Multiple sequence alignment - TraesCS1A01G276800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G276800 chr1A 100.000 3735 0 0 1 3735 471727803 471731537 0.000000e+00 6898.0
1 TraesCS1A01G276800 chr1A 93.478 46 3 0 1 46 266173133 266173088 6.690000e-08 69.4
2 TraesCS1A01G276800 chr1B 94.209 1226 55 12 2096 3316 497274411 497275625 0.000000e+00 1857.0
3 TraesCS1A01G276800 chr1B 90.464 1185 79 15 838 2017 497273259 497274414 0.000000e+00 1531.0
4 TraesCS1A01G276800 chr1B 90.183 601 34 7 62 643 497272219 497272813 0.000000e+00 760.0
5 TraesCS1A01G276800 chr1B 93.237 207 9 5 628 833 497272828 497273030 2.180000e-77 300.0
6 TraesCS1A01G276800 chr1B 84.259 108 16 1 1994 2100 603534739 603534846 1.830000e-18 104.0
7 TraesCS1A01G276800 chr1B 92.754 69 5 0 3328 3396 497275960 497276028 2.370000e-17 100.0
8 TraesCS1A01G276800 chr1D 93.608 1236 51 11 2096 3316 372360440 372361662 0.000000e+00 1820.0
9 TraesCS1A01G276800 chr1D 92.166 868 56 4 838 1705 372359246 372360101 0.000000e+00 1216.0
10 TraesCS1A01G276800 chr1D 91.656 803 32 16 57 833 372358220 372359013 0.000000e+00 1079.0
11 TraesCS1A01G276800 chr1D 91.168 351 22 5 1670 2017 372360099 372360443 5.650000e-128 468.0
12 TraesCS1A01G276800 chr1D 93.333 45 3 0 1 45 205483168 205483212 2.410000e-07 67.6
13 TraesCS1A01G276800 chr3A 89.136 405 23 4 2249 2653 621893438 621893055 5.610000e-133 484.0
14 TraesCS1A01G276800 chr3A 83.908 87 8 5 3362 3444 722355927 722355843 1.110000e-10 78.7
15 TraesCS1A01G276800 chr3B 88.943 407 24 4 2247 2653 638357252 638356867 2.020000e-132 483.0
16 TraesCS1A01G276800 chr3B 90.909 55 4 1 3354 3408 741579415 741579468 5.170000e-09 73.1
17 TraesCS1A01G276800 chr3B 80.198 101 13 4 3362 3462 613804077 613803984 6.690000e-08 69.4
18 TraesCS1A01G276800 chr3D 88.206 407 27 4 2247 2653 478653364 478652979 2.030000e-127 466.0
19 TraesCS1A01G276800 chr3D 87.500 88 10 1 2014 2100 19116407 19116494 2.370000e-17 100.0
20 TraesCS1A01G276800 chr3D 93.333 45 3 0 1 45 555142355 555142399 2.410000e-07 67.6
21 TraesCS1A01G276800 chr5D 85.751 386 47 7 2248 2629 285839916 285839535 5.810000e-108 401.0
22 TraesCS1A01G276800 chr5D 85.859 99 12 2 3361 3458 346706698 346706795 1.830000e-18 104.0
23 TraesCS1A01G276800 chr5D 93.182 44 3 0 3360 3403 476613862 476613819 8.660000e-07 65.8
24 TraesCS1A01G276800 chr5A 85.714 385 49 6 2248 2629 378272191 378271810 5.810000e-108 401.0
25 TraesCS1A01G276800 chr5A 97.333 225 5 1 3486 3710 569458028 569457805 7.570000e-102 381.0
26 TraesCS1A01G276800 chr5B 85.455 385 48 8 2249 2629 324248816 324248436 9.720000e-106 394.0
27 TraesCS1A01G276800 chr5B 84.833 389 35 12 2235 2621 446996491 446996857 1.640000e-98 370.0
28 TraesCS1A01G276800 chr5B 85.000 100 11 4 2010 2106 582588147 582588245 8.540000e-17 99.0
29 TraesCS1A01G276800 chr5B 93.333 45 3 0 1 45 342871784 342871740 2.410000e-07 67.6
30 TraesCS1A01G276800 chr2B 97.380 229 5 1 3492 3719 730561391 730561163 4.520000e-104 388.0
31 TraesCS1A01G276800 chr2B 88.043 92 9 2 2009 2099 538631114 538631024 1.420000e-19 108.0
32 TraesCS1A01G276800 chr7B 97.768 224 5 0 3488 3711 669205523 669205300 1.630000e-103 387.0
33 TraesCS1A01G276800 chr7B 98.182 220 4 0 3492 3711 23409668 23409449 5.850000e-103 385.0
34 TraesCS1A01G276800 chr7B 96.943 229 7 0 3482 3710 659257103 659256875 5.850000e-103 385.0
35 TraesCS1A01G276800 chr7B 98.174 219 4 0 3492 3710 491109317 491109099 2.100000e-102 383.0
36 TraesCS1A01G276800 chr7B 95.349 43 2 0 3362 3404 732651627 732651669 6.690000e-08 69.4
37 TraesCS1A01G276800 chr6A 96.957 230 5 2 3486 3714 552834529 552834757 5.850000e-103 385.0
38 TraesCS1A01G276800 chr6A 93.333 75 4 1 2014 2087 600914024 600913950 3.940000e-20 110.0
39 TraesCS1A01G276800 chr6D 96.567 233 5 3 3486 3716 69960027 69960258 2.100000e-102 383.0
40 TraesCS1A01G276800 chr6D 85.437 103 12 3 2004 2104 78275771 78275872 1.830000e-18 104.0
41 TraesCS1A01G276800 chr6D 93.333 45 3 0 1 45 15817224 15817268 2.410000e-07 67.6
42 TraesCS1A01G276800 chr6D 93.333 45 3 0 1 45 430878350 430878306 2.410000e-07 67.6
43 TraesCS1A01G276800 chr2A 96.916 227 7 0 3484 3710 140579311 140579085 7.570000e-102 381.0
44 TraesCS1A01G276800 chr2A 90.123 81 6 2 2008 2087 206115196 206115117 1.830000e-18 104.0
45 TraesCS1A01G276800 chr4A 91.139 79 5 2 2010 2087 648759574 648759497 5.100000e-19 106.0
46 TraesCS1A01G276800 chr4A 85.047 107 11 5 2004 2108 659629620 659629723 1.830000e-18 104.0
47 TraesCS1A01G276800 chr6B 93.333 45 3 0 1 45 64197548 64197504 2.410000e-07 67.6
48 TraesCS1A01G276800 chr6B 90.196 51 5 0 3354 3404 609840089 609840139 2.410000e-07 67.6
49 TraesCS1A01G276800 chr4B 93.333 45 3 0 1 45 23359551 23359507 2.410000e-07 67.6
50 TraesCS1A01G276800 chr2D 93.333 45 3 0 1 45 633604278 633604322 2.410000e-07 67.6
51 TraesCS1A01G276800 chr7D 91.111 45 4 0 1 45 53265795 53265839 1.120000e-05 62.1
52 TraesCS1A01G276800 chr7D 100.000 32 0 0 14 45 212888676 212888707 4.030000e-05 60.2
53 TraesCS1A01G276800 chr7A 86.792 53 2 4 3358 3408 6795354 6795305 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G276800 chr1A 471727803 471731537 3734 False 6898.00 6898 100.0000 1 3735 1 chr1A.!!$F1 3734
1 TraesCS1A01G276800 chr1B 497272219 497276028 3809 False 909.60 1857 92.1694 62 3396 5 chr1B.!!$F2 3334
2 TraesCS1A01G276800 chr1D 372358220 372361662 3442 False 1145.75 1820 92.1495 57 3316 4 chr1D.!!$F2 3259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 1172 0.179081 GCTTGACATAGACGACCCCC 60.179 60.0 0.0 0.0 0.0 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2846 3213 0.46546 GTGTGTGCTCCTTGTTCCCA 60.465 55.0 0.0 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.827921 AGCCTAGCTCAATTTGTTTGGG 59.172 45.455 0.00 0.00 38.97 4.12
22 23 2.825532 GCCTAGCTCAATTTGTTTGGGA 59.174 45.455 0.00 0.00 38.12 4.37
23 24 3.367395 GCCTAGCTCAATTTGTTTGGGAC 60.367 47.826 0.00 0.00 38.12 4.46
24 25 3.826157 CCTAGCTCAATTTGTTTGGGACA 59.174 43.478 0.00 0.00 38.12 4.02
39 40 4.447138 TGGGACAAAAGGCTTAGAAGAA 57.553 40.909 0.00 0.00 31.92 2.52
40 41 4.398319 TGGGACAAAAGGCTTAGAAGAAG 58.602 43.478 0.00 0.00 31.92 2.85
41 42 4.104102 TGGGACAAAAGGCTTAGAAGAAGA 59.896 41.667 0.00 0.00 31.92 2.87
42 43 5.070685 GGGACAAAAGGCTTAGAAGAAGAA 58.929 41.667 0.00 0.00 0.00 2.52
43 44 5.182190 GGGACAAAAGGCTTAGAAGAAGAAG 59.818 44.000 0.00 0.00 0.00 2.85
44 45 5.998363 GGACAAAAGGCTTAGAAGAAGAAGA 59.002 40.000 0.00 0.00 0.00 2.87
