Multiple sequence alignment - TraesCS1A01G276600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G276600 chr1A 100.000 5838 0 0 1743 7580 471695805 471701642 0.000000e+00 10781.0
1 TraesCS1A01G276600 chr1A 100.000 1437 0 0 1 1437 471694063 471695499 0.000000e+00 2654.0
2 TraesCS1A01G276600 chr1D 95.870 3390 99 23 1743 5114 372150502 372153868 0.000000e+00 5446.0
3 TraesCS1A01G276600 chr1D 90.805 2175 117 42 5203 7333 372153881 372156016 0.000000e+00 2832.0
4 TraesCS1A01G276600 chr1D 93.321 1078 34 13 376 1437 372149411 372150466 0.000000e+00 1557.0
5 TraesCS1A01G276600 chr1D 97.947 341 7 0 1 341 372149074 372149414 6.550000e-165 592.0
6 TraesCS1A01G276600 chr1D 89.381 113 7 4 7220 7331 372286755 372286863 3.690000e-28 137.0
7 TraesCS1A01G276600 chr1B 95.195 3392 98 23 1743 5114 497126317 497129663 0.000000e+00 5301.0
8 TraesCS1A01G276600 chr1B 90.537 2198 110 32 5195 7333 497129660 497131818 0.000000e+00 2817.0
9 TraesCS1A01G276600 chr1B 94.276 1450 48 8 2 1431 497124527 497125961 0.000000e+00 2185.0
10 TraesCS1A01G276600 chrUn 90.351 114 8 3 5098 5210 279936312 279936201 6.130000e-31 147.0
11 TraesCS1A01G276600 chrUn 90.351 114 8 3 5098 5210 395541699 395541588 6.130000e-31 147.0
12 TraesCS1A01G276600 chr5A 93.878 98 3 3 5096 5193 512022288 512022382 2.200000e-30 145.0
13 TraesCS1A01G276600 chr3A 94.681 94 4 1 5110 5203 701671044 701670952 2.200000e-30 145.0
14 TraesCS1A01G276600 chr3A 80.000 100 16 3 2535 2630 623052555 623052456 3.790000e-08 71.3
15 TraesCS1A01G276600 chr7B 92.857 98 6 1 5111 5208 589394646 589394550 2.850000e-29 141.0
16 TraesCS1A01G276600 chr4B 95.455 88 4 0 5109 5196 14035332 14035245 2.850000e-29 141.0
17 TraesCS1A01G276600 chr6A 92.784 97 6 1 5104 5199 560694301 560694397 1.030000e-28 139.0
18 TraesCS1A01G276600 chr7D 89.720 107 9 2 5111 5215 594802500 594802394 1.330000e-27 135.0
19 TraesCS1A01G276600 chr2B 90.385 104 8 2 5092 5193 445897839 445897942 1.330000e-27 135.0
20 TraesCS1A01G276600 chr3D 80.000 100 16 3 2535 2630 479618855 479618756 3.790000e-08 71.3
21 TraesCS1A01G276600 chr3B 79.000 100 17 3 2535 2630 640066821 640066722 1.770000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G276600 chr1A 471694063 471701642 7579 False 6717.500000 10781 100.00000 1 7580 2 chr1A.!!$F1 7579
1 TraesCS1A01G276600 chr1D 372149074 372156016 6942 False 2606.750000 5446 94.48575 1 7333 4 chr1D.!!$F2 7332
2 TraesCS1A01G276600 chr1B 497124527 497131818 7291 False 3434.333333 5301 93.33600 2 7333 3 chr1B.!!$F1 7331

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 823 0.548682 ACAGAGCCACATCCTTCCCT 60.549 55.000 0.00 0.0 0.00 4.20 F
853 865 1.021202 CGTCTCTCTCTAGCCTGTGG 58.979 60.000 0.00 0.0 0.00 4.17 F
1183 1205 1.076705 GAGTTCTTGGGGGATGGCC 60.077 63.158 0.00 0.0 0.00 5.36 F
2534 2609 0.669932 CAGCAGCGGCAGGATATCTC 60.670 60.000 12.44 0.0 44.61 2.75 F
3152 3228 0.949397 CTGTGCTTTGAGCTTGAGCA 59.051 50.000 13.50 13.5 42.97 4.26 F
3985 4067 1.467920 TCAGCAGATCGAGCAAGAGA 58.532 50.000 2.38 0.0 0.00 3.10 F
4888 4975 0.250467 AGTTCATGCACTCTGCCGTT 60.250 50.000 0.00 0.0 44.23 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 2284 0.037590 ATGCAGGCGGTTAAGGTTCA 59.962 50.000 0.00 0.0 0.00 3.18 R
2514 2589 1.070445 GATATCCTGCCGCTGCTGT 59.930 57.895 0.70 0.0 38.71 4.40 R
2809 2884 1.335324 GCCTGTGACATTGTGTTCTGC 60.335 52.381 0.00 0.0 0.00 4.26 R
4247 4329 0.870307 CTTCGTCTAACCATCGGGCG 60.870 60.000 0.00 0.0 37.90 6.13 R
4481 4563 2.418746 GCGCTAGACCTTGAGGATTTCA 60.419 50.000 0.00 0.0 38.94 2.69 R
5623 5744 0.321564 TCATGGACTGAACCCTTGCG 60.322 55.000 0.00 0.0 0.00 4.85 R
6723 6869 0.531532 CGATGAGCCAGGCCAGTTAG 60.532 60.000 8.22 0.0 0.00 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.004982 GTGCCATGAATTTGCCATTTCTT 58.995 39.130 0.00 0.00 0.00 2.52
167 168 3.717294 CGGAGGTTGAGGGGGTGG 61.717 72.222 0.00 0.00 0.00 4.61
343 344 4.338400 CCAAAGGGTTAAGCACTAATAGGC 59.662 45.833 7.03 0.00 0.00 3.93
607 608 1.351350 AGAACTGCTCAAACCCCCTAC 59.649 52.381 0.00 0.00 0.00 3.18
668 669 6.603201 CCTCTTATCTCTCTGTCTCTCTGTTT 59.397 42.308 0.00 0.00 0.00 2.83
749 750 1.745141 GCGCCCAATGAGAGATGAAGT 60.745 52.381 0.00 0.00 0.00 3.01
813 823 0.548682 ACAGAGCCACATCCTTCCCT 60.549 55.000 0.00 0.00 0.00 4.20
821 831 3.048600 CCACATCCTTCCCTTATCTCCA 58.951 50.000 0.00 0.00 0.00 3.86
825 835 4.230455 CATCCTTCCCTTATCTCCACTCT 58.770 47.826 0.00 0.00 0.00 3.24
833 843 3.888930 CCTTATCTCCACTCTCCTCTCAC 59.111 52.174 0.00 0.00 0.00 3.51
853 865 1.021202 CGTCTCTCTCTAGCCTGTGG 58.979 60.000 0.00 0.00 0.00 4.17
1183 1205 1.076705 GAGTTCTTGGGGGATGGCC 60.077 63.158 0.00 0.00 0.00 5.36
1281 1303 2.183679 CTTCCTGTACTGCTCCTCCTT 58.816 52.381 0.00 0.00 0.00 3.36
1298 1320 5.486063 TCCTCCTTCGCTCTCTAGTCTATAT 59.514 44.000 0.00 0.00 0.00 0.86
1299 1321 5.815740 CCTCCTTCGCTCTCTAGTCTATATC 59.184 48.000 0.00 0.00 0.00 1.63
1300 1322 6.351881 CCTCCTTCGCTCTCTAGTCTATATCT 60.352 46.154 0.00 0.00 0.00 1.98
1301 1323 6.636705 TCCTTCGCTCTCTAGTCTATATCTC 58.363 44.000 0.00 0.00 0.00 2.75
1302 1324 6.439375 TCCTTCGCTCTCTAGTCTATATCTCT 59.561 42.308 0.00 0.00 0.00 3.10
1303 1325 6.757010 CCTTCGCTCTCTAGTCTATATCTCTC 59.243 46.154 0.00 0.00 0.00 3.20
1304 1326 7.363880 CCTTCGCTCTCTAGTCTATATCTCTCT 60.364 44.444 0.00 0.00 0.00 3.10
1305 1327 7.096884 TCGCTCTCTAGTCTATATCTCTCTC 57.903 44.000 0.00 0.00 0.00 3.20
1306 1328 6.890268 TCGCTCTCTAGTCTATATCTCTCTCT 59.110 42.308 0.00 0.00 0.00 3.10
1307 1329 7.067129 TCGCTCTCTAGTCTATATCTCTCTCTC 59.933 44.444 0.00 0.00 0.00 3.20
1308 1330 7.067615 CGCTCTCTAGTCTATATCTCTCTCTCT 59.932 44.444 0.00 0.00 0.00 3.10
1309 1331 8.410141 GCTCTCTAGTCTATATCTCTCTCTCTC 58.590 44.444 0.00 0.00 0.00 3.20
1353 1375 2.506865 CTAGTGTACGTGCGAAGACAG 58.493 52.381 0.00 0.00 0.00 3.51
1763 1829 4.965119 CCACCTTTATAACCAACTCTGC 57.035 45.455 0.00 0.00 0.00 4.26
1875 1941 3.116174 AGTGATTTCCTCTTACCCTCCC 58.884 50.000 0.00 0.00 0.00 4.30
2208 2274 3.305064 CCTTTCCGATCGATCTCTTCTCC 60.305 52.174 22.43 0.00 0.00 3.71
2218 2284 3.653164 GATCTCTTCTCCCCCTTTCTCT 58.347 50.000 0.00 0.00 0.00 3.10
2239 2305 1.595093 AACCTTAACCGCCTGCATGC 61.595 55.000 11.82 11.82 0.00 4.06
2507 2582 2.708514 GTTTGTATGTATGCAGCAGCG 58.291 47.619 0.00 0.00 46.23 5.18
2514 2589 1.089481 GTATGCAGCAGCGGCAGTAA 61.089 55.000 24.69 10.66 45.68 2.24
2534 2609 0.669932 CAGCAGCGGCAGGATATCTC 60.670 60.000 12.44 0.00 44.61 2.75
2809 2884 3.753434 ACTGACTCCAGCTCCGCG 61.753 66.667 0.00 0.00 44.16 6.46
2882 2957 4.717313 CTGGGCAGCAGCAGCAGA 62.717 66.667 12.41 0.00 45.49 4.26
3024 3099 7.008901 ACGTAACAGTGTCAACGTTGATATATG 59.991 37.037 31.81 28.71 45.51 1.78
3102 3177 2.163010 AGCGTTTCAATGCATCCTCAAG 59.837 45.455 0.00 0.00 43.31 3.02
3103 3178 2.523015 CGTTTCAATGCATCCTCAAGC 58.477 47.619 0.00 0.00 0.00 4.01
3152 3228 0.949397 CTGTGCTTTGAGCTTGAGCA 59.051 50.000 13.50 13.50 42.97 4.26
3242 3320 6.774656 ACTGGGAAATGGCATATTTCTAGAAG 59.225 38.462 21.86 16.61 37.94 2.85
3341 3422 5.574830 GGCGACATCATAGTGATCTTATGTC 59.425 44.000 13.79 0.00 39.71 3.06
