Multiple sequence alignment - TraesCS1A01G277300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G277300 chr1A 100.000 3138 0 0 1 3138 472431241 472428104 0.000000e+00 5795.0
1 TraesCS1A01G277300 chr1D 94.067 1871 79 15 1 1862 234331399 234329552 0.000000e+00 2811.0
2 TraesCS1A01G277300 chr1D 94.884 430 21 1 2259 2687 234329554 234329125 0.000000e+00 671.0
3 TraesCS1A01G277300 chr1D 96.758 401 7 4 2686 3083 234329043 234328646 0.000000e+00 664.0
4 TraesCS1A01G277300 chr2D 91.855 884 65 4 980 1862 49051030 49050153 0.000000e+00 1227.0
5 TraesCS1A01G277300 chr2D 89.893 841 60 10 2259 3083 49050155 49049324 0.000000e+00 1059.0
6 TraesCS1A01G277300 chr2D 89.962 797 57 9 2302 3083 49008173 49007385 0.000000e+00 1007.0
7 TraesCS1A01G277300 chr2D 89.474 703 64 4 285 980 49061435 49060736 0.000000e+00 880.0
8 TraesCS1A01G277300 chr2D 91.440 257 20 2 980 1235 49008425 49008170 4.980000e-93 351.0
9 TraesCS1A01G277300 chr7D 86.842 988 107 13 274 1251 402029129 402030103 0.000000e+00 1083.0
10 TraesCS1A01G277300 chr7D 90.444 586 45 5 1275 1859 402030095 402030670 0.000000e+00 761.0
11 TraesCS1A01G277300 chr7D 90.460 587 43 7 1275 1859 402048248 402048823 0.000000e+00 761.0
12 TraesCS1A01G277300 chr7D 87.057 649 72 6 274 919 402047313 402047952 0.000000e+00 723.0
13 TraesCS1A01G277300 chr7D 89.689 514 36 11 2260 2769 402048824 402049324 9.490000e-180 640.0
14 TraesCS1A01G277300 chr7D 90.446 314 25 5 2459 2768 402030831 402031143 2.910000e-110 409.0
15 TraesCS1A01G277300 chr7D 85.535 318 26 9 2777 3080 402031618 402031929 6.530000e-82 315.0
16 TraesCS1A01G277300 chr7D 88.108 185 17 3 2898 3080 402081888 402082069 6.820000e-52 215.0
17 TraesCS1A01G277300 chr7D 90.123 162 14 2 2260 2420 402030671 402030831 3.170000e-50 209.0
18 TraesCS1A01G277300 chr7D 87.333 150 18 1 135 284 402047137 402047285 1.500000e-38 171.0
19 TraesCS1A01G277300 chr7D 84.496 129 10 4 2782 2900 402049805 402049933 5.500000e-23 119.0
20 TraesCS1A01G277300 chr7D 84.615 104 13 3 8 110 402046982 402047083 1.990000e-17 100.0
21 TraesCS1A01G277300 chr7A 86.067 1012 111 12 274 1283 29438120 29439103 0.000000e+00 1061.0
22 TraesCS1A01G277300 chr7A 98.254 401 6 1 1868 2267 712450150 712449750 0.000000e+00 701.0
23 TraesCS1A01G277300 chr7A 88.235 323 21 12 1281 1603 29439358 29439663 1.370000e-98 370.0
24 TraesCS1A01G277300 chr7A 86.364 66 4 4 1 63 29435759 29435822 2.020000e-07 67.6
25 TraesCS1A01G277300 chrUn 90.601 649 52 6 1214 1859 96703443 96704085 0.000000e+00 852.0
26 TraesCS1A01G277300 chrUn 85.441 522 68 8 2259 2775 96704086 96704604 1.280000e-148 536.0
27 TraesCS1A01G277300 chrUn 80.757 317 31 12 2778 3083 96705007 96705304 1.470000e-53 220.0
28 TraesCS1A01G277300 chrUn 92.453 53 4 0 2976 3028 96705152 96705204 3.360000e-10 76.8
29 TraesCS1A01G277300 chr2A 97.761 402 8 1 1868 2268 7734345 7733944 0.000000e+00 691.0
30 TraesCS1A01G277300 chr3B 94.514 401 20 2 1868 2266 448566986 448566586 4.450000e-173 617.0
31 TraesCS1A01G277300 chr6B 92.978 413 27 2 1868 2279 146644684 146644273 4.480000e-168 601.0
32 TraesCS1A01G277300 chr6B 92.786 402 28 1 1868 2268 29239236 29238835 5.830000e-162 580.0
33 TraesCS1A01G277300 chr6B 89.447 398 40 2 1868 2263 720137985 720138382 4.670000e-138 501.0
34 TraesCS1A01G277300 chr6B 89.447 398 39 3 1868 2263 720052088 720052484 1.680000e-137 499.0
35 TraesCS1A01G277300 chr4A 90.452 398 37 1 1868 2264 716971258 716970861 9.970000e-145 523.0
36 TraesCS1A01G277300 chr5B 90.500 400 26 2 1868 2266 519185334 519184946 4.640000e-143 518.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G277300 chr1A 472428104 472431241 3137 True 5795.000000 5795 100.000000 1 3138 1 chr1A.!!$R1 3137
1 TraesCS1A01G277300 chr1D 234328646 234331399 2753 True 1382.000000 2811 95.236333 1 3083 3 chr1D.!!$R1 3082
2 TraesCS1A01G277300 chr2D 49049324 49051030 1706 True 1143.000000 1227 90.874000 980 3083 2 chr2D.!!$R3 2103
3 TraesCS1A01G277300 chr2D 49060736 49061435 699 True 880.000000 880 89.474000 285 980 1 chr2D.!!$R1 695
4 TraesCS1A01G277300 chr2D 49007385 49008425 1040 True 679.000000 1007 90.701000 980 3083 2 chr2D.!!$R2 2103
5 TraesCS1A01G277300 chr7D 402029129 402031929 2800 False 555.400000 1083 88.678000 274 3080 5 chr7D.!!$F2 2806
6 TraesCS1A01G277300 chr7D 402046982 402049933 2951 False 419.000000 761 87.275000 8 2900 6 chr7D.!!$F3 2892
7 TraesCS1A01G277300 chr7A 29435759 29439663 3904 False 499.533333 1061 86.888667 1 1603 3 chr7A.!!$F1 1602
8 TraesCS1A01G277300 chrUn 96703443 96705304 1861 False 421.200000 852 87.313000 1214 3083 4 chrUn.!!$F1 1869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 2326 0.60813 ATATGAGCTTATCCGCGCCA 59.392 50.0 0.0 0.0 34.4 5.69 F
1966 4539 0.09715 GCGGATCGAAGGAGCAAAAC 59.903 55.0 0.0 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 4629 0.033109 TGAGCCCAGCTAGAGCAGTA 60.033 55.0 4.01 0.0 45.16 2.74 R
3110 6257 6.915786 AGGAATAAAAGAATCCCTAGCATGT 58.084 36.0 0.00 0.0 33.55 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 81 2.668632 CCACACCGTACCCTGCAT 59.331 61.111 0.00 0.00 0.00 3.96
91 2213 4.115199 GCATCCCACTTCCGGCCT 62.115 66.667 0.00 0.00 0.00 5.19
112 2281 2.238319 TACCTCTCCCACCCATCGCT 62.238 60.000 0.00 0.00 0.00 4.93
113 2282 1.457643 CCTCTCCCACCCATCGCTA 60.458 63.158 0.00 0.00 0.00 4.26
114 2283 1.742768 CTCTCCCACCCATCGCTAC 59.257 63.158 0.00 0.00 0.00 3.58
148 2317 1.899814 CCGCTACCCCATATGAGCTTA 59.100 52.381 3.65 0.00 32.60 3.09
152 2321 3.430929 GCTACCCCATATGAGCTTATCCG 60.431 52.174 3.65 0.00 32.04 4.18
157 2326 0.608130 ATATGAGCTTATCCGCGCCA 59.392 50.000 0.00 0.00 34.40 5.69
178 2347 0.744057 CACCAGCCATACATCGTGCA 60.744 55.000 0.00 0.00 0.00 4.57
183 2352 1.224069 GCCATACATCGTGCATCGCT 61.224 55.000 0.00 0.00 39.67 4.93
218 2387 1.306226 CCCCTTCTTCCCTCTCCGT 60.306 63.158 0.00 0.00 0.00 4.69
295 2507 4.143333 CCCTCCGAATCACGCCGT 62.143 66.667 0.00 0.00 41.07 5.68
297 2509 2.180769 CTCCGAATCACGCCGTGA 59.819 61.111 23.51 23.51 46.90 4.35
627 2841 7.496346 TCCCTAATTCTCTCTTGCTTTCTTA 57.504 36.000 0.00 0.00 0.00 2.10
650 2864 2.542550 TGACGGATTGGGGAACTTAGA 58.457 47.619 0.00 0.00 0.00 2.10
688 2902 2.363359 CTCATAAAGATTTGGGGGCTGC 59.637 50.000 0.00 0.00 0.00 5.25
692 2906 0.978907 AAGATTTGGGGGCTGCAAAG 59.021 50.000 0.50 0.00 0.00 2.77
763 2980 3.311110 GAGTGGCTGACCCGTGGA 61.311 66.667 0.00 0.00 35.87 4.02
781 2998 2.740055 GGAGGTGTGTGAGCAGCG 60.740 66.667 0.00 0.00 41.28 5.18
854 3078 2.103094 CCACTTCTCAACACTGACCTCA 59.897 50.000 0.00 0.00 0.00 3.86
907 3131 4.152938 TCAATTCAGCTTTCATGACTGTCG 59.847 41.667 10.60 0.00 33.12 4.35
915 3174 3.592898 TTCATGACTGTCGTATGCTGT 57.407 42.857 1.54 0.00 0.00 4.40
944 3203 3.329386 CTTTGTTCTGCAGAATCCTCGA 58.671 45.455 30.65 15.42 36.33 4.04
970 3229 5.012239 GGATTTGCAGGCTATGGATCAATA 58.988 41.667 0.00 0.00 0.00 1.90