45 46 6.657117 GGACAAAAGGCTTAGAAGAAGAAGAT 59.343 38.462 0.00 0.00 0.00 2.40
46 47 7.361628 GGACAAAAGGCTTAGAAGAAGAAGATG 60.362 40.741 0.00 0.00 0.00 2.90
47 48 7.001073 ACAAAAGGCTTAGAAGAAGAAGATGT 58.999 34.615 0.00 0.00 0.00 3.06
48 49 7.503902 ACAAAAGGCTTAGAAGAAGAAGATGTT 59.496 33.333 0.00 0.00 0.00 2.71
49 50 8.355913 CAAAAGGCTTAGAAGAAGAAGATGTTT 58.644 33.333 0.00 0.00 0.00 2.83
50 51 9.574516 AAAAGGCTTAGAAGAAGAAGATGTTTA 57.425 29.630 0.00 0.00 0.00 2.01
51 52 9.746457 AAAGGCTTAGAAGAAGAAGATGTTTAT 57.254 29.630 0.00 0.00 0.00 1.40
54 55 8.769891 GGCTTAGAAGAAGAAGATGTTTATAGC 58.230 37.037 0.00 0.00 0.00 2.97
55 56 8.484008 GCTTAGAAGAAGAAGATGTTTATAGCG 58.516 37.037 0.00 0.00 0.00 4.26
78 79 2.299013 TGACGACTCTACAATGGTTGCT 59.701 45.455 0.00 0.00 0.00 3.91
79 80 3.508402 TGACGACTCTACAATGGTTGCTA 59.492 43.478 0.00 0.00 0.00 3.49
80 85 3.846360 ACGACTCTACAATGGTTGCTAC 58.154 45.455 0.00 0.00 0.00 3.58
81 86 3.187700 CGACTCTACAATGGTTGCTACC 58.812 50.000 10.70 10.70 45.26 3.18
208 232 2.511879 CACAATCATCATGCACGTGTG 58.488 47.619 18.38 8.70 0.00 3.82
322 347 9.392259 TGATGGTGTAGAGTATATAATACTCCG 57.608 37.037 18.83 0.00 43.61 4.63
363 388 4.654262 TCCTAAACTCCCTGTCATATGACC 59.346 45.833 28.64 14.09 44.15 4.02
374 399 8.668653 TCCCTGTCATATGACCACATATTAATT 58.331 33.333 28.64 0.00 44.33 1.40
378 403 9.448438 TGTCATATGACCACATATTAATTAGCC 57.552 33.333 28.64 2.40 44.33 3.93
379 404 8.604035 GTCATATGACCACATATTAATTAGCCG 58.396 37.037 22.97 0.00 44.33 5.52
380 405 8.318412 TCATATGACCACATATTAATTAGCCGT 58.682 33.333 0.00 0.00 44.33 5.68
457 482 1.369625 CCAACAATCTGCCTACGTCC 58.630 55.000 0.00 0.00 0.00 4.79
493 518 4.025061 ACGTAGCTAGCTGTTCTACATACG 60.025 45.833 27.68 24.65 39.76 3.06
500 529 5.149054 AGCTGTTCTACATACGTACGTAC 57.851 43.478 28.99 17.83 33.01 3.67
575 604 3.825585 TCAGCATCACCAACAGCAAATTA 59.174 39.130 0.00 0.00 0.00 1.40
584 613 7.872881 TCACCAACAGCAAATTAAAATACGTA 58.127 30.769 0.00 0.00 0.00 3.57
600 629 6.441093 AATACGTACGTCAGGAAGTGATAA 57.559 37.500 26.53 2.21 37.56 1.75
615 644 9.760077 AGGAAGTGATAAAATAATACTGGTACG 57.240 33.333 0.00 0.00 0.00 3.67
616 645 8.985805 GGAAGTGATAAAATAATACTGGTACGG 58.014 37.037 0.00 0.00 42.99 4.02
702 768 1.674611 CCACGATCGATATTCGCCGC 61.675 60.000 24.34 0.00 40.21 6.53
764 831 0.886563 ATAGTATCTGTACCCGCCGC 59.113 55.000 0.00 0.00 0.00 6.53
833 905 1.159098 GCTGTCATGCTAGCTCCAGC 61.159 60.000 22.82 22.82 42.15 4.85
864 1172 0.179081 GCTTGACATAGACGACCCCC 60.179 60.000 0.00 0.00 0.00 5.40
901 1209 4.227583 AACCCAACCCAACCCCCG 62.228 66.667 0.00 0.00 0.00 5.73
919 1230 2.234300 CGGACACATATAAAGCCGGT 57.766 50.000 1.90 0.00 35.42 5.28
993 1308 1.153429 GTCCGGGGTCCAAATCGAG 60.153 63.158 0.00 0.00 0.00 4.04
1053 1368 2.879462 CTCGGCGTGCGGTACTTC 60.879 66.667 6.85 0.00 0.00 3.01
1131 1446 3.097137 CTCGTCGCCGTCGAGTGAT 62.097 63.158 22.26 0.00 46.46 3.06
1133 1448 1.800315 CGTCGCCGTCGAGTGATTT 60.800 57.895 0.00 0.00 46.46 2.17
1146 1461 3.140814 GATTTCCTGGTGCCCGGC 61.141 66.667 1.04 1.04 0.00 6.13
1147 1462 3.936772 GATTTCCTGGTGCCCGGCA 62.937 63.158 8.43 8.43 35.60 5.69
1157 1472 1.453745 TGCCCGGCAAAGATCATCC 60.454 57.895 10.50 0.00 34.76 3.51
1168 1483 3.657398 AAGATCATCCAAGCACCATGA 57.343 42.857 0.00 0.00 0.00 3.07
1260 1575 0.605589 AGACGAGCCCTGTCAAAGAG 59.394 55.000 0.00 0.00 38.83 2.85
1407 1722 0.917333 AGGAGGAGGAGGTCGAGACT 60.917 60.000 3.09 0.00 0.00 3.24
1408 1723 0.750182 GGAGGAGGAGGTCGAGACTG 60.750 65.000 3.09 0.00 0.00 3.51
1409 1724 0.253610 GAGGAGGAGGTCGAGACTGA 59.746 60.000 3.09 0.00 0.00 3.41
1410 1725 0.034863 AGGAGGAGGTCGAGACTGAC 60.035 60.000 3.09 0.00 38.17 3.51
1456 1771 0.671781 CGAGAGGTGCAAGGTGGAAG 60.672 60.000 0.00 0.00 0.00 3.46
1491 1806 3.466836 TGAACACAGTGAGATGTTGGTC 58.533 45.455 7.81 0.00 39.13 4.02
1514 1829 0.712979 TCAGTGGAGGGATCAGACCT 59.287 55.000 0.00 0.00 42.18 3.85
1515 1830 1.079490 TCAGTGGAGGGATCAGACCTT 59.921 52.381 0.00 0.00 38.79 3.50
1517 1832 0.543749 GTGGAGGGATCAGACCTTGG 59.456 60.000 0.00 0.00 38.79 3.61
1543 1858 3.780173 GCGGGGAAGAGAGCAGCT 61.780 66.667 0.00 0.00 0.00 4.24
1667 1982 0.392998 AACATGCAGGTGACCGATCC 60.393 55.000 4.03 0.00 0.00 3.36
1675 1990 3.860605 TGACCGATCCATGCCCCG 61.861 66.667 0.00 0.00 0.00 5.73
1705 2020 9.737427 TTTGTTTAATTTCGACTAAGATTTGCA 57.263 25.926 0.00 0.00 0.00 4.08
1710 2060 2.602878 TCGACTAAGATTTGCACCGAC 58.397 47.619 0.00 0.00 0.00 4.79
1722 2072 1.134220 TGCACCGACTCCAAGTTTTCT 60.134 47.619 0.00 0.00 0.00 2.52
1726 2076 3.433615 CACCGACTCCAAGTTTTCTGATC 59.566 47.826 0.00 0.00 0.00 2.92
1745 2095 9.610705 TTCTGATCCATCTTCTATTTTTCTCTG 57.389 33.333 0.00 0.00 0.00 3.35
1763 2113 5.667466 TCTCTGTTTCAAACGACCTAGTTT 58.333 37.500 0.00 0.00 44.27 2.66
1764 2114 6.808829 TCTCTGTTTCAAACGACCTAGTTTA 58.191 36.000 0.00 0.00 41.84 2.01
1775 2125 8.953990 CAAACGACCTAGTTTAGTTTTGAATTG 58.046 33.333 0.00 0.00 41.84 2.32
1819 2170 4.257731 TGCATAACGTTGGAGCTTAATGA 58.742 39.130 11.99 0.00 0.00 2.57
1851 2202 8.622948 ACTATTTTGGATAGTAAAGCATAGGC 57.377 34.615 0.00 0.00 35.17 3.93
1852 2203 6.901081 ATTTTGGATAGTAAAGCATAGGCC 57.099 37.500 0.00 0.00 42.56 5.19
1884 2235 3.773860 ATACTGCGAGTGAGACAAGAG 57.226 47.619 0.00 0.00 0.00 2.85
1901 2252 8.499403 AGACAAGAGTTATATTCCTTTTGCTC 57.501 34.615 5.16 0.00 0.00 4.26
1939 2290 1.859427 CGGCCTCATGCATGCATACC 61.859 60.000 31.73 25.97 43.89 2.73
1992 2344 0.467290 AAATATTCCATGCCGCCCGT 60.467 50.000 0.00 0.00 0.00 5.28
2112 2464 9.748708 CAAAGAAAGTACTTGAAATGGAAATGA 57.251 29.630 9.34 0.00 0.00 2.57
2133 2485 2.247699 ACTAGACCACCATAGCCACA 57.752 50.000 0.00 0.00 0.00 4.17
2241 2605 0.681733 ACTCGACTGACATGCTGGTT 59.318 50.000 0.00 0.00 0.00 3.67
2243 2607 0.969149 TCGACTGACATGCTGGTTCT 59.031 50.000 0.00 0.00 0.00 3.01
2443 2807 4.299547 TTCCGCACGCTGCAGACT 62.300 61.111 20.43 0.00 45.36 3.24
2587 2951 0.944386 GCTCCGACTTCAAGCACAAA 59.056 50.000 0.00 0.00 36.06 2.83
2698 3065 2.541120 GCGCAGGGAGCACATCATC 61.541 63.158 0.30 0.00 46.13 2.92
2708 3075 1.429148 GCACATCATCCGGTTCGACC 61.429 60.000 0.00 0.00 34.05 4.79
2709 3076 0.108377 CACATCATCCGGTTCGACCA 60.108 55.000 0.00 0.00 38.47 4.02
2710 3077 0.175760 ACATCATCCGGTTCGACCAG 59.824 55.000 0.00 0.00 38.47 4.00
2822 3189 3.244526 ACATGCGATTGGTATATGCTCCA 60.245 43.478 0.00 0.00 0.00 3.86
2829 3196 3.868757 TGGTATATGCTCCATAGACGC 57.131 47.619 4.51 0.00 38.83 5.19