3497 3578 2.201921 AAGAGAGAGACGTGCAGGTA 57.798 50.000 12.81 0.00 0.00 3.08
3674 3755 4.381292 GGATCCACAAGAAAAGATGGCAAG 60.381 45.833 6.95 0.00 31.87 4.01
3864 3946 3.498397 AGGTGCAAAACAGTTACGATCAG 59.502 43.478 0.00 0.00 0.00 2.90
3865 3947 3.250040 GGTGCAAAACAGTTACGATCAGT 59.750 43.478 0.00 0.00 0.00 3.41
3985 4067 1.467920 TCAGCAGATCGAGCAAGAGA 58.532 50.000 2.38 0.00 0.00 3.10
4012 4094 2.045926 GGCGCTCACAGGTTCCAT 60.046 61.111 7.64 0.00 0.00 3.41
4030 4112 5.007385 TCCATTTCTCTAGAACCGCTAAC 57.993 43.478 0.00 0.00 33.13 2.34
4070 4152 2.752354 TGCCATATGCTGTAACGCTTTT 59.248 40.909 0.00 0.00 42.00 2.27
4072 4154 4.396478 TGCCATATGCTGTAACGCTTTTAA 59.604 37.500 0.00 0.00 42.00 1.52
4073 4155 5.067153 TGCCATATGCTGTAACGCTTTTAAT 59.933 36.000 0.00 0.00 42.00 1.40
4156 4238 1.982660 CATCTCATCCCTTGCAGCAT 58.017 50.000 0.00 0.00 0.00 3.79
4157 4239 2.307768 CATCTCATCCCTTGCAGCATT 58.692 47.619 0.00 0.00 0.00 3.56
4158 4240 3.483421 CATCTCATCCCTTGCAGCATTA 58.517 45.455 0.00 0.00 0.00 1.90
4159 4241 2.923121 TCTCATCCCTTGCAGCATTAC 58.077 47.619 0.00 0.00 0.00 1.89
4160 4242 2.239402 TCTCATCCCTTGCAGCATTACA 59.761 45.455 0.00 0.00 0.00 2.41
4161 4243 3.018856 CTCATCCCTTGCAGCATTACAA 58.981 45.455 0.00 0.00 0.00 2.41
4162 4244 3.634504 TCATCCCTTGCAGCATTACAAT 58.365 40.909 0.00 0.00 0.00 2.71
4173 4255 6.222389 TGCAGCATTACAATTTACAAGCTTT 58.778 32.000 0.00 0.00 0.00 3.51
4247 4329 3.845178 TGTGATGTTCGACATGGAGTAC 58.155 45.455 0.00 0.00 39.27 2.73
4510 4592 0.317479 AAGGTCTAGCGCGAAGTTGT 59.683 50.000 12.10 0.00 0.00 3.32
4515 4597 2.727798 GTCTAGCGCGAAGTTGTTACAA 59.272 45.455 12.10 0.00 0.00 2.41
4524 4606 4.788201 GCGAAGTTGTTACAAGAATGCACA 60.788 41.667 0.00 0.00 0.00 4.57
4554 4636 9.476202 GTGCTTTTAATTTATCTGACCTTTGTT 57.524 29.630 0.00 0.00 0.00 2.83
4568 4650 5.538053 TGACCTTTGTTTGATGATTAAGGCA 59.462 36.000 0.00 0.00 36.47 4.75
4588 4670 4.409570 GCAATGTTACATGCTGAGTCTTG 58.590 43.478 0.00 0.00 39.46 3.02
4589 4671 4.409570 CAATGTTACATGCTGAGTCTTGC 58.590 43.478 0.00 0.00 0.00 4.01
4590 4672 2.426522 TGTTACATGCTGAGTCTTGCC 58.573 47.619 0.00 0.00 0.00 4.52
4636 4722 1.136774 CAGCTTGATCCGTCGACGA 59.863 57.895 37.65 23.58 43.02 4.20
4677 4763 1.239296 GCAACCTGCAGCAGTCATCA 61.239 55.000 21.26 0.00 44.26 3.07
4683 4769 0.391263 TGCAGCAGTCATCAGAGCAG 60.391 55.000 0.00 0.00 0.00 4.24
4819 4905 2.098614 CTCTAGCTCTTGACAGGCTCA 58.901 52.381 0.00 0.00 37.50 4.26
4827 4913 2.092429 TCTTGACAGGCTCAACAACCTT 60.092 45.455 0.00 0.00 33.65 3.50
4888 4975 0.250467 AGTTCATGCACTCTGCCGTT 60.250 50.000 0.00 0.00 44.23 4.44
4921 5008 7.201574 CCATGTTCTTGCATGATTAACCATTTG 60.202 37.037 2.75 0.00 46.65 2.32
4945 5032 8.621532 TGCTGAACTTACAAAGAGAAATACAT 57.378 30.769 0.00 0.00 0.00 2.29
4979 5067 8.801715 TTTTCTGAACAATAATTCAACAGAGC 57.198 30.769 0.00 0.00 38.12 4.09
5101 5192 8.383619 CAGAATGTTGTCTAACTTTTCGGATAG 58.616 37.037 0.00 0.00 37.68 2.08
5114 5205 8.168790 ACTTTTCGGATAGATAGAAGGTACTC 57.831 38.462 0.00 0.00 38.49 2.59
5115 5206 7.231115 ACTTTTCGGATAGATAGAAGGTACTCC 59.769 40.741 0.00 0.00 38.49 3.85
5116 5207 5.176741 TCGGATAGATAGAAGGTACTCCC 57.823 47.826 0.00 0.00 38.49 4.30
5118 5209 5.045724 TCGGATAGATAGAAGGTACTCCCTC 60.046 48.000 0.00 0.00 45.47 4.30
5120 5211 6.184789 GGATAGATAGAAGGTACTCCCTCTG 58.815 48.000 0.00 0.00 45.47 3.35
5122 5213 5.475398 AGATAGAAGGTACTCCCTCTGTT 57.525 43.478 0.00 0.00 45.47 3.16
5123 5214 5.451354 AGATAGAAGGTACTCCCTCTGTTC 58.549 45.833 0.00 0.00 45.47 3.18
5124 5215 2.822697 AGAAGGTACTCCCTCTGTTCC 58.177 52.381 0.00 0.00 45.47 3.62
5125 5216 2.111972 AGAAGGTACTCCCTCTGTTCCA 59.888 50.000 0.00 0.00 45.47 3.53
5126 5217 2.239681 AGGTACTCCCTCTGTTCCAG 57.760 55.000 0.00 0.00 40.71 3.86
5127 5218 1.717077 AGGTACTCCCTCTGTTCCAGA 59.283 52.381 0.00 0.00 40.71 3.86
5128 5219 2.111972 AGGTACTCCCTCTGTTCCAGAA 59.888 50.000 0.00 0.00 40.71 3.02
5129 5220 3.108376 GGTACTCCCTCTGTTCCAGAAT 58.892 50.000 0.00 0.00 40.18 2.40
5130 5221 4.016479 AGGTACTCCCTCTGTTCCAGAATA 60.016 45.833 0.00 0.00 40.71 1.75
5131 5222 4.342665 GGTACTCCCTCTGTTCCAGAATAG 59.657 50.000 0.00 0.00 40.18 1.73
5132 5223 4.338795 ACTCCCTCTGTTCCAGAATAGA 57.661 45.455 6.67 6.67 40.18 1.98
5133 5224 4.889780 ACTCCCTCTGTTCCAGAATAGAT 58.110 43.478 7.23 0.00 40.18 1.98
5134 5225 4.653341 ACTCCCTCTGTTCCAGAATAGATG 59.347 45.833 7.23 5.21 40.18 2.90
5135 5226 4.883759 TCCCTCTGTTCCAGAATAGATGA 58.116 43.478 7.23 5.28 40.18 2.92
5136 5227 4.651503 TCCCTCTGTTCCAGAATAGATGAC 59.348 45.833 7.23 0.00 40.18 3.06
5137 5228 4.653341 CCCTCTGTTCCAGAATAGATGACT 59.347 45.833 7.23 0.00 40.18 3.41
5138 5229 5.221422 CCCTCTGTTCCAGAATAGATGACTC 60.221 48.000 7.23 0.00 40.18 3.36
5139 5230 5.362143 CCTCTGTTCCAGAATAGATGACTCA 59.638 44.000 7.23 0.00 40.18 3.41
5140 5231 6.127225 CCTCTGTTCCAGAATAGATGACTCAA 60.127 42.308 7.23 0.00 40.18 3.02
5141 5232 6.634805 TCTGTTCCAGAATAGATGACTCAAC 58.365 40.000 3.03 0.00 37.57 3.18
5142 5233 6.438741 TCTGTTCCAGAATAGATGACTCAACT 59.561 38.462 3.03 0.00 37.57 3.16
5143 5234 7.009179 TGTTCCAGAATAGATGACTCAACTT 57.991 36.000 0.00 0.00 0.00 2.66
5144 5235 7.453393 TGTTCCAGAATAGATGACTCAACTTT 58.547 34.615 0.00 0.00 0.00 2.66
5145 5236 7.388776 TGTTCCAGAATAGATGACTCAACTTTG 59.611 37.037 0.00 0.00 0.00 2.77
5146 5237 7.009179 TCCAGAATAGATGACTCAACTTTGT 57.991 36.000 0.00 0.00 0.00 2.83
5147 5238 8.134202 TCCAGAATAGATGACTCAACTTTGTA 57.866 34.615 0.00 0.00 0.00 2.41
5148 5239 8.035394 TCCAGAATAGATGACTCAACTTTGTAC 58.965 37.037 0.00 0.00 0.00 2.90
5149 5240 8.037758 CCAGAATAGATGACTCAACTTTGTACT 58.962 37.037 0.00 0.00 0.00 2.73
5183 5274 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
5184 5275 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
5185 5276 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
5186 5277 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
5187 5278 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
5188 5279 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
5189 5280 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
5190 5281 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
5191 5282 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5192 5283 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5193 5284 4.226394 TCATCTATTTTGGAACGGAGGGAA 59.774 41.667 0.00 0.00 0.00 3.97
5224 5315 7.728847 TGATATATAAGATGTGGTTGTGCAC 57.271 36.000 10.75 10.75 0.00 4.57
5366 5457 5.796424 ATTTTGAGCAATTGGTTGAGTCT 57.204 34.783 12.13 0.00 37.53 3.24
5486 5579 5.639506 CAGAATATGACGTTCACCTTCTTGT 59.360 40.000 0.00 0.00 31.83 3.16
5538 5632 1.237285 ATTTCTGGCCACGTCTGTGC 61.237 55.000 0.00 0.00 45.04 4.57
5573 5667 3.369052 CCGACCTATCTTTGCTGGTTGTA 60.369 47.826 0.00 0.00 33.32 2.41
5580 5697 4.150897 TCTTTGCTGGTTGTAGAACAGT 57.849 40.909 5.00 0.00 33.27 3.55
5626 5747 3.699779 TGTTGCACTTGTAAAATCGCA 57.300 38.095 0.00 0.00 0.00 5.10
5651 5779 5.487488 AGGGTTCAGTCCATGAGTTGTAATA 59.513 40.000 0.00 0.00 39.68 0.98
5760 5889 6.696148 ACGAGATAGTAGAAAAATAAGTGGCG 59.304 38.462 0.00 0.00 0.00 5.69