990 3249 1.559682 ACCGCTCCATTGGTCTAACAT 59.440 47.619 1.86 0.00 31.16 2.71
993 3252 3.181465 CCGCTCCATTGGTCTAACATAGT 60.181 47.826 1.86 0.00 0.00 2.12
1053 3312 0.605319 TGTACGGCTTTGGCTTGGAG 60.605 55.000 0.00 0.00 38.73 3.86
1144 3404 7.142680 GCAGCCTTGTAATTTTGTTACAGTTA 58.857 34.615 1.53 0.00 36.40 2.24
1273 3574 9.098355 TGTATGATGTGTCTAAGAAGCATTTAC 57.902 33.333 0.00 0.00 0.00 2.01
1286 3844 6.701340 AGAAGCATTTACTGTCATGTAGTCA 58.299 36.000 8.31 0.00 0.00 3.41
1354 3921 9.433153 GCATATCATCATTGTAGAGATCTTTCA 57.567 33.333 0.00 0.00 0.00 2.69
1465 4032 4.814234 TGGTCTTGTGTTACAGTTGATCAC 59.186 41.667 0.00 0.00 0.00 3.06
1475 4042 2.231478 ACAGTTGATCACTCTACGTGGG 59.769 50.000 0.00 0.00 43.94 4.61
1479 4046 1.831106 TGATCACTCTACGTGGGCATT 59.169 47.619 0.00 0.00 43.94 3.56
1486 4053 5.538813 TCACTCTACGTGGGCATTAGATTAT 59.461 40.000 0.00 0.00 43.94 1.28
1487 4054 6.041637 TCACTCTACGTGGGCATTAGATTATT 59.958 38.462 0.00 0.00 43.94 1.40
1593 4160 5.822519 TGTGCTCTGTGAAACTAAGACAAAT 59.177 36.000 0.00 0.00 38.04 2.32
1673 4241 7.237209 AGAAAAGGCTGCTATCATTTCTTTT 57.763 32.000 0.00 4.27 34.44 2.27
1862 4435 9.454859 AACTCTATGAAGTCCTTTATTTGGAAG 57.545 33.333 0.00 0.00 35.10 3.46
1863 4436 8.049721 ACTCTATGAAGTCCTTTATTTGGAAGG 58.950 37.037 0.00 0.00 44.06 3.46
1864 4437 7.928873 TCTATGAAGTCCTTTATTTGGAAGGT 58.071 34.615 3.11 0.00 43.35 3.50
1865 4438 8.390921 TCTATGAAGTCCTTTATTTGGAAGGTT 58.609 33.333 3.11 0.00 43.35 3.50
1866 4439 9.681062 CTATGAAGTCCTTTATTTGGAAGGTTA 57.319 33.333 3.11 0.00 43.35 2.85
1867 4440 7.996098 TGAAGTCCTTTATTTGGAAGGTTAG 57.004 36.000 3.11 0.00 43.35 2.34
1868 4441 7.751646 TGAAGTCCTTTATTTGGAAGGTTAGA 58.248 34.615 3.11 0.00 43.35 2.10
1869 4442 7.883311 TGAAGTCCTTTATTTGGAAGGTTAGAG 59.117 37.037 3.11 0.00 43.35 2.43
1870 4443 6.181190 AGTCCTTTATTTGGAAGGTTAGAGC 58.819 40.000 3.11 0.00 43.35 4.09
1871 4444 6.012421 AGTCCTTTATTTGGAAGGTTAGAGCT 60.012 38.462 0.00 0.00 43.35 4.09
1872 4445 6.316640 GTCCTTTATTTGGAAGGTTAGAGCTC 59.683 42.308 5.27 5.27 43.35 4.09
1873 4446 6.215636 TCCTTTATTTGGAAGGTTAGAGCTCT 59.784 38.462 22.17 22.17 43.35 4.09
1874 4447 6.317391 CCTTTATTTGGAAGGTTAGAGCTCTG 59.683 42.308 26.78 2.67 39.05 3.35
1875 4448 6.620877 TTATTTGGAAGGTTAGAGCTCTGA 57.379 37.500 26.78 16.07 0.00 3.27
1876 4449 4.974645 TTTGGAAGGTTAGAGCTCTGAA 57.025 40.909 26.78 13.16 0.00 3.02
1877 4450 4.974645 TTGGAAGGTTAGAGCTCTGAAA 57.025 40.909 26.78 10.81 0.00 2.69
1878 4451 4.974645 TGGAAGGTTAGAGCTCTGAAAA 57.025 40.909 26.78 10.01 0.00 2.29
1879 4452 5.505181 TGGAAGGTTAGAGCTCTGAAAAT 57.495 39.130 26.78 9.56 0.00 1.82
1880 4453 5.248640 TGGAAGGTTAGAGCTCTGAAAATG 58.751 41.667 26.78 0.00 0.00 2.32
1881 4454 4.095632 GGAAGGTTAGAGCTCTGAAAATGC 59.904 45.833 26.78 10.95 0.00 3.56
1882 4455 4.292186 AGGTTAGAGCTCTGAAAATGCA 57.708 40.909 26.78 0.00 0.00 3.96
1883 4456 4.655963 AGGTTAGAGCTCTGAAAATGCAA 58.344 39.130 26.78 6.86 0.00 4.08
1884 4457 5.259632 AGGTTAGAGCTCTGAAAATGCAAT 58.740 37.500 26.78 0.00 0.00 3.56
1885 4458 5.125097 AGGTTAGAGCTCTGAAAATGCAATG 59.875 40.000 26.78 0.00 0.00 2.82
1886 4459 5.105997 GGTTAGAGCTCTGAAAATGCAATGT 60.106 40.000 26.78 0.00 0.00 2.71
1887 4460 6.385033 GTTAGAGCTCTGAAAATGCAATGTT 58.615 36.000 26.78 0.00 0.00 2.71
1888 4461 5.056894 AGAGCTCTGAAAATGCAATGTTC 57.943 39.130 17.42 0.00 41.08 3.18
1889 4462 3.829948 AGCTCTGAAAATGCAATGTTCG 58.170 40.909 0.00 0.00 43.71 3.95
1890 4463 2.343544 GCTCTGAAAATGCAATGTTCGC 59.656 45.455 0.00 0.00 43.71 4.70
1891 4464 3.829948 CTCTGAAAATGCAATGTTCGCT 58.170 40.909 0.00 0.00 43.71 4.93
1892 4465 3.567530 TCTGAAAATGCAATGTTCGCTG 58.432 40.909 0.00 0.00 43.71 5.18
1893 4466 3.004629 TCTGAAAATGCAATGTTCGCTGT 59.995 39.130 0.00 0.00 43.71 4.40
1894 4467 3.051327 TGAAAATGCAATGTTCGCTGTG 58.949 40.909 0.00 0.00 43.71 3.66
1895 4468 2.068837 AAATGCAATGTTCGCTGTGG 57.931 45.000 0.00 0.00 0.00 4.17
1896 4469 0.388907 AATGCAATGTTCGCTGTGGC 60.389 50.000 0.00 0.00 0.00 5.01
1897 4470 2.126346 GCAATGTTCGCTGTGGCC 60.126 61.111 0.00 0.00 34.44 5.36
1898 4471 2.176546 CAATGTTCGCTGTGGCCG 59.823 61.111 0.00 0.00 34.44 6.13
1899 4472 2.031919 AATGTTCGCTGTGGCCGA 59.968 55.556 0.00 0.00 34.44 5.54
1900 4473 2.325082 AATGTTCGCTGTGGCCGAC 61.325 57.895 0.00 0.00 34.44 4.79
1903 4476 4.717629 TTCGCTGTGGCCGACGAG 62.718 66.667 0.00 0.09 35.74 4.18
1920 4493 4.314440 GGCGCAGACTGTGGGTGA 62.314 66.667 17.42 0.00 41.24 4.02
1921 4494 2.740055 GCGCAGACTGTGGGTGAG 60.740 66.667 17.42 0.00 41.24 3.51
1922 4495 2.737180 CGCAGACTGTGGGTGAGT 59.263 61.111 8.20 0.00 34.37 3.41
1923 4496 1.665916 CGCAGACTGTGGGTGAGTG 60.666 63.158 8.20 0.00 34.37 3.51
1924 4497 1.302033 GCAGACTGTGGGTGAGTGG 60.302 63.158 3.99 0.00 0.00 4.00
1925 4498 2.044806 GCAGACTGTGGGTGAGTGGT 62.045 60.000 3.99 0.00 0.00 4.16
1926 4499 0.250038 CAGACTGTGGGTGAGTGGTG 60.250 60.000 0.00 0.00 0.00 4.17
1927 4500 1.071471 GACTGTGGGTGAGTGGTGG 59.929 63.158 0.00 0.00 0.00 4.61
1928 4501 2.397413 GACTGTGGGTGAGTGGTGGG 62.397 65.000 0.00 0.00 0.00 4.61
1929 4502 2.040359 TGTGGGTGAGTGGTGGGA 60.040 61.111 0.00 0.00 0.00 4.37
1930 4503 2.116983 CTGTGGGTGAGTGGTGGGAG 62.117 65.000 0.00 0.00 0.00 4.30
1931 4504 1.841556 GTGGGTGAGTGGTGGGAGA 60.842 63.158 0.00 0.00 0.00 3.71
1932 4505 1.536418 TGGGTGAGTGGTGGGAGAG 60.536 63.158 0.00 0.00 0.00 3.20
1933 4506 2.294078 GGGTGAGTGGTGGGAGAGG 61.294 68.421 0.00 0.00 0.00 3.69
1934 4507 2.665603 GTGAGTGGTGGGAGAGGC 59.334 66.667 0.00 0.00 0.00 4.70
1935 4508 1.915769 GTGAGTGGTGGGAGAGGCT 60.916 63.158 0.00 0.00 0.00 4.58
1936 4509 1.610673 TGAGTGGTGGGAGAGGCTC 60.611 63.158 6.34 6.34 0.00 4.70
1937 4510 1.305718 GAGTGGTGGGAGAGGCTCT 60.306 63.158 18.80 18.80 0.00 4.09
1938 4511 1.611851 AGTGGTGGGAGAGGCTCTG 60.612 63.158 24.21 0.00 0.00 3.35
1939 4512 3.005539 TGGTGGGAGAGGCTCTGC 61.006 66.667 26.00 26.00 33.75 4.26
1940 4513 2.686835 GGTGGGAGAGGCTCTGCT 60.687 66.667 31.02 5.13 35.01 4.24
1941 4514 2.730524 GGTGGGAGAGGCTCTGCTC 61.731 68.421 31.02 23.52 35.01 4.26
1944 4517 4.219999 GGAGAGGCTCTGCTCCGC 62.220 72.222 26.56 9.27 41.10 5.54
1945 4518 4.219999 GAGAGGCTCTGCTCCGCC 62.220 72.222 24.21 0.95 46.65 6.13
1960 4533 4.951963 GCCGGCGGATCGAAGGAG 62.952 72.222 33.44 0.00 0.00 3.69
1961 4534 4.951963 CCGGCGGATCGAAGGAGC 62.952 72.222 24.41 0.00 0.00 4.70
1962 4535 4.207281 CGGCGGATCGAAGGAGCA 62.207 66.667 0.00 0.00 0.00 4.26
1963 4536 2.186903 GGCGGATCGAAGGAGCAA 59.813 61.111 0.00 0.00 0.00 3.91
1964 4537 1.449601 GGCGGATCGAAGGAGCAAA 60.450 57.895 0.00 0.00 0.00 3.68
1965 4538 1.024579 GGCGGATCGAAGGAGCAAAA 61.025 55.000 0.00 0.00 0.00 2.44
1966 4539 0.097150 GCGGATCGAAGGAGCAAAAC 59.903 55.000 0.00 0.00 0.00 2.43
1967 4540 1.438651 CGGATCGAAGGAGCAAAACA 58.561 50.000 0.00 0.00 0.00 2.83
1968 4541 1.394917 CGGATCGAAGGAGCAAAACAG 59.605 52.381 0.00 0.00 0.00 3.16
1969 4542 1.740025 GGATCGAAGGAGCAAAACAGG 59.260 52.381 0.00 0.00 0.00 4.00
