Multiple sequence alignment - TraesCS1A01G276100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G276100 chr1A 100.000 6950 0 0 1 6950 471326931 471319982 0.000000e+00 12835.0
1 TraesCS1A01G276100 chr1A 94.000 100 4 2 2719 2817 471324115 471324213 4.340000e-32 150.0
2 TraesCS1A01G276100 chr1A 92.308 65 5 0 6312 6376 249054815 249054879 7.420000e-15 93.5
3 TraesCS1A01G276100 chr1D 96.385 3541 94 13 2816 6339 371661219 371657696 0.000000e+00 5799.0
4 TraesCS1A01G276100 chr1D 95.333 1157 46 8 1571 2721 371662371 371661217 0.000000e+00 1831.0
5 TraesCS1A01G276100 chr1D 93.722 908 32 6 690 1575 371663299 371662395 0.000000e+00 1338.0
6 TraesCS1A01G276100 chr1D 87.500 560 25 16 6424 6950 371657558 371657011 7.710000e-169 604.0
7 TraesCS1A01G276100 chr1D 89.796 245 20 3 1 241 371701745 371701502 6.770000e-80 309.0
8 TraesCS1A01G276100 chr1D 84.184 196 28 3 354 546 371682777 371682582 3.310000e-43 187.0
9 TraesCS1A01G276100 chr1D 92.063 63 5 0 6314 6376 59876032 59875970 9.600000e-14 89.8
10 TraesCS1A01G276100 chr1D 96.774 31 1 0 6403 6433 342174263 342174293 1.300000e-02 52.8
11 TraesCS1A01G276100 chr1B 96.282 3523 87 14 2816 6322 496098765 496095271 0.000000e+00 5740.0
12 TraesCS1A01G276100 chr1B 92.374 2439 112 24 351 2721 496101195 496098763 0.000000e+00 3406.0
13 TraesCS1A01G276100 chr1B 85.208 480 26 7 6492 6950 496095039 496094584 1.060000e-122 451.0
14 TraesCS1A01G276100 chr1B 92.308 52 1 3 6409 6459 496095099 496095050 3.480000e-08 71.3
15 TraesCS1A01G276100 chr1B 97.222 36 0 1 6403 6438 202010481 202010447 7.530000e-05 60.2
16 TraesCS1A01G276100 chr5B 86.677 668 55 17 2880 3521 509687496 509686837 0.000000e+00 710.0
17 TraesCS1A01G276100 chr7D 86.398 669 56 19 2880 3521 53681598 53680938 0.000000e+00 699.0
18 TraesCS1A01G276100 chr7D 88.889 108 6 2 2717 2822 128787637 128787740 2.030000e-25 128.0
19 TraesCS1A01G276100 chr7D 87.719 114 6 6 2711 2820 128787744 128787635 7.320000e-25 126.0
20 TraesCS1A01G276100 chr7D 83.740 123 14 4 6312 6432 424708818 424708936 2.050000e-20 111.0
21 TraesCS1A01G276100 chr7B 86.377 668 57 17 2880 3521 726106445 726105786 0.000000e+00 699.0
22 TraesCS1A01G276100 chr7B 85.391 575 76 7 2147 2718 749298548 749299117 2.160000e-164 590.0
23 TraesCS1A01G276100 chr7B 87.972 424 37 11 2277 2693 408937297 408937713 8.100000e-134 488.0
24 TraesCS1A01G276100 chr6B 86.398 669 55 20 2880 3521 547719292 547719951 0.000000e+00 699.0
25 TraesCS1A01G276100 chr6B 88.034 117 11 3 2706 2821 574023742 574023856 1.220000e-27 135.0
26 TraesCS1A01G276100 chr6B 89.899 99 8 2 2719 2817 574023852 574023756 7.320000e-25 126.0
27 TraesCS1A01G276100 chr6B 93.651 63 4 0 6314 6376 688305746 688305808 2.060000e-15 95.3
28 TraesCS1A01G276100 chr2A 85.739 582 72 10 2147 2724 160836456 160835882 7.710000e-169 604.0
29 TraesCS1A01G276100 chr2A 89.706 68 6 1 6313 6380 436008478 436008544 1.240000e-12 86.1
30 TraesCS1A01G276100 chr2D 88.626 422 39 7 2277 2693 352981327 352980910 8.050000e-139 505.0
31 TraesCS1A01G276100 chr2D 87.963 108 9 4 2712 2817 560095703 560095598 2.630000e-24 124.0
32 TraesCS1A01G276100 chr2D 88.889 99 9 1 2719 2817 560095598 560095694 3.400000e-23 121.0
33 TraesCS1A01G276100 chr2D 86.765 68 1 2 2853 2912 352980874 352980807 1.250000e-07 69.4
34 TraesCS1A01G276100 chr2D 97.143 35 1 0 6400 6434 312020484 312020518 7.530000e-05 60.2
35 TraesCS1A01G276100 chr2D 96.774 31 1 0 6403 6433 43976533 43976563 1.300000e-02 52.8
36 TraesCS1A01G276100 chr3B 87.915 422 42 7 2277 2693 68462444 68462027 8.100000e-134 488.0
37 TraesCS1A01G276100 chr3B 87.915 422 42 7 2277 2693 778243751 778244168 8.100000e-134 488.0
38 TraesCS1A01G276100 chrUn 87.678 422 43 8 2277 2693 387670480 387670897 3.770000e-132 483.0
39 TraesCS1A01G276100 chr7A 91.579 95 6 1 2725 2819 271736493 271736401 5.660000e-26 130.0
40 TraesCS1A01G276100 chr6D 89.899 99 8 2 2719 2817 383747913 383747817 7.320000e-25 126.0
41 TraesCS1A01G276100 chr6D 93.617 47 3 0 133 179 13137048 13137002 3.480000e-08 71.3
42 TraesCS1A01G276100 chr6D 100.000 31 0 0 6403 6433 368363635 368363665 2.710000e-04 58.4
43 TraesCS1A01G276100 chr3D 95.238 63 3 0 6314 6376 324311165 324311103 4.440000e-17 100.0
44 TraesCS1A01G276100 chr3D 100.000 30 0 0 6404 6433 352783155 352783126 1.000000e-03 56.5
45 TraesCS1A01G276100 chr3A 93.651 63 4 0 6314 6376 397141372 397141434 2.060000e-15 95.3
46 TraesCS1A01G276100 chr3A 92.063 63 5 0 6314 6376 58929425 58929363 9.600000e-14 89.8
47 TraesCS1A01G276100 chr5D 93.548 62 4 0 6315 6376 59228034 59228095 7.420000e-15 93.5
48 TraesCS1A01G276100 chr5D 100.000 28 0 0 6407 6434 399289794 399289821 1.300000e-02 52.8
49 TraesCS1A01G276100 chr5A 87.143 70 1 2 2853 2914 216669265 216669196 9.670000e-09 73.1
50 TraesCS1A01G276100 chr4B 97.561 41 1 0 2874 2914 203527411 203527371 3.480000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G276100 chr1A 471319982 471326931 6949 True 12835.000 12835 100.0000 1 6950 1 chr1A.!!$R1 6949
1 TraesCS1A01G276100 chr1D 371657011 371663299 6288 True 2393.000 5799 93.2350 690 6950 4 chr1D.!!$R4 6260
2 TraesCS1A01G276100 chr1B 496094584 496101195 6611 True 2417.075 5740 91.5430 351 6950 4 chr1B.!!$R2 6599