2833 3200 2.983402 TATGCTCCATAGACGCGTAC 57.017 50.000 13.97 6.11 0.00 3.67
2928 3295 4.022762 CGTGTAGATGATAGCTAGGCTGTT 60.023 45.833 0.00 0.00 40.10 3.16
2951 3318 7.174946 TGTTAAGTAGCTGAATTTTCTTCTGGG 59.825 37.037 0.00 0.00 0.00 4.45
2967 3334 0.913934 TGGGGGAGCTGCAGATACAA 60.914 55.000 20.43 0.00 0.00 2.41
3025 3392 5.826737 CAGACCAATATTCTTCTGGCAGATT 59.173 40.000 19.50 5.43 33.25 2.40
3076 3447 7.766219 AGCTTGCATGATTTCAAATTGTATC 57.234 32.000 3.33 0.00 0.00 2.24
3107 3478 8.723942 AATGAGATGGACTATCAGTTGTTAAC 57.276 34.615 0.00 0.00 38.31 2.01
3108 3479 6.330278 TGAGATGGACTATCAGTTGTTAACG 58.670 40.000 0.26 0.00 38.31 3.18
3109 3480 6.071560 TGAGATGGACTATCAGTTGTTAACGT 60.072 38.462 0.26 0.00 38.31 3.99
3110 3481 6.331061 AGATGGACTATCAGTTGTTAACGTC 58.669 40.000 0.26 0.00 38.31 4.34
3111 3482 5.717078 TGGACTATCAGTTGTTAACGTCT 57.283 39.130 0.26 0.00 36.23 4.18
3112 3483 5.466819 TGGACTATCAGTTGTTAACGTCTG 58.533 41.667 17.93 17.93 36.23 3.51
3116 3490 2.734670 TCAGTTGTTAACGTCTGACCG 58.265 47.619 20.83 0.35 36.23 4.79
3123 3497 2.642139 TAACGTCTGACCGGTTGATC 57.358 50.000 9.42 0.00 0.00 2.92
3348 4045 6.966534 AGATGATGGATTTAAACATGTCCC 57.033 37.500 0.00 0.00 0.00 4.46
3352 4049 6.015918 TGATGGATTTAAACATGTCCCTGTT 58.984 36.000 0.00 0.00 41.01 3.16
3387 4084 7.134842 ACTCCCTCCAATCCAAATTAATTGAT 58.865 34.615 0.39 0.00 41.85 2.57
3391 4088 6.704493 CCTCCAATCCAAATTAATTGATGCAG 59.296 38.462 0.39 0.00 41.85 4.41
3396 4093 9.100554 CAATCCAAATTAATTGATGCAGCTTTA 57.899 29.630 2.53 0.00 41.85 1.85
3397 4094 9.669887 AATCCAAATTAATTGATGCAGCTTTAA 57.330 25.926 2.53 8.20 41.85 1.52
3398 4095 9.841295 ATCCAAATTAATTGATGCAGCTTTAAT 57.159 25.926 13.93 13.93 41.85 1.40
3404 4101 8.613613 TTAATTGATGCAGCTTTAATACAACG 57.386 30.769 2.53 0.00 0.00 4.10
3405 4102 5.621197 TTGATGCAGCTTTAATACAACGT 57.379 34.783 2.53 0.00 0.00 3.99
3406 4103 5.621197 TGATGCAGCTTTAATACAACGTT 57.379 34.783 2.53 0.00 0.00 3.99
3407 4104 6.729391 TGATGCAGCTTTAATACAACGTTA 57.271 33.333 2.53 0.00 0.00 3.18
3408 4105 7.315247 TGATGCAGCTTTAATACAACGTTAT 57.685 32.000 2.53 0.00 0.00 1.89
3409 4106 8.426881 TGATGCAGCTTTAATACAACGTTATA 57.573 30.769 2.53 0.00 0.00 0.98
3410 4107 8.332464 TGATGCAGCTTTAATACAACGTTATAC 58.668 33.333 2.53 0.00 0.00 1.47
3411 4108 7.837202 TGCAGCTTTAATACAACGTTATACT 57.163 32.000 0.00 0.00 0.00 2.12
3412 4109 8.929827 TGCAGCTTTAATACAACGTTATACTA 57.070 30.769 0.00 0.00 0.00 1.82
3413 4110 9.368674 TGCAGCTTTAATACAACGTTATACTAA 57.631 29.630 0.00 0.00 0.00 2.24
3433 4130 7.683437 ACTAAAATTGTACTAAAGCCCTGTC 57.317 36.000 0.00 0.00 0.00 3.51
3434 4131 7.228590 ACTAAAATTGTACTAAAGCCCTGTCA 58.771 34.615 0.00 0.00 0.00 3.58
3435 4132 6.969993 AAAATTGTACTAAAGCCCTGTCAA 57.030 33.333 0.00 0.00 0.00 3.18
3436 4133 7.539034 AAAATTGTACTAAAGCCCTGTCAAT 57.461 32.000 0.00 0.00 0.00 2.57
3437 4134 7.539034 AAATTGTACTAAAGCCCTGTCAATT 57.461 32.000 0.00 0.00 36.34 2.32
3438 4135 8.644374 AAATTGTACTAAAGCCCTGTCAATTA 57.356 30.769 0.00 0.00 34.60 1.40
3439 4136 8.644374 AATTGTACTAAAGCCCTGTCAATTAA 57.356 30.769 0.00 0.00 34.16 1.40
3440 4137 8.823220 ATTGTACTAAAGCCCTGTCAATTAAT 57.177 30.769 0.00 0.00 0.00 1.40
3441 4138 8.644374 TTGTACTAAAGCCCTGTCAATTAATT 57.356 30.769 0.00 0.00 0.00 1.40
3442 4139 8.644374 TGTACTAAAGCCCTGTCAATTAATTT 57.356 30.769 0.00 0.00 0.00 1.82
3443 4140 8.519526 TGTACTAAAGCCCTGTCAATTAATTTG 58.480 33.333 0.00 0.00 36.61 2.32
3444 4141 6.398095 ACTAAAGCCCTGTCAATTAATTTGC 58.602 36.000 0.00 0.00 35.16 3.68
3445 4142 4.888326 AAGCCCTGTCAATTAATTTGCA 57.112 36.364 0.00 0.03 35.16 4.08
3446 4143 4.192429 AGCCCTGTCAATTAATTTGCAC 57.808 40.909 0.00 0.00 35.16 4.57
3447 4144 3.055891 AGCCCTGTCAATTAATTTGCACC 60.056 43.478 0.00 0.00 35.16 5.01
3448 4145 3.510719 CCCTGTCAATTAATTTGCACCG 58.489 45.455 0.00 0.00 35.16 4.94
3449 4146 3.510719 CCTGTCAATTAATTTGCACCGG 58.489 45.455 0.00 0.00 35.16 5.28
3450 4147 3.192422 CCTGTCAATTAATTTGCACCGGA 59.808 43.478 9.46 0.00 35.16 5.14
3451 4148 4.414852 CTGTCAATTAATTTGCACCGGAG 58.585 43.478 9.46 0.00 35.16 4.63
3452 4149 3.192422 TGTCAATTAATTTGCACCGGAGG 59.808 43.478 9.46 0.00 44.77 4.30
3453 4150 2.757868 TCAATTAATTTGCACCGGAGGG 59.242 45.455 9.46 0.00 43.95 4.30
3454 4151 3.816118 TCAATTAATTTGCACCGGAGGGT 60.816 43.478 9.46 0.00 43.95 4.34
3471 4168 6.761312 CGGAGGGTGTATGTAAATATAACCA 58.239 40.000 6.52 0.00 0.00 3.67
3472 4169 7.391620 CGGAGGGTGTATGTAAATATAACCAT 58.608 38.462 6.52 1.31 0.00 3.55
3473 4170 7.881232 CGGAGGGTGTATGTAAATATAACCATT 59.119 37.037 6.52 0.00 0.00 3.16
3474 4171 9.582648 GGAGGGTGTATGTAAATATAACCATTT 57.417 33.333 6.52 0.00 32.91 2.32
3483 4180 9.973450 ATGTAAATATAACCATTTATTGCGCAA 57.027 25.926 27.24 27.24 33.98 4.85
3484 4181 9.973450 TGTAAATATAACCATTTATTGCGCAAT 57.027 25.926 35.42 35.42 33.98 3.56
3486 4183 8.885494 AAATATAACCATTTATTGCGCAATGT 57.115 26.923 38.81 26.79 32.50 2.71
3487 4184 8.885494 AATATAACCATTTATTGCGCAATGTT 57.115 26.923 38.81 32.60 32.50 2.71
3488 4185 9.973450 AATATAACCATTTATTGCGCAATGTTA 57.027 25.926 38.81 33.40 32.50 2.41
3490 4187 6.826893 AACCATTTATTGCGCAATGTTATC 57.173 33.333 38.81 0.00 32.50 1.75
3491 4188 6.147864 ACCATTTATTGCGCAATGTTATCT 57.852 33.333 38.81 19.25 32.50 1.98
3492 4189 7.270757 ACCATTTATTGCGCAATGTTATCTA 57.729 32.000 38.81 19.20 32.50 1.98
3493 4190 7.138736 ACCATTTATTGCGCAATGTTATCTAC 58.861 34.615 38.81 0.00 32.50 2.59
3494 4191 7.013274 ACCATTTATTGCGCAATGTTATCTACT 59.987 33.333 38.81 17.10 32.50 2.57
3495 4192 8.503196 CCATTTATTGCGCAATGTTATCTACTA 58.497 33.333 38.81 17.06 32.50 1.82
3496 4193 9.318041 CATTTATTGCGCAATGTTATCTACTAC 57.682 33.333 38.81 0.00 32.50 2.73
3497 4194 5.924475 ATTGCGCAATGTTATCTACTACC 57.076 39.130 33.48 0.00 0.00 3.18
3498 4195 4.665833 TGCGCAATGTTATCTACTACCT 57.334 40.909 8.16 0.00 0.00 3.08
3499 4196 4.617959 TGCGCAATGTTATCTACTACCTC 58.382 43.478 8.16 0.00 0.00 3.85
3500 4197 3.988517 GCGCAATGTTATCTACTACCTCC 59.011 47.826 0.30 0.00 0.00 4.30
3501 4198 4.227538 CGCAATGTTATCTACTACCTCCG 58.772 47.826 0.00 0.00 0.00 4.63
3502 4199 4.261489 CGCAATGTTATCTACTACCTCCGT 60.261 45.833 0.00 0.00 0.00 4.69
3503 4200 5.221130 GCAATGTTATCTACTACCTCCGTC 58.779 45.833 0.00 0.00 0.00 4.79
3504 4201 5.770417 CAATGTTATCTACTACCTCCGTCC 58.230 45.833 0.00 0.00 0.00 4.79
3505 4202 3.470709 TGTTATCTACTACCTCCGTCCG 58.529 50.000 0.00 0.00 0.00 4.79
3506 4203 2.810852 GTTATCTACTACCTCCGTCCGG 59.189 54.545 0.00 0.00 0.00 5.14