1970 4543 2.427506 GATCGAAGGAGCAAAACAGGT 58.572 47.619 0.00 0.00 0.00 4.00
1971 4544 2.341846 TCGAAGGAGCAAAACAGGTT 57.658 45.000 0.00 0.00 0.00 3.50
1972 4545 1.946768 TCGAAGGAGCAAAACAGGTTG 59.053 47.619 0.00 0.00 0.00 3.77
1973 4546 1.946768 CGAAGGAGCAAAACAGGTTGA 59.053 47.619 0.00 0.00 0.00 3.18
1974 4547 2.357637 CGAAGGAGCAAAACAGGTTGAA 59.642 45.455 0.00 0.00 0.00 2.69
1975 4548 3.004734 CGAAGGAGCAAAACAGGTTGAAT 59.995 43.478 0.00 0.00 0.00 2.57
1976 4549 4.215399 CGAAGGAGCAAAACAGGTTGAATA 59.785 41.667 0.00 0.00 0.00 1.75
1977 4550 5.106157 CGAAGGAGCAAAACAGGTTGAATAT 60.106 40.000 0.00 0.00 0.00 1.28
1978 4551 5.649782 AGGAGCAAAACAGGTTGAATATG 57.350 39.130 0.00 0.00 0.00 1.78
1979 4552 5.324409 AGGAGCAAAACAGGTTGAATATGA 58.676 37.500 0.00 0.00 0.00 2.15
1980 4553 5.183904 AGGAGCAAAACAGGTTGAATATGAC 59.816 40.000 0.00 0.00 0.00 3.06
1981 4554 5.391312 AGCAAAACAGGTTGAATATGACC 57.609 39.130 0.00 0.00 36.15 4.02
1982 4555 4.082787 AGCAAAACAGGTTGAATATGACCG 60.083 41.667 0.00 0.00 40.89 4.79
1983 4556 4.320935 GCAAAACAGGTTGAATATGACCGT 60.321 41.667 0.00 0.00 40.89 4.83
1984 4557 5.153513 CAAAACAGGTTGAATATGACCGTG 58.846 41.667 0.00 0.00 40.89 4.94
1985 4558 2.985896 ACAGGTTGAATATGACCGTGG 58.014 47.619 0.00 0.00 40.89 4.94
1986 4559 1.670811 CAGGTTGAATATGACCGTGGC 59.329 52.381 0.00 0.00 40.89 5.01
1987 4560 1.280710 AGGTTGAATATGACCGTGGCA 59.719 47.619 0.00 0.00 40.89 4.92
1988 4561 1.670811 GGTTGAATATGACCGTGGCAG 59.329 52.381 0.00 0.00 0.00 4.85
1989 4562 1.064060 GTTGAATATGACCGTGGCAGC 59.936 52.381 0.00 0.00 0.00 5.25
1990 4563 0.463654 TGAATATGACCGTGGCAGCC 60.464 55.000 3.66 3.66 0.00 4.85
1991 4564 0.179045 GAATATGACCGTGGCAGCCT 60.179 55.000 14.15 0.00 0.00 4.58
1992 4565 1.070134 GAATATGACCGTGGCAGCCTA 59.930 52.381 14.15 0.00 0.00 3.93
1993 4566 0.393077 ATATGACCGTGGCAGCCTAC 59.607 55.000 14.15 8.42 0.00 3.18
1994 4567 0.973496 TATGACCGTGGCAGCCTACA 60.973 55.000 14.15 6.06 0.00 2.74
1995 4568 2.434359 GACCGTGGCAGCCTACAC 60.434 66.667 14.15 1.04 0.00 2.90
1996 4569 2.923035 ACCGTGGCAGCCTACACT 60.923 61.111 14.15 0.00 35.51 3.55
1997 4570 2.434884 CCGTGGCAGCCTACACTG 60.435 66.667 14.15 0.00 40.80 3.66
1998 4571 2.343758 CGTGGCAGCCTACACTGT 59.656 61.111 14.15 0.00 39.96 3.55
1999 4572 2.029288 CGTGGCAGCCTACACTGTG 61.029 63.158 14.15 6.19 39.96 3.66
2000 4573 1.071471 GTGGCAGCCTACACTGTGT 59.929 57.895 18.51 18.51 39.96 3.72
2001 4574 1.071299 TGGCAGCCTACACTGTGTG 59.929 57.895 22.97 12.48 39.96 3.82
2002 4575 1.672356 GGCAGCCTACACTGTGTGG 60.672 63.158 22.97 19.59 39.96 4.17
2003 4576 1.371183 GCAGCCTACACTGTGTGGA 59.629 57.895 23.64 4.60 39.96 4.02
2004 4577 0.250295 GCAGCCTACACTGTGTGGAA 60.250 55.000 23.64 3.87 39.96 3.53
2005 4578 1.512926 CAGCCTACACTGTGTGGAAC 58.487 55.000 23.64 15.39 37.94 3.62
2006 4579 0.396811 AGCCTACACTGTGTGGAACC 59.603 55.000 23.64 12.18 37.94 3.62
2007 4580 0.396811 GCCTACACTGTGTGGAACCT 59.603 55.000 23.64 0.00 37.94 3.50
2008 4581 1.608283 GCCTACACTGTGTGGAACCTC 60.608 57.143 23.64 6.94 37.94 3.85
2009 4582 1.971357 CCTACACTGTGTGGAACCTCT 59.029 52.381 23.64 0.00 37.94 3.69
2010 4583 2.289072 CCTACACTGTGTGGAACCTCTG 60.289 54.545 23.64 3.34 37.94 3.35
2011 4584 0.469917 ACACTGTGTGGAACCTCTGG 59.530 55.000 13.50 0.00 37.94 3.86
2012 4585 0.758734 CACTGTGTGGAACCTCTGGA 59.241 55.000 0.00 0.00 34.36 3.86
2013 4586 1.140852 CACTGTGTGGAACCTCTGGAA 59.859 52.381 0.00 0.00 34.36 3.53
2014 4587 1.417890 ACTGTGTGGAACCTCTGGAAG 59.582 52.381 0.00 0.00 34.36 3.46
2028 4601 4.180057 CTCTGGAAGGAGAGAAATCAACG 58.820 47.826 0.00 0.00 41.95 4.10
2029 4602 3.832490 TCTGGAAGGAGAGAAATCAACGA 59.168 43.478 0.00 0.00 0.00 3.85
2030 4603 4.081972 TCTGGAAGGAGAGAAATCAACGAG 60.082 45.833 0.00 0.00 0.00 4.18
2031 4604 3.578716 TGGAAGGAGAGAAATCAACGAGT 59.421 43.478 0.00 0.00 0.00 4.18
2032 4605 4.770531 TGGAAGGAGAGAAATCAACGAGTA 59.229 41.667 0.00 0.00 0.00 2.59
2033 4606 5.422331 TGGAAGGAGAGAAATCAACGAGTAT 59.578 40.000 0.00 0.00 0.00 2.12
2034 4607 6.070767 TGGAAGGAGAGAAATCAACGAGTATT 60.071 38.462 0.00 0.00 0.00 1.89
2035 4608 6.477360 GGAAGGAGAGAAATCAACGAGTATTC 59.523 42.308 0.00 0.00 0.00 1.75
2052 4625 7.617533 GAGTATTCGAGAATAAAGAGCTGAC 57.382 40.000 7.07 0.00 35.30 3.51
2053 4626 7.341445 AGTATTCGAGAATAAAGAGCTGACT 57.659 36.000 7.07 0.00 35.30 3.41
2054 4627 7.199766 AGTATTCGAGAATAAAGAGCTGACTG 58.800 38.462 7.07 0.00 35.30 3.51
2055 4628 3.775202 TCGAGAATAAAGAGCTGACTGC 58.225 45.455 0.00 0.00 43.29 4.40
2056 4629 6.183360 TATTCGAGAATAAAGAGCTGACTGCT 60.183 38.462 6.53 6.53 41.33 4.24
2057 4630 7.013369 TATTCGAGAATAAAGAGCTGACTGCTA 59.987 37.037 6.84 0.00 40.00 3.49
2066 4639 2.490328 GCTGACTGCTACTGCTCTAG 57.510 55.000 0.00 0.00 40.48 2.43
2067 4640 1.535860 GCTGACTGCTACTGCTCTAGC 60.536 57.143 6.33 6.33 39.81 3.42
2068 4641 2.023673 CTGACTGCTACTGCTCTAGCT 58.976 52.381 12.61 0.00 40.02 3.32
2069 4642 1.747924 TGACTGCTACTGCTCTAGCTG 59.252 52.381 14.39 14.39 41.87 4.24
2070 4643 1.066908 GACTGCTACTGCTCTAGCTGG 59.933 57.143 17.92 0.00 40.96 4.85
2071 4644 0.388659 CTGCTACTGCTCTAGCTGGG 59.611 60.000 12.64 6.73 43.15 4.45
2072 4645 1.068921 GCTACTGCTCTAGCTGGGC 59.931 63.158 12.64 11.73 43.15 5.36
2073 4646 1.398958 GCTACTGCTCTAGCTGGGCT 61.399 60.000 12.64 0.00 43.15 5.19
2074 4647 0.673437 CTACTGCTCTAGCTGGGCTC 59.327 60.000 12.64 0.00 43.15 4.70
2075 4648 0.033109 TACTGCTCTAGCTGGGCTCA 60.033 55.000 12.64 0.00 43.15 4.26
2076 4649 0.690411 ACTGCTCTAGCTGGGCTCAT 60.690 55.000 12.64 0.00 43.15 2.90
2077 4650 0.033781 CTGCTCTAGCTGGGCTCATC 59.966 60.000 10.85 0.00 40.44 2.92
2078 4651 0.688749 TGCTCTAGCTGGGCTCATCA 60.689 55.000 10.85 0.00 40.44 3.07
2079 4652 0.467384 GCTCTAGCTGGGCTCATCAA 59.533 55.000 0.00 0.00 40.44 2.57
2080 4653 1.540797 GCTCTAGCTGGGCTCATCAAG 60.541 57.143 0.00 0.00 40.44 3.02
2081 4654 1.070445 CTCTAGCTGGGCTCATCAAGG 59.930 57.143 0.00 0.00 40.44 3.61
2082 4655 1.126488 CTAGCTGGGCTCATCAAGGA 58.874 55.000 0.00 0.00 40.44 3.36
2083 4656 1.698532 CTAGCTGGGCTCATCAAGGAT 59.301 52.381 0.00 0.00 40.44 3.24
2084 4657 0.183014 AGCTGGGCTCATCAAGGATG 59.817 55.000 0.00 0.00 41.00 3.51
2085 4658 0.182061 GCTGGGCTCATCAAGGATGA 59.818 55.000 8.48 8.48 45.35 2.92
2086 4659 1.964552 CTGGGCTCATCAAGGATGAC 58.035 55.000 4.86 3.36 43.11 3.06
2087 4660 1.211212 CTGGGCTCATCAAGGATGACA 59.789 52.381 4.86 2.20 43.11 3.58
2088 4661 1.848388 TGGGCTCATCAAGGATGACAT 59.152 47.619 4.86 0.00 43.11 3.06
2089 4662 2.158711 TGGGCTCATCAAGGATGACATC 60.159 50.000 6.91 6.91 43.11 3.06
2090 4663 2.158711 GGGCTCATCAAGGATGACATCA 60.159 50.000 17.08 0.00 43.11 3.07
2091 4664 3.548770 GGCTCATCAAGGATGACATCAA 58.451 45.455 17.08 0.23 43.11 2.57
2092 4665 3.564644 GGCTCATCAAGGATGACATCAAG 59.435 47.826 17.08 6.27 43.11 3.02
2093 4666 4.197750 GCTCATCAAGGATGACATCAAGT 58.802 43.478 17.08 0.00 43.11 3.16
2094 4667 4.035324 GCTCATCAAGGATGACATCAAGTG 59.965 45.833 17.08 10.91 43.11 3.16