3 TraesCS1A01G276100 chr5B 509686837 509687496 659 True 710.000 710 86.6770 2880 3521 1 chr5B.!!$R1 641
4 TraesCS1A01G276100 chr7D 53680938 53681598 660 True 699.000 699 86.3980 2880 3521 1 chr7D.!!$R1 641
5 TraesCS1A01G276100 chr7B 726105786 726106445 659 True 699.000 699 86.3770 2880 3521 1 chr7B.!!$R1 641
6 TraesCS1A01G276100 chr7B 749298548 749299117 569 False 590.000 590 85.3910 2147 2718 1 chr7B.!!$F2 571
7 TraesCS1A01G276100 chr6B 547719292 547719951 659 False 699.000 699 86.3980 2880 3521 1 chr6B.!!$F1 641
8 TraesCS1A01G276100 chr2A 160835882 160836456 574 True 604.000 604 85.7390 2147 2724 1 chr2A.!!$R1 577
9 TraesCS1A01G276100 chr2D 352980807 352981327 520 True 287.200 505 87.6955 2277 2912 2 chr2D.!!$R2 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.033011 GAGAGCCTCCTAGGTGTCCA 60.033 60.000 9.08 0.00 37.80 4.02 F
216 217 0.035152 TAGGTGTCCATTGCCAGCTG 60.035 55.000 6.78 6.78 39.55 4.24 F
498 502 0.179081 GACCGCCGCCTTCTAAATCT 60.179 55.000 0.00 0.00 0.00 2.40 F
1540 1603 0.181114 TGCTTAATGCCTCGCCATCT 59.819 50.000 0.00 0.00 42.00 2.90 F
2062 2155 1.830477 CCCTCCAGACTCAGAAGAAGG 59.170 57.143 0.00 0.00 0.00 3.46 F
2839 2941 0.107643 TTGCTTGACCGTGTCCATCA 59.892 50.000 2.23 0.00 0.00 3.07 F
3030 3140 0.987294 CTTCCCCAGGACATGTGAGT 59.013 55.000 1.15 0.00 0.00 3.41 F
3297 3435 2.542205 CCATGTGTGTCACTGCAAAGTG 60.542 50.000 4.27 0.00 40.90 3.16 F
5123 5273 2.239681 ACCCCAGTTTGTGTTTGGAA 57.760 45.000 0.00 0.00 33.76 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 2162 0.392193 CATCTTCAAGGGCGACAGCT 60.392 55.000 0.00 0.00 44.37 4.24 R
2392 2491 8.816640 AATTGTTCAAATGGATGTGTTAACTC 57.183 30.769 7.22 3.79 0.00 3.01 R
2420 2519 4.584325 TGCCTACTGACAAGAAGCATTTTT 59.416 37.500 0.00 0.00 0.00 1.94 R
2738 2840 1.068588 TGTACTGAAGCAGCGACAAGT 59.931 47.619 0.00 0.00 34.37 3.16 R
4190 4331 0.038744 CCACCTCCACAGGCTCAATT 59.961 55.000 0.00 0.00 45.05 2.32 R
4691 4840 3.386768 TCGCCTCCTACATTTATCTGC 57.613 47.619 0.00 0.00 0.00 4.26 R
4814 4964 3.636153 AGGCAGAACATCTTTCCTACC 57.364 47.619 0.00 0.00 28.59 3.18 R
5238 5391 0.817654 CGAGACATACAGGCACCAGA 59.182 55.000 0.00 0.00 0.00 3.86 R
6676 6929 0.107508 AGGCGTTGATGATCACAGGG 60.108 55.000 0.00 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.943381 GGTTTAAATAGGTCCTCCCAACG 59.057 47.826 0.00 0.00 34.66 4.10
23 24 4.323715 GGTTTAAATAGGTCCTCCCAACGA 60.324 45.833 0.00 0.00 34.66 3.85
24 25 5.247862 GTTTAAATAGGTCCTCCCAACGAA 58.752 41.667 0.00 0.00 34.66 3.85
25 26 3.345508 AAATAGGTCCTCCCAACGAAC 57.654 47.619 0.00 0.00 34.66 3.95
26 27 1.201424 ATAGGTCCTCCCAACGAACC 58.799 55.000 0.00 0.00 34.66 3.62
27 28 0.178926 TAGGTCCTCCCAACGAACCA 60.179 55.000 0.00 0.00 34.66 3.67
28 29 0.840722 AGGTCCTCCCAACGAACCAT 60.841 55.000 0.00 0.00 34.66 3.55
29 30 0.906775 GGTCCTCCCAACGAACCATA 59.093 55.000 0.00 0.00 0.00 2.74
30 31 1.134491 GGTCCTCCCAACGAACCATAG 60.134 57.143 0.00 0.00 0.00 2.23
31 32 1.134491 GTCCTCCCAACGAACCATAGG 60.134 57.143 0.00 0.00 0.00 2.57
32 33 0.180406 CCTCCCAACGAACCATAGGG 59.820 60.000 0.00 0.00 40.98 3.53
48 49 6.451064 CCATAGGGTACTTTCATTTTGGTC 57.549 41.667 0.00 0.00 0.00 4.02
49 50 5.359860 CCATAGGGTACTTTCATTTTGGTCC 59.640 44.000 0.00 0.00 0.00 4.46
50 51 4.463050 AGGGTACTTTCATTTTGGTCCA 57.537 40.909 0.00 0.00 0.00 4.02
51 52 5.010708 AGGGTACTTTCATTTTGGTCCAT 57.989 39.130 0.00 0.00 0.00 3.41
52 53 5.016831 AGGGTACTTTCATTTTGGTCCATC 58.983 41.667 0.00 0.00 0.00 3.51
53 54 5.016831 GGGTACTTTCATTTTGGTCCATCT 58.983 41.667 0.00 0.00 0.00 2.90
54 55 6.011981 AGGGTACTTTCATTTTGGTCCATCTA 60.012 38.462 0.00 0.00 0.00 1.98
55 56 6.095021 GGGTACTTTCATTTTGGTCCATCTAC 59.905 42.308 0.00 0.00 0.00 2.59
56 57 6.884836 GGTACTTTCATTTTGGTCCATCTACT 59.115 38.462 0.00 0.00 0.00 2.57
57 58 7.393515 GGTACTTTCATTTTGGTCCATCTACTT 59.606 37.037 0.00 0.00 0.00 2.24
58 59 7.454260 ACTTTCATTTTGGTCCATCTACTTC 57.546 36.000 0.00 0.00 0.00 3.01
59 60 6.434340 ACTTTCATTTTGGTCCATCTACTTCC 59.566 38.462 0.00 0.00 0.00 3.46
60 61 4.855340 TCATTTTGGTCCATCTACTTCCC 58.145 43.478 0.00 0.00 0.00 3.97
61 62 4.290985 TCATTTTGGTCCATCTACTTCCCA 59.709 41.667 0.00 0.00 0.00 4.37
62 63 4.301072 TTTTGGTCCATCTACTTCCCAG 57.699 45.455 0.00 0.00 0.00 4.45
63 64 2.940514 TGGTCCATCTACTTCCCAGA 57.059 50.000 0.00 0.00 0.00 3.86
64 65 3.199442 TGGTCCATCTACTTCCCAGAA 57.801 47.619 0.00 0.00 0.00 3.02
65 66 3.107601 TGGTCCATCTACTTCCCAGAAG 58.892 50.000 2.83 2.83 0.00 2.85
66 67 2.158885 GGTCCATCTACTTCCCAGAAGC 60.159 54.545 4.28 0.00 0.00 3.86
67 68 2.501723 GTCCATCTACTTCCCAGAAGCA 59.498 50.000 4.28 0.00 0.00 3.91
68 69 2.768527 TCCATCTACTTCCCAGAAGCAG 59.231 50.000 4.28 1.54 0.00 4.24
69 70 2.559440 CATCTACTTCCCAGAAGCAGC 58.441 52.381 4.28 0.00 0.00 5.25
70 71 1.644509 TCTACTTCCCAGAAGCAGCA 58.355 50.000 4.28 0.00 0.00 4.41
71 72 1.276421 TCTACTTCCCAGAAGCAGCAC 59.724 52.381 4.28 0.00 0.00 4.40
72 73 0.037326 TACTTCCCAGAAGCAGCACG 60.037 55.000 4.28 0.00 0.00 5.34
73 74 1.004560 CTTCCCAGAAGCAGCACGA 60.005 57.895 0.00 0.00 0.00 4.35
74 75 0.392193 CTTCCCAGAAGCAGCACGAT 60.392 55.000 0.00 0.00 0.00 3.73
75 76 0.391661 TTCCCAGAAGCAGCACGATC 60.392 55.000 0.00 0.00 0.00 3.69