3507 4204 0.110104 ATCTACTACCTCCGTCCGGG 59.890 60.000 0.00 0.00 35.59 5.73
3508 4205 1.225704 CTACTACCTCCGTCCGGGT 59.774 63.158 0.00 0.00 39.40 5.28
3509 4206 1.077501 TACTACCTCCGTCCGGGTG 60.078 63.158 0.00 0.00 37.07 4.61
3510 4207 1.852157 TACTACCTCCGTCCGGGTGT 61.852 60.000 0.00 6.14 37.07 4.16
3511 4208 1.077501 CTACCTCCGTCCGGGTGTA 60.078 63.158 0.00 6.94 37.07 2.90
3512 4209 0.466922 CTACCTCCGTCCGGGTGTAT 60.467 60.000 0.00 0.00 37.07 2.29
3513 4210 0.843309 TACCTCCGTCCGGGTGTATA 59.157 55.000 0.00 0.00 37.07 1.47
3514 4211 0.033208 ACCTCCGTCCGGGTGTATAA 60.033 55.000 0.00 0.00 37.00 0.98
3515 4212 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
3516 4213 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
3517 4214 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
3518 4215 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
3519 4216 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
3520 4217 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
3521 4218 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
3522 4219 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
3523 4220 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
3524 4221 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
3525 4222 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
3526 4223 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
3527 4224 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
3528 4225 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
3529 4226 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
3530 4227 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
3531 4228 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
3532 4229 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
3533 4230 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
3534 4231 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
3535 4232 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
3536 4233 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
3537 4234 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
3538 4235 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
3539 4236 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
3540 4237 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
3541 4238 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
3542 4239 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
3543 4240 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
3544 4241 5.008019 TCGCGTAGTTCTAGGTCGATAATTT 59.992 40.000 5.77 0.00 0.00 1.82
3545 4242 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
3546 4243 6.852853 CGCGTAGTTCTAGGTCGATAATTTAA 59.147 38.462 0.00 0.00 0.00 1.52
3547 4244 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
3548 4245 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
3605 4302 8.818141 ATATATTCAGAAACTACATCCGTGTG 57.182 34.615 0.00 0.00 39.39 3.82
3606 4303 4.594123 TTCAGAAACTACATCCGTGTGA 57.406 40.909 0.00 0.00 39.39 3.58
3607 4304 4.594123 TCAGAAACTACATCCGTGTGAA 57.406 40.909 0.00 0.00 39.39 3.18
3608 4305 4.951254 TCAGAAACTACATCCGTGTGAAA 58.049 39.130 0.00 0.00 39.39 2.69
3609 4306 5.361427 TCAGAAACTACATCCGTGTGAAAA 58.639 37.500 0.00 0.00 39.39 2.29
3610 4307 5.995282 TCAGAAACTACATCCGTGTGAAAAT 59.005 36.000 0.00 0.00 39.39 1.82
3611 4308 6.147164 TCAGAAACTACATCCGTGTGAAAATC 59.853 38.462 0.00 0.00 39.39 2.17
3612 4309 6.147821 CAGAAACTACATCCGTGTGAAAATCT 59.852 38.462 0.00 0.00 39.39 2.40
3613 4310 7.330946 CAGAAACTACATCCGTGTGAAAATCTA 59.669 37.037 0.00 0.00 39.39 1.98
3614 4311 7.545965 AGAAACTACATCCGTGTGAAAATCTAG 59.454 37.037 0.00 0.00 39.39 2.43
3615 4312 6.282199 ACTACATCCGTGTGAAAATCTAGT 57.718 37.500 0.00 0.00 39.39 2.57
3616 4313 6.100004 ACTACATCCGTGTGAAAATCTAGTG 58.900 40.000 0.00 0.00 39.39 2.74
3617 4314 4.253685 ACATCCGTGTGAAAATCTAGTGG 58.746 43.478 0.00 0.00 37.14 4.00
3618 4315 4.253685 CATCCGTGTGAAAATCTAGTGGT 58.746 43.478 0.00 0.00 0.00 4.16
3619 4316 5.046878 ACATCCGTGTGAAAATCTAGTGGTA 60.047 40.000 0.00 0.00 37.14 3.25
3620 4317 5.670792 TCCGTGTGAAAATCTAGTGGTAT 57.329 39.130 0.00 0.00 0.00 2.73
3621 4318 6.778834 TCCGTGTGAAAATCTAGTGGTATA 57.221 37.500 0.00 0.00 0.00 1.47
3622 4319 6.567050 TCCGTGTGAAAATCTAGTGGTATAC 58.433 40.000 0.00 0.00 0.00 1.47
3623 4320 6.379133 TCCGTGTGAAAATCTAGTGGTATACT 59.621 38.462 2.25 0.00 43.56 2.12
3624 4321 7.039882 CCGTGTGAAAATCTAGTGGTATACTT 58.960 38.462 2.25 0.00 40.89 2.24
3625 4322 7.548075 CCGTGTGAAAATCTAGTGGTATACTTT 59.452 37.037 2.25 0.00 40.89 2.66
3626 4323 8.932791 CGTGTGAAAATCTAGTGGTATACTTTT 58.067 33.333 2.25 0.00 40.89 2.27
3667 4364 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
3668 4365 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
3670 4367 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
3671 4368 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
3672 4369 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
3673 4370 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
3674 4371 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
3675 4372 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
3676 4373 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
3677 4374 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
3678 4375 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
3679 4376 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
3680 4377 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
3681 4378 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
3682 4379 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
3683 4380 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
3684 4381 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
3685 4382 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
3686 4383 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
3687 4384 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
3688 4385 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
3689 4386 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
3690 4387 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
3691 4388 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
3692 4389 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
3693 4390 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
3694 4391 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