2095 4668 3.943381 TCATCAAGGATGACATCAAGTGC 59.057 43.478 17.08 0.00 43.11 4.40
2096 4669 3.708403 TCAAGGATGACATCAAGTGCT 57.292 42.857 17.08 1.84 0.00 4.40
2097 4670 4.025040 TCAAGGATGACATCAAGTGCTT 57.975 40.909 17.08 7.74 0.00 3.91
2098 4671 4.401022 TCAAGGATGACATCAAGTGCTTT 58.599 39.130 17.08 0.00 0.00 3.51
2099 4672 4.216902 TCAAGGATGACATCAAGTGCTTTG 59.783 41.667 17.08 8.97 38.17 2.77
2100 4673 3.087031 AGGATGACATCAAGTGCTTTGG 58.913 45.455 17.08 0.00 37.39 3.28
2101 4674 2.165030 GGATGACATCAAGTGCTTTGGG 59.835 50.000 17.08 0.00 37.39 4.12
2102 4675 1.619654 TGACATCAAGTGCTTTGGGG 58.380 50.000 2.44 0.00 37.39 4.96
2103 4676 1.144708 TGACATCAAGTGCTTTGGGGA 59.855 47.619 2.44 0.00 37.39 4.81
2104 4677 1.815003 GACATCAAGTGCTTTGGGGAG 59.185 52.381 2.44 0.00 37.39 4.30
2105 4678 1.180029 CATCAAGTGCTTTGGGGAGG 58.820 55.000 2.44 0.00 37.39 4.30
2106 4679 0.613012 ATCAAGTGCTTTGGGGAGGC 60.613 55.000 2.44 0.00 37.39 4.70
2107 4680 1.531365 CAAGTGCTTTGGGGAGGCA 60.531 57.895 0.00 0.00 32.95 4.75
2108 4681 1.114722 CAAGTGCTTTGGGGAGGCAA 61.115 55.000 0.00 0.00 37.73 4.52
2109 4682 1.115326 AAGTGCTTTGGGGAGGCAAC 61.115 55.000 0.00 0.00 37.73 4.17
2142 4715 4.794278 CCTTTGTAGGGCCGTAATTTTT 57.206 40.909 6.76 0.00 37.94 1.94
2162 4735 3.936372 TTCTGTCTCCTAAACCTCACG 57.064 47.619 0.00 0.00 0.00 4.35
2163 4736 2.872732 TCTGTCTCCTAAACCTCACGT 58.127 47.619 0.00 0.00 0.00 4.49
2164 4737 3.228453 TCTGTCTCCTAAACCTCACGTT 58.772 45.455 0.00 0.00 35.70 3.99
2165 4738 3.005472 TCTGTCTCCTAAACCTCACGTTG 59.995 47.826 0.00 0.00 33.93 4.10
2166 4739 2.696707 TGTCTCCTAAACCTCACGTTGT 59.303 45.455 0.00 0.00 33.93 3.32
2167 4740 3.890756 TGTCTCCTAAACCTCACGTTGTA 59.109 43.478 0.00 0.00 33.93 2.41
2168 4741 4.341806 TGTCTCCTAAACCTCACGTTGTAA 59.658 41.667 0.00 0.00 33.93 2.41
2169 4742 5.011329 TGTCTCCTAAACCTCACGTTGTAAT 59.989 40.000 0.00 0.00 33.93 1.89
2170 4743 5.347907 GTCTCCTAAACCTCACGTTGTAATG 59.652 44.000 0.00 0.00 33.93 1.90
2171 4744 5.011329 TCTCCTAAACCTCACGTTGTAATGT 59.989 40.000 0.00 0.00 33.93 2.71
2172 4745 4.992319 TCCTAAACCTCACGTTGTAATGTG 59.008 41.667 10.03 10.03 45.13 3.21
2173 4746 4.153475 CCTAAACCTCACGTTGTAATGTGG 59.847 45.833 14.90 4.88 44.17 4.17
2174 4747 2.178912 ACCTCACGTTGTAATGTGGG 57.821 50.000 14.90 12.25 44.26 4.61
2175 4748 1.695242 ACCTCACGTTGTAATGTGGGA 59.305 47.619 16.40 0.00 46.92 4.37
2176 4749 2.304761 ACCTCACGTTGTAATGTGGGAT 59.695 45.455 16.40 0.00 46.92 3.85
2177 4750 2.677836 CCTCACGTTGTAATGTGGGATG 59.322 50.000 16.40 0.00 46.92 3.51
2178 4751 2.080693 TCACGTTGTAATGTGGGATGC 58.919 47.619 14.90 0.00 44.17 3.91
2179 4752 1.083489 ACGTTGTAATGTGGGATGCG 58.917 50.000 0.00 0.00 0.00 4.73
2180 4753 1.338294 ACGTTGTAATGTGGGATGCGA 60.338 47.619 0.00 0.00 0.00 5.10
2181 4754 1.062002 CGTTGTAATGTGGGATGCGAC 59.938 52.381 0.00 0.00 0.00 5.19
2182 4755 1.400494 GTTGTAATGTGGGATGCGACC 59.600 52.381 0.00 0.00 0.00 4.79
2183 4756 0.908910 TGTAATGTGGGATGCGACCT 59.091 50.000 0.00 0.00 0.00 3.85
2184 4757 1.134521 TGTAATGTGGGATGCGACCTC 60.135 52.381 0.00 0.00 0.00 3.85
2185 4758 0.468226 TAATGTGGGATGCGACCTCC 59.532 55.000 0.00 0.00 0.00 4.30
2186 4759 1.274703 AATGTGGGATGCGACCTCCT 61.275 55.000 0.00 0.00 33.05 3.69
2187 4760 1.690219 ATGTGGGATGCGACCTCCTC 61.690 60.000 0.00 0.00 33.05 3.71
2188 4761 2.060980 GTGGGATGCGACCTCCTCT 61.061 63.158 0.00 0.00 33.05 3.69
2189 4762 1.758514 TGGGATGCGACCTCCTCTC 60.759 63.158 0.00 0.00 33.05 3.20
2190 4763 2.725008 GGATGCGACCTCCTCTCG 59.275 66.667 0.00 0.00 0.00 4.04
2191 4764 2.122167 GGATGCGACCTCCTCTCGT 61.122 63.158 0.00 0.00 33.51 4.18
2192 4765 1.668101 GGATGCGACCTCCTCTCGTT 61.668 60.000 0.00 0.00 33.51 3.85
2193 4766 0.526524 GATGCGACCTCCTCTCGTTG 60.527 60.000 0.00 0.00 33.51 4.10
2194 4767 1.949847 ATGCGACCTCCTCTCGTTGG 61.950 60.000 0.00 0.00 33.51 3.77
2195 4768 2.637383 GCGACCTCCTCTCGTTGGT 61.637 63.158 0.00 0.00 33.51 3.67
2196 4769 1.507174 CGACCTCCTCTCGTTGGTC 59.493 63.158 0.00 0.00 43.86 4.02
2197 4770 1.891616 GACCTCCTCTCGTTGGTCC 59.108 63.158 0.00 0.00 42.11 4.46
2198 4771 0.898789 GACCTCCTCTCGTTGGTCCA 60.899 60.000 0.00 0.00 42.11 4.02
2199 4772 0.252284 ACCTCCTCTCGTTGGTCCAT 60.252 55.000 0.00 0.00 0.00 3.41
2200 4773 0.461961 CCTCCTCTCGTTGGTCCATC 59.538 60.000 0.00 0.00 0.00 3.51
2201 4774 0.461961 CTCCTCTCGTTGGTCCATCC 59.538 60.000 0.00 0.00 0.00 3.51
2202 4775 1.141881 CCTCTCGTTGGTCCATCCG 59.858 63.158 0.00 0.00 39.52 4.18
2203 4776 1.605058 CCTCTCGTTGGTCCATCCGT 61.605 60.000 10.30 0.00 39.52 4.69
2204 4777 0.246635 CTCTCGTTGGTCCATCCGTT 59.753 55.000 10.30 0.00 39.52 4.44
2205 4778 0.682852 TCTCGTTGGTCCATCCGTTT 59.317 50.000 10.30 0.00 39.52 3.60
2206 4779 1.076332 CTCGTTGGTCCATCCGTTTC 58.924 55.000 10.30 0.00 39.52 2.78
2207 4780 0.682852 TCGTTGGTCCATCCGTTTCT 59.317 50.000 10.30 0.00 39.52 2.52
2208 4781 0.796312 CGTTGGTCCATCCGTTTCTG 59.204 55.000 0.00 0.00 39.52 3.02
2209 4782 1.876416 CGTTGGTCCATCCGTTTCTGT 60.876 52.381 0.00 0.00 39.52 3.41
2210 4783 2.610976 CGTTGGTCCATCCGTTTCTGTA 60.611 50.000 0.00 0.00 39.52 2.74
2211 4784 3.606687 GTTGGTCCATCCGTTTCTGTAT 58.393 45.455 0.00 0.00 39.52 2.29
2212 4785 3.260475 TGGTCCATCCGTTTCTGTATG 57.740 47.619 0.00 0.00 39.52 2.39
2213 4786 2.569853 TGGTCCATCCGTTTCTGTATGT 59.430 45.455 0.00 0.00 39.52 2.29
2214 4787 3.195661 GGTCCATCCGTTTCTGTATGTC 58.804 50.000 0.00 0.00 0.00 3.06
2215 4788 3.118738 GGTCCATCCGTTTCTGTATGTCT 60.119 47.826 0.00 0.00 0.00 3.41
2216 4789 4.504858 GTCCATCCGTTTCTGTATGTCTT 58.495 43.478 0.00 0.00 0.00 3.01
2217 4790 4.567159 GTCCATCCGTTTCTGTATGTCTTC 59.433 45.833 0.00 0.00 0.00 2.87
2218 4791 4.466370 TCCATCCGTTTCTGTATGTCTTCT 59.534 41.667 0.00 0.00 0.00 2.85
2219 4792 4.806247 CCATCCGTTTCTGTATGTCTTCTC 59.194 45.833 0.00 0.00 0.00 2.87
2220 4793 5.394663 CCATCCGTTTCTGTATGTCTTCTCT 60.395 44.000 0.00 0.00 0.00 3.10
2221 4794 5.723672 TCCGTTTCTGTATGTCTTCTCTT 57.276 39.130 0.00 0.00 0.00 2.85
2222 4795 5.710984 TCCGTTTCTGTATGTCTTCTCTTC 58.289 41.667 0.00 0.00 0.00 2.87
2223 4796 5.477291 TCCGTTTCTGTATGTCTTCTCTTCT 59.523 40.000 0.00 0.00 0.00 2.85
2224 4797 6.657966 TCCGTTTCTGTATGTCTTCTCTTCTA 59.342 38.462 0.00 0.00 0.00 2.10
2225 4798 7.339721 TCCGTTTCTGTATGTCTTCTCTTCTAT 59.660 37.037 0.00 0.00 0.00 1.98
2226 4799 8.622157 CCGTTTCTGTATGTCTTCTCTTCTATA 58.378 37.037 0.00 0.00 0.00 1.31
2230 4803 9.973450 TTCTGTATGTCTTCTCTTCTATAATGC 57.027 33.333 0.00 0.00 0.00 3.56
2231 4804 9.136323 TCTGTATGTCTTCTCTTCTATAATGCA 57.864 33.333 0.00 0.00 0.00 3.96
2232 4805 9.755804 CTGTATGTCTTCTCTTCTATAATGCAA 57.244 33.333 0.00 0.00 0.00 4.08
2235 4808 8.674263 ATGTCTTCTCTTCTATAATGCAAAGG 57.326 34.615 0.00 0.00 0.00 3.11
2236 4809 6.540189 TGTCTTCTCTTCTATAATGCAAAGGC 59.460 38.462 0.00 0.00 41.68 4.35
2246 4819 3.588336 GCAAAGGCAGAGCTCCTG 58.412 61.111 10.93 9.35 45.67 3.86
2257 4830 4.760757 GCTCCTGCTATTCCCGTC 57.239 61.111 0.00 0.00 36.03 4.79