76 77 1.078918 CCCAGAAGCAGCACGATCA 60.079 57.895 0.00 0.00 0.00 2.92
77 78 0.674581 CCCAGAAGCAGCACGATCAA 60.675 55.000 0.00 0.00 0.00 2.57
78 79 1.159285 CCAGAAGCAGCACGATCAAA 58.841 50.000 0.00 0.00 0.00 2.69
79 80 1.741706 CCAGAAGCAGCACGATCAAAT 59.258 47.619 0.00 0.00 0.00 2.32
80 81 2.163010 CCAGAAGCAGCACGATCAAATT 59.837 45.455 0.00 0.00 0.00 1.82
81 82 3.168963 CAGAAGCAGCACGATCAAATTG 58.831 45.455 0.00 0.00 0.00 2.32
82 83 2.816087 AGAAGCAGCACGATCAAATTGT 59.184 40.909 0.00 0.00 0.00 2.71
83 84 2.624316 AGCAGCACGATCAAATTGTG 57.376 45.000 0.00 3.40 45.52 3.33
84 85 1.881973 AGCAGCACGATCAAATTGTGT 59.118 42.857 8.66 0.00 44.75 3.72
85 86 2.095567 AGCAGCACGATCAAATTGTGTC 60.096 45.455 8.66 2.72 44.75 3.67
86 87 2.855180 CAGCACGATCAAATTGTGTCC 58.145 47.619 8.66 0.00 44.75 4.02
87 88 2.226200 CAGCACGATCAAATTGTGTCCA 59.774 45.455 8.66 0.00 44.75 4.02
88 89 2.226437 AGCACGATCAAATTGTGTCCAC 59.774 45.455 8.66 0.00 44.75 4.02
89 90 2.226437 GCACGATCAAATTGTGTCCACT 59.774 45.455 8.66 0.00 44.75 4.00
90 91 3.304659 GCACGATCAAATTGTGTCCACTT 60.305 43.478 8.66 0.00 44.75 3.16
91 92 4.221342 CACGATCAAATTGTGTCCACTTG 58.779 43.478 0.00 0.00 39.36 3.16
92 93 3.882888 ACGATCAAATTGTGTCCACTTGT 59.117 39.130 0.00 0.00 0.00 3.16
93 94 4.024048 ACGATCAAATTGTGTCCACTTGTC 60.024 41.667 0.00 0.00 0.00 3.18
94 95 4.613622 CGATCAAATTGTGTCCACTTGTCC 60.614 45.833 0.00 0.00 0.00 4.02
95 96 2.616376 TCAAATTGTGTCCACTTGTCCG 59.384 45.455 0.00 0.00 0.00 4.79
96 97 2.616376 CAAATTGTGTCCACTTGTCCGA 59.384 45.455 0.00 0.00 0.00 4.55
97 98 2.631160 ATTGTGTCCACTTGTCCGAA 57.369 45.000 0.00 0.00 0.00 4.30
98 99 2.631160 TTGTGTCCACTTGTCCGAAT 57.369 45.000 0.00 0.00 0.00 3.34
99 100 2.163818 TGTGTCCACTTGTCCGAATC 57.836 50.000 0.00 0.00 0.00 2.52
100 101 1.270625 TGTGTCCACTTGTCCGAATCC 60.271 52.381 0.00 0.00 0.00 3.01
101 102 0.323629 TGTCCACTTGTCCGAATCCC 59.676 55.000 0.00 0.00 0.00 3.85
102 103 0.323629 GTCCACTTGTCCGAATCCCA 59.676 55.000 0.00 0.00 0.00 4.37
103 104 1.065418 GTCCACTTGTCCGAATCCCAT 60.065 52.381 0.00 0.00 0.00 4.00
104 105 1.209504 TCCACTTGTCCGAATCCCATC 59.790 52.381 0.00 0.00 0.00 3.51
105 106 1.065491 CCACTTGTCCGAATCCCATCA 60.065 52.381 0.00 0.00 0.00 3.07
106 107 2.009774 CACTTGTCCGAATCCCATCAC 58.990 52.381 0.00 0.00 0.00 3.06
107 108 1.065418 ACTTGTCCGAATCCCATCACC 60.065 52.381 0.00 0.00 0.00 4.02
108 109 0.988063 TTGTCCGAATCCCATCACCA 59.012 50.000 0.00 0.00 0.00 4.17
109 110 0.988063 TGTCCGAATCCCATCACCAA 59.012 50.000 0.00 0.00 0.00 3.67
110 111 1.065491 TGTCCGAATCCCATCACCAAG 60.065 52.381 0.00 0.00 0.00 3.61
111 112 1.209504 GTCCGAATCCCATCACCAAGA 59.790 52.381 0.00 0.00 0.00 3.02
112 113 1.912731 TCCGAATCCCATCACCAAGAA 59.087 47.619 0.00 0.00 0.00 2.52
113 114 2.092968 TCCGAATCCCATCACCAAGAAG 60.093 50.000 0.00 0.00 0.00 2.85
114 115 2.092968 CCGAATCCCATCACCAAGAAGA 60.093 50.000 0.00 0.00 0.00 2.87
115 116 3.609853 CGAATCCCATCACCAAGAAGAA 58.390 45.455 0.00 0.00 0.00 2.52
116 117 4.009675 CGAATCCCATCACCAAGAAGAAA 58.990 43.478 0.00 0.00 0.00 2.52
117 118 4.458989 CGAATCCCATCACCAAGAAGAAAA 59.541 41.667 0.00 0.00 0.00 2.29
118 119 5.048083 CGAATCCCATCACCAAGAAGAAAAA 60.048 40.000 0.00 0.00 0.00 1.94
119 120 5.990120 ATCCCATCACCAAGAAGAAAAAG 57.010 39.130 0.00 0.00 0.00 2.27
120 121 3.573967 TCCCATCACCAAGAAGAAAAAGC 59.426 43.478 0.00 0.00 0.00 3.51
121 122 3.568538 CCATCACCAAGAAGAAAAAGCG 58.431 45.455 0.00 0.00 0.00 4.68
122 123 2.774439 TCACCAAGAAGAAAAAGCGC 57.226 45.000 0.00 0.00 0.00 5.92
123 124 1.336755 TCACCAAGAAGAAAAAGCGCC 59.663 47.619 2.29 0.00 0.00 6.53
124 125 1.066908 CACCAAGAAGAAAAAGCGCCA 59.933 47.619 2.29 0.00 0.00 5.69
125 126 1.963515 ACCAAGAAGAAAAAGCGCCAT 59.036 42.857 2.29 0.00 0.00 4.40
126 127 2.365293 ACCAAGAAGAAAAAGCGCCATT 59.635 40.909 2.29 0.00 0.00 3.16
127 128 2.733026 CCAAGAAGAAAAAGCGCCATTG 59.267 45.455 2.29 0.00 0.00 2.82
128 129 2.070262 AGAAGAAAAAGCGCCATTGC 57.930 45.000 2.29 0.00 0.00 3.56
129 130 1.340889 AGAAGAAAAAGCGCCATTGCA 59.659 42.857 2.29 0.00 37.32 4.08
130 131 2.028748 AGAAGAAAAAGCGCCATTGCAT 60.029 40.909 2.29 0.00 37.32 3.96
131 132 1.717194 AGAAAAAGCGCCATTGCATG 58.283 45.000 2.29 0.00 37.32 4.06
132 133 1.001181 AGAAAAAGCGCCATTGCATGT 59.999 42.857 2.29 0.00 37.32 3.21
133 134 1.799994 GAAAAAGCGCCATTGCATGTT 59.200 42.857 2.29 0.00 37.32 2.71
134 135 2.739885 AAAAGCGCCATTGCATGTTA 57.260 40.000 2.29 0.00 37.32 2.41
135 136 1.994916 AAAGCGCCATTGCATGTTAC 58.005 45.000 2.29 0.00 37.32 2.50
136 137 1.176527 AAGCGCCATTGCATGTTACT 58.823 45.000 2.29 0.00 37.32 2.24
137 138 0.734889 AGCGCCATTGCATGTTACTC 59.265 50.000 2.29 0.00 37.32 2.59
138 139 0.248621 GCGCCATTGCATGTTACTCC 60.249 55.000 0.00 0.00 37.32 3.85
139 140 1.382522 CGCCATTGCATGTTACTCCT 58.617 50.000 0.00 0.00 37.32 3.69
140 141 2.560504 CGCCATTGCATGTTACTCCTA 58.439 47.619 0.00 0.00 37.32 2.94
141 142 3.141398 CGCCATTGCATGTTACTCCTAT 58.859 45.455 0.00 0.00 37.32 2.57
142 143 4.314961 CGCCATTGCATGTTACTCCTATA 58.685 43.478 0.00 0.00 37.32 1.31
143 144 4.389992 CGCCATTGCATGTTACTCCTATAG 59.610 45.833 0.00 0.00 37.32 1.31
144 145 5.551233 GCCATTGCATGTTACTCCTATAGA 58.449 41.667 0.00 0.00 37.47 1.98
