2.77 0.00 40.32 5.69
2962 3020 4.424566 CATGTGCTGCAACCCCGC 62.425 66.667 2.77 0.00 0.00 6.13
2963 3021 3.751246 CCATGTGCTGCAACCCCG 61.751 66.667 2.77 0.00 0.00 5.73
2964 3022 2.283101 TCCATGTGCTGCAACCCC 60.283 61.111 2.77 0.00 0.00 4.95
2965 3023 1.252904 ATGTCCATGTGCTGCAACCC 61.253 55.000 2.77 0.00 0.00 4.11
2966 3024 0.171903 GATGTCCATGTGCTGCAACC 59.828 55.000 2.77 0.00 0.00 3.77
2967 3025 0.179181 CGATGTCCATGTGCTGCAAC 60.179 55.000 2.77 0.00 0.00 4.17
2968 3026 1.925415 GCGATGTCCATGTGCTGCAA 61.925 55.000 2.77 0.00 0.00 4.08
2969 3027 2.400962 GCGATGTCCATGTGCTGCA 61.401 57.895 0.00 0.00 0.00 4.41
2970 3028 2.406401 GCGATGTCCATGTGCTGC 59.594 61.111 0.00 0.00 0.00 5.25
2971 3029 2.816360 CGGCGATGTCCATGTGCTG 61.816 63.158 0.00 0.11 0.00 4.41
2972 3030 2.512286 CGGCGATGTCCATGTGCT 60.512 61.111 0.00 0.00 0.00 4.40
2973 3031 2.819595 ACGGCGATGTCCATGTGC 60.820 61.111 16.62 0.00 0.00 4.57
2974 3032 2.463620 CCACGGCGATGTCCATGTG 61.464 63.158 16.62 0.00 0.00 3.21
2975 3033 1.609635 TACCACGGCGATGTCCATGT 61.610 55.000 16.62 3.97 0.00 3.21
2976 3034 0.875908 CTACCACGGCGATGTCCATG 60.876 60.000 16.62 0.00 0.00 3.66
2977 3035 1.441729 CTACCACGGCGATGTCCAT 59.558 57.895 16.62 0.00 0.00 3.41
2978 3036 2.889617 CTACCACGGCGATGTCCA 59.110 61.111 16.62 0.00 0.00 4.02
2979 3037 2.585247 GCTACCACGGCGATGTCC 60.585 66.667 16.62 1.35 0.00 4.02
2980 3038 1.447140 TTGCTACCACGGCGATGTC 60.447 57.895 16.62 0.00 0.00 3.06
2981 3039 1.740296 GTTGCTACCACGGCGATGT 60.740 57.895 16.62 12.76 0.00 3.06
2982 3040 2.461110 GGTTGCTACCACGGCGATG 61.461 63.158 16.62 8.29 44.36 3.84
2983 3041 2.125269 GGTTGCTACCACGGCGAT 60.125 61.111 16.62 0.25 44.36 4.58
2984 3042 4.382320 GGGTTGCTACCACGGCGA 62.382 66.667 16.62 0.00 46.96 5.54
2986 3044 4.692475 ACGGGTTGCTACCACGGC 62.692 66.667 23.58 7.07 46.96 5.68
2987 3045 2.433664 GACGGGTTGCTACCACGG 60.434 66.667 23.58 14.00 46.96 4.94
2988 3046 2.807895 CGACGGGTTGCTACCACG 60.808 66.667 19.19 19.81 46.96 4.94
2989 3047 1.735559 GACGACGGGTTGCTACCAC 60.736 63.158 19.19 7.59 46.96 4.16
2990 3048 2.652530 GACGACGGGTTGCTACCA 59.347 61.111 19.19 0.00 46.96 3.25
2991 3049 2.125793 GGACGACGGGTTGCTACC 60.126 66.667 9.03 9.03 44.22 3.18