2355 4931 6.801377 TGCATCTTATTGTTCGTTGATGAAAC 59.199 34.615 0.00 0.00 34.86 2.78
2383 4960 7.065923 GCCCTTATTCGACTAAAGAGAAATTGT 59.934 37.037 0.00 0.00 0.00 2.71
2422 4999 5.163550 GCTGGAAAAGTTTTTGTGTAGTCCT 60.164 40.000 1.64 0.00 0.00 3.85
2442 5019 6.604795 AGTCCTTTTGGTCAGAATATCAATGG 59.395 38.462 0.00 0.00 41.38 3.16
2473 5050 6.084326 TGCTGAAATTTTCCAGTTAACCTC 57.916 37.500 0.88 0.00 33.19 3.85
2541 5119 6.327887 TGGTTATGTATGCAGACTGGGTATTA 59.672 38.462 13.44 0.00 0.00 0.98
3083 6230 2.887783 TCCAGTGAGCGGAGATAGAATC 59.112 50.000 0.00 0.00 0.00 2.52
3084 6231 2.029470 CCAGTGAGCGGAGATAGAATCC 60.029 54.545 0.00 0.00 0.00 3.01
3085 6232 2.625314 CAGTGAGCGGAGATAGAATCCA 59.375 50.000 0.00 0.00 36.57 3.41
3086 6233 2.890311 AGTGAGCGGAGATAGAATCCAG 59.110 50.000 0.00 0.00 36.57 3.86
3087 6234 2.625790 GTGAGCGGAGATAGAATCCAGT 59.374 50.000 0.00 0.00 36.57 4.00
3088 6235 2.625314 TGAGCGGAGATAGAATCCAGTG 59.375 50.000 0.00 0.00 36.57 3.66
3089 6236 2.887783 GAGCGGAGATAGAATCCAGTGA 59.112 50.000 0.00 0.00 36.57 3.41
3090 6237 2.890311 AGCGGAGATAGAATCCAGTGAG 59.110 50.000 0.00 0.00 36.57 3.51
3091 6238 2.625790 GCGGAGATAGAATCCAGTGAGT 59.374 50.000 0.00 0.00 36.57 3.41
3092 6239 3.821600 GCGGAGATAGAATCCAGTGAGTA 59.178 47.826 0.00 0.00 36.57 2.59
3093 6240 4.461081 GCGGAGATAGAATCCAGTGAGTAT 59.539 45.833 0.00 0.00 36.57 2.12
3094 6241 5.047660 GCGGAGATAGAATCCAGTGAGTATT 60.048 44.000 0.00 0.00 36.57 1.89
3095 6242 6.151312 GCGGAGATAGAATCCAGTGAGTATTA 59.849 42.308 0.00 0.00 36.57 0.98
3096 6243 7.147983 GCGGAGATAGAATCCAGTGAGTATTAT 60.148 40.741 0.00 0.00 36.57 1.28
3097 6244 8.187480 CGGAGATAGAATCCAGTGAGTATTATG 58.813 40.741 0.00 0.00 36.57 1.90
3098 6245 9.249053 GGAGATAGAATCCAGTGAGTATTATGA 57.751 37.037 0.00 0.00 36.79 2.15
3100 6247 9.821240 AGATAGAATCCAGTGAGTATTATGAGT 57.179 33.333 0.00 0.00 0.00 3.41
3105 6252 9.988815 GAATCCAGTGAGTATTATGAGTTATGT 57.011 33.333 0.00 0.00 0.00 2.29
3127 6274 7.775053 TGTTTAAACATGCTAGGGATTCTTT 57.225 32.000 17.01 0.00 33.17 2.52
3128 6275 8.189119 TGTTTAAACATGCTAGGGATTCTTTT 57.811 30.769 17.01 0.00 33.17 2.27
3129 6276 9.303116 TGTTTAAACATGCTAGGGATTCTTTTA 57.697 29.630 17.01 0.00 33.17 1.52
3133 6280 7.588497 AACATGCTAGGGATTCTTTTATTCC 57.412 36.000 0.00 0.00 0.00 3.01
3134 6281 6.915786 ACATGCTAGGGATTCTTTTATTCCT 58.084 36.000 0.00 0.00 37.31 3.36
3135 6282 7.357471 ACATGCTAGGGATTCTTTTATTCCTT 58.643 34.615 0.00 0.00 35.11 3.36
3136 6283 8.502738 ACATGCTAGGGATTCTTTTATTCCTTA 58.497 33.333 0.00 0.00 35.11 2.69
3137 6284 8.787852 CATGCTAGGGATTCTTTTATTCCTTAC 58.212 37.037 0.00 0.00 35.11 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 81 1.684734 GTAGAGGCCGGAAGTGGGA 60.685 63.158 5.05 0.00 0.00 4.37
91 2213 0.106167 CGATGGGTGGGAGAGGTAGA 60.106 60.000 0.00 0.00 0.00 2.59
112 2281 3.852307 GGCATACGTGGGGCGGTA 61.852 66.667 0.00 0.00 46.52 4.02
152 2321 4.794648 TATGGCTGGTGGTGGCGC 62.795 66.667 0.00 0.00 0.00 6.53
157 2326 0.107703 CACGATGTATGGCTGGTGGT 60.108 55.000 0.00 0.00 0.00 4.16
178 2347 1.901085 GTGGGGAAGAGACAGCGAT 59.099 57.895 0.00 0.00 0.00 4.58
183 2352 1.911766 GGACCGTGGGGAAGAGACA 60.912 63.158 0.00 0.00 36.97 3.41
218 2387 0.741326 CAAAGATCCGAGAGAGGCGA 59.259 55.000 0.00 0.00 0.00 5.54
260 2429 4.942481 ACACAGCGCGCGTTCTCA 62.942 61.111 32.35 0.00 0.00 3.27
295 2507 5.296151 AGTTGAAGAAGAAGATGTGGTCA 57.704 39.130 0.00 0.00 0.00 4.02
297 2509 4.646572 GGAGTTGAAGAAGAAGATGTGGT 58.353 43.478 0.00 0.00 0.00 4.16
504 2716 4.363990 CCGTCAGCAGCGAGGTGT 62.364 66.667 10.42 0.00 45.77 4.16
627 2841 4.905456 TCTAAGTTCCCCAATCCGTCATAT 59.095 41.667 0.00 0.00 0.00 1.78
650 2864 2.555664 TGAGAATTTCCCTCTCCAGCT 58.444 47.619 0.00 0.00 38.89 4.24
692 2906 1.134007 CCCCAAGGTTTATCCCGTACC 60.134 57.143 0.00 0.00 36.75 3.34
763 2980 2.746359 GCTGCTCACACACCTCCT 59.254 61.111 0.00 0.00 0.00 3.69
781 2998 0.107456 ATCACACAGATCGGGGATGC 59.893 55.000 0.79 0.00 28.20 3.91
790 3007 2.237893 TGGACATGCTGATCACACAGAT 59.762 45.455 0.00 0.00 39.94 2.90
944 3203 3.317455 TCCATAGCCTGCAAATCCATT 57.683 42.857 0.00 0.00 0.00 3.16
970 3229 0.981183 TGTTAGACCAATGGAGCGGT 59.019 50.000 6.16 0.00 38.56 5.68
990 3249 6.686630 CCAAATGCTAAACATGAACCAACTA 58.313 36.000 0.00 0.00 39.60 2.24
993 3252 4.202295 TGCCAAATGCTAAACATGAACCAA 60.202 37.500 0.00 0.00 39.60 3.67
1028 3287 1.995991 CCAAAGCCGTACATCGACG 59.004 57.895 0.00 0.00 42.86 5.12
1286 3844 8.630037 CCTTTTCCAAAAGTAAGTCACAATAGT 58.370 33.333 10.24 0.00 42.92 2.12
1465 4032 6.223852 ACAATAATCTAATGCCCACGTAGAG 58.776 40.000 0.00 0.00 0.00 2.43
1475 4042 8.872845 CAAACCTCCAAAACAATAATCTAATGC 58.127 33.333 0.00 0.00 0.00 3.56
1486 4053 5.451242 GCACACTATCAAACCTCCAAAACAA 60.451 40.000 0.00 0.00 0.00 2.83
1487 4054 4.037446 GCACACTATCAAACCTCCAAAACA 59.963 41.667 0.00 0.00 0.00 2.83
1655 4223 7.066284 TCTGTTAGAAAAGAAATGATAGCAGCC 59.934 37.037 0.00 0.00 0.00 4.85
1673 4241 9.120538 ACATTAAGCTTTGACTTTTCTGTTAGA 57.879 29.630 3.20 0.00 0.00 2.10
1761 4329 6.722129 AGCGACTCCCTGATTATCTTTAGTAT 59.278 38.462 0.00 0.00 0.00 2.12
1859 4432 4.697352 TGCATTTTCAGAGCTCTAACCTTC 59.303 41.667 17.75 4.11 0.00 3.46
1860 4433 4.655963 TGCATTTTCAGAGCTCTAACCTT 58.344 39.130 17.75 0.00 0.00 3.50
1861 4434 4.292186 TGCATTTTCAGAGCTCTAACCT 57.708 40.909 17.75 0.00 0.00 3.50
1862 4435 5.105997 ACATTGCATTTTCAGAGCTCTAACC 60.106 40.000 17.75 3.39 0.00 2.85
1863 4436 5.947443 ACATTGCATTTTCAGAGCTCTAAC 58.053 37.500 17.75 1.59 0.00 2.34
1864 4437 6.579666 AACATTGCATTTTCAGAGCTCTAA 57.420 33.333 17.75 8.00 0.00 2.10
1865 4438 5.163824 CGAACATTGCATTTTCAGAGCTCTA 60.164 40.000 17.75 0.04 0.00 2.43
1866 4439 4.379186 CGAACATTGCATTTTCAGAGCTCT 60.379 41.667 11.45 11.45 0.00 4.09
1867 4440 3.850273 CGAACATTGCATTTTCAGAGCTC 59.150 43.478 5.27 5.27 0.00 4.09
1868 4441 3.829948 CGAACATTGCATTTTCAGAGCT 58.170 40.909 0.00 0.00 0.00 4.09
1869 4442 2.343544 GCGAACATTGCATTTTCAGAGC 59.656 45.455 0.00 0.00 0.00 4.09
1870 4443 3.606777 CAGCGAACATTGCATTTTCAGAG 59.393 43.478 0.00 0.00 33.85 3.35
1871 4444 3.004629 ACAGCGAACATTGCATTTTCAGA 59.995 39.130 0.00 0.00 33.85 3.27
1872 4445 3.120616 CACAGCGAACATTGCATTTTCAG 59.879 43.478 0.00 0.00 33.85 3.02
1873 4446 3.051327 CACAGCGAACATTGCATTTTCA 58.949 40.909 0.00 0.00 33.85 2.69
1874 4447 2.409378 CCACAGCGAACATTGCATTTTC 59.591 45.455 0.00 0.00 33.85 2.29
1875 4448 2.406130 CCACAGCGAACATTGCATTTT 58.594 42.857 0.00 0.00 33.85 1.82
1876 4449 1.936203 GCCACAGCGAACATTGCATTT 60.936 47.619 0.00 0.00 33.85 2.32
1877 4450 0.388907 GCCACAGCGAACATTGCATT 60.389 50.000 0.00 0.00 33.85 3.56
1878 4451 1.213537 GCCACAGCGAACATTGCAT 59.786 52.632 0.00 0.00 33.85 3.96
1879 4452 2.644418 GCCACAGCGAACATTGCA 59.356 55.556 0.00 0.00 33.85 4.08
1880 4453 2.126346 GGCCACAGCGAACATTGC 60.126 61.111 0.00 0.00 41.24 3.56
1881 4454 2.176546 CGGCCACAGCGAACATTG 59.823 61.111 2.24 0.00 41.24 2.82