145 146 5.641209 GCCATTGCATGTTACTCCTATAGAG 59.359 44.000 0.00 0.00 42.41 2.43
146 147 7.293731 GCCATTGCATGTTACTCCTATAGAGG 61.294 46.154 0.00 0.00 41.58 3.69
147 148 9.365150 GCCATTGCATGTTACTCCTATAGAGGA 62.365 44.444 5.85 5.85 43.09 3.71
160 161 5.986501 CTATAGAGGATGTTGGAGTACCC 57.013 47.826 0.00 0.00 34.81 3.69
161 162 2.642171 AGAGGATGTTGGAGTACCCA 57.358 50.000 0.00 0.00 44.93 4.51
162 163 2.188817 AGAGGATGTTGGAGTACCCAC 58.811 52.381 2.87 0.00 46.62 4.61
163 164 1.209747 GAGGATGTTGGAGTACCCACC 59.790 57.143 2.87 2.20 46.62 4.61
164 165 1.203440 AGGATGTTGGAGTACCCACCT 60.203 52.381 2.87 4.16 46.62 4.00
165 166 1.209747 GGATGTTGGAGTACCCACCTC 59.790 57.143 2.87 0.00 46.62 3.85
166 167 2.188817 GATGTTGGAGTACCCACCTCT 58.811 52.381 2.87 0.00 46.62 3.69
167 168 1.640917 TGTTGGAGTACCCACCTCTC 58.359 55.000 2.87 0.00 46.62 3.20
168 169 1.149288 TGTTGGAGTACCCACCTCTCT 59.851 52.381 2.87 0.00 46.62 3.10
169 170 1.550976 GTTGGAGTACCCACCTCTCTG 59.449 57.143 2.87 0.00 46.62 3.35
170 171 0.041238 TGGAGTACCCACCTCTCTGG 59.959 60.000 0.00 0.00 40.82 3.86
177 178 2.833244 CCACCTCTCTGGGATCCTC 58.167 63.158 12.58 2.25 41.11 3.71
178 179 1.112315 CCACCTCTCTGGGATCCTCG 61.112 65.000 12.58 2.98 41.11 4.63
179 180 0.106469 CACCTCTCTGGGATCCTCGA 60.106 60.000 12.58 7.49 41.11 4.04
180 181 0.184933 ACCTCTCTGGGATCCTCGAG 59.815 60.000 12.58 16.56 41.11 4.04
181 182 0.539438 CCTCTCTGGGATCCTCGAGG 60.539 65.000 26.32 26.32 32.93 4.63
182 183 0.539438 CTCTCTGGGATCCTCGAGGG 60.539 65.000 30.80 18.36 35.41 4.30
183 184 1.231641 CTCTGGGATCCTCGAGGGT 59.768 63.158 30.80 25.99 36.25 4.34
184 185 1.075970 TCTGGGATCCTCGAGGGTG 60.076 63.158 30.80 12.55 36.25 4.61
185 186 1.075970 CTGGGATCCTCGAGGGTGA 60.076 63.158 30.80 12.97 36.25 4.02
186 187 0.687757 CTGGGATCCTCGAGGGTGAA 60.688 60.000 30.80 12.57 36.25 3.18
187 188 0.687757 TGGGATCCTCGAGGGTGAAG 60.688 60.000 30.80 4.60 36.25 3.02
188 189 0.397254 GGGATCCTCGAGGGTGAAGA 60.397 60.000 30.80 11.35 36.25 2.87
189 190 1.036707 GGATCCTCGAGGGTGAAGAG 58.963 60.000 30.80 3.01 36.25 2.85
190 191 1.410365 GGATCCTCGAGGGTGAAGAGA 60.410 57.143 30.80 9.75 34.13 3.10
191 192 1.953686 GATCCTCGAGGGTGAAGAGAG 59.046 57.143 30.80 1.44 34.13 3.20
192 193 0.681564 TCCTCGAGGGTGAAGAGAGC 60.682 60.000 30.80 0.00 34.13 4.09
193 194 1.671901 CCTCGAGGGTGAAGAGAGCC 61.672 65.000 24.62 0.00 34.13 4.70
194 195 0.682855 CTCGAGGGTGAAGAGAGCCT 60.683 60.000 3.91 0.00 46.81 4.58
196 197 4.470764 AGGGTGAAGAGAGCCTCC 57.529 61.111 0.00 0.00 39.82 4.30
197 198 1.787112 AGGGTGAAGAGAGCCTCCT 59.213 57.895 0.00 0.00 39.82 3.69
198 199 1.011595 AGGGTGAAGAGAGCCTCCTA 58.988 55.000 0.00 0.00 39.82 2.94
199 200 1.063266 AGGGTGAAGAGAGCCTCCTAG 60.063 57.143 0.00 0.00 39.82 3.02
200 201 1.408969 GGTGAAGAGAGCCTCCTAGG 58.591 60.000 0.82 0.82 38.80 3.02
201 202 1.342574 GGTGAAGAGAGCCTCCTAGGT 60.343 57.143 9.08 0.00 37.80 3.08
202 203 1.754226 GTGAAGAGAGCCTCCTAGGTG 59.246 57.143 9.08 6.22 37.80 4.00
203 204 1.359474 TGAAGAGAGCCTCCTAGGTGT 59.641 52.381 9.08 0.00 37.80 4.16
204 205 2.028876 GAAGAGAGCCTCCTAGGTGTC 58.971 57.143 9.08 0.00 37.80 3.67
205 206 0.260523 AGAGAGCCTCCTAGGTGTCC 59.739 60.000 9.08 0.00 37.80 4.02
206 207 0.033011 GAGAGCCTCCTAGGTGTCCA 60.033 60.000 9.08 0.00 37.80 4.02
207 208 0.639392 AGAGCCTCCTAGGTGTCCAT 59.361 55.000 9.08 0.00 37.80 3.41
208 209 1.008938 AGAGCCTCCTAGGTGTCCATT 59.991 52.381 9.08 0.00 37.80 3.16
209 210 1.139853 GAGCCTCCTAGGTGTCCATTG 59.860 57.143 9.08 0.00 37.80 2.82
210 211 0.464554 GCCTCCTAGGTGTCCATTGC 60.465 60.000 9.08 0.16 37.80 3.56
211 212 0.181350 CCTCCTAGGTGTCCATTGCC 59.819 60.000 9.08 0.00 0.00 4.52
212 213 0.911769 CTCCTAGGTGTCCATTGCCA 59.088 55.000 9.08 0.00 0.00 4.92
213 214 0.911769 TCCTAGGTGTCCATTGCCAG 59.088 55.000 9.08 0.00 0.00 4.85
214 215 0.749454 CCTAGGTGTCCATTGCCAGC 60.749 60.000 0.00 0.00 0.00 4.85
215 216 0.254178 CTAGGTGTCCATTGCCAGCT 59.746 55.000 10.01 10.01 41.81 4.24
216 217 0.035152 TAGGTGTCCATTGCCAGCTG 60.035 55.000 6.78 6.78 39.55 4.24
217 218 2.345760 GGTGTCCATTGCCAGCTGG 61.346 63.158 29.34 29.34 38.53 4.85
265 266 4.699522 GCGAACCGGCTGAAGGGT 62.700 66.667 0.00 0.00 38.44 4.34
266 267 2.434359 CGAACCGGCTGAAGGGTC 60.434 66.667 0.00 0.00 41.93 4.46
267 268 2.434359 GAACCGGCTGAAGGGTCG 60.434 66.667 0.00 0.00 35.56 4.79
268 269 2.920912 AACCGGCTGAAGGGTCGA 60.921 61.111 0.00 0.00 36.31 4.20
269 270 2.240162 GAACCGGCTGAAGGGTCGAT 62.240 60.000 0.00 0.00 35.56 3.59
270 271 2.202932 CCGGCTGAAGGGTCGATG 60.203 66.667 0.00 0.00 36.31 3.84
271 272 2.721167 CCGGCTGAAGGGTCGATGA 61.721 63.158 0.00 0.00 36.31 2.92
272 273 1.519455 CGGCTGAAGGGTCGATGAC 60.519 63.158 0.00 0.00 36.31 3.06
273 274 1.519455 GGCTGAAGGGTCGATGACG 60.519 63.158 0.00 0.00 41.26 4.35
274 275 1.519455 GCTGAAGGGTCGATGACGG 60.519 63.158 0.00 0.00 40.21 4.79
275 276 1.141881 CTGAAGGGTCGATGACGGG 59.858 63.158 0.00 0.00 40.21 5.28
276 277 1.605058 CTGAAGGGTCGATGACGGGT 61.605 60.000 0.00 0.00 40.21 5.28
277 278 1.153628 GAAGGGTCGATGACGGGTG 60.154 63.158 0.00 0.00 40.21 4.61
278 279 2.573609 GAAGGGTCGATGACGGGTGG 62.574 65.000 0.00 0.00 40.21 4.61
279 280 3.072468 GGGTCGATGACGGGTGGA 61.072 66.667 0.00 0.00 40.21 4.02