2992 3050 1.153881 GAGGACGACGGGTTGCTAC 60.154 63.158 0.00 0.00 0.00 3.58
2993 3051 2.693762 CGAGGACGACGGGTTGCTA 61.694 63.158 0.00 0.00 42.66 3.49
2994 3052 4.052229 CGAGGACGACGGGTTGCT 62.052 66.667 0.00 0.00 42.66 3.91
3001 3059 2.805353 CTGCAACCGAGGACGACG 60.805 66.667 0.00 0.00 42.66 5.12
3002 3060 3.112709 GCTGCAACCGAGGACGAC 61.113 66.667 0.00 0.00 42.66 4.34
3003 3061 2.835701 GATGCTGCAACCGAGGACGA 62.836 60.000 6.36 0.00 42.66 4.20
3004 3062 2.434884 ATGCTGCAACCGAGGACG 60.435 61.111 6.36 0.00 39.43 4.79
3005 3063 1.078848 AGATGCTGCAACCGAGGAC 60.079 57.895 6.36 0.00 0.00 3.85
3006 3064 1.219124 GAGATGCTGCAACCGAGGA 59.781 57.895 6.36 0.00 0.00 3.71
3007 3065 1.817099 GGAGATGCTGCAACCGAGG 60.817 63.158 6.36 0.00 0.00 4.63
3008 3066 1.817099 GGGAGATGCTGCAACCGAG 60.817 63.158 6.36 0.00 0.00 4.63
3009 3067 1.913951 ATGGGAGATGCTGCAACCGA 61.914 55.000 6.36 8.61 0.00 4.69
3010 3068 1.452651 ATGGGAGATGCTGCAACCG 60.453 57.895 6.36 0.00 0.00 4.44
3011 3069 1.389609 CCATGGGAGATGCTGCAACC 61.390 60.000 6.36 10.66 0.00 3.77
3012 3070 0.682209 ACCATGGGAGATGCTGCAAC 60.682 55.000 18.09 3.53 0.00 4.17
3013 3071 0.394762 GACCATGGGAGATGCTGCAA 60.395 55.000 18.09 0.00 0.00 4.08
3014 3072 1.225426 GACCATGGGAGATGCTGCA 59.775 57.895 18.09 4.13 0.00 4.41
3015 3073 1.099879 GTGACCATGGGAGATGCTGC 61.100 60.000 18.09 0.00 0.00 5.25
3016 3074 0.465097 GGTGACCATGGGAGATGCTG 60.465 60.000 18.09 0.00 0.00 4.41
3017 3075 1.918253 GGTGACCATGGGAGATGCT 59.082 57.895 18.09 0.00 0.00 3.79
3018 3076 4.567318 GGTGACCATGGGAGATGC 57.433 61.111 18.09 0.00 0.00 3.91
3037 3095 2.028125 ACATCCATGTAGGGCGACCG 62.028 60.000 0.00 0.00 45.05 4.79
3038 3096 1.045407 TACATCCATGTAGGGCGACC 58.955 55.000 0.00 0.00 46.49 4.79
3061 3119 3.547746 TGCTTCTACCGGTGAAGTTTTT 58.452 40.909 30.32 4.99 41.94 1.94
3062 3120 3.202829 TGCTTCTACCGGTGAAGTTTT 57.797 42.857 30.32 5.61 41.94 2.43
3063 3121 2.922740 TGCTTCTACCGGTGAAGTTT 57.077 45.000 30.32 6.25 41.94 2.66
3064 3122 2.922740 TTGCTTCTACCGGTGAAGTT 57.077 45.000 30.32 6.88 41.94 2.66
3065 3123 2.922740 TTTGCTTCTACCGGTGAAGT 57.077 45.000 30.32 7.52 41.94 3.01
3066 3124 4.455877 AGAATTTTGCTTCTACCGGTGAAG 59.544 41.667 28.15 28.15 42.58 3.02