1882 4455 2.031919 TCGGCCACAGCGAACATT 59.968 55.556 2.24 0.00 41.24 2.71
1883 4456 2.742372 GTCGGCCACAGCGAACAT 60.742 61.111 2.24 0.00 41.24 2.71
1886 4459 4.717629 CTCGTCGGCCACAGCGAA 62.718 66.667 2.24 0.00 41.24 4.70
1897 4470 4.406173 ACAGTCTGCGCCTCGTCG 62.406 66.667 4.18 0.00 0.00 5.12
1898 4471 2.807045 CACAGTCTGCGCCTCGTC 60.807 66.667 4.18 0.00 0.00 4.20
1899 4472 4.363990 CCACAGTCTGCGCCTCGT 62.364 66.667 4.18 0.00 0.00 4.18
1901 4474 4.008933 ACCCACAGTCTGCGCCTC 62.009 66.667 4.18 0.00 0.00 4.70
1902 4475 4.320456 CACCCACAGTCTGCGCCT 62.320 66.667 4.18 0.00 0.00 5.52
1903 4476 4.314440 TCACCCACAGTCTGCGCC 62.314 66.667 4.18 0.00 0.00 6.53
1904 4477 2.740055 CTCACCCACAGTCTGCGC 60.740 66.667 0.00 0.00 0.00 6.09
1905 4478 1.665916 CACTCACCCACAGTCTGCG 60.666 63.158 0.00 0.00 0.00 5.18
1906 4479 1.302033 CCACTCACCCACAGTCTGC 60.302 63.158 0.00 0.00 0.00 4.26
1907 4480 0.250038 CACCACTCACCCACAGTCTG 60.250 60.000 0.00 0.00 0.00 3.51
1908 4481 1.410850 CCACCACTCACCCACAGTCT 61.411 60.000 0.00 0.00 0.00 3.24
1909 4482 1.071471 CCACCACTCACCCACAGTC 59.929 63.158 0.00 0.00 0.00 3.51
1910 4483 2.452064 CCCACCACTCACCCACAGT 61.452 63.158 0.00 0.00 0.00 3.55
1911 4484 2.116983 CTCCCACCACTCACCCACAG 62.117 65.000 0.00 0.00 0.00 3.66
1912 4485 2.040359 TCCCACCACTCACCCACA 60.040 61.111 0.00 0.00 0.00 4.17
1913 4486 1.831652 CTCTCCCACCACTCACCCAC 61.832 65.000 0.00 0.00 0.00 4.61
1914 4487 1.536418 CTCTCCCACCACTCACCCA 60.536 63.158 0.00 0.00 0.00 4.51
1915 4488 2.294078 CCTCTCCCACCACTCACCC 61.294 68.421 0.00 0.00 0.00 4.61
1916 4489 2.960688 GCCTCTCCCACCACTCACC 61.961 68.421 0.00 0.00 0.00 4.02
1917 4490 1.893919 GAGCCTCTCCCACCACTCAC 61.894 65.000 0.00 0.00 0.00 3.51
1918 4491 1.610673 GAGCCTCTCCCACCACTCA 60.611 63.158 0.00 0.00 0.00 3.41
1919 4492 1.305718 AGAGCCTCTCCCACCACTC 60.306 63.158 0.00 0.00 0.00 3.51
1920 4493 1.611851 CAGAGCCTCTCCCACCACT 60.612 63.158 0.00 0.00 0.00 4.00
1921 4494 2.985456 CAGAGCCTCTCCCACCAC 59.015 66.667 0.00 0.00 0.00 4.16
1922 4495 3.005539 GCAGAGCCTCTCCCACCA 61.006 66.667 0.00 0.00 0.00 4.17
1923 4496 2.686835 AGCAGAGCCTCTCCCACC 60.687 66.667 0.00 0.00 0.00 4.61
1924 4497 2.730524 GGAGCAGAGCCTCTCCCAC 61.731 68.421 0.00 0.00 42.30 4.61
1925 4498 2.364842 GGAGCAGAGCCTCTCCCA 60.365 66.667 0.00 0.00 42.30 4.37
1926 4499 3.535962 CGGAGCAGAGCCTCTCCC 61.536 72.222 0.00 0.00 44.61 4.30
1943 4516 4.951963 CTCCTTCGATCCGCCGGC 62.952 72.222 19.07 19.07 0.00 6.13
1944 4517 4.951963 GCTCCTTCGATCCGCCGG 62.952 72.222 0.00 0.00 0.00 6.13
1945 4518 3.716539 TTGCTCCTTCGATCCGCCG 62.717 63.158 0.00 0.00 0.00 6.46
1946 4519 1.024579 TTTTGCTCCTTCGATCCGCC 61.025 55.000 0.00 0.00 0.00 6.13
1947 4520 0.097150 GTTTTGCTCCTTCGATCCGC 59.903 55.000 0.00 0.00 0.00 5.54
1948 4521 1.394917 CTGTTTTGCTCCTTCGATCCG 59.605 52.381 0.00 0.00 0.00 4.18
1949 4522 1.740025 CCTGTTTTGCTCCTTCGATCC 59.260 52.381 0.00 0.00 0.00 3.36
1950 4523 2.427506 ACCTGTTTTGCTCCTTCGATC 58.572 47.619 0.00 0.00 0.00 3.69
1951 4524 2.554032 CAACCTGTTTTGCTCCTTCGAT 59.446 45.455 0.00 0.00 0.00 3.59
1952 4525 1.946768 CAACCTGTTTTGCTCCTTCGA 59.053 47.619 0.00 0.00 0.00 3.71
1953 4526 1.946768 TCAACCTGTTTTGCTCCTTCG 59.053 47.619 0.00 0.00 0.00 3.79
1954 4527 4.590850 ATTCAACCTGTTTTGCTCCTTC 57.409 40.909 0.00 0.00 0.00 3.46
1955 4528 5.774690 TCATATTCAACCTGTTTTGCTCCTT 59.225 36.000 0.00 0.00 0.00 3.36
1956 4529 5.183904 GTCATATTCAACCTGTTTTGCTCCT 59.816 40.000 0.00 0.00 0.00 3.69
1957 4530 5.402398 GTCATATTCAACCTGTTTTGCTCC 58.598 41.667 0.00 0.00 0.00 4.70
1958 4531 5.402398 GGTCATATTCAACCTGTTTTGCTC 58.598 41.667 0.00 0.00 32.54 4.26
1959 4532 4.082787 CGGTCATATTCAACCTGTTTTGCT 60.083 41.667 0.00 0.00 33.14 3.91
1960 4533 4.165779 CGGTCATATTCAACCTGTTTTGC 58.834 43.478 0.00 0.00 33.14 3.68
1961 4534 5.153513 CACGGTCATATTCAACCTGTTTTG 58.846 41.667 0.00 0.00 33.14 2.44
1962 4535 4.217550 CCACGGTCATATTCAACCTGTTTT 59.782 41.667 0.00 0.00 33.14 2.43
1963 4536 3.756434 CCACGGTCATATTCAACCTGTTT 59.244 43.478 0.00 0.00 33.14 2.83
1964 4537 3.343617 CCACGGTCATATTCAACCTGTT 58.656 45.455 0.00 0.00 33.14 3.16
1965 4538 2.939640 GCCACGGTCATATTCAACCTGT 60.940 50.000 0.00 0.00 33.14 4.00
1966 4539 1.670811 GCCACGGTCATATTCAACCTG 59.329 52.381 0.00 0.00 33.14 4.00
1967 4540 1.280710 TGCCACGGTCATATTCAACCT 59.719 47.619 0.00 0.00 33.14 3.50
1968 4541 1.670811 CTGCCACGGTCATATTCAACC 59.329 52.381 0.00 0.00 0.00 3.77
1969 4542 1.064060 GCTGCCACGGTCATATTCAAC 59.936 52.381 0.00 0.00 0.00 3.18
1970 4543 1.378531 GCTGCCACGGTCATATTCAA 58.621 50.000 0.00 0.00 0.00 2.69
1971 4544 0.463654 GGCTGCCACGGTCATATTCA 60.464 55.000 15.17 0.00 0.00 2.57
1972 4545 0.179045 AGGCTGCCACGGTCATATTC 60.179 55.000 22.65 0.00 0.00 1.75
1973 4546 1.128200 TAGGCTGCCACGGTCATATT 58.872 50.000 22.65 0.00 0.00 1.28
1974 4547 0.393077 GTAGGCTGCCACGGTCATAT 59.607 55.000 22.65 0.00 0.00 1.78
1975 4548 0.973496 TGTAGGCTGCCACGGTCATA 60.973 55.000 22.65 0.00 0.00 2.15
1976 4549 2.290287 TGTAGGCTGCCACGGTCAT 61.290 57.895 22.65 0.00 0.00 3.06
1977 4550 2.920384 TGTAGGCTGCCACGGTCA 60.920 61.111 22.65 9.08 0.00 4.02
1978 4551 2.434359 GTGTAGGCTGCCACGGTC 60.434 66.667 22.65 6.55 0.00 4.79
1979 4552 2.923035 AGTGTAGGCTGCCACGGT 60.923 61.111 22.65 1.88 36.69 4.83
1980 4553 2.434884 CAGTGTAGGCTGCCACGG 60.435 66.667 22.65 7.42 36.69 4.94
1981 4554 2.029288 CACAGTGTAGGCTGCCACG 61.029 63.158 22.65 9.24 39.96 4.94
1982 4555 1.071471 ACACAGTGTAGGCTGCCAC 59.929 57.895 22.65 16.65 39.96 5.01
1983 4556 1.071299 CACACAGTGTAGGCTGCCA 59.929 57.895 22.65 3.92 39.96 4.92
1984 4557 1.672356 CCACACAGTGTAGGCTGCC 60.672 63.158 11.65 11.65 39.96 4.85
1985 4558 0.250295 TTCCACACAGTGTAGGCTGC 60.250 55.000 5.69 0.00 39.96 5.25
1986 4559 1.512926 GTTCCACACAGTGTAGGCTG 58.487 55.000 5.69 0.00 41.92 4.85
1987 4560 0.396811 GGTTCCACACAGTGTAGGCT 59.603 55.000 5.69 0.00 0.00 4.58
1988 4561 0.396811 AGGTTCCACACAGTGTAGGC 59.603 55.000 5.69 0.00 0.00 3.93
1989 4562 1.971357 AGAGGTTCCACACAGTGTAGG 59.029 52.381 5.69 10.51 0.00 3.18
1990 4563 2.289072 CCAGAGGTTCCACACAGTGTAG 60.289 54.545 5.69 0.00 0.00 2.74
1991 4564 1.691976 CCAGAGGTTCCACACAGTGTA 59.308 52.381 5.69 0.00 0.00 2.90
1992 4565 0.469917 CCAGAGGTTCCACACAGTGT 59.530 55.000 0.00 0.00 0.00 3.55
1993 4566 0.758734 TCCAGAGGTTCCACACAGTG 59.241 55.000 0.00 0.00 0.00 3.66
1994 4567 1.417890 CTTCCAGAGGTTCCACACAGT 59.582 52.381 0.00 0.00 0.00 3.55
1995 4568 1.271054 CCTTCCAGAGGTTCCACACAG 60.271 57.143 0.00 0.00 40.95 3.66
1996 4569 0.764890 CCTTCCAGAGGTTCCACACA 59.235 55.000 0.00 0.00 40.95 3.72
1997 4570 1.002544 CTCCTTCCAGAGGTTCCACAC 59.997 57.143 0.00 0.00 46.39 3.82
1998 4571 1.132849 TCTCCTTCCAGAGGTTCCACA 60.133 52.381 0.00 0.00 46.39 4.17
1999 4572 1.552792 CTCTCCTTCCAGAGGTTCCAC 59.447 57.143 0.00 0.00 46.39 4.02
2000 4573 1.433199 TCTCTCCTTCCAGAGGTTCCA 59.567 52.381 0.00 0.00 46.39 3.53