280 281 2.432300 GGGTCGATGACGGGTGGAT 61.432 63.158 0.00 0.00 40.21 3.41
281 282 1.067582 GGTCGATGACGGGTGGATC 59.932 63.158 0.00 0.00 40.21 3.36
282 283 1.299165 GTCGATGACGGGTGGATCG 60.299 63.158 0.00 0.00 40.26 3.69
283 284 2.658593 CGATGACGGGTGGATCGC 60.659 66.667 0.00 0.00 33.26 4.58
284 285 2.815308 GATGACGGGTGGATCGCT 59.185 61.111 0.00 0.00 0.00 4.93
285 286 1.592669 GATGACGGGTGGATCGCTG 60.593 63.158 0.00 0.00 0.00 5.18
286 287 2.978452 GATGACGGGTGGATCGCTGG 62.978 65.000 0.00 0.00 0.00 4.85
287 288 4.530857 GACGGGTGGATCGCTGGG 62.531 72.222 0.00 0.00 0.00 4.45
309 310 3.140141 CGCGGGGCCAATGTCATT 61.140 61.111 4.39 0.00 0.00 2.57
310 311 2.709883 CGCGGGGCCAATGTCATTT 61.710 57.895 4.39 0.00 0.00 2.32
311 312 1.153588 GCGGGGCCAATGTCATTTG 60.154 57.895 4.39 0.00 0.00 2.32
318 319 2.282701 CCAATGTCATTTGGCGAAGG 57.717 50.000 0.00 0.00 39.76 3.46
329 330 3.712881 GCGAAGGCCGTCACACAC 61.713 66.667 19.13 0.00 41.15 3.82
330 331 3.041940 CGAAGGCCGTCACACACC 61.042 66.667 19.13 0.00 0.00 4.16
331 332 2.668550 GAAGGCCGTCACACACCC 60.669 66.667 14.36 0.00 0.00 4.61
332 333 4.619227 AAGGCCGTCACACACCCG 62.619 66.667 0.00 0.00 0.00 5.28
348 349 3.140141 CGCGGGGCCAATGTCATT 61.140 61.111 4.39 0.00 0.00 2.57
349 350 2.709883 CGCGGGGCCAATGTCATTT 61.710 57.895 4.39 0.00 0.00 2.32
363 364 3.252400 TGTCATTTGGCGATGCATTTTC 58.748 40.909 0.00 0.00 0.00 2.29
365 366 1.935199 CATTTGGCGATGCATTTTCCC 59.065 47.619 0.00 0.00 0.00 3.97
381 382 2.264794 CCGGGTCTTTAGCACGCT 59.735 61.111 0.00 0.00 0.00 5.07
394 395 1.168714 GCACGCTCCAAAATCTCCTT 58.831 50.000 0.00 0.00 0.00 3.36
432 436 3.477530 GTGCACCACTCTAAGAAAAGGT 58.522 45.455 5.22 0.00 0.00 3.50
451 455 2.203800 TCATCAACTATGACGCGGTC 57.796 50.000 12.47 6.39 39.77 4.79
452 456 1.749063 TCATCAACTATGACGCGGTCT 59.251 47.619 12.47 0.00 39.77 3.85
458 462 1.271379 ACTATGACGCGGTCTTGTTGA 59.729 47.619 12.47 0.00 33.15 3.18
460 464 1.588674 ATGACGCGGTCTTGTTGAAA 58.411 45.000 12.47 0.00 33.15 2.69
469 473 2.987046 GTCTTGTTGAAAAGACCAGCG 58.013 47.619 5.91 0.00 46.88 5.18
498 502 0.179081 GACCGCCGCCTTCTAAATCT 60.179 55.000 0.00 0.00 0.00 2.40
528 532 1.871077 GGTAACCTCCGCCAAAACG 59.129 57.895 0.00 0.00 0.00 3.60
537 541 2.725815 GCCAAAACGCGTGCAGTC 60.726 61.111 14.98 0.00 0.00 3.51
555 559 2.649349 GCGAGCGAGCGTGACTAG 60.649 66.667 0.00 0.00 0.00 2.57
556 560 2.649349 CGAGCGAGCGTGACTAGC 60.649 66.667 0.00 0.00 46.50 3.42
566 570 1.565305 CGTGACTAGCAATGCTCCTC 58.435 55.000 12.53 8.09 40.44 3.71
571 575 2.433970 GACTAGCAATGCTCCTCCTCTT 59.566 50.000 12.53 0.00 40.44 2.85
574 578 1.064832 AGCAATGCTCCTCCTCTTTCC 60.065 52.381 0.00 0.00 30.62 3.13
589 595 7.491696 CCTCCTCTTTCCTGTTTATAACTAACG 59.508 40.741 0.00 0.00 0.00 3.18
656 686 6.474140 ACCATACTGTTATACCAATCGTCA 57.526 37.500 0.00 0.00 0.00 4.35
658 688 5.405571 CCATACTGTTATACCAATCGTCAGC 59.594 44.000 0.00 0.00 0.00 4.26
663 693 5.919755 TGTTATACCAATCGTCAGCCAATA 58.080 37.500 0.00 0.00 0.00 1.90
671 701 5.530915 CCAATCGTCAGCCAATATAGGAAAA 59.469 40.000 0.00 0.00 0.00 2.29
673 703 5.092554 TCGTCAGCCAATATAGGAAAACA 57.907 39.130 0.00 0.00 0.00 2.83
688 719 4.902448 AGGAAAACAAGTGAGTCTAGGAGT 59.098 41.667 0.00 0.00 0.00 3.85
696 727 3.060602 GTGAGTCTAGGAGTGCACAAAC 58.939 50.000 21.04 8.50 0.00 2.93
727 768 6.394025 ACCTAGATCCGTCAAATACTTCTC 57.606 41.667 0.00 0.00 0.00 2.87
761 802 5.277825 TGCTTTCCATTTTGTAAACGACTG 58.722 37.500 0.00 0.00 0.00 3.51
830 871 0.807667 AGATCATCAACGTGCGGCTC 60.808 55.000 0.00 0.00 0.00 4.70
837 878 0.647410 CAACGTGCGGCTCAGATAAG 59.353 55.000 0.00 0.00 0.00 1.73
847 888 3.326836 GCTCAGATAAGCCTGTATCCC 57.673 52.381 0.00 0.00 36.22 3.85
849 890 3.326297 GCTCAGATAAGCCTGTATCCCTT 59.674 47.826 0.00 0.00 36.22 3.95
1331 1372 0.532573 GACTTCGAGATGCCAGGTGA 59.467 55.000 0.00 0.00 0.00 4.02
1458 1521 2.124570 GCGGATGGTGCAGGTGAT 60.125 61.111 0.00 0.00 0.00 3.06
1536 1599 1.450531 ATGCTGCTTAATGCCTCGCC 61.451 55.000 0.00 0.00 42.00 5.54
1540 1603 0.181114 TGCTTAATGCCTCGCCATCT 59.819 50.000 0.00 0.00 42.00 2.90
1597 1688 4.142049 CCAAGTAAGCCACCTAGAAGAGAG 60.142 50.000 0.00 0.00 0.00 3.20
1660 1752 6.427547 TCAATTTCAGTTGGATCAAATTTGCC 59.572 34.615 13.54 10.24 0.00 4.52
1678 1770 6.801539 TTTGCCTTTACTAGTCTTCATGTG 57.198 37.500 0.00 0.00 0.00 3.21
1680 1772 4.253685 GCCTTTACTAGTCTTCATGTGCA 58.746 43.478 0.00 0.00 0.00 4.57
1778 1870 6.357579 TGATTATTGCCCTGTTTCAATGTT 57.642 33.333 0.00 0.00 34.95 2.71
1847 1939 3.262420 CAGCGCTAGAAGGTTAACATGT 58.738 45.455 10.99 0.00 0.00 3.21
1888 1980 3.932089 GGTTGCTCAAACAATGTTGTGTT 59.068 39.130 0.00 0.00 43.58 3.32
1929 2022 5.905913 TCCCCTTTTTCTCAATTGGGTTTTA 59.094 36.000 4.96 0.00 33.13 1.52
2062 2155 1.830477 CCCTCCAGACTCAGAAGAAGG 59.170 57.143 0.00 0.00 0.00 3.46
2069 2162 4.082845 CAGACTCAGAAGAAGGTGGACTA 58.917 47.826 0.00 0.00 0.00 2.59
2167 2260 3.967987 ACAGGTTGGTTTAGTCAGTCTCT 59.032 43.478 0.00 0.00 0.00 3.10
2173 2266 6.127026 GGTTGGTTTAGTCAGTCTCTGGATAT 60.127 42.308 0.00 0.00 31.51 1.63
2176 2269 6.096987 TGGTTTAGTCAGTCTCTGGATATCAC 59.903 42.308 4.83 0.00 31.51 3.06
2304 2399 2.979130 GCAGGAAGCAGATACGGTC 58.021 57.895 0.00 0.00 44.79 4.79
2392 2491 3.383185 TGGTTCTACTTTTGCTTTGGGTG 59.617 43.478 0.00 0.00 0.00 4.61