3067 3125 4.394729 AGAATTTTGCTTCTACCGGTGAA 58.605 39.130 19.93 17.17 33.73 3.18
3068 3126 4.015872 AGAATTTTGCTTCTACCGGTGA 57.984 40.909 19.93 10.15 33.73 4.02
3069 3127 5.217895 GTAGAATTTTGCTTCTACCGGTG 57.782 43.478 19.93 7.59 46.23 4.94
3076 3134 9.167311 CTACAACCATAGTAGAATTTTGCTTCT 57.833 33.333 0.00 0.00 41.07 2.85
3077 3135 7.910683 GCTACAACCATAGTAGAATTTTGCTTC 59.089 37.037 4.66 0.00 41.07 3.86
3078 3136 7.393234 TGCTACAACCATAGTAGAATTTTGCTT 59.607 33.333 4.66 0.00 41.07 3.91
3079 3137 6.884295 TGCTACAACCATAGTAGAATTTTGCT 59.116 34.615 4.66 0.00 41.07 3.91
3080 3138 7.083875 TGCTACAACCATAGTAGAATTTTGC 57.916 36.000 4.66 0.00 41.07 3.68
3081 3139 9.906660 TTTTGCTACAACCATAGTAGAATTTTG 57.093 29.630 4.66 0.00 41.07 2.44
3085 3143 9.461312 TGATTTTTGCTACAACCATAGTAGAAT 57.539 29.630 4.66 0.00 41.07 2.40
3086 3144 8.856153 TGATTTTTGCTACAACCATAGTAGAA 57.144 30.769 4.66 0.00 41.07 2.10
3087 3145 8.856153 TTGATTTTTGCTACAACCATAGTAGA 57.144 30.769 4.66 0.00 41.07 2.59
3088 3146 9.341899 GTTTGATTTTTGCTACAACCATAGTAG 57.658 33.333 0.00 0.00 41.41 2.57
3089 3147 8.851145 TGTTTGATTTTTGCTACAACCATAGTA 58.149 29.630 0.00 0.00 0.00 1.82
3090 3148 7.651704 GTGTTTGATTTTTGCTACAACCATAGT 59.348 33.333 0.00 0.00 0.00 2.12
3091 3149 7.867403 AGTGTTTGATTTTTGCTACAACCATAG 59.133 33.333 0.00 0.00 0.00 2.23
3092 3150 7.651304 CAGTGTTTGATTTTTGCTACAACCATA 59.349 33.333 0.00 0.00 0.00 2.74
3093 3151 6.479660 CAGTGTTTGATTTTTGCTACAACCAT 59.520 34.615 0.00 0.00 0.00 3.55
3094 3152 5.809562 CAGTGTTTGATTTTTGCTACAACCA 59.190 36.000 0.00 0.00 0.00 3.67
3095 3153 5.810074 ACAGTGTTTGATTTTTGCTACAACC 59.190 36.000 0.00 0.00 0.00 3.77
3096 3154 6.291060 CGACAGTGTTTGATTTTTGCTACAAC 60.291 38.462 0.00 0.00 0.00 3.32
3097 3155 5.741510 CGACAGTGTTTGATTTTTGCTACAA 59.258 36.000 0.00 0.00 0.00 2.41
3098 3156 5.270083 CGACAGTGTTTGATTTTTGCTACA 58.730 37.500 0.00 0.00 0.00 2.74
3099 3157 4.146443 GCGACAGTGTTTGATTTTTGCTAC 59.854 41.667 0.00 0.00 0.00 3.58
3100 3158 4.286910 GCGACAGTGTTTGATTTTTGCTA 58.713 39.130 0.00 0.00 0.00 3.49
3101 3159 3.115554 GCGACAGTGTTTGATTTTTGCT 58.884 40.909 0.00 0.00 0.00 3.91
3102 3160 3.487985 GCGACAGTGTTTGATTTTTGC 57.512 42.857 0.00 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.