3695 4392 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
3696 4393 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
3697 4394 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
3698 4395 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
3699 4396 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
3700 4397 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
3701 4398 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
3702 4399 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
3703 4400 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
3704 4401 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
3712 4409 3.666192 CCGGACGGAGGGAGTATAT 57.334 57.895 4.40 0.00 37.50 0.86
3713 4410 1.920610 CCGGACGGAGGGAGTATATT 58.079 55.000 4.40 0.00 37.50 1.28
3714 4411 2.245582 CCGGACGGAGGGAGTATATTT 58.754 52.381 4.40 0.00 37.50 1.40
3715 4412 2.631545 CCGGACGGAGGGAGTATATTTT 59.368 50.000 4.40 0.00 37.50 1.82
3716 4413 3.554337 CCGGACGGAGGGAGTATATTTTG 60.554 52.174 4.40 0.00 37.50 2.44
3717 4414 3.069158 CGGACGGAGGGAGTATATTTTGT 59.931 47.826 0.00 0.00 0.00 2.83
3718 4415 4.377897 GGACGGAGGGAGTATATTTTGTG 58.622 47.826 0.00 0.00 0.00 3.33
3719 4416 4.377897 GACGGAGGGAGTATATTTTGTGG 58.622 47.826 0.00 0.00 0.00 4.17
3720 4417 3.778629 ACGGAGGGAGTATATTTTGTGGT 59.221 43.478 0.00 0.00 0.00 4.16
3721 4418 4.127171 CGGAGGGAGTATATTTTGTGGTG 58.873 47.826 0.00 0.00 0.00 4.17
3722 4419 4.383770 CGGAGGGAGTATATTTTGTGGTGT 60.384 45.833 0.00 0.00 0.00 4.16
3723 4420 5.163385 CGGAGGGAGTATATTTTGTGGTGTA 60.163 44.000 0.00 0.00 0.00 2.90
3724 4421 6.630863 CGGAGGGAGTATATTTTGTGGTGTAA 60.631 42.308 0.00 0.00 0.00 2.41
3725 4422 7.287810 GGAGGGAGTATATTTTGTGGTGTAAT 58.712 38.462 0.00 0.00 0.00 1.89
3726 4423 8.434392 GGAGGGAGTATATTTTGTGGTGTAATA 58.566 37.037 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.827921 CCCAAACAAATTGAGCTAGGCT 59.172 45.455 0.00 0.00 41.85 4.58
1 2 2.825532 TCCCAAACAAATTGAGCTAGGC 59.174 45.455 0.00 0.00 41.85 3.93
2 3 3.826157 TGTCCCAAACAAATTGAGCTAGG 59.174 43.478 0.00 0.00 41.85 3.02
3 4 5.452078 TTGTCCCAAACAAATTGAGCTAG 57.548 39.130 0.00 0.00 44.83 3.42
13 14 4.282496 TCTAAGCCTTTTGTCCCAAACAA 58.718 39.130 0.00 0.00 46.11 2.83
14 15 3.904717 TCTAAGCCTTTTGTCCCAAACA 58.095 40.909 0.00 0.00 35.59 2.83
15 16 4.583073 TCTTCTAAGCCTTTTGTCCCAAAC 59.417 41.667 0.00 0.00 0.00 2.93
16 17 4.798882 TCTTCTAAGCCTTTTGTCCCAAA 58.201 39.130 0.00 0.00 0.00 3.28
17 18 4.447138 TCTTCTAAGCCTTTTGTCCCAA 57.553 40.909 0.00 0.00 0.00 4.12
18 19 4.104102 TCTTCTTCTAAGCCTTTTGTCCCA 59.896 41.667 0.00 0.00 0.00 4.37
19 20 4.652822 TCTTCTTCTAAGCCTTTTGTCCC 58.347 43.478 0.00 0.00 0.00 4.46
20 21 5.998363 TCTTCTTCTTCTAAGCCTTTTGTCC 59.002 40.000 0.00 0.00 0.00 4.02
21 22 7.174080 ACATCTTCTTCTTCTAAGCCTTTTGTC 59.826 37.037 0.00 0.00 0.00 3.18
22 23 7.001073 ACATCTTCTTCTTCTAAGCCTTTTGT 58.999 34.615 0.00 0.00 0.00 2.83
23 24 7.446001 ACATCTTCTTCTTCTAAGCCTTTTG 57.554 36.000 0.00 0.00 0.00 2.44
24 25 8.470657 AAACATCTTCTTCTTCTAAGCCTTTT 57.529 30.769 0.00 0.00 0.00 2.27
25 26 9.746457 ATAAACATCTTCTTCTTCTAAGCCTTT 57.254 29.630 0.00 0.00 0.00 3.11
28 29 8.769891 GCTATAAACATCTTCTTCTTCTAAGCC 58.230 37.037 0.00 0.00 0.00 4.35
29 30 8.484008 CGCTATAAACATCTTCTTCTTCTAAGC 58.516 37.037 0.00 0.00 0.00 3.09
30 31 9.737427 TCGCTATAAACATCTTCTTCTTCTAAG 57.263 33.333 0.00 0.00 0.00 2.18
32 33 9.684448 CATCGCTATAAACATCTTCTTCTTCTA 57.316 33.333 0.00 0.00 0.00 2.10
33 34 8.417106 TCATCGCTATAAACATCTTCTTCTTCT 58.583 33.333 0.00 0.00 0.00 2.85
34 35 8.484008 GTCATCGCTATAAACATCTTCTTCTTC 58.516 37.037 0.00 0.00 0.00 2.87
35 36 7.168302 CGTCATCGCTATAAACATCTTCTTCTT 59.832 37.037 0.00 0.00 0.00 2.52
36 37 6.638873 CGTCATCGCTATAAACATCTTCTTCT 59.361 38.462 0.00 0.00 0.00 2.85
37 38 6.637254 TCGTCATCGCTATAAACATCTTCTTC 59.363 38.462 0.00 0.00 36.96 2.87
38 39 6.418226 GTCGTCATCGCTATAAACATCTTCTT 59.582 38.462 0.00 0.00 36.96 2.52
39 40 5.915758 GTCGTCATCGCTATAAACATCTTCT 59.084 40.000 0.00 0.00 36.96 2.85
40 41 5.915758 AGTCGTCATCGCTATAAACATCTTC 59.084 40.000 0.00 0.00 36.96 2.87
41 42 5.833082 AGTCGTCATCGCTATAAACATCTT 58.167 37.500 0.00 0.00 36.96 2.40
42 43 5.239744 AGAGTCGTCATCGCTATAAACATCT 59.760 40.000 0.00 0.00 36.96 2.90
43 44 5.453648 AGAGTCGTCATCGCTATAAACATC 58.546 41.667 0.00 0.00 36.96 3.06
44 45 5.440234 AGAGTCGTCATCGCTATAAACAT 57.560 39.130 0.00 0.00 36.96 2.71
45 46 4.895224 AGAGTCGTCATCGCTATAAACA 57.105 40.909 0.00 0.00 36.96 2.83
46 47 5.745514 TGTAGAGTCGTCATCGCTATAAAC 58.254 41.667 0.00 0.00 36.96 2.01
47 48 5.996669 TGTAGAGTCGTCATCGCTATAAA 57.003 39.130 0.00 0.00 36.96 1.40
48 49 5.996669 TTGTAGAGTCGTCATCGCTATAA 57.003 39.130 0.00 0.00 36.96 0.98
49 50 5.106673 CCATTGTAGAGTCGTCATCGCTATA 60.107 44.000 0.00 0.00 36.96 1.31
50 51 4.320567 CCATTGTAGAGTCGTCATCGCTAT 60.321 45.833 0.00 0.00 36.96 2.97
51 52 3.003378 CCATTGTAGAGTCGTCATCGCTA 59.997 47.826 0.00 0.00 36.96 4.26
52 53 2.223595 CCATTGTAGAGTCGTCATCGCT 60.224 50.000 0.00 0.00 36.96 4.93
53 54 2.120232 CCATTGTAGAGTCGTCATCGC 58.880 52.381 0.00 0.00 36.96 4.58
54 55 3.422417 ACCATTGTAGAGTCGTCATCG 57.578 47.619 0.00 0.00 38.55 3.84
55 56 3.307242 GCAACCATTGTAGAGTCGTCATC 59.693 47.826 0.00 0.00 0.00 2.92
105 110 1.798813 CCACAAGAACTTCGGCACTAC 59.201 52.381 0.00 0.00 0.00 2.73
208 232 3.621268 TGTGCTATATTGTTCGGCTTCAC 59.379 43.478 0.00 0.00 0.00 3.18
322 347 0.878086 GATGCGCTGCTTACCTCTCC 60.878 60.000 9.73 0.00 0.00 3.71
374 399 6.151663 TGCACTAAACAATATCTACGGCTA 57.848 37.500 0.00 0.00 0.00 3.93
377 402 8.656849 GGATTATGCACTAAACAATATCTACGG 58.343 37.037 0.00 0.00 0.00 4.02
378 403 9.203421 TGGATTATGCACTAAACAATATCTACG 57.797 33.333 0.00 0.00 0.00 3.51
479 504 5.006165 AGAGTACGTACGTATGTAGAACAGC 59.994 44.000 29.05 13.21 32.82 4.40
493 518 5.686397 GGTGAATGATTGCTAGAGTACGTAC 59.314 44.000 18.10 18.10 0.00 3.67
500 529 8.153550 ACTTAATAGGGTGAATGATTGCTAGAG 58.846 37.037 0.00 0.00 0.00 2.43
543 572 1.171308 GTGATGCTGATTGTGGCAGT 58.829 50.000 0.00 0.00 41.88 4.40
546 575 0.889994 TTGGTGATGCTGATTGTGGC 59.110 50.000 0.00 0.00 0.00 5.01
575 604 5.125100 TCACTTCCTGACGTACGTATTTT 57.875 39.130 22.87 0.00 0.00 1.82
584 613 9.314321 CAGTATTATTTTATCACTTCCTGACGT 57.686 33.333 0.00 0.00 0.00 4.34
600 629 5.070047 AGCTGCTACCGTACCAGTATTATTT 59.930 40.000 0.00 0.00 0.00 1.40
614 643 1.425412 AAAACGTGTAGCTGCTACCG 58.575 50.000 30.83 30.83 36.24 4.02