5841 5970 5.371526 TCCAATTGCTCCACTTGAGATATC 58.628 41.667 0.00 0.00 44.42 1.63
5846 5975 3.576118 TGCTCCACTTGAGATATCTAGGC 59.424 47.826 4.89 0.51 44.42 3.93
5847 5976 3.056179 GCTCCACTTGAGATATCTAGGCC 60.056 52.174 4.89 0.00 44.42 5.19
5917 6046 6.294508 GCAGTTTAGACATCCAAAGGCTTTAA 60.295 38.462 12.95 4.41 0.00 1.52
6028 6164 0.905357 GGCATCACACACCCTAGAGT 59.095 55.000 0.00 0.00 0.00 3.24
6100 6236 2.028839 CAGGAACATTGGCTTTGCATCA 60.029 45.455 0.00 0.00 0.00 3.07
6101 6237 2.835764 AGGAACATTGGCTTTGCATCAT 59.164 40.909 0.00 0.00 0.00 2.45
6102 6238 3.118884 AGGAACATTGGCTTTGCATCATC 60.119 43.478 0.00 0.00 0.00 2.92
6107 6243 4.020928 ACATTGGCTTTGCATCATCTTTCA 60.021 37.500 0.00 0.00 0.00 2.69
6179 6319 5.778161 TCATGTAGATAGTGCAACAAACG 57.222 39.130 0.00 0.00 41.43 3.60
6190 6332 3.978855 GTGCAACAAACGTTAGATTTCCC 59.021 43.478 0.00 0.00 36.32 3.97
6193 6335 4.083908 GCAACAAACGTTAGATTTCCCGTA 60.084 41.667 0.00 0.00 32.49 4.02
6202 6344 0.393402 GATTTCCCGTAAGCCCGGTT 60.393 55.000 0.00 0.00 46.66 4.44
6224 6366 1.877443 CCAGTTAACCCGTTTCACTGG 59.123 52.381 17.63 17.63 41.91 4.00
6265 6407 0.537143 TGCAAGTGAAGGCCGACAAT 60.537 50.000 0.00 0.00 0.00 2.71
6277 6419 1.638133 CCGACAATCTGAGACAGCAG 58.362 55.000 0.00 0.00 37.24 4.24
6391 6533 1.817099 CTCCATCTGGGCTTCACGC 60.817 63.158 0.00 0.00 36.21 5.34
6408 6550 1.214589 GCCCTCGCGAGTAAGACAA 59.785 57.895 32.41 0.00 0.00 3.18
6434 6576 1.750572 CGATCTCGCTCAGCAACAGC 61.751 60.000 0.00 0.00 0.00 4.40
6469 6612 1.065928 CATCTCACCCTCGGCGTAC 59.934 63.158 6.85 0.00 0.00 3.67
6475 6618 2.045131 ACCCTCGGCGTACACTCTC 61.045 63.158 6.85 0.00 0.00 3.20
6478 6621 1.025113 CCTCGGCGTACACTCTCTCA 61.025 60.000 6.85 0.00 0.00 3.27
6535 6678 2.965831 TCTACAGCAACAGAGTTCCAGT 59.034 45.455 0.00 0.00 0.00 4.00
6538 6681 0.034059 AGCAACAGAGTTCCAGTCCG 59.966 55.000 0.00 0.00 0.00 4.79
6546 6689 0.393077 AGTTCCAGTCCGTTCACCAG 59.607 55.000 0.00 0.00 0.00 4.00
6642 6788 2.540361 GCAGCATTGTTCCATCATCGTC 60.540 50.000 0.00 0.00 0.00 4.20
6755 6906 1.293924 CTCATCGCCTGTGATGTTCC 58.706 55.000 17.53 0.00 44.82 3.62
6826 6977 1.295423 GGTGCAAAGCGTAGAGGGA 59.705 57.895 0.00 0.00 0.00 4.20
6878 7029 1.585297 CGTGGACGTGGGTTAAGTTT 58.415 50.000 0.00 0.00 34.11 2.66
6879 7030 1.262151 CGTGGACGTGGGTTAAGTTTG 59.738 52.381 0.00 0.00 34.11 2.93
6880 7031 2.291365 GTGGACGTGGGTTAAGTTTGT 58.709 47.619 0.00 0.00 0.00 2.83
6881 7032 3.465871 GTGGACGTGGGTTAAGTTTGTA 58.534 45.455 0.00 0.00 0.00 2.41
6882 7033 4.067192 GTGGACGTGGGTTAAGTTTGTAT 58.933 43.478 0.00 0.00 0.00 2.29
6883 7034 4.066490 TGGACGTGGGTTAAGTTTGTATG 58.934 43.478 0.00 0.00 0.00 2.39
6937 7090 2.122783 TGGGCGGAGGAATAAACAAG 57.877 50.000 0.00 0.00 0.00 3.16
6951 7104 8.432805 AGGAATAAACAAGTAATCTGATCCGAT 58.567 33.333 0.00 0.00 0.00 4.18
6972 7125 0.741915 ATTTGCCAAAACGACACGGT 59.258 45.000 0.00 0.00 0.00 4.83
6987 7140 0.108329 ACGGTCAGATAAACCAGCCG 60.108 55.000 0.00 0.00 42.86 5.52
7008 7161 3.937079 CGTTACCTAATTTGTCCCCTCAC 59.063 47.826 0.00 0.00 0.00 3.51
7009 7162 4.323257 CGTTACCTAATTTGTCCCCTCACT 60.323 45.833 0.00 0.00 0.00 3.41
7011 7164 6.574859 CGTTACCTAATTTGTCCCCTCACTAA 60.575 42.308 0.00 0.00 0.00 2.24
7109 7262 7.953493 ACAAAATTATCCGGGGATTATGGTTAT 59.047 33.333 5.38 0.00 36.17 1.89
7120 7273 6.043127 GGGGATTATGGTTATGCCTGAAAAAT 59.957 38.462 0.00 0.00 38.35 1.82
7128 7281 1.624336 TGCCTGAAAAATGAGCTGCT 58.376 45.000 0.00 0.00 0.00 4.24
7136 7289 4.586001 TGAAAAATGAGCTGCTCCTTTTCT 59.414 37.500 35.78 27.53 37.34 2.52
7137 7290 4.516365 AAAATGAGCTGCTCCTTTTCTG 57.484 40.909 28.42 0.00 34.82 3.02
7138 7291 2.875094 ATGAGCTGCTCCTTTTCTGT 57.125 45.000 25.61 0.48 0.00 3.41
7139 7292 3.988976 ATGAGCTGCTCCTTTTCTGTA 57.011 42.857 25.61 5.14 0.00 2.74
7140 7293 3.769739 TGAGCTGCTCCTTTTCTGTAA 57.230 42.857 25.61 1.03 0.00 2.41
7141 7294 4.085357 TGAGCTGCTCCTTTTCTGTAAA 57.915 40.909 25.61 0.49 0.00 2.01
7161 7314 4.773323 AAGGTGCTAGAAAACATTGCTC 57.227 40.909 0.00 0.00 0.00 4.26
7197 7350 3.060000 TGCATGCCAGCTCTGTGC 61.060 61.111 16.68 4.59 43.29 4.57
7235 7388 4.452114 TGTATCAAGTGCAGCTACTGTTTG 59.548 41.667 0.00 0.60 33.43 2.93
7239 7399 1.941072 TGCAGCTACTGTTTGCACG 59.059 52.632 9.33 0.00 42.41 5.34
7271 7431 3.674528 CACCTGATGGATGTAGCTAGG 57.325 52.381 0.00 0.00 37.04 3.02
7272 7432 1.974236 ACCTGATGGATGTAGCTAGGC 59.026 52.381 0.00 0.00 37.04 3.93
7273 7433 1.067283 CCTGATGGATGTAGCTAGGCG 60.067 57.143 0.00 0.00 34.57 5.52
7274 7434 1.615883 CTGATGGATGTAGCTAGGCGT 59.384 52.381 0.00 0.00 0.00 5.68
7276 7436 0.034059 ATGGATGTAGCTAGGCGTGC 59.966 55.000 0.00 0.00 0.00 5.34
7277 7437 1.043116 TGGATGTAGCTAGGCGTGCT 61.043 55.000 11.53 11.53 43.79 4.40
7278 7438 0.598680 GGATGTAGCTAGGCGTGCTG 60.599 60.000 15.50 0.00 41.32 4.41
7279 7439 1.218230 GATGTAGCTAGGCGTGCTGC 61.218 60.000 15.50 14.52 41.32 5.25
7333 7496 1.888391 GCAGAACAAAGCTTAGGGGCT 60.888 52.381 0.00 0.00 45.30 5.19
7340 7503 2.932404 AGCTTAGGGGCTTACTCCC 58.068 57.895 0.00 0.00 45.80 4.30
7346 7509 2.203209 GGGCTTACTCCCGGCATG 60.203 66.667 0.00 0.00 36.38 4.06
7347 7510 2.203209 GGCTTACTCCCGGCATGG 60.203 66.667 0.00 0.00 37.55 3.66
7348 7511 2.590092 GCTTACTCCCGGCATGGT 59.410 61.111 0.00 0.00 35.15 3.55
7349 7512 1.523938 GCTTACTCCCGGCATGGTC 60.524 63.158 0.00 0.00 35.15 4.02
7350 7513 1.972660 GCTTACTCCCGGCATGGTCT 61.973 60.000 0.00 0.00 35.15 3.85
7351 7514 0.541863 CTTACTCCCGGCATGGTCTT 59.458 55.000 0.00 0.00 35.15 3.01
7352 7515 0.251916 TTACTCCCGGCATGGTCTTG 59.748 55.000 0.00 0.00 35.15 3.02
7353 7516 0.616395 TACTCCCGGCATGGTCTTGA 60.616 55.000 0.00 0.00 35.15 3.02
7354 7517 1.274703 ACTCCCGGCATGGTCTTGAT 61.275 55.000 0.00 0.00 35.15 2.57
7355 7518 0.533755 CTCCCGGCATGGTCTTGATC 60.534 60.000 0.00 0.00 35.15 2.92
7356 7519 1.526917 CCCGGCATGGTCTTGATCC 60.527 63.158 0.00 0.00 35.15 3.36
7357 7520 1.224315 CCGGCATGGTCTTGATCCA 59.776 57.895 0.00 0.00 39.41 3.41
7358 7521 0.816825 CCGGCATGGTCTTGATCCAG 60.817 60.000 0.00 0.00 38.42 3.86
7359 7522 0.816825 CGGCATGGTCTTGATCCAGG 60.817 60.000 0.00 0.00 38.42 4.45
7360 7523 0.466922 GGCATGGTCTTGATCCAGGG 60.467 60.000 0.00 0.00 38.42 4.45
7361 7524 0.466922 GCATGGTCTTGATCCAGGGG 60.467 60.000 0.00 0.00 38.42 4.79
7362 7525 0.184451 CATGGTCTTGATCCAGGGGG 59.816 60.000 0.00 0.00 38.42 5.40
7376 7539 4.467084 GGGGGCGCTCGATGTGAA 62.467 66.667 7.64 0.00 0.00 3.18
7377 7540 3.195698 GGGGCGCTCGATGTGAAC 61.196 66.667 7.64 0.00 0.00 3.18
7378 7541 3.195698 GGGCGCTCGATGTGAACC 61.196 66.667 7.64 0.00 0.00 3.62
7379 7542 2.125512 GGCGCTCGATGTGAACCT 60.126 61.111 7.64 0.00 0.00 3.50
7380 7543 2.456119 GGCGCTCGATGTGAACCTG 61.456 63.158 7.64 0.00 0.00 4.00
7381 7544 3.084579 CGCTCGATGTGAACCTGC 58.915 61.111 0.00 0.00 0.00 4.85
7382 7545 2.792290 CGCTCGATGTGAACCTGCG 61.792 63.158 0.00 0.00 36.19 5.18
7383 7546 2.456119 GCTCGATGTGAACCTGCGG 61.456 63.158 0.00 0.00 0.00 5.69
7384 7547 1.811266 CTCGATGTGAACCTGCGGG 60.811 63.158 11.02 11.02 38.88 6.13
7385 7548 2.819595 CGATGTGAACCTGCGGGG 60.820 66.667 18.00 5.11 41.89 5.73
7386 7549 2.668632 GATGTGAACCTGCGGGGA 59.331 61.111 18.00 0.00 38.76 4.81