2402 2501 3.006112 TGCTTTGGGTGAGTTAACACA 57.994 42.857 8.61 4.83 41.88 3.72
2410 2509 4.522405 TGGGTGAGTTAACACATCCATTTG 59.478 41.667 27.89 0.00 41.68 2.32
2411 2510 4.764823 GGGTGAGTTAACACATCCATTTGA 59.235 41.667 25.18 0.00 41.88 2.69
2594 2695 7.038445 CCTGATTATGGAGATGGTCAACTAGAT 60.038 40.741 0.00 0.00 0.00 1.98
2732 2834 3.908643 AAAAGTTACTCCCTCCGATCC 57.091 47.619 0.00 0.00 0.00 3.36
2733 2835 2.544844 AAGTTACTCCCTCCGATCCA 57.455 50.000 0.00 0.00 0.00 3.41
2734 2836 2.777459 AGTTACTCCCTCCGATCCAT 57.223 50.000 0.00 0.00 0.00 3.41
2735 2837 3.897657 AGTTACTCCCTCCGATCCATA 57.102 47.619 0.00 0.00 0.00 2.74
2736 2838 4.405756 AGTTACTCCCTCCGATCCATAT 57.594 45.455 0.00 0.00 0.00 1.78
2737 2839 4.753186 AGTTACTCCCTCCGATCCATATT 58.247 43.478 0.00 0.00 0.00 1.28
2738 2840 5.900437 AGTTACTCCCTCCGATCCATATTA 58.100 41.667 0.00 0.00 0.00 0.98
2739 2841 5.715753 AGTTACTCCCTCCGATCCATATTAC 59.284 44.000 0.00 0.00 0.00 1.89
2740 2842 4.405756 ACTCCCTCCGATCCATATTACT 57.594 45.455 0.00 0.00 0.00 2.24
2741 2843 4.753186 ACTCCCTCCGATCCATATTACTT 58.247 43.478 0.00 0.00 0.00 2.24
2742 2844 4.528596 ACTCCCTCCGATCCATATTACTTG 59.471 45.833 0.00 0.00 0.00 3.16
2743 2845 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
2744 2846 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
2745 2847 4.486090 CCTCCGATCCATATTACTTGTCG 58.514 47.826 0.00 0.00 0.00 4.35
2746 2848 3.909430 TCCGATCCATATTACTTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
2747 2849 3.572682 TCCGATCCATATTACTTGTCGCT 59.427 43.478 0.00 0.00 0.00 4.93
2748 2850 3.675225 CCGATCCATATTACTTGTCGCTG 59.325 47.826 0.00 0.00 0.00 5.18
2749 2851 3.121944 CGATCCATATTACTTGTCGCTGC 59.878 47.826 0.00 0.00 0.00 5.25
2750 2852 3.819564 TCCATATTACTTGTCGCTGCT 57.180 42.857 0.00 0.00 0.00 4.24
2751 2853 4.137116 TCCATATTACTTGTCGCTGCTT 57.863 40.909 0.00 0.00 0.00 3.91
2752 2854 4.119862 TCCATATTACTTGTCGCTGCTTC 58.880 43.478 0.00 0.00 0.00 3.86
2753 2855 3.871006 CCATATTACTTGTCGCTGCTTCA 59.129 43.478 0.00 0.00 0.00 3.02
2754 2856 4.025396 CCATATTACTTGTCGCTGCTTCAG 60.025 45.833 0.00 0.00 34.12 3.02
2755 2857 2.526304 TTACTTGTCGCTGCTTCAGT 57.474 45.000 0.00 0.00 33.43 3.41
2756 2858 3.653539 TTACTTGTCGCTGCTTCAGTA 57.346 42.857 0.00 0.00 33.43 2.74
2757 2859 1.784525 ACTTGTCGCTGCTTCAGTAC 58.215 50.000 0.00 0.00 33.43 2.73
2758 2860 1.068588 ACTTGTCGCTGCTTCAGTACA 59.931 47.619 0.00 0.00 33.43 2.90
2759 2861 2.135139 CTTGTCGCTGCTTCAGTACAA 58.865 47.619 0.00 12.67 37.25 2.41
2760 2862 1.783284 TGTCGCTGCTTCAGTACAAG 58.217 50.000 0.00 0.00 33.43 3.16
2761 2863 1.068588 TGTCGCTGCTTCAGTACAAGT 59.931 47.619 0.00 0.00 33.43 3.16
2762 2864 2.135933 GTCGCTGCTTCAGTACAAGTT 58.864 47.619 0.00 0.00 33.43 2.66
2763 2865 2.544267 GTCGCTGCTTCAGTACAAGTTT 59.456 45.455 0.00 0.00 33.43 2.66
2764 2866 3.739300 GTCGCTGCTTCAGTACAAGTTTA 59.261 43.478 0.00 0.00 33.43 2.01
2765 2867 4.210537 GTCGCTGCTTCAGTACAAGTTTAA 59.789 41.667 0.00 0.00 33.43 1.52
2766 2868 4.994852 TCGCTGCTTCAGTACAAGTTTAAT 59.005 37.500 0.00 0.00 33.43 1.40
2767 2869 6.090358 GTCGCTGCTTCAGTACAAGTTTAATA 59.910 38.462 0.00 0.00 33.43 0.98
2768 2870 6.816640 TCGCTGCTTCAGTACAAGTTTAATAT 59.183 34.615 0.00 0.00 33.43 1.28
2769 2871 7.977293 TCGCTGCTTCAGTACAAGTTTAATATA 59.023 33.333 0.00 0.00 33.43 0.86
2770 2872 8.765219 CGCTGCTTCAGTACAAGTTTAATATAT 58.235 33.333 0.00 0.00 33.43 0.86
2791 2893 9.976511 ATATATAAAGTTGTACTAAAGCAGCGA 57.023 29.630 0.00 0.00 0.00 4.93
2792 2894 4.727235 AAAGTTGTACTAAAGCAGCGAC 57.273 40.909 0.00 0.00 0.00 5.19
2793 2895 3.380479 AGTTGTACTAAAGCAGCGACA 57.620 42.857 0.00 0.00 0.00 4.35
2794 2896 3.724374 AGTTGTACTAAAGCAGCGACAA 58.276 40.909 0.00 0.00 33.29 3.18
2795 2897 3.741344 AGTTGTACTAAAGCAGCGACAAG 59.259 43.478 0.00 0.00 35.28 3.16
2796 2898 3.380479 TGTACTAAAGCAGCGACAAGT 57.620 42.857 0.00 0.00 0.00 3.16
2797 2899 4.508461 TGTACTAAAGCAGCGACAAGTA 57.492 40.909 0.00 0.00 0.00 2.24
2798 2900 4.873817 TGTACTAAAGCAGCGACAAGTAA 58.126 39.130 0.00 0.00 0.00 2.24
2799 2901 5.475719 TGTACTAAAGCAGCGACAAGTAAT 58.524 37.500 0.00 0.00 0.00 1.89
2800 2902 6.623486 TGTACTAAAGCAGCGACAAGTAATA 58.377 36.000 0.00 0.00 0.00 0.98
2801 2903 7.262772 TGTACTAAAGCAGCGACAAGTAATAT 58.737 34.615 0.00 0.00 0.00 1.28
2802 2904 6.589830 ACTAAAGCAGCGACAAGTAATATG 57.410 37.500 0.00 0.00 0.00 1.78
2803 2905 4.882671 AAAGCAGCGACAAGTAATATGG 57.117 40.909 0.00 0.00 0.00 2.74
2804 2906 3.819564 AGCAGCGACAAGTAATATGGA 57.180 42.857 0.00 0.00 0.00 3.41
2805 2907 4.342862 AGCAGCGACAAGTAATATGGAT 57.657 40.909 0.00 0.00 0.00 3.41
2806 2908 4.310769 AGCAGCGACAAGTAATATGGATC 58.689 43.478 0.00 0.00 0.00 3.36
2807 2909 3.121944 GCAGCGACAAGTAATATGGATCG 59.878 47.826 0.00 0.00 0.00 3.69
2808 2910 3.675225 CAGCGACAAGTAATATGGATCGG 59.325 47.826 0.00 0.00 0.00 4.18
2809 2911 3.572682 AGCGACAAGTAATATGGATCGGA 59.427 43.478 0.00 0.00 0.00 4.55
2810 2912 3.921021 GCGACAAGTAATATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
2811 2913 4.486090 CGACAAGTAATATGGATCGGAGG 58.514 47.826 0.00 0.00 0.00 4.30
2812 2914 4.618460 CGACAAGTAATATGGATCGGAGGG 60.618 50.000 0.00 0.00 0.00 4.30
2813 2915 4.489737 ACAAGTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