702 768 4.992319 AGTACTAGGTTCTCATCGATCTCG 59.008 45.833 0.00 0.00 41.45 4.04
808 880 1.593750 CTAGCATGACAGCGAGGCC 60.594 63.158 0.00 0.00 40.15 5.19
833 905 1.020861 TGTCAAGCCGTGCATGCTAG 61.021 55.000 20.33 12.38 38.34 3.42
834 906 0.392863 ATGTCAAGCCGTGCATGCTA 60.393 50.000 20.33 2.15 38.34 3.49
836 908 0.028505 CTATGTCAAGCCGTGCATGC 59.971 55.000 11.82 11.82 0.00 4.06
864 1172 3.775654 GGGTGGAGAGGACTGGCG 61.776 72.222 0.00 0.00 0.00 5.69
901 1209 1.602377 GCACCGGCTTTATATGTGTCC 59.398 52.381 0.00 0.00 36.96 4.02
902 1210 1.602377 GGCACCGGCTTTATATGTGTC 59.398 52.381 0.00 0.00 40.87 3.67
919 1230 0.320683 AATATATCGCAGCGCAGGCA 60.321 50.000 21.42 10.68 43.41 4.75
971 1286 1.229853 ATTTGGACCCCGGACCTCT 60.230 57.895 0.73 0.00 0.00 3.69
1033 1348 4.112341 GTACCGCACGCCGAGACT 62.112 66.667 0.00 0.00 40.02 3.24
1146 1461 3.697542 TCATGGTGCTTGGATGATCTTTG 59.302 43.478 0.00 0.00 0.00 2.77
1147 1462 3.972133 TCATGGTGCTTGGATGATCTTT 58.028 40.909 0.00 0.00 0.00 2.52
1245 1560 0.392327 GCTCCTCTTTGACAGGGCTC 60.392 60.000 0.00 0.00 0.00 4.70
1252 1567 0.739112 CCGCTCAGCTCCTCTTTGAC 60.739 60.000 0.00 0.00 0.00 3.18
1260 1575 0.318784 CCGTAATACCGCTCAGCTCC 60.319 60.000 0.00 0.00 0.00 4.70
1326 1641 5.221342 CGGCACCTCTTCTTCAGAACTATAT 60.221 44.000 0.00 0.00 0.00 0.86
1407 1722 0.992695 TCTCCTCTTCCTCCTCGTCA 59.007 55.000 0.00 0.00 0.00 4.35
1408 1723 2.021457 CTTCTCCTCTTCCTCCTCGTC 58.979 57.143 0.00 0.00 0.00 4.20
1409 1724 1.958069 GCTTCTCCTCTTCCTCCTCGT 60.958 57.143 0.00 0.00 0.00 4.18
1410 1725 0.744281 GCTTCTCCTCTTCCTCCTCG 59.256 60.000 0.00 0.00 0.00 4.63
1456 1771 3.947841 TTCAACGTGCACGCCTGC 61.948 61.111 37.35 0.00 44.43 4.85
1491 1806 0.743688 CTGATCCCTCCACTGACTCG 59.256 60.000 0.00 0.00 0.00 4.18
1667 1982 1.254284 TAAACAAAGGGCGGGGCATG 61.254 55.000 0.00 0.00 0.00 4.06
1675 1990 6.905578 TCTTAGTCGAAATTAAACAAAGGGC 58.094 36.000 0.00 0.00 0.00 5.19
1705 2020 3.557264 GGATCAGAAAACTTGGAGTCGGT 60.557 47.826 0.00 0.00 0.00 4.69
1710 2060 6.179040 AGAAGATGGATCAGAAAACTTGGAG 58.821 40.000 0.00 0.00 0.00 3.86
1722 2072 9.745018 AAACAGAGAAAAATAGAAGATGGATCA 57.255 29.630 0.00 0.00 0.00 2.92
1745 2095 8.177013 TCAAAACTAAACTAGGTCGTTTGAAAC 58.823 33.333 8.42 0.00 37.63 2.78
1775 2125 8.242085 TGCATGTGTTCATATGTGAAAAATTC 57.758 30.769 6.45 0.00 45.38 2.17
1850 2201 4.174129 GTATTGCACGCCACCGGC 62.174 66.667 0.00 0.00 46.75 6.13
1851 2202 2.435938 AGTATTGCACGCCACCGG 60.436 61.111 0.00 0.00 39.22 5.28
1852 2203 2.784596 CAGTATTGCACGCCACCG 59.215 61.111 0.00 0.00 41.14 4.94
1884 2235 6.238130 GGAGACACGAGCAAAAGGAATATAAC 60.238 42.308 0.00 0.00 0.00 1.89
1939 2290 1.469703 TCGGCAAACATGAAGATGCAG 59.530 47.619 0.00 5.25 40.51 4.41
2085 2437 9.533253 CATTTCCATTTCAAGTACTTTCTTTGT 57.467 29.630 5.07 0.00 0.00 2.83
2086 2438 9.748708 TCATTTCCATTTCAAGTACTTTCTTTG 57.251 29.630 5.07 2.21 0.00 2.77
2089 2441 9.750125 GTTTCATTTCCATTTCAAGTACTTTCT 57.250 29.630 5.07 0.00 0.00 2.52
2090 2442 9.750125 AGTTTCATTTCCATTTCAAGTACTTTC 57.250 29.630 5.07 0.00 0.00 2.62
2093 2445 9.793259 TCTAGTTTCATTTCCATTTCAAGTACT 57.207 29.630 0.00 0.00 0.00 2.73
2094 2446 9.827411 GTCTAGTTTCATTTCCATTTCAAGTAC 57.173 33.333 0.00 0.00 0.00 2.73
2112 2464 2.910319 TGTGGCTATGGTGGTCTAGTTT 59.090 45.455 0.00 0.00 0.00 2.66
2133 2485 4.601084 AGCCTGATATATACTACGTGGCT 58.399 43.478 0.00 0.00 42.69 4.75
2213 2577 0.520404 GTCAGTCGAGTCTACGGCAA 59.480 55.000 0.00 0.00 40.49 4.52
2443 2807 3.997397 TGCTTGCGCCGGTAGTGA 61.997 61.111 4.18 0.00 34.43 3.41
2587 2951 2.915659 TGGTCGTTGAGGGAGCGT 60.916 61.111 0.00 0.00 34.75 5.07
2691 3058 2.282827 TGGTCGAACCGGATGATGT 58.717 52.632 9.46 0.00 42.58 3.06
2833 3200 1.541147 TGTTCCCACCTTCTACGTACG 59.459 52.381 15.01 15.01 0.00 3.67
2846 3213 0.465460 GTGTGTGCTCCTTGTTCCCA 60.465 55.000 0.00 0.00 0.00 4.37
2847 3214 0.465460 TGTGTGTGCTCCTTGTTCCC 60.465 55.000 0.00 0.00 0.00 3.97
2928 3295 6.180472 CCCCAGAAGAAAATTCAGCTACTTA 58.820 40.000 0.00 0.00 0.00 2.24
2936 3303 2.379907 AGCTCCCCCAGAAGAAAATTCA 59.620 45.455 0.00 0.00 0.00 2.57
2951 3318 2.804933 GCTACTTGTATCTGCAGCTCCC 60.805 54.545 9.47 0.00 0.00 4.30
2967 3334 1.267121 TTTCTCCCTCGCAAGCTACT 58.733 50.000 0.00 0.00 37.18 2.57
3047 3418 7.820386 ACAATTTGAAATCATGCAAGCTTGATA 59.180 29.630 30.39 17.59 39.07 2.15
3048 3419 6.653320 ACAATTTGAAATCATGCAAGCTTGAT 59.347 30.769 30.39 16.64 40.88 2.57
3049 3420 5.992829 ACAATTTGAAATCATGCAAGCTTGA 59.007 32.000 30.39 15.09 35.17 3.02
3050 3421 6.236017 ACAATTTGAAATCATGCAAGCTTG 57.764 33.333 22.44 22.44 0.00 4.01
3055 3426 9.878667 AATCAGATACAATTTGAAATCATGCAA 57.121 25.926 2.79 0.00 0.00 4.08
3076 3447 9.205719 CAACTGATAGTCCATCTCATTAATCAG 57.794 37.037 7.30 7.30 42.92 2.90
3107 3478 2.010145 AATGATCAACCGGTCAGACG 57.990 50.000 8.04 0.00 0.00 4.18
3108 3479 6.761714 ACTAAATAATGATCAACCGGTCAGAC 59.238 38.462 8.04 5.23 0.00 3.51
3109 3480 6.761242 CACTAAATAATGATCAACCGGTCAGA 59.239 38.462 8.04 10.26 0.00 3.27
3110 3481 6.761242 TCACTAAATAATGATCAACCGGTCAG 59.239 38.462 8.04 3.63 0.00 3.51
3111 3482 6.645306 TCACTAAATAATGATCAACCGGTCA 58.355 36.000 8.04 0.56 0.00 4.02
3112 3483 7.307989 CCATCACTAAATAATGATCAACCGGTC 60.308 40.741 8.04 0.00 33.18 4.79
3116 3490 6.017109 ACGCCATCACTAAATAATGATCAACC 60.017 38.462 0.00 0.00 33.18 3.77
3123 3497 4.024048 GGGACACGCCATCACTAAATAATG 60.024 45.833 0.00 0.00 38.95 1.90
3321 3939 9.657419 GGACATGTTTAAATCCATCATCTTTTT 57.343 29.630 0.00 0.00 0.00 1.94
3323 3941 7.620888 AGGGACATGTTTAAATCCATCATCTTT 59.379 33.333 0.00 0.00 32.45 2.52
3324 3942 7.069085 CAGGGACATGTTTAAATCCATCATCTT 59.931 37.037 0.00 0.00 32.45 2.40
3325 3943 6.548622 CAGGGACATGTTTAAATCCATCATCT 59.451 38.462 0.00 0.00 32.45 2.90
3326 3944 6.322201 ACAGGGACATGTTTAAATCCATCATC 59.678 38.462 0.00 1.37 32.45 2.92
3329 4026 6.530019 AACAGGGACATGTTTAAATCCATC 57.470 37.500 0.00 0.00 40.47 3.51
3348 4045 9.442047 GATTGGAGGGAGTATCATAATTAACAG 57.558 37.037 0.00 0.00 36.25 3.16
3352 4049 8.518720 TTGGATTGGAGGGAGTATCATAATTA 57.481 34.615 0.00 0.00 36.25 1.40
3387 4084 7.837202 AGTATAACGTTGTATTAAAGCTGCA 57.163 32.000 11.99 0.00 0.00 4.41
3407 4104 9.392259 GACAGGGCTTTAGTACAATTTTAGTAT 57.608 33.333 0.00 0.00 0.00 2.12
3408 4105 8.377034 TGACAGGGCTTTAGTACAATTTTAGTA 58.623 33.333 0.00 0.00 0.00 1.82
3409 4106 7.228590 TGACAGGGCTTTAGTACAATTTTAGT 58.771 34.615 0.00 0.00 0.00 2.24
3410 4107 7.681939 TGACAGGGCTTTAGTACAATTTTAG 57.318 36.000 0.00 0.00 0.00 1.85