7387 7550 1.002624 GATGTGAACCTGCGGGGAA 60.003 57.895 18.00 0.00 38.76 3.97
7388 7551 0.608035 GATGTGAACCTGCGGGGAAA 60.608 55.000 18.00 0.00 38.76 3.13
7389 7552 0.609131 ATGTGAACCTGCGGGGAAAG 60.609 55.000 18.00 0.00 38.76 2.62
7390 7553 1.971695 GTGAACCTGCGGGGAAAGG 60.972 63.158 18.00 0.00 39.65 3.11
7391 7554 3.062466 GAACCTGCGGGGAAAGGC 61.062 66.667 18.00 0.00 37.03 4.35
7402 7565 4.842091 GAAAGGCGCGGCATGCTG 62.842 66.667 34.94 22.66 43.27 4.41
7407 7570 4.107051 GCGCGGCATGCTGAAACT 62.107 61.111 30.67 0.00 43.27 2.66
7408 7571 2.099062 CGCGGCATGCTGAAACTC 59.901 61.111 30.67 10.76 43.27 3.01
7409 7572 2.099062 GCGGCATGCTGAAACTCG 59.901 61.111 30.67 17.53 41.73 4.18
7410 7573 2.099062 CGGCATGCTGAAACTCGC 59.901 61.111 22.55 0.00 0.00 5.03
7411 7574 2.099062 GGCATGCTGAAACTCGCG 59.901 61.111 18.92 0.00 0.00 5.87
7412 7575 2.680913 GGCATGCTGAAACTCGCGT 61.681 57.895 18.92 0.00 0.00 6.01
7413 7576 1.225854 GCATGCTGAAACTCGCGTC 60.226 57.895 11.37 0.00 0.00 5.19
7414 7577 1.900585 GCATGCTGAAACTCGCGTCA 61.901 55.000 11.37 0.65 0.00 4.35
7415 7578 0.512518 CATGCTGAAACTCGCGTCAA 59.487 50.000 5.77 0.00 0.00 3.18
7416 7579 0.792640 ATGCTGAAACTCGCGTCAAG 59.207 50.000 5.77 0.00 0.00 3.02
7417 7580 0.529773 TGCTGAAACTCGCGTCAAGT 60.530 50.000 5.77 0.00 0.00 3.16
7418 7581 0.582005 GCTGAAACTCGCGTCAAGTT 59.418 50.000 5.77 5.85 38.59 2.66
7419 7582 1.397315 GCTGAAACTCGCGTCAAGTTC 60.397 52.381 11.53 7.70 35.96 3.01
7420 7583 1.858458 CTGAAACTCGCGTCAAGTTCA 59.142 47.619 11.53 11.21 35.96 3.18
7421 7584 1.858458 TGAAACTCGCGTCAAGTTCAG 59.142 47.619 11.53 0.00 35.96 3.02
7422 7585 2.124903 GAAACTCGCGTCAAGTTCAGA 58.875 47.619 11.53 0.00 35.96 3.27
7423 7586 2.440539 AACTCGCGTCAAGTTCAGAT 57.559 45.000 5.77 0.00 31.36 2.90
7424 7587 1.983972 ACTCGCGTCAAGTTCAGATC 58.016 50.000 5.77 0.00 0.00 2.75
7425 7588 1.272781 CTCGCGTCAAGTTCAGATCC 58.727 55.000 5.77 0.00 0.00 3.36
7426 7589 0.456142 TCGCGTCAAGTTCAGATCCG 60.456 55.000 5.77 0.00 0.00 4.18
7427 7590 1.413767 CGCGTCAAGTTCAGATCCGG 61.414 60.000 0.00 0.00 0.00 5.14
7428 7591 0.108804 GCGTCAAGTTCAGATCCGGA 60.109 55.000 6.61 6.61 0.00 5.14
7429 7592 1.914634 CGTCAAGTTCAGATCCGGAG 58.085 55.000 11.34 0.00 0.00 4.63
7430 7593 1.472878 CGTCAAGTTCAGATCCGGAGA 59.527 52.381 11.34 0.00 0.00 3.71
7431 7594 2.094700 CGTCAAGTTCAGATCCGGAGAA 60.095 50.000 11.34 5.28 0.00 2.87
7432 7595 3.254892 GTCAAGTTCAGATCCGGAGAAC 58.745 50.000 21.54 21.54 0.00 3.01
7433 7596 2.897326 TCAAGTTCAGATCCGGAGAACA 59.103 45.455 27.39 11.73 0.00 3.18
7434 7597 3.323691 TCAAGTTCAGATCCGGAGAACAA 59.676 43.478 27.39 15.08 0.00 2.83
7435 7598 4.065088 CAAGTTCAGATCCGGAGAACAAA 58.935 43.478 27.39 10.36 0.00 2.83
7436 7599 3.665190 AGTTCAGATCCGGAGAACAAAC 58.335 45.455 27.39 19.04 0.00 2.93
7437 7600 2.742589 GTTCAGATCCGGAGAACAAACC 59.257 50.000 23.24 2.94 0.00 3.27
7438 7601 1.278127 TCAGATCCGGAGAACAAACCC 59.722 52.381 11.34 0.00 0.00 4.11
7439 7602 0.618981 AGATCCGGAGAACAAACCCC 59.381 55.000 11.34 0.00 0.00 4.95
7440 7603 0.743345 GATCCGGAGAACAAACCCCG 60.743 60.000 11.34 0.00 41.47 5.73
7441 7604 2.814913 ATCCGGAGAACAAACCCCGC 62.815 60.000 11.34 0.00 40.56 6.13
7442 7605 2.032071 CGGAGAACAAACCCCGCT 59.968 61.111 0.00 0.00 35.29 5.52
7443 7606 1.294138 CGGAGAACAAACCCCGCTA 59.706 57.895 0.00 0.00 35.29 4.26
7444 7607 0.320946 CGGAGAACAAACCCCGCTAA 60.321 55.000 0.00 0.00 35.29 3.09
7445 7608 1.878948 CGGAGAACAAACCCCGCTAAA 60.879 52.381 0.00 0.00 35.29 1.85
7446 7609 2.232399 GGAGAACAAACCCCGCTAAAA 58.768 47.619 0.00 0.00 0.00 1.52
7447 7610 2.624364 GGAGAACAAACCCCGCTAAAAA 59.376 45.455 0.00 0.00 0.00 1.94
7448 7611 3.305131 GGAGAACAAACCCCGCTAAAAAG 60.305 47.826 0.00 0.00 0.00 2.27
7449 7612 3.558033 AGAACAAACCCCGCTAAAAAGA 58.442 40.909 0.00 0.00 0.00 2.52
7450 7613 3.317149 AGAACAAACCCCGCTAAAAAGAC 59.683 43.478 0.00 0.00 0.00 3.01
7451 7614 2.657143 ACAAACCCCGCTAAAAAGACA 58.343 42.857 0.00 0.00 0.00 3.41
7452 7615 2.359848 ACAAACCCCGCTAAAAAGACAC 59.640 45.455 0.00 0.00 0.00 3.67
7453 7616 2.351706 AACCCCGCTAAAAAGACACA 57.648 45.000 0.00 0.00 0.00 3.72
7454 7617 1.892209 ACCCCGCTAAAAAGACACAG 58.108 50.000 0.00 0.00 0.00 3.66
7455 7618 1.418637 ACCCCGCTAAAAAGACACAGA 59.581 47.619 0.00 0.00 0.00 3.41
7456 7619 2.158726 ACCCCGCTAAAAAGACACAGAA 60.159 45.455 0.00 0.00 0.00 3.02
7457 7620 2.882137 CCCCGCTAAAAAGACACAGAAA 59.118 45.455 0.00 0.00 0.00 2.52
7458 7621 3.316868 CCCCGCTAAAAAGACACAGAAAA 59.683 43.478 0.00 0.00 0.00 2.29
7459 7622 4.537015 CCCGCTAAAAAGACACAGAAAAG 58.463 43.478 0.00 0.00 0.00 2.27
7460 7623 3.975035 CCGCTAAAAAGACACAGAAAAGC 59.025 43.478 0.00 0.00 0.00 3.51
7461 7624 3.975035 CGCTAAAAAGACACAGAAAAGCC 59.025 43.478 0.00 0.00 0.00 4.35
7462 7625 4.261197 CGCTAAAAAGACACAGAAAAGCCT 60.261 41.667 0.00 0.00 0.00 4.58
7463 7626 5.592054 GCTAAAAAGACACAGAAAAGCCTT 58.408 37.500 0.00 0.00 0.00 4.35
7464 7627 6.042777 GCTAAAAAGACACAGAAAAGCCTTT 58.957 36.000 0.00 0.00 0.00 3.11
7465 7628 6.535150 GCTAAAAAGACACAGAAAAGCCTTTT 59.465 34.615 1.18 1.18 35.96 2.27
7466 7629 7.064609 GCTAAAAAGACACAGAAAAGCCTTTTT 59.935 33.333 3.56 0.00 42.64 1.94
7480 7643 8.969260 AAAAGCCTTTTTCAGATCAGAATTTT 57.031 26.923 0.93 2.33 30.85 1.82
7481 7644 8.969260 AAAGCCTTTTTCAGATCAGAATTTTT 57.031 26.923 0.93 0.00 0.00 1.94
7496 7659 4.943373 TTTTTCCCTCCTGCACCC 57.057 55.556 0.00 0.00 0.00 4.61
7497 7660 1.228429 TTTTTCCCTCCTGCACCCG 60.228 57.895 0.00 0.00 0.00 5.28
7498 7661 2.706952 TTTTTCCCTCCTGCACCCGG 62.707 60.000 0.00 0.00 0.00 5.73
7499 7662 4.649705 TTCCCTCCTGCACCCGGA 62.650 66.667 0.73 0.00 0.00 5.14
7502 7665 3.775654 CCTCCTGCACCCGGACTC 61.776 72.222 0.73 0.00 0.00 3.36
7503 7666 3.775654 CTCCTGCACCCGGACTCC 61.776 72.222 0.73 0.00 0.00 3.85
7504 7667 4.631740 TCCTGCACCCGGACTCCA 62.632 66.667 0.73 0.00 0.00 3.86
7505 7668 4.394712 CCTGCACCCGGACTCCAC 62.395 72.222 0.73 0.00 0.00 4.02
7506 7669 3.625897 CTGCACCCGGACTCCACA 61.626 66.667 0.73 0.00 0.00 4.17
7507 7670 3.164977 TGCACCCGGACTCCACAA 61.165 61.111 0.73 0.00 0.00 3.33
7508 7671 2.112297 GCACCCGGACTCCACAAA 59.888 61.111 0.73 0.00 0.00 2.83
7509 7672 1.966451 GCACCCGGACTCCACAAAG 60.966 63.158 0.73 0.00 0.00 2.77
7510 7673 1.302511 CACCCGGACTCCACAAAGG 60.303 63.158 0.73 0.00 39.47 3.11
7511 7674 1.768888 ACCCGGACTCCACAAAGGT 60.769 57.895 0.73 0.00 39.02 3.50
7512 7675 1.302511 CCCGGACTCCACAAAGGTG 60.303 63.158 0.73 0.00 44.85 4.00
7524 7687 3.146104 ACAAAGGTGAGAACTCATGGG 57.854 47.619 7.77 0.00 42.18 4.00
7525 7688 1.815003 CAAAGGTGAGAACTCATGGGC 59.185 52.381 7.77 0.00 42.18 5.36
7526 7689 1.366319 AAGGTGAGAACTCATGGGCT 58.634 50.000 7.77 0.00 42.18 5.19
7527 7690 1.366319 AGGTGAGAACTCATGGGCTT 58.634 50.000 7.77 0.00 42.18 4.35
7528 7691 1.004044 AGGTGAGAACTCATGGGCTTG 59.996 52.381 7.77 0.00 42.18 4.01
7529 7692 0.807496 GTGAGAACTCATGGGCTTGC 59.193 55.000 7.77 0.00 42.18 4.01
7530 7693 0.322816 TGAGAACTCATGGGCTTGCC 60.323 55.000 2.49 2.49 34.14 4.52
7531 7694 0.034670 GAGAACTCATGGGCTTGCCT 60.035 55.000 11.71 0.00 0.00 4.75