2001 4574 2.239681 TCTCTCCTTCCAGAGGTTCC 57.760 55.000 0.00 0.00 46.39 3.62
2002 4575 4.223923 TGATTTCTCTCCTTCCAGAGGTTC 59.776 45.833 0.00 0.00 46.39 3.62
2003 4576 4.171234 TGATTTCTCTCCTTCCAGAGGTT 58.829 43.478 0.00 0.00 46.39 3.50
2004 4577 3.796111 TGATTTCTCTCCTTCCAGAGGT 58.204 45.455 0.00 0.00 46.39 3.85
2006 4579 4.081972 TCGTTGATTTCTCTCCTTCCAGAG 60.082 45.833 0.00 0.00 41.35 3.35
2007 4580 3.832490 TCGTTGATTTCTCTCCTTCCAGA 59.168 43.478 0.00 0.00 0.00 3.86
2008 4581 4.180057 CTCGTTGATTTCTCTCCTTCCAG 58.820 47.826 0.00 0.00 0.00 3.86
2009 4582 3.578716 ACTCGTTGATTTCTCTCCTTCCA 59.421 43.478 0.00 0.00 0.00 3.53
2010 4583 4.195225 ACTCGTTGATTTCTCTCCTTCC 57.805 45.455 0.00 0.00 0.00 3.46
2011 4584 6.197468 CGAATACTCGTTGATTTCTCTCCTTC 59.803 42.308 0.00 0.00 40.33 3.46
2012 4585 6.037098 CGAATACTCGTTGATTTCTCTCCTT 58.963 40.000 0.00 0.00 40.33 3.36
2013 4586 5.357314 TCGAATACTCGTTGATTTCTCTCCT 59.643 40.000 0.00 0.00 45.62 3.69
2014 4587 5.579718 TCGAATACTCGTTGATTTCTCTCC 58.420 41.667 0.00 0.00 45.62 3.71
2015 4588 6.487960 TCTCGAATACTCGTTGATTTCTCTC 58.512 40.000 0.00 0.00 45.62 3.20
2016 4589 6.438259 TCTCGAATACTCGTTGATTTCTCT 57.562 37.500 0.00 0.00 45.62 3.10
2017 4590 7.687005 ATTCTCGAATACTCGTTGATTTCTC 57.313 36.000 0.00 0.00 45.62 2.87
2018 4591 9.582431 TTTATTCTCGAATACTCGTTGATTTCT 57.418 29.630 0.00 0.00 45.62 2.52
2019 4592 9.836739 CTTTATTCTCGAATACTCGTTGATTTC 57.163 33.333 0.00 0.00 45.62 2.17
2020 4593 9.582431 TCTTTATTCTCGAATACTCGTTGATTT 57.418 29.630 0.00 0.00 45.62 2.17
2021 4594 9.239002 CTCTTTATTCTCGAATACTCGTTGATT 57.761 33.333 0.00 0.00 45.62 2.57
2022 4595 7.380065 GCTCTTTATTCTCGAATACTCGTTGAT 59.620 37.037 0.00 0.00 45.62 2.57
2023 4596 6.691818 GCTCTTTATTCTCGAATACTCGTTGA 59.308 38.462 0.00 0.00 45.62 3.18
2024 4597 6.693545 AGCTCTTTATTCTCGAATACTCGTTG 59.306 38.462 0.00 0.00 45.62 4.10
2025 4598 6.693545 CAGCTCTTTATTCTCGAATACTCGTT 59.306 38.462 0.00 0.00 45.62 3.85
2026 4599 6.038382 TCAGCTCTTTATTCTCGAATACTCGT 59.962 38.462 0.00 0.00 45.62 4.18
2027 4600 6.358558 GTCAGCTCTTTATTCTCGAATACTCG 59.641 42.308 0.00 0.00 46.87 4.18
2028 4601 7.378461 CAGTCAGCTCTTTATTCTCGAATACTC 59.622 40.741 0.00 0.00 33.40 2.59
2029 4602 7.199766 CAGTCAGCTCTTTATTCTCGAATACT 58.800 38.462 0.00 0.00 33.40 2.12
2030 4603 6.074569 GCAGTCAGCTCTTTATTCTCGAATAC 60.075 42.308 0.00 0.00 41.15 1.89
2031 4604 5.980116 GCAGTCAGCTCTTTATTCTCGAATA 59.020 40.000 0.00 0.00 41.15 1.75
2032 4605 4.808364 GCAGTCAGCTCTTTATTCTCGAAT 59.192 41.667 0.00 0.00 41.15 3.34
2033 4606 4.177026 GCAGTCAGCTCTTTATTCTCGAA 58.823 43.478 0.00 0.00 41.15 3.71
2034 4607 3.775202 GCAGTCAGCTCTTTATTCTCGA 58.225 45.455 0.00 0.00 41.15 4.04
2045 4618 5.632025 GCTAGAGCAGTAGCAGTCAGCTC 62.632 56.522 11.42 0.00 46.14 4.09
2047 4620 1.535860 GCTAGAGCAGTAGCAGTCAGC 60.536 57.143 11.42 0.00 44.26 4.26
2048 4621 2.023673 AGCTAGAGCAGTAGCAGTCAG 58.976 52.381 16.98 0.00 46.81 3.51
2049 4622 1.747924 CAGCTAGAGCAGTAGCAGTCA 59.252 52.381 16.98 0.00 46.81 3.41
2050 4623 1.066908 CCAGCTAGAGCAGTAGCAGTC 59.933 57.143 16.98 0.00 46.81 3.51
2051 4624 1.110442 CCAGCTAGAGCAGTAGCAGT 58.890 55.000 16.98 0.00 46.81 4.40
2052 4625 0.388659 CCCAGCTAGAGCAGTAGCAG 59.611 60.000 16.98 10.38 46.81 4.24
2053 4626 1.680522 GCCCAGCTAGAGCAGTAGCA 61.681 60.000 16.98 0.00 46.81 3.49
2054 4627 1.068921 GCCCAGCTAGAGCAGTAGC 59.931 63.158 8.87 8.87 45.06 3.58
2055 4628 0.673437 GAGCCCAGCTAGAGCAGTAG 59.327 60.000 4.01 0.00 45.16 2.57
2056 4629 0.033109 TGAGCCCAGCTAGAGCAGTA 60.033 55.000 4.01 0.00 45.16 2.74
2057 4630 0.690411 ATGAGCCCAGCTAGAGCAGT 60.690 55.000 4.01 0.00 45.16 4.40
2058 4631 0.033781 GATGAGCCCAGCTAGAGCAG 59.966 60.000 4.01 0.00 45.16 4.24
2059 4632 0.688749 TGATGAGCCCAGCTAGAGCA 60.689 55.000 4.01 0.00 45.16 4.26
2060 4633 0.467384 TTGATGAGCCCAGCTAGAGC 59.533 55.000 0.00 0.00 39.88 4.09
2061 4634 1.070445 CCTTGATGAGCCCAGCTAGAG 59.930 57.143 0.00 0.00 39.88 2.43
2062 4635 1.126488 CCTTGATGAGCCCAGCTAGA 58.874 55.000 0.00 0.00 39.88 2.43
2063 4636 1.126488 TCCTTGATGAGCCCAGCTAG 58.874 55.000 0.00 0.00 39.88 3.42
2064 4637 1.419012 CATCCTTGATGAGCCCAGCTA 59.581 52.381 0.00 0.00 42.09 3.32
2065 4638 0.183014 CATCCTTGATGAGCCCAGCT 59.817 55.000 0.00 0.00 42.09 4.24
2066 4639 0.182061 TCATCCTTGATGAGCCCAGC 59.818 55.000 2.73 0.00 43.11 4.85
2073 4646 3.943381 GCACTTGATGTCATCCTTGATGA 59.057 43.478 10.36 2.73 45.35 2.92
2074 4647 3.945921 AGCACTTGATGTCATCCTTGATG 59.054 43.478 10.36 0.00 41.00 3.07
2075 4648 4.232188 AGCACTTGATGTCATCCTTGAT 57.768 40.909 10.36 0.93 33.56 2.57
2076 4649 3.708403 AGCACTTGATGTCATCCTTGA 57.292 42.857 10.36 0.00 0.00 3.02
2077 4650 4.482386 CAAAGCACTTGATGTCATCCTTG 58.518 43.478 10.36 5.84 37.17 3.61
2078 4651 3.508793 CCAAAGCACTTGATGTCATCCTT 59.491 43.478 10.36 3.30 37.17 3.36
2079 4652 3.087031 CCAAAGCACTTGATGTCATCCT 58.913 45.455 10.36 0.00 37.17 3.24
2080 4653 2.165030 CCCAAAGCACTTGATGTCATCC 59.835 50.000 10.36 0.00 37.17 3.51
2081 4654 2.165030 CCCCAAAGCACTTGATGTCATC 59.835 50.000 5.83 5.83 37.17 2.92
2082 4655 2.173519 CCCCAAAGCACTTGATGTCAT 58.826 47.619 0.38 0.00 37.17 3.06
2083 4656 1.144708 TCCCCAAAGCACTTGATGTCA 59.855 47.619 0.38 0.00 37.17 3.58
2084 4657 1.815003 CTCCCCAAAGCACTTGATGTC 59.185 52.381 0.38 0.00 37.17 3.06
2085 4658 1.548582 CCTCCCCAAAGCACTTGATGT 60.549 52.381 0.38 0.00 37.17 3.06
2086 4659 1.180029 CCTCCCCAAAGCACTTGATG 58.820 55.000 0.38 0.00 37.17 3.07
2087 4660 0.613012 GCCTCCCCAAAGCACTTGAT 60.613 55.000 0.38 0.00 37.17 2.57
2088 4661 1.228552 GCCTCCCCAAAGCACTTGA 60.229 57.895 0.38 0.00 37.17 3.02
2089 4662 1.114722 TTGCCTCCCCAAAGCACTTG 61.115 55.000 0.00 0.00 35.96 3.16
2090 4663 1.115326 GTTGCCTCCCCAAAGCACTT 61.115 55.000 0.00 0.00 35.96 3.16
2091 4664 1.531602 GTTGCCTCCCCAAAGCACT 60.532 57.895 0.00 0.00 35.96 4.40
2092 4665 0.251165 TAGTTGCCTCCCCAAAGCAC 60.251 55.000 0.00 0.00 35.96 4.40
2093 4666 0.038166 CTAGTTGCCTCCCCAAAGCA 59.962 55.000 0.00 0.00 33.97 3.91
2094 4667 0.328258 TCTAGTTGCCTCCCCAAAGC 59.672 55.000 0.00 0.00 0.00 3.51
2095 4668 1.065126 CCTCTAGTTGCCTCCCCAAAG 60.065 57.143 0.00 0.00 0.00 2.77
2096 4669 0.991920 CCTCTAGTTGCCTCCCCAAA 59.008 55.000 0.00 0.00 0.00 3.28
2097 4670 0.914417 CCCTCTAGTTGCCTCCCCAA 60.914 60.000 0.00 0.00 0.00 4.12
2098 4671 1.306997 CCCTCTAGTTGCCTCCCCA 60.307 63.158 0.00 0.00 0.00 4.96
2099 4672 0.400670 ATCCCTCTAGTTGCCTCCCC 60.401 60.000 0.00 0.00 0.00 4.81
2100 4673 1.418264 GAATCCCTCTAGTTGCCTCCC 59.582 57.143 0.00 0.00 0.00 4.30
2101 4674 1.418264 GGAATCCCTCTAGTTGCCTCC 59.582 57.143 0.00 0.00 0.00 4.30
2102 4675 1.418264 GGGAATCCCTCTAGTTGCCTC 59.582 57.143 11.95 0.00 41.34 4.70
2103 4676 1.512735 GGGAATCCCTCTAGTTGCCT 58.487 55.000 11.95 0.00 41.34 4.75
2121 4694 4.794278 AAAAATTACGGCCCTACAAAGG 57.206 40.909 0.00 0.00 43.25 3.11
2139 4712 5.054477 CGTGAGGTTTAGGAGACAGAAAAA 58.946 41.667 0.00 0.00 0.00 1.94