3411 4108 8.644374 ATTGACAGGGCTTTAGTACAATTTTA 57.356 30.769 0.00 0.00 0.00 1.52
3412 4109 6.969993 TTGACAGGGCTTTAGTACAATTTT 57.030 33.333 0.00 0.00 0.00 1.82
3413 4110 7.539034 AATTGACAGGGCTTTAGTACAATTT 57.461 32.000 0.00 0.00 34.54 1.82
3414 4111 8.644374 TTAATTGACAGGGCTTTAGTACAATT 57.356 30.769 0.00 0.00 39.14 2.32
3415 4112 8.823220 ATTAATTGACAGGGCTTTAGTACAAT 57.177 30.769 0.00 0.00 0.00 2.71
3416 4113 8.644374 AATTAATTGACAGGGCTTTAGTACAA 57.356 30.769 0.00 0.00 0.00 2.41
3417 4114 8.519526 CAAATTAATTGACAGGGCTTTAGTACA 58.480 33.333 0.39 0.00 41.85 2.90
3418 4115 7.488150 GCAAATTAATTGACAGGGCTTTAGTAC 59.512 37.037 0.39 0.00 41.85 2.73
3419 4116 7.177568 TGCAAATTAATTGACAGGGCTTTAGTA 59.822 33.333 0.39 0.00 41.85 1.82
3420 4117 6.014669 TGCAAATTAATTGACAGGGCTTTAGT 60.015 34.615 0.39 0.00 41.85 2.24
3421 4118 6.311200 GTGCAAATTAATTGACAGGGCTTTAG 59.689 38.462 0.39 0.00 41.85 1.85
3422 4119 6.162777 GTGCAAATTAATTGACAGGGCTTTA 58.837 36.000 0.39 0.00 41.85 1.85
3423 4120 4.996758 GTGCAAATTAATTGACAGGGCTTT 59.003 37.500 0.39 0.00 41.85 3.51
3424 4121 4.563374 GGTGCAAATTAATTGACAGGGCTT 60.563 41.667 0.39 0.00 41.85 4.35
3425 4122 3.055891 GGTGCAAATTAATTGACAGGGCT 60.056 43.478 0.39 0.00 41.85 5.19
3426 4123 3.261580 GGTGCAAATTAATTGACAGGGC 58.738 45.455 0.39 0.73 41.85 5.19
3427 4124 3.510719 CGGTGCAAATTAATTGACAGGG 58.489 45.455 0.39 0.00 41.85 4.45
3428 4125 3.192422 TCCGGTGCAAATTAATTGACAGG 59.808 43.478 0.00 9.19 41.85 4.00
3429 4126 4.414852 CTCCGGTGCAAATTAATTGACAG 58.585 43.478 0.00 0.80 41.85 3.51
3430 4127 3.192422 CCTCCGGTGCAAATTAATTGACA 59.808 43.478 0.00 0.43 41.85 3.58
3431 4128 3.428862 CCCTCCGGTGCAAATTAATTGAC 60.429 47.826 0.00 0.00 41.85 3.18
3432 4129 2.757868 CCCTCCGGTGCAAATTAATTGA 59.242 45.455 0.00 0.00 41.85 2.57
3433 4130 2.495669 ACCCTCCGGTGCAAATTAATTG 59.504 45.455 0.00 0.00 42.48 2.32
3434 4131 2.815158 ACCCTCCGGTGCAAATTAATT 58.185 42.857 0.00 0.00 42.48 1.40
3435 4132 2.525105 ACCCTCCGGTGCAAATTAAT 57.475 45.000 0.00 0.00 42.48 1.40
3445 4142 6.239686 GGTTATATTTACATACACCCTCCGGT 60.240 42.308 0.00 0.00 46.31 5.28
3446 4143 6.168389 GGTTATATTTACATACACCCTCCGG 58.832 44.000 0.00 0.00 0.00 5.14
3447 4144 6.761312 TGGTTATATTTACATACACCCTCCG 58.239 40.000 0.00 0.00 0.00 4.63
3448 4145 9.582648 AAATGGTTATATTTACATACACCCTCC 57.417 33.333 0.00 0.00 0.00 4.30
3457 4154 9.973450 TTGCGCAATAAATGGTTATATTTACAT 57.027 25.926 21.02 0.00 35.88 2.29
3458 4155 9.973450 ATTGCGCAATAAATGGTTATATTTACA 57.027 25.926 33.14 0.00 35.88 2.41
3460 4157 9.973450 ACATTGCGCAATAAATGGTTATATTTA 57.027 25.926 33.44 1.23 37.96 1.40
3461 4158 8.885494 ACATTGCGCAATAAATGGTTATATTT 57.115 26.923 33.44 5.58 37.96 1.40
3462 4159 8.885494 AACATTGCGCAATAAATGGTTATATT 57.115 26.923 33.44 10.49 37.96 1.28
3464 4161 9.619316 GATAACATTGCGCAATAAATGGTTATA 57.381 29.630 33.18 21.86 37.96 0.98
3465 4162 8.359642 AGATAACATTGCGCAATAAATGGTTAT 58.640 29.630 33.41 33.41 37.96 1.89
3466 4163 7.711846 AGATAACATTGCGCAATAAATGGTTA 58.288 30.769 33.44 31.03 37.96 2.85
3467 4164 6.572519 AGATAACATTGCGCAATAAATGGTT 58.427 32.000 33.44 30.11 37.96 3.67
3468 4165 6.147864 AGATAACATTGCGCAATAAATGGT 57.852 33.333 33.44 24.07 37.96 3.55
3469 4166 7.362662 AGTAGATAACATTGCGCAATAAATGG 58.637 34.615 33.44 22.89 37.96 3.16
3470 4167 9.318041 GTAGTAGATAACATTGCGCAATAAATG 57.682 33.333 33.44 24.97 39.26 2.32
3471 4168 8.504005 GGTAGTAGATAACATTGCGCAATAAAT 58.496 33.333 33.44 24.88 0.00 1.40
3472 4169 7.713507 AGGTAGTAGATAACATTGCGCAATAAA 59.286 33.333 33.44 21.64 0.00 1.40
3473 4170 7.214381 AGGTAGTAGATAACATTGCGCAATAA 58.786 34.615 33.44 21.98 0.00 1.40
3474 4171 6.755206 AGGTAGTAGATAACATTGCGCAATA 58.245 36.000 33.44 20.07 0.00 1.90
3475 4172 5.611374 AGGTAGTAGATAACATTGCGCAAT 58.389 37.500 29.36 29.36 0.00 3.56
3476 4173 5.018539 AGGTAGTAGATAACATTGCGCAA 57.981 39.130 27.24 27.24 0.00 4.85
3477 4174 4.500887 GGAGGTAGTAGATAACATTGCGCA 60.501 45.833 5.66 5.66 0.00 6.09
3478 4175 3.988517 GGAGGTAGTAGATAACATTGCGC 59.011 47.826 0.00 0.00 0.00 6.09
3479 4176 4.227538 CGGAGGTAGTAGATAACATTGCG 58.772 47.826 0.00 0.00 0.00 4.85
3480 4177 5.197682 ACGGAGGTAGTAGATAACATTGC 57.802 43.478 0.00 0.00 0.00 3.56
3481 4178 5.562307 CGGACGGAGGTAGTAGATAACATTG 60.562 48.000 0.00 0.00 0.00 2.82
3482 4179 4.518211 CGGACGGAGGTAGTAGATAACATT 59.482 45.833 0.00 0.00 0.00 2.71
3483 4180 4.070716 CGGACGGAGGTAGTAGATAACAT 58.929 47.826 0.00 0.00 0.00 2.71
3484 4181 3.470709 CGGACGGAGGTAGTAGATAACA 58.529 50.000 0.00 0.00 0.00 2.41
3485 4182 2.810852 CCGGACGGAGGTAGTAGATAAC 59.189 54.545 4.40 0.00 37.50 1.89
3486 4183 2.224621 CCCGGACGGAGGTAGTAGATAA 60.225 54.545 13.13 0.00 37.50 1.75
3487 4184 1.349026 CCCGGACGGAGGTAGTAGATA 59.651 57.143 13.13 0.00 37.50 1.98
3488 4185 0.110104 CCCGGACGGAGGTAGTAGAT 59.890 60.000 13.13 0.00 37.50 1.98
3489 4186 1.274703 ACCCGGACGGAGGTAGTAGA 61.275 60.000 13.13 0.00 37.50 2.59
3490 4187 1.099879 CACCCGGACGGAGGTAGTAG 61.100 65.000 13.13 0.00 37.50 2.57
3491 4188 1.077501 CACCCGGACGGAGGTAGTA 60.078 63.158 13.13 0.00 37.50 1.82
3492 4189 1.852157 TACACCCGGACGGAGGTAGT 61.852 60.000 13.13 5.67 37.50 2.73
3493 4190 0.466922 ATACACCCGGACGGAGGTAG 60.467 60.000 13.13 0.00 37.50 3.18
3494 4191 0.843309 TATACACCCGGACGGAGGTA 59.157 55.000 13.13 13.58 37.50 3.08
3495 4192 0.033208 TTATACACCCGGACGGAGGT 60.033 55.000 13.13 11.83 37.50 3.85
3496 4193 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
3497 4194 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
3498 4195 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
3499 4196 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
3500 4197 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
3501 4198 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
3502 4199 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
3503 4200 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
3504 4201 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
3505 4202 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
3506 4203 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
3507 4204 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
3508 4205 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
3509 4206 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
3510 4207 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
3511 4208 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
3512 4209 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