7532 7695 0.407139 AGAACTCATGGGCTTGCCTT 59.593 50.000 11.71 0.00 0.00 4.35
7533 7696 0.529378 GAACTCATGGGCTTGCCTTG 59.471 55.000 11.71 9.67 0.00 3.61
7534 7697 1.538687 AACTCATGGGCTTGCCTTGC 61.539 55.000 11.71 0.00 0.00 4.01
7535 7698 1.681327 CTCATGGGCTTGCCTTGCT 60.681 57.895 11.71 0.00 0.00 3.91
7536 7699 1.945354 CTCATGGGCTTGCCTTGCTG 61.945 60.000 11.71 4.65 0.00 4.41
7537 7700 2.682494 ATGGGCTTGCCTTGCTGG 60.682 61.111 11.71 0.00 39.35 4.85
7546 7709 3.298958 CCTTGCTGGCCGAGTCTA 58.701 61.111 0.00 0.00 0.00 2.59
7547 7710 1.596934 CCTTGCTGGCCGAGTCTAA 59.403 57.895 0.00 0.00 0.00 2.10
7548 7711 0.179000 CCTTGCTGGCCGAGTCTAAT 59.821 55.000 0.00 0.00 0.00 1.73
7549 7712 1.576356 CTTGCTGGCCGAGTCTAATC 58.424 55.000 0.00 0.00 0.00 1.75
7550 7713 1.137872 CTTGCTGGCCGAGTCTAATCT 59.862 52.381 0.00 0.00 0.00 2.40
7551 7714 2.067365 TGCTGGCCGAGTCTAATCTA 57.933 50.000 0.00 0.00 0.00 1.98
7552 7715 2.384828 TGCTGGCCGAGTCTAATCTAA 58.615 47.619 0.00 0.00 0.00 2.10
7553 7716 2.100916 TGCTGGCCGAGTCTAATCTAAC 59.899 50.000 0.00 0.00 0.00 2.34
7554 7717 2.362717 GCTGGCCGAGTCTAATCTAACT 59.637 50.000 0.00 0.00 0.00 2.24
7555 7718 3.568853 GCTGGCCGAGTCTAATCTAACTA 59.431 47.826 0.00 0.00 0.00 2.24
7556 7719 4.557097 GCTGGCCGAGTCTAATCTAACTAC 60.557 50.000 0.00 0.00 0.00 2.73
7557 7720 3.887716 TGGCCGAGTCTAATCTAACTACC 59.112 47.826 0.00 0.00 0.00 3.18
7558 7721 4.143543 GGCCGAGTCTAATCTAACTACCT 58.856 47.826 0.00 0.00 0.00 3.08
7559 7722 5.163163 TGGCCGAGTCTAATCTAACTACCTA 60.163 44.000 0.00 0.00 0.00 3.08
7560 7723 5.767168 GGCCGAGTCTAATCTAACTACCTAA 59.233 44.000 0.00 0.00 0.00 2.69
7561 7724 6.264067 GGCCGAGTCTAATCTAACTACCTAAA 59.736 42.308 0.00 0.00 0.00 1.85
7562 7725 7.138081 GCCGAGTCTAATCTAACTACCTAAAC 58.862 42.308 0.00 0.00 0.00 2.01
7563 7726 7.351223 CCGAGTCTAATCTAACTACCTAAACG 58.649 42.308 0.00 0.00 0.00 3.60
7564 7727 7.351223 CGAGTCTAATCTAACTACCTAAACGG 58.649 42.308 0.00 0.00 39.35 4.44
7565 7728 7.036996 AGTCTAATCTAACTACCTAAACGGC 57.963 40.000 0.00 0.00 35.61 5.68
7566 7729 6.040278 AGTCTAATCTAACTACCTAAACGGCC 59.960 42.308 0.00 0.00 35.61 6.13
7567 7730 6.040278 GTCTAATCTAACTACCTAAACGGCCT 59.960 42.308 0.00 0.00 35.61 5.19
7568 7731 4.667519 ATCTAACTACCTAAACGGCCTG 57.332 45.455 0.00 0.00 35.61 4.85
7569 7732 3.700538 TCTAACTACCTAAACGGCCTGA 58.299 45.455 0.00 0.00 35.61 3.86
7570 7733 4.088634 TCTAACTACCTAAACGGCCTGAA 58.911 43.478 0.00 0.00 35.61 3.02
7571 7734 3.994931 AACTACCTAAACGGCCTGAAT 57.005 42.857 0.00 0.00 35.61 2.57
7572 7735 3.994931 ACTACCTAAACGGCCTGAATT 57.005 42.857 0.00 0.00 35.61 2.17
7573 7736 3.606687 ACTACCTAAACGGCCTGAATTG 58.393 45.455 0.00 0.00 35.61 2.32
7574 7737 1.173913 ACCTAAACGGCCTGAATTGC 58.826 50.000 0.00 0.00 35.61 3.56
7575 7738 0.455815 CCTAAACGGCCTGAATTGCC 59.544 55.000 0.00 0.00 45.70 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.034432 TGCTTGAAGCGCAAAGATGAAA 59.966 40.909 11.47 0.00 46.26 2.69
75 76 8.571336 CAAAGAACAATCAAGTTAGGAACAGAT 58.429 33.333 0.00 0.00 32.22 2.90
167 168 2.927553 AGATCATTTTGCGTGCCTTC 57.072 45.000 0.00 0.00 0.00 3.46
177 178 1.566231 AGAGGCCGGGAAGATCATTTT 59.434 47.619 2.18 0.00 0.00 1.82
343 344 8.293699 AGAAAGTTGCCCCTTAATTAATACTG 57.706 34.615 0.00 0.00 0.00 2.74
390 391 6.864475 GCAAATGCTTATGGATCGCTATCGA 61.864 44.000 0.00 0.00 42.88 3.59
456 457 7.365563 GCCAAATACTAAAATGATTTCCCCCTT 60.366 37.037 0.00 0.00 0.00 3.95
458 459 6.288294 GCCAAATACTAAAATGATTTCCCCC 58.712 40.000 0.00 0.00 0.00 5.40
607 608 7.970614 ACAAGACTTCTTTTTCTAAGTGCAAAG 59.029 33.333 0.00 0.00 36.10 2.77
668 669 5.879223 GCAAAAAGATCATTGAGGAGAGAGA 59.121 40.000 9.33 0.00 0.00 3.10
749 750 0.320946 GCCCCGTAACTGTAACAGCA 60.321 55.000 0.00 0.00 34.37 4.41
813 823 3.685835 CGGTGAGAGGAGAGTGGAGATAA 60.686 52.174 0.00 0.00 0.00 1.75
821 831 0.988832 AGAGACGGTGAGAGGAGAGT 59.011 55.000 0.00 0.00 0.00 3.24
825 835 1.281419 AGAGAGAGACGGTGAGAGGA 58.719 55.000 0.00 0.00 0.00 3.71
833 843 1.021202 CACAGGCTAGAGAGAGACGG 58.979 60.000 0.00 0.00 0.00 4.79
853 865 5.445673 CGAGCATGTGTCTCTTTTCAGATTC 60.446 44.000 0.00 0.00 0.00 2.52
1183 1205 1.474478 ACAGCTCTACCACGATCACTG 59.526 52.381 0.00 0.00 0.00 3.66
1281 1303 6.890268 AGAGAGAGATATAGACTAGAGAGCGA 59.110 42.308 0.00 0.00 0.00 4.93
1298 1320 3.133542 CAGCAGAGAGAGAGAGAGAGAGA 59.866 52.174 0.00 0.00 0.00 3.10
1299 1321 3.118482 ACAGCAGAGAGAGAGAGAGAGAG 60.118 52.174 0.00 0.00 0.00 3.20
1300 1322 2.840038 ACAGCAGAGAGAGAGAGAGAGA 59.160 50.000 0.00 0.00 0.00 3.10
1301 1323 3.272574 ACAGCAGAGAGAGAGAGAGAG 57.727 52.381 0.00 0.00 0.00 3.20
1302 1324 3.719268 AACAGCAGAGAGAGAGAGAGA 57.281 47.619 0.00 0.00 0.00 3.10
1303 1325 4.012374 AGAAACAGCAGAGAGAGAGAGAG 58.988 47.826 0.00 0.00 0.00 3.20
1304 1326 4.032960 AGAAACAGCAGAGAGAGAGAGA 57.967 45.455 0.00 0.00 0.00 3.10
1305 1327 4.218200 TGAAGAAACAGCAGAGAGAGAGAG 59.782 45.833 0.00 0.00 0.00 3.20
1306 1328 4.148079 TGAAGAAACAGCAGAGAGAGAGA 58.852 43.478 0.00 0.00 0.00 3.10
1307 1329 4.517952 TGAAGAAACAGCAGAGAGAGAG 57.482 45.455 0.00 0.00 0.00 3.20
1308 1330 4.343526 AGTTGAAGAAACAGCAGAGAGAGA 59.656 41.667 0.00 0.00 41.61 3.10
1309 1331 4.448395 CAGTTGAAGAAACAGCAGAGAGAG 59.552 45.833 0.00 0.00 41.61 3.20
1338 1360 1.773496 GTGCTGTCTTCGCACGTAC 59.227 57.895 0.00 0.00 46.81 3.67
1339 1361 4.238385 GTGCTGTCTTCGCACGTA 57.762 55.556 0.00 0.00 46.81 3.57
1353 1375 2.605580 GGAGCAACTTTAGCTTGTGTGC 60.606 50.000 0.00 0.00 43.58 4.57
1762 1828 7.010923 GCACAAGAGTTGGATATATATAGCAGC 59.989 40.741 10.05 0.12 34.12 5.25
1763 1829 8.256605 AGCACAAGAGTTGGATATATATAGCAG 58.743 37.037 10.05 0.00 34.12 4.24
1883 1949 4.774726 GTGGATAGATAAGGATGAGAGCCA 59.225 45.833 0.00 0.00 0.00 4.75
2208 2274 3.687125 GGTTAAGGTTCAGAGAAAGGGG 58.313 50.000 0.00 0.00 0.00 4.79
2218 2284 0.037590 ATGCAGGCGGTTAAGGTTCA 59.962 50.000 0.00 0.00 0.00 3.18
2239 2305 2.751837 GGGGGCAAGCCTTTCTCG 60.752 66.667 11.40 0.00 36.10 4.04
2253 2327 2.692741 GTGGGAAGGGAGAGGGGG 60.693 72.222 0.00 0.00 0.00 5.40
2265 2339 2.520465 CTATGCCGTGTGCTGTGGGA 62.520 60.000 0.00 0.00 42.00 4.37
2410 2485 2.689983 CAAAGAGAGGAGAGAGAGAGGC 59.310 54.545 0.00 0.00 0.00 4.70
2412 2487 2.689983 GGCAAAGAGAGGAGAGAGAGAG 59.310 54.545 0.00 0.00 0.00 3.20
2413 2488 2.311542 AGGCAAAGAGAGGAGAGAGAGA 59.688 50.000 0.00 0.00 0.00 3.10
2507 2582 3.804193 GCCGCTGCTGTTACTGCC 61.804 66.667 11.51 0.00 33.53 4.85
2514 2589 1.070445 GATATCCTGCCGCTGCTGT 59.930 57.895 0.70 0.00 38.71 4.40
2809 2884 1.335324 GCCTGTGACATTGTGTTCTGC 60.335 52.381 0.00 0.00 0.00 4.26
2882 2957 2.129555 ATCAACGCCTCCTGCTGGTT 62.130 55.000 9.73 0.00 38.05 3.67
3024 3099 5.530519 TGATGAAGACGACAAAGTATTGC 57.469 39.130 0.00 0.00 40.34 3.56
3129 3205 2.216046 TCAAGCTCAAAGCACAGACTG 58.784 47.619 0.00 0.00 45.56 3.51
3130 3206 2.492012 CTCAAGCTCAAAGCACAGACT 58.508 47.619 1.29 0.00 45.56 3.24
3152 3228 7.385894 AAGGCATATCTAGAACTGAAAGGAT 57.614 36.000 0.00 0.00 39.30 3.24
3242 3320 0.389391 TATTGCCTACTCTCCAGCGC 59.611 55.000 0.00 0.00 0.00 5.92
3296 3374 5.309323 CCAATCATCTTTTTGGCGACTTA 57.691 39.130 0.00 0.00 36.28 2.24