2140 4713 4.100498 ACGTGAGGTTTAGGAGACAGAAAA 59.900 41.667 0.00 0.00 0.00 2.29
2141 4714 3.640029 ACGTGAGGTTTAGGAGACAGAAA 59.360 43.478 0.00 0.00 0.00 2.52
2142 4715 3.228453 ACGTGAGGTTTAGGAGACAGAA 58.772 45.455 0.00 0.00 0.00 3.02
2143 4716 2.872732 ACGTGAGGTTTAGGAGACAGA 58.127 47.619 0.00 0.00 0.00 3.41
2144 4717 3.243771 ACAACGTGAGGTTTAGGAGACAG 60.244 47.826 0.00 0.00 36.49 3.51
2145 4718 2.696707 ACAACGTGAGGTTTAGGAGACA 59.303 45.455 0.00 0.00 36.49 3.41
2146 4719 3.382048 ACAACGTGAGGTTTAGGAGAC 57.618 47.619 0.00 0.00 36.49 3.36
2147 4720 5.011329 ACATTACAACGTGAGGTTTAGGAGA 59.989 40.000 0.00 0.00 36.49 3.71
2148 4721 5.120208 CACATTACAACGTGAGGTTTAGGAG 59.880 44.000 0.00 0.00 36.49 3.69
2149 4722 4.992319 CACATTACAACGTGAGGTTTAGGA 59.008 41.667 0.00 0.00 36.49 2.94
2150 4723 4.153475 CCACATTACAACGTGAGGTTTAGG 59.847 45.833 0.00 0.00 36.49 2.69
2151 4724 4.153475 CCCACATTACAACGTGAGGTTTAG 59.847 45.833 0.00 0.00 36.49 1.85
2152 4725 4.066490 CCCACATTACAACGTGAGGTTTA 58.934 43.478 0.00 0.00 36.49 2.01
2153 4726 2.882137 CCCACATTACAACGTGAGGTTT 59.118 45.455 0.00 0.00 36.49 3.27
2154 4727 2.105134 TCCCACATTACAACGTGAGGTT 59.895 45.455 0.00 0.00 40.22 3.50
2155 4728 1.695242 TCCCACATTACAACGTGAGGT 59.305 47.619 0.00 0.00 35.02 3.85
2156 4729 2.465860 TCCCACATTACAACGTGAGG 57.534 50.000 0.00 0.00 35.02 3.86
2157 4730 2.095853 GCATCCCACATTACAACGTGAG 59.904 50.000 0.00 0.00 35.02 3.51
2158 4731 2.080693 GCATCCCACATTACAACGTGA 58.919 47.619 0.00 0.00 35.02 4.35
2159 4732 1.202020 CGCATCCCACATTACAACGTG 60.202 52.381 0.00 0.00 0.00 4.49
2160 4733 1.083489 CGCATCCCACATTACAACGT 58.917 50.000 0.00 0.00 0.00 3.99
2161 4734 1.062002 GTCGCATCCCACATTACAACG 59.938 52.381 0.00 0.00 0.00 4.10
2162 4735 1.400494 GGTCGCATCCCACATTACAAC 59.600 52.381 0.00 0.00 0.00 3.32
2163 4736 1.280710 AGGTCGCATCCCACATTACAA 59.719 47.619 0.00 0.00 0.00 2.41
2164 4737 0.908910 AGGTCGCATCCCACATTACA 59.091 50.000 0.00 0.00 0.00 2.41
2165 4738 1.583054 GAGGTCGCATCCCACATTAC 58.417 55.000 0.00 0.00 0.00 1.89
2166 4739 0.468226 GGAGGTCGCATCCCACATTA 59.532 55.000 0.00 0.00 0.00 1.90
2167 4740 1.224592 GGAGGTCGCATCCCACATT 59.775 57.895 0.00 0.00 0.00 2.71
2168 4741 1.690219 GAGGAGGTCGCATCCCACAT 61.690 60.000 6.87 0.00 37.57 3.21
2169 4742 2.284625 AGGAGGTCGCATCCCACA 60.285 61.111 6.87 0.00 37.57 4.17
2170 4743 2.022240 GAGAGGAGGTCGCATCCCAC 62.022 65.000 6.87 3.17 37.57 4.61
2171 4744 1.758514 GAGAGGAGGTCGCATCCCA 60.759 63.158 6.87 0.00 37.57 4.37
2172 4745 2.851071 CGAGAGGAGGTCGCATCCC 61.851 68.421 6.87 0.63 37.57 3.85
2173 4746 1.668101 AACGAGAGGAGGTCGCATCC 61.668 60.000 2.86 2.86 41.26 3.51
2174 4747 0.526524 CAACGAGAGGAGGTCGCATC 60.527 60.000 0.00 0.00 41.26 3.91
2175 4748 1.513158 CAACGAGAGGAGGTCGCAT 59.487 57.895 0.00 0.00 41.26 4.73
2176 4749 2.636412 CCAACGAGAGGAGGTCGCA 61.636 63.158 0.00 0.00 41.26 5.10
2177 4750 2.182030 CCAACGAGAGGAGGTCGC 59.818 66.667 0.00 0.00 41.26 5.19
2178 4751 1.507174 GACCAACGAGAGGAGGTCG 59.493 63.158 0.00 0.00 44.93 4.79
2180 4753 0.252284 ATGGACCAACGAGAGGAGGT 60.252 55.000 0.00 0.00 43.62 3.85
2181 4754 0.461961 GATGGACCAACGAGAGGAGG 59.538 60.000 0.00 0.00 35.57 4.30
2182 4755 0.461961 GGATGGACCAACGAGAGGAG 59.538 60.000 0.00 0.00 38.79 3.69
2183 4756 1.320344 CGGATGGACCAACGAGAGGA 61.320 60.000 14.73 0.00 38.90 3.71
2184 4757 1.141881 CGGATGGACCAACGAGAGG 59.858 63.158 14.73 0.00 38.90 3.69
2185 4758 0.246635 AACGGATGGACCAACGAGAG 59.753 55.000 23.62 6.34 38.90 3.20
2186 4759 0.682852 AAACGGATGGACCAACGAGA 59.317 50.000 23.62 0.00 38.90 4.04
2187 4760 1.076332 GAAACGGATGGACCAACGAG 58.924 55.000 23.62 10.65 38.90 4.18
2188 4761 0.682852 AGAAACGGATGGACCAACGA 59.317 50.000 23.62 0.00 38.90 3.85
2189 4762 0.796312 CAGAAACGGATGGACCAACG 59.204 55.000 17.38 17.38 38.90 4.10
2190 4763 1.892209 ACAGAAACGGATGGACCAAC 58.108 50.000 0.00 0.00 38.90 3.77
2191 4764 3.008594 ACATACAGAAACGGATGGACCAA 59.991 43.478 0.00 0.00 38.90 3.67
2192 4765 2.569853 ACATACAGAAACGGATGGACCA 59.430 45.455 0.00 0.00 38.90 4.02
2193 4766 3.118738 AGACATACAGAAACGGATGGACC 60.119 47.826 0.00 0.00 0.00 4.46
2194 4767 4.124851 AGACATACAGAAACGGATGGAC 57.875 45.455 0.00 0.00 0.00 4.02
2195 4768 4.466370 AGAAGACATACAGAAACGGATGGA 59.534 41.667 0.00 0.00 0.00 3.41
2196 4769 4.759782 AGAAGACATACAGAAACGGATGG 58.240 43.478 0.00 0.00 0.00 3.51
2197 4770 5.655488 AGAGAAGACATACAGAAACGGATG 58.345 41.667 0.00 0.00 0.00 3.51
2198 4771 5.923733 AGAGAAGACATACAGAAACGGAT 57.076 39.130 0.00 0.00 0.00 4.18
2199 4772 5.477291 AGAAGAGAAGACATACAGAAACGGA 59.523 40.000 0.00 0.00 0.00 4.69
2200 4773 5.715070 AGAAGAGAAGACATACAGAAACGG 58.285 41.667 0.00 0.00 0.00 4.44
2204 4777 9.973450 GCATTATAGAAGAGAAGACATACAGAA 57.027 33.333 0.00 0.00 0.00 3.02
2205 4778 9.136323 TGCATTATAGAAGAGAAGACATACAGA 57.864 33.333 0.00 0.00 0.00 3.41
2206 4779 9.755804 TTGCATTATAGAAGAGAAGACATACAG 57.244 33.333 0.00 0.00 0.00 2.74
2209 4782 9.770097 CCTTTGCATTATAGAAGAGAAGACATA 57.230 33.333 0.00 0.00 0.00 2.29
2210 4783 7.228308 GCCTTTGCATTATAGAAGAGAAGACAT 59.772 37.037 0.00 0.00 37.47 3.06
2211 4784 6.540189 GCCTTTGCATTATAGAAGAGAAGACA 59.460 38.462 0.00 0.00 37.47 3.41
2212 4785 6.540189 TGCCTTTGCATTATAGAAGAGAAGAC 59.460 38.462 0.00 0.00 44.23 3.01
2213 4786 6.653020 TGCCTTTGCATTATAGAAGAGAAGA 58.347 36.000 0.00 0.00 44.23 2.87
2214 4787 6.932356 TGCCTTTGCATTATAGAAGAGAAG 57.068 37.500 0.00 0.00 44.23 2.85
2229 4802 3.588336 CAGGAGCTCTGCCTTTGC 58.412 61.111 14.64 0.00 36.60 3.68
2240 4813 0.178068 TTGACGGGAATAGCAGGAGC 59.822 55.000 0.00 0.00 42.56 4.70
2241 4814 2.691409 TTTGACGGGAATAGCAGGAG 57.309 50.000 0.00 0.00 0.00 3.69
2242 4815 3.426787 TTTTTGACGGGAATAGCAGGA 57.573 42.857 0.00 0.00 0.00 3.86
2355 4931 5.263968 TCTCTTTAGTCGAATAAGGGCTG 57.736 43.478 13.72 6.11 0.00 4.85
2383 4960 7.568349 ACTTTTCCAGCTTGATGATATCAGTA 58.432 34.615 11.78 0.00 40.94 2.74
2442 5019 8.593492 AACTGGAAAATTTCAGCATCTTTAAC 57.407 30.769 8.09 0.00 34.57 2.01
2473 5050 9.214957 TGACTAACAAAATGAAGTACCTACATG 57.785 33.333 0.00 0.00 0.00 3.21
2541 5119 3.188159 TGTTTCGAGCCTTGTAACAGT 57.812 42.857 0.40 0.00 0.00 3.55
2705 5368 9.642327 GGTTAAAACCTTGTTTCTTCTAAAACA 57.358 29.630 4.58 0.00 45.75 2.83
2743 5408 7.541783 CGAATTGCAATCACATCTCCTTTTAAA 59.458 33.333 13.38 0.00 0.00 1.52
3103 6250 7.775053 AAAGAATCCCTAGCATGTTTAAACA 57.225 32.000 22.58 22.58 44.06 2.83
3107 6254 9.131791 GGAATAAAAGAATCCCTAGCATGTTTA 57.868 33.333 0.00 0.00 0.00 2.01
3108 6255 7.841222 AGGAATAAAAGAATCCCTAGCATGTTT 59.159 33.333 0.00 0.00 33.55 2.83
3109 6256 7.357471 AGGAATAAAAGAATCCCTAGCATGTT 58.643 34.615 0.00 0.00 33.55 2.71
3110 6257 6.915786 AGGAATAAAAGAATCCCTAGCATGT 58.084 36.000 0.00 0.00 33.55 3.21
3111 6258 7.830099 AAGGAATAAAAGAATCCCTAGCATG 57.170 36.000 0.00 0.00 33.55 4.06
3112 6259 8.926092 GTAAGGAATAAAAGAATCCCTAGCAT 57.074 34.615 0.00 0.00 33.55 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.