3513 4210 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
3514 4211 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
3515 4212 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
3516 4213 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
3517 4214 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
3518 4215 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
3519 4216 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
3520 4217 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
3521 4218 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
3522 4219 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
3579 4276 9.908152 CACACGGATGTAGTTTCTGAATATATA 57.092 33.333 0.00 0.00 36.72 0.86
3580 4277 8.638873 TCACACGGATGTAGTTTCTGAATATAT 58.361 33.333 0.00 0.00 36.72 0.86
3581 4278 8.002984 TCACACGGATGTAGTTTCTGAATATA 57.997 34.615 0.00 0.00 36.72 0.86
3582 4279 6.873997 TCACACGGATGTAGTTTCTGAATAT 58.126 36.000 0.00 0.00 36.72 1.28
3583 4280 6.275494 TCACACGGATGTAGTTTCTGAATA 57.725 37.500 0.00 0.00 36.72 1.75
3584 4281 5.147330 TCACACGGATGTAGTTTCTGAAT 57.853 39.130 0.00 0.00 36.72 2.57
3585 4282 4.594123 TCACACGGATGTAGTTTCTGAA 57.406 40.909 0.00 0.00 36.72 3.02
3586 4283 4.594123 TTCACACGGATGTAGTTTCTGA 57.406 40.909 0.00 0.00 36.72 3.27
3587 4284 5.666969 TTTTCACACGGATGTAGTTTCTG 57.333 39.130 0.00 0.00 36.72 3.02
3588 4285 6.231211 AGATTTTCACACGGATGTAGTTTCT 58.769 36.000 0.00 0.00 36.72 2.52
3589 4286 6.481954 AGATTTTCACACGGATGTAGTTTC 57.518 37.500 0.00 0.00 36.72 2.78
3590 4287 7.117812 CACTAGATTTTCACACGGATGTAGTTT 59.882 37.037 0.00 0.00 36.72 2.66
3591 4288 6.590292 CACTAGATTTTCACACGGATGTAGTT 59.410 38.462 0.00 0.00 36.72 2.24
3592 4289 6.100004 CACTAGATTTTCACACGGATGTAGT 58.900 40.000 0.00 0.00 36.72 2.73
3593 4290 5.520288 CCACTAGATTTTCACACGGATGTAG 59.480 44.000 0.00 0.00 36.72 2.74
3594 4291 5.046878 ACCACTAGATTTTCACACGGATGTA 60.047 40.000 0.00 0.00 36.72 2.29
3595 4292 4.253685 CCACTAGATTTTCACACGGATGT 58.746 43.478 0.00 0.00 40.80 3.06
3596 4293 4.253685 ACCACTAGATTTTCACACGGATG 58.746 43.478 0.00 0.00 0.00 3.51
3597 4294 4.553330 ACCACTAGATTTTCACACGGAT 57.447 40.909 0.00 0.00 0.00 4.18
3598 4295 5.670792 ATACCACTAGATTTTCACACGGA 57.329 39.130 0.00 0.00 0.00 4.69
3599 4296 6.570692 AGTATACCACTAGATTTTCACACGG 58.429 40.000 0.00 0.00 34.98 4.94
3600 4297 8.475331 AAAGTATACCACTAGATTTTCACACG 57.525 34.615 0.00 0.00 36.04 4.49
3641 4338 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
3642 4339 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
3644 4341 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
3645 4342 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
3646 4343 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
3647 4344 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
3648 4345 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
3649 4346 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
3650 4347 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
3651 4348 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
3652 4349 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
3653 4350 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
3654 4351 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
3655 4352 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
3656 4353 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
3657 4354 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
3658 4355 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
3659 4356 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
3660 4357 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
3661 4358 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
3662 4359 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
3663 4360 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
3664 4361 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
3665 4362 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
3666 4363 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
3667 4364 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
3668 4365 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
3669 4366 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
3670 4367 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
3671 4368 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
3672 4369 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
3673 4370 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
3674 4371 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
3675 4372 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
3676 4373 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
3677 4374 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
3678 4375 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
3679 4376 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
3680 4377 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
3681 4378 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
3682 4379 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
3683 4380 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
3684 4381 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
3685 4382 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
3686 4383 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
3687 4384 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
3688 4385 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
3689 4386 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
3691 4388 2.923634 ATACTCCCTCCGTCCGGGTG 62.924 65.000 0.00 0.00 42.56 4.61
3692 4389 1.355718 TATACTCCCTCCGTCCGGGT 61.356 60.000 0.00 0.00 42.56 5.28
3693 4390 0.039326 ATATACTCCCTCCGTCCGGG 59.961 60.000 0.00 0.00 43.38 5.73
3694 4391 1.920610 AATATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
3695 4392 3.069158 ACAAAATATACTCCCTCCGTCCG 59.931 47.826 0.00 0.00 0.00 4.79
3696 4393 4.377897 CACAAAATATACTCCCTCCGTCC 58.622 47.826 0.00 0.00 0.00 4.79
3697 4394 4.141779 ACCACAAAATATACTCCCTCCGTC 60.142 45.833 0.00 0.00 0.00 4.79
3698 4395 3.778629 ACCACAAAATATACTCCCTCCGT 59.221 43.478 0.00 0.00 0.00 4.69
3699 4396 4.127171 CACCACAAAATATACTCCCTCCG 58.873 47.826 0.00 0.00 0.00 4.63
3700 4397 5.112129 ACACCACAAAATATACTCCCTCC 57.888 43.478 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.