2814 2916 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
2835 2937 0.951558 ACATTTGCTTGACCGTGTCC 59.048 50.000 2.23 0.00 0.00 4.02
2839 2941 0.107643 TTGCTTGACCGTGTCCATCA 59.892 50.000 2.23 0.00 0.00 3.07
2848 2950 3.596214 ACCGTGTCCATCATTTAGTGAC 58.404 45.455 0.00 0.00 40.28 3.67
2977 3087 1.135083 AGTATCGAAAGTGGTGGCTCG 60.135 52.381 0.00 0.00 0.00 5.03
3030 3140 0.987294 CTTCCCCAGGACATGTGAGT 59.013 55.000 1.15 0.00 0.00 3.41
3036 3146 3.054434 CCCCAGGACATGTGAGTTTGATA 60.054 47.826 1.15 0.00 0.00 2.15
3047 3158 9.842775 ACATGTGAGTTTGATATTATGATGTCT 57.157 29.630 0.00 0.00 0.00 3.41
3153 3290 5.582665 GCCTTTTCTTCTGAACAGATATCGT 59.417 40.000 5.34 0.00 37.29 3.73
3250 3387 4.002982 TGTAAGCATTCAAGCTACCTGTG 58.997 43.478 0.00 0.00 45.89 3.66
3297 3435 2.542205 CCATGTGTGTCACTGCAAAGTG 60.542 50.000 4.27 0.00 40.90 3.16
3389 3528 5.331980 GCATAACGGTTACAAAACTTTGCAC 60.332 40.000 2.10 0.28 41.79 4.57
3593 3732 6.098409 TCTCCAGGTACTTATCTTCACCATTC 59.902 42.308 0.00 0.00 34.60 2.67
4016 4157 5.423886 AGTATCTAAGAGAGCTTTTGTGGC 58.576 41.667 0.00 0.00 35.56 5.01
4017 4158 4.566426 ATCTAAGAGAGCTTTTGTGGCT 57.434 40.909 0.00 0.00 43.26 4.75
4018 4159 4.357918 TCTAAGAGAGCTTTTGTGGCTT 57.642 40.909 0.00 0.00 40.40 4.35
4019 4160 4.718961 TCTAAGAGAGCTTTTGTGGCTTT 58.281 39.130 0.00 0.00 40.40 3.51
4020 4161 5.133221 TCTAAGAGAGCTTTTGTGGCTTTT 58.867 37.500 0.00 0.00 40.40 2.27
4021 4162 3.722728 AGAGAGCTTTTGTGGCTTTTG 57.277 42.857 0.00 0.00 40.40 2.44
4022 4163 3.026694 AGAGAGCTTTTGTGGCTTTTGT 58.973 40.909 0.00 0.00 40.40 2.83
4023 4164 3.118542 GAGAGCTTTTGTGGCTTTTGTG 58.881 45.455 0.00 0.00 40.40 3.33
4190 4331 5.161358 CAGATCGCTTTTCAGTACAGTGTA 58.839 41.667 0.00 0.00 0.00 2.90
4281 4422 9.547279 AACTATTTAATTTCCCAGACATCCTTT 57.453 29.630 0.00 0.00 0.00 3.11
4317 4458 4.437390 CGTTAACTAGCTTTTGGATGCCTG 60.437 45.833 3.71 0.00 0.00 4.85
4678 4827 8.131847 TGTAGATATTCAGCAGCTTGAGATAT 57.868 34.615 0.00 0.00 0.00 1.63
4686 4835 6.354938 TCAGCAGCTTGAGATATGAAAGATT 58.645 36.000 0.00 0.00 0.00 2.40
4691 4840 7.194278 CAGCTTGAGATATGAAAGATTGTTGG 58.806 38.462 0.00 0.00 0.00 3.77
4709 4858 3.492102 TGGCAGATAAATGTAGGAGGC 57.508 47.619 0.00 0.00 0.00 4.70
5107 5257 2.242043 CCCCATCTGCAAATGATACCC 58.758 52.381 0.28 0.00 0.00 3.69
5123 5273 2.239681 ACCCCAGTTTGTGTTTGGAA 57.760 45.000 0.00 0.00 33.76 3.53
5238 5391 4.006026 CGTTTTGTACGGTTCACAAAGT 57.994 40.909 8.67 0.00 44.30 2.66
5383 5536 6.875926 ATGCGAATTAATTTTCTCACTTGC 57.124 33.333 1.43 0.00 0.00 4.01
5484 5637 9.379791 CTTTTAATTTCGTACTCCTCACCTAAT 57.620 33.333 0.00 0.00 0.00 1.73
5607 5760 1.066152 TCATCGACTGCTGATCCTTCG 59.934 52.381 0.00 0.00 0.00 3.79
5802 5959 0.881118 CAATTGTTCGTGGGGGACAG 59.119 55.000 0.00 0.00 0.00 3.51
5805 5962 2.047213 TTGTTCGTGGGGGACAGGAC 62.047 60.000 0.00 0.00 43.10 3.85
5866 6023 3.971305 AGATGTTGATGGTTCCGGGTATA 59.029 43.478 0.00 0.00 0.00 1.47
5868 6025 3.109151 TGTTGATGGTTCCGGGTATACT 58.891 45.455 0.00 0.00 0.00 2.12
5913 6070 1.336332 CGCGAGGGTATCAGGAATGAG 60.336 57.143 0.00 0.00 0.00 2.90
6171 6328 5.365605 TGGTCTGTCAGAGAAAAACCTTCTA 59.634 40.000 1.75 0.00 30.26 2.10
6266 6423 6.660521 TGAAAAGGATAGCACATGAGTTTCAT 59.339 34.615 0.00 0.00 37.65 2.57
6326 6483 2.642154 TCTCATCTACTCCCTCCGTC 57.358 55.000 0.00 0.00 0.00 4.79
6328 6485 0.185416 TCATCTACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
6329 6486 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
6330 6487 0.106116 ATCTACTCCCTCCGTCCCAC 60.106 60.000 0.00 0.00 0.00 4.61
6339 6496 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
6340 6497 3.583086 CCCTCCGTCCCACAATATAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
6342 6499 4.997395 CCTCCGTCCCACAATATAAGATTG 59.003 45.833 0.00 0.00 35.29 2.67
6347 6504 7.394923 TCCGTCCCACAATATAAGATTGTTTTT 59.605 33.333 0.00 0.00 39.94 1.94
6348 6505 7.700656 CCGTCCCACAATATAAGATTGTTTTTC 59.299 37.037 0.00 0.00 39.94 2.29
6350 6507 9.921637 GTCCCACAATATAAGATTGTTTTTCAA 57.078 29.630 0.00 0.00 39.94 2.69
6352 6509 8.872845 CCCACAATATAAGATTGTTTTTCAAGC 58.127 33.333 0.00 0.00 39.94 4.01
6377 6534 8.818141 CTAATATAGCTTGAAAACCGATCTCA 57.182 34.615 0.00 0.00 0.00 3.27
6378 6535 7.484035 AATATAGCTTGAAAACCGATCTCAC 57.516 36.000 0.00 0.00 0.00 3.51
6379 6536 3.126001 AGCTTGAAAACCGATCTCACA 57.874 42.857 0.00 0.00 0.00 3.58
6382 6539 4.154918 AGCTTGAAAACCGATCTCACAATC 59.845 41.667 0.00 0.00 0.00 2.67
6383 6540 4.154918 GCTTGAAAACCGATCTCACAATCT 59.845 41.667 0.00 0.00 0.00 2.40
6385 6542 6.128282 GCTTGAAAACCGATCTCACAATCTAA 60.128 38.462 0.00 0.00 0.00 2.10
6387 6544 6.697395 TGAAAACCGATCTCACAATCTAAGA 58.303 36.000 0.00 0.00 0.00 2.10
6388 6545 7.331026 TGAAAACCGATCTCACAATCTAAGAT 58.669 34.615 0.00 0.00 32.53 2.40
6389 6546 7.492669 TGAAAACCGATCTCACAATCTAAGATC 59.507 37.037 0.00 0.00 41.21 2.75
6397 6554 8.777865 ATCTCACAATCTAAGATCGTTTTTCA 57.222 30.769 0.00 0.00 0.00 2.69
6401 6558 9.219603 TCACAATCTAAGATCGTTTTTCAAGAT 57.780 29.630 0.00 0.00 0.00 2.40
6424 6581 9.035890 AGATAATGATCTTATATTGTGGGACGA 57.964 33.333 0.00 0.00 39.56 4.20
6459 6712 3.311106 CAGTGCGAGTGAATGCAATTTT 58.689 40.909 0.00 0.00 43.75 1.82