3535 3616 3.525800 AATTCCTGTAGGGTGTTGCTT 57.474 42.857 0.00 0.00 36.25 3.91
3546 3627 6.615726 AGATACCTGGAGCTAAAATTCCTGTA 59.384 38.462 0.00 0.00 34.48 2.74
3674 3755 2.838202 TCTCACCTTGGGATCTACCAAC 59.162 50.000 0.00 0.00 45.19 3.77
3985 4067 1.260538 TGTGAGCGCCCTCTCTGAAT 61.261 55.000 2.29 0.00 38.93 2.57
4012 4094 6.770746 ATACTGTTAGCGGTTCTAGAGAAA 57.229 37.500 0.00 0.00 35.58 2.52
4024 4106 4.675565 CGATAGTGGTGAATACTGTTAGCG 59.324 45.833 0.00 0.00 0.00 4.26
4070 4152 6.266786 TGAGCAGACCCTGAAACGATATATTA 59.733 38.462 0.00 0.00 32.44 0.98
4072 4154 4.588951 TGAGCAGACCCTGAAACGATATAT 59.411 41.667 0.00 0.00 32.44 0.86
4073 4155 3.958147 TGAGCAGACCCTGAAACGATATA 59.042 43.478 0.00 0.00 32.44 0.86
4158 4240 9.389570 GATAACGTTGTAAAGCTTGTAAATTGT 57.610 29.630 11.99 0.00 0.00 2.71
4159 4241 9.388346 TGATAACGTTGTAAAGCTTGTAAATTG 57.612 29.630 11.99 0.00 0.00 2.32
4160 4242 9.389570 GTGATAACGTTGTAAAGCTTGTAAATT 57.610 29.630 11.99 0.00 0.00 1.82
4161 4243 7.742963 CGTGATAACGTTGTAAAGCTTGTAAAT 59.257 33.333 11.99 0.00 0.00 1.40
4162 4244 7.064674 CGTGATAACGTTGTAAAGCTTGTAAA 58.935 34.615 11.99 0.00 0.00 2.01
4183 4265 2.684001 AGTTGTTGAACCTGACGTGA 57.316 45.000 0.00 0.00 31.81 4.35
4247 4329 0.870307 CTTCGTCTAACCATCGGGCG 60.870 60.000 0.00 0.00 37.90 6.13
4481 4563 2.418746 GCGCTAGACCTTGAGGATTTCA 60.419 50.000 0.00 0.00 38.94 2.69
4524 4606 9.740710 AAGGTCAGATAAATTAAAAGCACTACT 57.259 29.630 0.00 0.00 0.00 2.57
4541 4623 7.363268 GCCTTAATCATCAAACAAAGGTCAGAT 60.363 37.037 0.00 0.00 36.64 2.90
4554 4636 6.979817 GCATGTAACATTGCCTTAATCATCAA 59.020 34.615 0.00 0.00 32.66 2.57
4568 4650 3.441572 GGCAAGACTCAGCATGTAACATT 59.558 43.478 0.00 0.00 37.40 2.71
4588 4670 4.863131 CAGCATCTGATGAAAAGAAAAGGC 59.137 41.667 21.30 1.19 32.44 4.35
4589 4671 6.263516 TCAGCATCTGATGAAAAGAAAAGG 57.736 37.500 21.30 0.00 37.53 3.11
4819 4905 5.063880 ACGATAAAAGCTCTCAAGGTTGTT 58.936 37.500 0.00 0.00 42.27 2.83
4827 4913 3.509967 TGACCTGACGATAAAAGCTCTCA 59.490 43.478 0.00 0.00 0.00 3.27
4888 4975 6.795144 ATCATGCAAGAACATGGGATTTTA 57.205 33.333 0.00 0.00 46.08 1.52
4921 5008 9.548208 GAATGTATTTCTCTTTGTAAGTTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
5065 5156 4.160329 AGACAACATTCTGTAGGACCAGA 58.840 43.478 0.00 0.00 39.65 3.86
5088 5179 8.536340 AGTACCTTCTATCTATCCGAAAAGTT 57.464 34.615 0.00 0.00 0.00 2.66
5120 5211 7.389053 ACAAAGTTGAGTCATCTATTCTGGAAC 59.611 37.037 4.14 0.00 0.00 3.62
5122 5213 7.009179 ACAAAGTTGAGTCATCTATTCTGGA 57.991 36.000 4.14 0.00 0.00 3.86
5123 5214 8.037758 AGTACAAAGTTGAGTCATCTATTCTGG 58.962 37.037 4.14 0.00 0.00 3.86
5124 5215 8.994429 AGTACAAAGTTGAGTCATCTATTCTG 57.006 34.615 4.14 3.46 0.00 3.02
5157 5248 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
5158 5249 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
5159 5250 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
5160 5251 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
5161 5252 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
5162 5253 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
5163 5254 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
5164 5255 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
5165 5256 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
5166 5257 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
5167 5258 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
5168 5259 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
5169 5260 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5170 5261 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5171 5262 4.150897 TCCCTCCGTTCCAAAATAGATG 57.849 45.455 0.00 0.00 0.00 2.90
5172 5263 4.855298 TTCCCTCCGTTCCAAAATAGAT 57.145 40.909 0.00 0.00 0.00 1.98
5173 5264 4.855298 ATTCCCTCCGTTCCAAAATAGA 57.145 40.909 0.00 0.00 0.00 1.98
5174 5265 5.681639 AGTATTCCCTCCGTTCCAAAATAG 58.318 41.667 0.00 0.00 0.00 1.73
5175 5266 5.703730 AGTATTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
5176 5267 4.586306 AGTATTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
5177 5268 5.502089 TTAGTATTCCCTCCGTTCCAAAA 57.498 39.130 0.00 0.00 0.00 2.44
5178 5269 5.190132 TCATTAGTATTCCCTCCGTTCCAAA 59.810 40.000 0.00 0.00 0.00 3.28
5179 5270 4.717778 TCATTAGTATTCCCTCCGTTCCAA 59.282 41.667 0.00 0.00 0.00 3.53
5180 5271 4.291792 TCATTAGTATTCCCTCCGTTCCA 58.708 43.478 0.00 0.00 0.00 3.53
5181 5272 4.950205 TCATTAGTATTCCCTCCGTTCC 57.050 45.455 0.00 0.00 0.00 3.62
5222 5313 4.362279 CTCAAACAAAGTTGACCATGGTG 58.638 43.478 25.52 8.56 33.92 4.17
5224 5315 3.181477 TGCTCAAACAAAGTTGACCATGG 60.181 43.478 11.19 11.19 33.92 3.66
5504 5597 3.200825 CCAGAAATGGGAGTAGGACACAT 59.799 47.826 0.00 0.00 0.00 3.21
5538 5632 4.530857 GTCGGGCCGGAGTGGATG 62.531 72.222 27.98 0.00 42.00 3.51
5553 5647 5.086104 TCTACAACCAGCAAAGATAGGTC 57.914 43.478 0.00 0.00 32.05 3.85
5573 5667 3.119245 GCATGCATGATCCAAACTGTTCT 60.119 43.478 30.64 0.00 0.00 3.01
5580 5697 5.717654 ACATATATGGCATGCATGATCCAAA 59.282 36.000 30.64 16.93 31.66 3.28
5623 5744 0.321564 TCATGGACTGAACCCTTGCG 60.322 55.000 0.00 0.00 0.00 4.85
5626 5747 2.443255 ACAACTCATGGACTGAACCCTT 59.557 45.455 0.00 0.00 32.14 3.95
5651 5779 4.762289 AGGTTGTTGTGTCTCTTTCTCT 57.238 40.909 0.00 0.00 0.00 3.10
5760 5889 6.517605 AGAAGAGAACCTACAGAAAGACAAC 58.482 40.000 0.00 0.00 0.00 3.32
5841 5970 1.921869 ATCCACAAACCCCGGCCTAG 61.922 60.000 0.00 0.00 0.00 3.02
5846 5975 2.209690 AGTTTATCCACAAACCCCGG 57.790 50.000 0.00 0.00 38.86 5.73
5847 5976 4.763279 AGTAAAGTTTATCCACAAACCCCG 59.237 41.667 0.00 0.00 38.86 5.73
5961 6096 9.163899 TCTATGCTATGTAGTAGGATCTTAACG 57.836 37.037 0.00 0.00 40.24 3.18
5975 6110 7.610305 TCCGTGATCTACAATCTATGCTATGTA 59.390 37.037 0.00 0.00 0.00 2.29
5976 6111 6.434340 TCCGTGATCTACAATCTATGCTATGT 59.566 38.462 0.00 0.00 0.00 2.29
5977 6112 6.856895 TCCGTGATCTACAATCTATGCTATG 58.143 40.000 0.00 0.00 0.00 2.23
5998 6133 1.667724 GTGTGATGCCATTTCTCTCCG 59.332 52.381 0.00 0.00 0.00 4.63
6100 6236 5.221067 GCAGCATCAGATGACAATGAAAGAT 60.221 40.000 15.12 0.00 31.30 2.40
6101 6237 4.095932 GCAGCATCAGATGACAATGAAAGA 59.904 41.667 15.12 0.00 31.30 2.52
6102 6238 4.352039 GCAGCATCAGATGACAATGAAAG 58.648 43.478 15.12 0.00 31.30 2.62
6107 6243 1.306148 CGGCAGCATCAGATGACAAT 58.694 50.000 15.12 0.00 39.83 2.71
6179 6319 2.207590 CGGGCTTACGGGAAATCTAAC 58.792 52.381 0.00 0.00 0.00 2.34
6190 6332 3.124921 CTGGCAACCGGGCTTACG 61.125 66.667 6.32 0.00 43.83 3.18
6193 6335 1.151908 TTAACTGGCAACCGGGCTT 59.848 52.632 6.32 0.00 43.83 4.35
6202 6344 1.134037 AGTGAAACGGGTTAACTGGCA 60.134 47.619 5.42 0.00 45.86 4.92
6224 6366 5.706916 CAATGCCATGTTGAGATATTAGGC 58.293 41.667 0.00 0.00 41.15 3.93
6265 6407 2.663566 CAGGGTCTGCTGTCTCAGA 58.336 57.895 0.66 0.00 40.50 3.27
6391 6533 1.336517 TGTTTGTCTTACTCGCGAGGG 60.337 52.381 36.93 25.61 37.84 4.30
6422 6564 3.873361 TGAGTATTATGCTGTTGCTGAGC 59.127 43.478 0.00 0.00 40.48 4.26
6427 6569 6.037500 TGTGATTCTGAGTATTATGCTGTTGC 59.962 38.462 0.00 0.00 40.20 4.17
6434 6576 7.601886 GGGTGAGATGTGATTCTGAGTATTATG 59.398 40.741 0.00 0.00 0.00 1.90
6469 6612 3.672808 AGTTCCTGCAATTGAGAGAGTG 58.327 45.455 10.34 0.00 0.00 3.51
6475 6618 5.340803 CATCATGAAGTTCCTGCAATTGAG 58.659 41.667 10.34 3.86 0.00 3.02
6478 6621 3.118884 GGCATCATGAAGTTCCTGCAATT 60.119 43.478 16.29 0.00 0.00 2.32
6528 6671 1.228657 GCTGGTGAACGGACTGGAAC 61.229 60.000 0.00 0.00 0.00 3.62
6535 6678 3.240134 GAGGCTGCTGGTGAACGGA 62.240 63.158 0.00 0.00 0.00 4.69
6538 6681 2.331132 GCTGAGGCTGCTGGTGAAC 61.331 63.158 0.00 0.00 35.22 3.18
6546 6689 1.288127 CTGGTTTTGCTGAGGCTGC 59.712 57.895 0.00 0.00 39.59 5.25
6642 6788 5.043737 TCCCCTTTCCCAATATCTTAACG 57.956 43.478 0.00 0.00 0.00 3.18
6723 6869 0.531532 CGATGAGCCAGGCCAGTTAG 60.532 60.000 8.22 0.00 0.00 2.34
6744 6890 3.834489 AGAGCCATAGGAACATCACAG 57.166 47.619 0.00 0.00 0.00 3.66
6755 6906 2.012673 GGTGCAGTTCAAGAGCCATAG 58.987 52.381 0.00 0.00 0.00 2.23
6826 6977 2.739943 GCCCTTGCCTTTTCCTAATCT 58.260 47.619 0.00 0.00 0.00 2.40
6878 7029 7.238710 TGGCCTACTCTACTGATAATCATACA 58.761 38.462 3.32 0.00 0.00 2.29
6879 7030 7.704578 TGGCCTACTCTACTGATAATCATAC 57.295 40.000 3.32 0.00 0.00 2.39
6880 7031 8.901472 AATGGCCTACTCTACTGATAATCATA 57.099 34.615 3.32 0.00 0.00 2.15
6881 7032 7.093112 GGAATGGCCTACTCTACTGATAATCAT 60.093 40.741 3.32 0.00 0.00 2.45
6882 7033 6.211584 GGAATGGCCTACTCTACTGATAATCA 59.788 42.308 3.32 0.00 0.00 2.57
6883 7034 6.211584 TGGAATGGCCTACTCTACTGATAATC 59.788 42.308 3.32 0.00 37.63 1.75
6937 7090 4.756642 TGGCAAATGATCGGATCAGATTAC 59.243 41.667 23.59 15.59 43.53 1.89
6951 7104 1.268794 CCGTGTCGTTTTGGCAAATGA 60.269 47.619 14.29 11.97 35.84 2.57
6972 7125 2.835764 AGGTAACGGCTGGTTTATCTGA 59.164 45.455 0.00 0.00 46.39 3.27
6987 7140 5.175388 AGTGAGGGGACAAATTAGGTAAC 57.825 43.478 0.00 0.00 0.00 2.50
7008 7161 9.019764 CGCAAATCAGGTAATGGTTTATTTTAG 57.980 33.333 0.00 0.00 40.35 1.85
7009 7162 8.740906 TCGCAAATCAGGTAATGGTTTATTTTA 58.259 29.630 0.00 0.00 40.35 1.52
7011 7164 7.164230 TCGCAAATCAGGTAATGGTTTATTT 57.836 32.000 0.00 0.00 40.35 1.40
7109 7262 1.542915 GAGCAGCTCATTTTTCAGGCA 59.457 47.619 18.17 0.00 0.00 4.75
7120 7273 3.769739 TTACAGAAAAGGAGCAGCTCA 57.230 42.857 24.09 0.00 31.08 4.26
7136 7289 5.534654 AGCAATGTTTTCTAGCACCTTTACA 59.465 36.000 0.00 0.00 0.00 2.41
7137 7290 6.013842 AGCAATGTTTTCTAGCACCTTTAC 57.986 37.500 0.00 0.00 0.00 2.01
7138 7291 5.767665 TGAGCAATGTTTTCTAGCACCTTTA 59.232 36.000 0.00 0.00 0.00 1.85
7139 7292 4.584325 TGAGCAATGTTTTCTAGCACCTTT 59.416 37.500 0.00 0.00 0.00 3.11
7140 7293 4.144297 TGAGCAATGTTTTCTAGCACCTT 58.856 39.130 0.00 0.00 0.00 3.50
7141 7294 3.754965 TGAGCAATGTTTTCTAGCACCT 58.245 40.909 0.00 0.00 0.00 4.00
7161 7314 1.472480 CACGGCCAAGGGTTCTTATTG 59.528 52.381 2.24 0.00 0.00 1.90
7199 7352 4.920340 CACTTGATACAGACACTGAGACAC 59.080 45.833 5.76 0.00 35.18 3.67
7200 7353 4.559502 GCACTTGATACAGACACTGAGACA 60.560 45.833 5.76 0.48 35.18 3.41
7201 7354 3.923461 GCACTTGATACAGACACTGAGAC 59.077 47.826 5.76 0.00 35.18 3.36
7202 7355 3.573967 TGCACTTGATACAGACACTGAGA 59.426 43.478 5.76 0.00 35.18 3.27
7203 7356 3.917988 TGCACTTGATACAGACACTGAG 58.082 45.455 5.76 0.00 35.18 3.35
7204 7357 3.862264 GCTGCACTTGATACAGACACTGA 60.862 47.826 5.76 0.00 35.18 3.41
7205 7358 2.414481 GCTGCACTTGATACAGACACTG 59.586 50.000 0.00 0.00 37.52 3.66
7206 7359 2.301296 AGCTGCACTTGATACAGACACT 59.699 45.455 1.02 0.00 33.10 3.55
7283 7443 3.445687 TCACCATCCGTCGGGTCG 61.446 66.667 12.29 0.00 34.45 4.79
7284 7444 2.183555 GTCACCATCCGTCGGGTC 59.816 66.667 12.29 0.00 34.45 4.46
7285 7445 3.387947 GGTCACCATCCGTCGGGT 61.388 66.667 12.29 0.00 38.10 5.28
7286 7446 3.387091 TGGTCACCATCCGTCGGG 61.387 66.667 12.29 0.00 0.00 5.14
7287 7447 2.125673 GTGGTCACCATCCGTCGG 60.126 66.667 0.00 4.39 35.28 4.79
7333 7496 0.251916 CAAGACCATGCCGGGAGTAA 59.748 55.000 2.18 0.00 40.22 2.24
7334 7497 0.616395 TCAAGACCATGCCGGGAGTA 60.616 55.000 2.18 0.00 40.22 2.59
7335 7498 1.274703 ATCAAGACCATGCCGGGAGT 61.275 55.000 2.18 0.00 40.22 3.85
7336 7499 0.533755 GATCAAGACCATGCCGGGAG 60.534 60.000 2.18 0.00 40.22 4.30
7337 7500 1.526887 GATCAAGACCATGCCGGGA 59.473 57.895 2.18 0.00 40.22 5.14
7338 7501 1.526917 GGATCAAGACCATGCCGGG 60.527 63.158 2.18 0.00 40.22 5.73
7339 7502 0.816825 CTGGATCAAGACCATGCCGG 60.817 60.000 0.00 0.00 42.50 6.13
7340 7503 0.816825 CCTGGATCAAGACCATGCCG 60.817 60.000 0.00 0.00 36.79 5.69
7341 7504 0.466922 CCCTGGATCAAGACCATGCC 60.467 60.000 0.00 0.00 36.79 4.40
7342 7505 0.466922 CCCCTGGATCAAGACCATGC 60.467 60.000 0.00 0.00 36.79 4.06
7343 7506 0.184451 CCCCCTGGATCAAGACCATG 59.816 60.000 0.00 0.00 36.79 3.66
7344 7507 2.637919 CCCCCTGGATCAAGACCAT 58.362 57.895 0.00 0.00 36.79 3.55
7345 7508 4.169452 CCCCCTGGATCAAGACCA 57.831 61.111 0.00 0.00 35.96 4.02
7359 7522 4.467084 TTCACATCGAGCGCCCCC 62.467 66.667 2.29 0.00 0.00 5.40
7360 7523 3.195698 GTTCACATCGAGCGCCCC 61.196 66.667 2.29 0.00 0.00 5.80
7361 7524 3.195698 GGTTCACATCGAGCGCCC 61.196 66.667 2.29 0.00 0.00 6.13
7362 7525 2.125512 AGGTTCACATCGAGCGCC 60.126 61.111 2.29 0.00 0.00 6.53
7363 7526 3.084579 CAGGTTCACATCGAGCGC 58.915 61.111 0.00 0.00 0.00 5.92
7364 7527 2.792290 CGCAGGTTCACATCGAGCG 61.792 63.158 0.00 0.00 37.68 5.03
7365 7528 3.084579 CGCAGGTTCACATCGAGC 58.915 61.111 0.00 0.00 0.00 5.03
7392 7555 2.099062 CGAGTTTCAGCATGCCGC 59.901 61.111 15.66 0.00 42.91 6.53
7393 7556 2.099062 GCGAGTTTCAGCATGCCG 59.901 61.111 15.66 10.05 34.76 5.69
7394 7557 2.099062 CGCGAGTTTCAGCATGCC 59.901 61.111 15.66 0.00 34.76 4.40
7395 7558 2.863153 ACGCGAGTTTCAGCATGC 59.137 55.556 15.93 10.51 46.40 4.06
7406 7569 1.272781 GGATCTGAACTTGACGCGAG 58.727 55.000 15.93 1.31 0.00 5.03
7407 7570 0.456142 CGGATCTGAACTTGACGCGA 60.456 55.000 15.93 0.00 0.00 5.87
7408 7571 1.413767 CCGGATCTGAACTTGACGCG 61.414 60.000 3.53 3.53 0.00 6.01
7409 7572 0.108804 TCCGGATCTGAACTTGACGC 60.109 55.000 0.00 0.00 0.00 5.19
7410 7573 1.472878 TCTCCGGATCTGAACTTGACG 59.527 52.381 3.57 0.00 0.00 4.35
7411 7574 3.254892 GTTCTCCGGATCTGAACTTGAC 58.745 50.000 21.70 2.48 37.62 3.18
7412 7575 2.897326 TGTTCTCCGGATCTGAACTTGA 59.103 45.455 26.32 11.25 40.27 3.02
7413 7576 3.319137 TGTTCTCCGGATCTGAACTTG 57.681 47.619 26.32 6.02 40.27 3.16
7414 7577 4.065789 GTTTGTTCTCCGGATCTGAACTT 58.934 43.478 26.32 0.00 40.27 2.66
7415 7578 3.557264 GGTTTGTTCTCCGGATCTGAACT 60.557 47.826 26.32 0.00 40.27 3.01
7416 7579 2.742589 GGTTTGTTCTCCGGATCTGAAC 59.257 50.000 22.03 22.03 40.09 3.18
7417 7580 2.290071 GGGTTTGTTCTCCGGATCTGAA 60.290 50.000 3.57 1.81 0.00 3.02
7418 7581 1.278127 GGGTTTGTTCTCCGGATCTGA 59.722 52.381 3.57 0.00 0.00 3.27
7419 7582 1.679032 GGGGTTTGTTCTCCGGATCTG 60.679 57.143 3.57 0.00 0.00 2.90
7420 7583 0.618981 GGGGTTTGTTCTCCGGATCT 59.381 55.000 3.57 0.00 0.00 2.75
7421 7584 0.743345 CGGGGTTTGTTCTCCGGATC 60.743 60.000 3.57 0.00 38.93 3.36
7422 7585 1.298667 CGGGGTTTGTTCTCCGGAT 59.701 57.895 3.57 0.00 38.93 4.18
7423 7586 2.745037 CGGGGTTTGTTCTCCGGA 59.255 61.111 2.93 2.93 38.93 5.14
7424 7587 2.175035 TAGCGGGGTTTGTTCTCCGG 62.175 60.000 7.12 0.00 42.43 5.14
7425 7588 0.320946 TTAGCGGGGTTTGTTCTCCG 60.321 55.000 0.29 0.29 44.70 4.63
7426 7589 1.900245 TTTAGCGGGGTTTGTTCTCC 58.100 50.000 0.00 0.00 0.00 3.71
7427 7590 3.566742 TCTTTTTAGCGGGGTTTGTTCTC 59.433 43.478 0.00 0.00 0.00 2.87
7428 7591 3.317149 GTCTTTTTAGCGGGGTTTGTTCT 59.683 43.478 0.00 0.00 0.00 3.01
7429 7592 3.067040 TGTCTTTTTAGCGGGGTTTGTTC 59.933 43.478 0.00 0.00 0.00 3.18
7430 7593 3.025262 TGTCTTTTTAGCGGGGTTTGTT 58.975 40.909 0.00 0.00 0.00 2.83
7431 7594 2.359848 GTGTCTTTTTAGCGGGGTTTGT 59.640 45.455 0.00 0.00 0.00 2.83
7432 7595 2.359531 TGTGTCTTTTTAGCGGGGTTTG 59.640 45.455 0.00 0.00 0.00 2.93
7433 7596 2.621526 CTGTGTCTTTTTAGCGGGGTTT 59.378 45.455 0.00 0.00 0.00 3.27
7434 7597 2.158726 TCTGTGTCTTTTTAGCGGGGTT 60.159 45.455 0.00 0.00 0.00 4.11
7435 7598 1.418637 TCTGTGTCTTTTTAGCGGGGT 59.581 47.619 0.00 0.00 0.00 4.95
7436 7599 2.178912 TCTGTGTCTTTTTAGCGGGG 57.821 50.000 0.00 0.00 0.00 5.73
7437 7600 4.537015 CTTTTCTGTGTCTTTTTAGCGGG 58.463 43.478 0.00 0.00 0.00 6.13
7438 7601 3.975035 GCTTTTCTGTGTCTTTTTAGCGG 59.025 43.478 0.00 0.00 0.00 5.52
7439 7602 3.975035 GGCTTTTCTGTGTCTTTTTAGCG 59.025 43.478 0.00 0.00 0.00 4.26
7440 7603 5.188327 AGGCTTTTCTGTGTCTTTTTAGC 57.812 39.130 0.00 0.00 0.00 3.09
7441 7604 8.479313 AAAAAGGCTTTTCTGTGTCTTTTTAG 57.521 30.769 24.28 0.00 40.41 1.85
7442 7605 8.474006 GAAAAAGGCTTTTCTGTGTCTTTTTA 57.526 30.769 24.28 0.00 44.73 1.52
7443 7606 7.364522 GAAAAAGGCTTTTCTGTGTCTTTTT 57.635 32.000 24.28 14.95 44.73 1.94
7444 7607 6.968131 GAAAAAGGCTTTTCTGTGTCTTTT 57.032 33.333 24.28 5.85 44.73 2.27
7455 7618 8.969260 AAAATTCTGATCTGAAAAAGGCTTTT 57.031 26.923 19.14 19.14 37.46 2.27
7456 7619 8.969260 AAAAATTCTGATCTGAAAAAGGCTTT 57.031 26.923 17.62 6.68 0.00 3.51
7479 7642 1.228429 CGGGTGCAGGAGGGAAAAA 60.228 57.895 0.00 0.00 0.00 1.94
7480 7643 2.434331 CGGGTGCAGGAGGGAAAA 59.566 61.111 0.00 0.00 0.00 2.29
7481 7644 3.646715 CCGGGTGCAGGAGGGAAA 61.647 66.667 0.00 0.00 0.00 3.13
7482 7645 4.649705 TCCGGGTGCAGGAGGGAA 62.650 66.667 0.00 0.00 33.19 3.97
7485 7648 3.775654 GAGTCCGGGTGCAGGAGG 61.776 72.222 0.00 0.00 38.65 4.30
7486 7649 3.775654 GGAGTCCGGGTGCAGGAG 61.776 72.222 0.00 0.00 38.65 3.69
7487 7650 4.631740 TGGAGTCCGGGTGCAGGA 62.632 66.667 0.00 0.00 34.99 3.86
7488 7651 4.394712 GTGGAGTCCGGGTGCAGG 62.395 72.222 0.00 0.00 0.00 4.85
7489 7652 2.674563 TTTGTGGAGTCCGGGTGCAG 62.675 60.000 0.00 0.00 0.00 4.41
7490 7653 2.674563 CTTTGTGGAGTCCGGGTGCA 62.675 60.000 0.00 0.00 0.00 4.57
7491 7654 1.966451 CTTTGTGGAGTCCGGGTGC 60.966 63.158 0.00 0.00 0.00 5.01
7492 7655 1.302511 CCTTTGTGGAGTCCGGGTG 60.303 63.158 0.00 0.00 38.35 4.61
7493 7656 1.768888 ACCTTTGTGGAGTCCGGGT 60.769 57.895 0.00 4.87 39.71 5.28
7494 7657 1.302511 CACCTTTGTGGAGTCCGGG 60.303 63.158 0.00 4.25 38.90 5.73
7495 7658 0.320771 CTCACCTTTGTGGAGTCCGG 60.321 60.000 4.30 0.00 42.98 5.14
7496 7659 0.679505 TCTCACCTTTGTGGAGTCCG 59.320 55.000 4.30 0.00 42.98 4.79
7497 7660 2.104963 AGTTCTCACCTTTGTGGAGTCC 59.895 50.000 0.73 0.73 42.98 3.85
7498 7661 3.181465 TGAGTTCTCACCTTTGTGGAGTC 60.181 47.826 0.00 0.00 42.98 3.36
7499 7662 2.771943 TGAGTTCTCACCTTTGTGGAGT 59.228 45.455 0.00 0.00 42.98 3.85
7500 7663 3.475566 TGAGTTCTCACCTTTGTGGAG 57.524 47.619 0.00 0.00 42.98 3.86
7501 7664 3.496692 CCATGAGTTCTCACCTTTGTGGA 60.497 47.826 4.58 0.00 42.98 4.02
7502 7665 2.816087 CCATGAGTTCTCACCTTTGTGG 59.184 50.000 4.58 4.40 42.98 4.17
7503 7666 2.816087 CCCATGAGTTCTCACCTTTGTG 59.184 50.000 4.58 0.00 44.18 3.33
7504 7667 2.815589 GCCCATGAGTTCTCACCTTTGT 60.816 50.000 4.58 0.00 0.00 2.83
7505 7668 1.815003 GCCCATGAGTTCTCACCTTTG 59.185 52.381 4.58 0.14 0.00 2.77
7506 7669 1.707427 AGCCCATGAGTTCTCACCTTT 59.293 47.619 4.58 0.00 0.00 3.11
7507 7670 1.366319 AGCCCATGAGTTCTCACCTT 58.634 50.000 4.58 0.00 0.00 3.50
7508 7671 1.004044 CAAGCCCATGAGTTCTCACCT 59.996 52.381 4.58 0.00 0.00 4.00
7509 7672 1.457346 CAAGCCCATGAGTTCTCACC 58.543 55.000 4.58 0.00 0.00 4.02
7510 7673 0.807496 GCAAGCCCATGAGTTCTCAC 59.193 55.000 4.58 0.00 0.00 3.51
7511 7674 0.322816 GGCAAGCCCATGAGTTCTCA 60.323 55.000 4.96 4.96 0.00 3.27
7512 7675 0.034670 AGGCAAGCCCATGAGTTCTC 60.035 55.000 7.62 0.00 36.58 2.87
7513 7676 0.407139 AAGGCAAGCCCATGAGTTCT 59.593 50.000 7.62 0.00 36.58 3.01
7514 7677 0.529378 CAAGGCAAGCCCATGAGTTC 59.471 55.000 7.62 0.00 36.58 3.01
7515 7678 1.538687 GCAAGGCAAGCCCATGAGTT 61.539 55.000 16.07 0.00 36.58 3.01
7516 7679 1.980772 GCAAGGCAAGCCCATGAGT 60.981 57.895 16.07 0.00 36.58 3.41
7517 7680 1.681327 AGCAAGGCAAGCCCATGAG 60.681 57.895 16.07 1.16 36.58 2.90
7518 7681 1.980232 CAGCAAGGCAAGCCCATGA 60.980 57.895 16.07 0.00 36.58 3.07
7519 7682 2.577059 CAGCAAGGCAAGCCCATG 59.423 61.111 7.62 8.70 36.58 3.66
7520 7683 2.682494 CCAGCAAGGCAAGCCCAT 60.682 61.111 7.62 0.00 36.58 4.00
7529 7692 0.179000 ATTAGACTCGGCCAGCAAGG 59.821 55.000 2.24 0.00 41.84 3.61
7530 7693 1.137872 AGATTAGACTCGGCCAGCAAG 59.862 52.381 2.24 0.00 0.00 4.01
7531 7694 1.195115 AGATTAGACTCGGCCAGCAA 58.805 50.000 2.24 0.00 0.00 3.91
7532 7695 2.067365 TAGATTAGACTCGGCCAGCA 57.933 50.000 2.24 0.00 0.00 4.41
7533 7696 2.362717 AGTTAGATTAGACTCGGCCAGC 59.637 50.000 2.24 0.00 0.00 4.85
7534 7697 4.023021 GGTAGTTAGATTAGACTCGGCCAG 60.023 50.000 2.24 1.58 0.00 4.85
7535 7698 3.887716 GGTAGTTAGATTAGACTCGGCCA 59.112 47.826 2.24 0.00 0.00 5.36
7536 7699 4.143543 AGGTAGTTAGATTAGACTCGGCC 58.856 47.826 0.00 0.00 0.00 6.13
7537 7700 6.874288 TTAGGTAGTTAGATTAGACTCGGC 57.126 41.667 0.00 0.00 0.00 5.54
7538 7701 7.351223 CGTTTAGGTAGTTAGATTAGACTCGG 58.649 42.308 0.00 0.00 0.00 4.63
7539 7702 7.351223 CCGTTTAGGTAGTTAGATTAGACTCG 58.649 42.308 0.00 0.00 34.51 4.18
7540 7703 7.138081 GCCGTTTAGGTAGTTAGATTAGACTC 58.862 42.308 0.00 0.00 43.70 3.36
7541 7704 6.040278 GGCCGTTTAGGTAGTTAGATTAGACT 59.960 42.308 0.00 0.00 43.70 3.24
7542 7705 6.040278 AGGCCGTTTAGGTAGTTAGATTAGAC 59.960 42.308 0.00 0.00 43.70 2.59
7543 7706 6.040166 CAGGCCGTTTAGGTAGTTAGATTAGA 59.960 42.308 0.00 0.00 43.70 2.10
7544 7707 6.040166 TCAGGCCGTTTAGGTAGTTAGATTAG 59.960 42.308 0.00 0.00 43.70 1.73
7545 7708 5.893255 TCAGGCCGTTTAGGTAGTTAGATTA 59.107 40.000 0.00 0.00 43.70 1.75
7546 7709 4.713321 TCAGGCCGTTTAGGTAGTTAGATT 59.287 41.667 0.00 0.00 43.70 2.40
7547 7710 4.284178 TCAGGCCGTTTAGGTAGTTAGAT 58.716 43.478 0.00 0.00 43.70 1.98
7548 7711 3.700538 TCAGGCCGTTTAGGTAGTTAGA 58.299 45.455 0.00 0.00 43.70 2.10
7549 7712 4.460948 TTCAGGCCGTTTAGGTAGTTAG 57.539 45.455 0.00 0.00 43.70 2.34
7550 7713 5.180271 CAATTCAGGCCGTTTAGGTAGTTA 58.820 41.667 0.00 0.00 43.70 2.24
7551 7714 3.994931 ATTCAGGCCGTTTAGGTAGTT 57.005 42.857 0.00 0.00 43.70 2.24
7552 7715 3.606687 CAATTCAGGCCGTTTAGGTAGT 58.393 45.455 0.00 0.00 43.70 2.73
7553 7716 2.354821 GCAATTCAGGCCGTTTAGGTAG 59.645 50.000 0.00 0.00 43.70 3.18
7554 7717 2.361789 GCAATTCAGGCCGTTTAGGTA 58.638 47.619 0.00 0.00 43.70 3.08
7555 7718 1.173913 GCAATTCAGGCCGTTTAGGT 58.826 50.000 0.00 0.00 43.70 3.08
7556 7719 0.455815 GGCAATTCAGGCCGTTTAGG 59.544 55.000 0.00 0.00 42.39 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.