6481 6734 1.410850 GGGAGATTCTGATCCGGGCA 61.411 60.000 0.00 0.00 36.38 5.36
6482 6735 0.250081 GGAGATTCTGATCCGGGCAC 60.250 60.000 0.00 0.00 32.44 5.01
6505 6758 2.042842 TGCCAGGGAAATGGATTCTTCA 59.957 45.455 0.00 0.00 43.57 3.02
6536 6789 3.006112 TCTTGAGACGATGGTAGAGCT 57.994 47.619 0.00 0.00 0.00 4.09
6601 6854 6.096695 TGCCTTTTATTCCTTTTTGATACGC 58.903 36.000 0.00 0.00 0.00 4.42
6602 6855 6.071616 TGCCTTTTATTCCTTTTTGATACGCT 60.072 34.615 0.00 0.00 0.00 5.07
6603 6856 7.121463 TGCCTTTTATTCCTTTTTGATACGCTA 59.879 33.333 0.00 0.00 0.00 4.26
6604 6857 8.135529 GCCTTTTATTCCTTTTTGATACGCTAT 58.864 33.333 0.00 0.00 0.00 2.97
6643 6896 6.074648 ACCAAAGAAAAATACAGATGGGTCA 58.925 36.000 0.00 0.00 0.00 4.02
6646 6899 8.096414 CCAAAGAAAAATACAGATGGGTCATTT 58.904 33.333 0.00 0.00 0.00 2.32
6672 6925 3.431725 CGGCGAAAACAGGGGAGC 61.432 66.667 0.00 0.00 0.00 4.70
6673 6926 2.034221 GGCGAAAACAGGGGAGCT 59.966 61.111 0.00 0.00 0.00 4.09
6674 6927 1.603739 GGCGAAAACAGGGGAGCTT 60.604 57.895 0.00 0.00 0.00 3.74
6675 6928 1.179174 GGCGAAAACAGGGGAGCTTT 61.179 55.000 0.00 0.00 0.00 3.51
6676 6929 0.241213 GCGAAAACAGGGGAGCTTTC 59.759 55.000 0.00 0.00 0.00 2.62
6694 6959 0.107703 TCCCTGTGATCATCAACGCC 60.108 55.000 0.00 0.00 0.00 5.68
6749 7014 1.903404 CAACCCCTCCTGCAACCAC 60.903 63.158 0.00 0.00 0.00 4.16
6872 7158 7.410800 TTTTGATGAGAAATGCAATGTTGAC 57.589 32.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.943381 CGTTGGGAGGACCTATTTAAACC 59.057 47.826 0.00 0.00 41.11 3.27
1 2 4.835678 TCGTTGGGAGGACCTATTTAAAC 58.164 43.478 0.00 0.00 41.11 2.01
2 3 5.247862 GTTCGTTGGGAGGACCTATTTAAA 58.752 41.667 0.00 0.00 41.11 1.52
3 4 4.323715 GGTTCGTTGGGAGGACCTATTTAA 60.324 45.833 0.00 0.00 41.11 1.52
5 6 2.026542 GGTTCGTTGGGAGGACCTATTT 60.027 50.000 0.00 0.00 41.11 1.40
6 7 1.558294 GGTTCGTTGGGAGGACCTATT 59.442 52.381 0.00 0.00 41.11 1.73
7 8 1.201424 GGTTCGTTGGGAGGACCTAT 58.799 55.000 0.00 0.00 41.11 2.57
8 9 0.178926 TGGTTCGTTGGGAGGACCTA 60.179 55.000 0.00 0.00 41.11 3.08
9 10 0.840722 ATGGTTCGTTGGGAGGACCT 60.841 55.000 0.00 0.00 41.11 3.85
10 11 0.906775 TATGGTTCGTTGGGAGGACC 59.093 55.000 0.00 0.00 40.81 4.46
11 12 1.134491 CCTATGGTTCGTTGGGAGGAC 60.134 57.143 0.00 0.00 0.00 3.85
12 13 1.200519 CCTATGGTTCGTTGGGAGGA 58.799 55.000 0.00 0.00 0.00 3.71
13 14 0.180406 CCCTATGGTTCGTTGGGAGG 59.820 60.000 1.25 0.00 37.56 4.30
14 15 0.909623 ACCCTATGGTTCGTTGGGAG 59.090 55.000 12.33 0.00 44.75 4.30
15 16 1.832998 GTACCCTATGGTTCGTTGGGA 59.167 52.381 12.33 0.00 44.75 4.37
16 17 1.835531 AGTACCCTATGGTTCGTTGGG 59.164 52.381 0.00 5.34 44.75 4.12
17 18 3.622166 AAGTACCCTATGGTTCGTTGG 57.378 47.619 0.00 0.00 44.75 3.77
18 19 4.571919 TGAAAGTACCCTATGGTTCGTTG 58.428 43.478 0.00 0.00 44.75 4.10
19 20 4.895668 TGAAAGTACCCTATGGTTCGTT 57.104 40.909 0.00 0.00 44.75 3.85
20 21 5.431179 AATGAAAGTACCCTATGGTTCGT 57.569 39.130 0.00 0.00 44.75 3.85
21 22 6.404293 CCAAAATGAAAGTACCCTATGGTTCG 60.404 42.308 0.00 0.00 44.75 3.95
22 23 6.436218 ACCAAAATGAAAGTACCCTATGGTTC 59.564 38.462 0.00 0.00 44.75 3.62
23 24 6.319715 ACCAAAATGAAAGTACCCTATGGTT 58.680 36.000 0.00 0.00 44.75 3.67
25 26 5.359860 GGACCAAAATGAAAGTACCCTATGG 59.640 44.000 0.00 0.00 37.80 2.74
26 27 5.949354 TGGACCAAAATGAAAGTACCCTATG 59.051 40.000 0.00 0.00 0.00 2.23
27 28 6.147437 TGGACCAAAATGAAAGTACCCTAT 57.853 37.500 0.00 0.00 0.00 2.57
28 29 5.586155 TGGACCAAAATGAAAGTACCCTA 57.414 39.130 0.00 0.00 0.00 3.53
29 30 4.463050 TGGACCAAAATGAAAGTACCCT 57.537 40.909 0.00 0.00 0.00 4.34
30 31 5.016831 AGATGGACCAAAATGAAAGTACCC 58.983 41.667 0.00 0.00 0.00 3.69
31 32 6.884836 AGTAGATGGACCAAAATGAAAGTACC 59.115 38.462 0.00 0.00 0.00 3.34
32 33 7.923414 AGTAGATGGACCAAAATGAAAGTAC 57.077 36.000 0.00 0.00 0.00 2.73
33 34 7.610305 GGAAGTAGATGGACCAAAATGAAAGTA 59.390 37.037 0.00 0.00 0.00 2.24
34 35 6.434340 GGAAGTAGATGGACCAAAATGAAAGT 59.566 38.462 0.00 0.00 0.00 2.66
35 36 6.127619 GGGAAGTAGATGGACCAAAATGAAAG 60.128 42.308 0.00 0.00 0.00 2.62
36 37 5.714806 GGGAAGTAGATGGACCAAAATGAAA 59.285 40.000 0.00 0.00 0.00 2.69
37 38 5.222233 TGGGAAGTAGATGGACCAAAATGAA 60.222 40.000 0.00 0.00 0.00 2.57
38 39 4.290985 TGGGAAGTAGATGGACCAAAATGA 59.709 41.667 0.00 0.00 0.00 2.57
39 40 4.599041 TGGGAAGTAGATGGACCAAAATG 58.401 43.478 0.00 0.00 0.00 2.32
40 41 4.540099 TCTGGGAAGTAGATGGACCAAAAT 59.460 41.667 0.00 0.00 0.00 1.82
41 42 3.913799 TCTGGGAAGTAGATGGACCAAAA 59.086 43.478 0.00 0.00 0.00 2.44
42 43 3.526899 TCTGGGAAGTAGATGGACCAAA 58.473 45.455 0.00 0.00 0.00 3.28
43 44 3.199442 TCTGGGAAGTAGATGGACCAA 57.801 47.619 0.00 0.00 0.00 3.67
44 45 2.940514 TCTGGGAAGTAGATGGACCA 57.059 50.000 0.00 0.00 0.00 4.02
45 46 2.158885 GCTTCTGGGAAGTAGATGGACC 60.159 54.545 8.73 0.00 0.00 4.46
46 47 2.501723 TGCTTCTGGGAAGTAGATGGAC 59.498 50.000 8.73 0.00 0.00 4.02
47 48 2.768527 CTGCTTCTGGGAAGTAGATGGA 59.231 50.000 16.48 0.00 32.68 3.41
48 49 2.744494 GCTGCTTCTGGGAAGTAGATGG 60.744 54.545 22.67 4.49 32.68 3.51
49 50 2.093288 TGCTGCTTCTGGGAAGTAGATG 60.093 50.000 22.67 4.77 32.68 2.90
50 51 2.093235 GTGCTGCTTCTGGGAAGTAGAT 60.093 50.000 22.67 0.00 32.68 1.98
51 52 1.276421 GTGCTGCTTCTGGGAAGTAGA 59.724 52.381 22.67 9.92 32.68 2.59
52 53 1.731720 GTGCTGCTTCTGGGAAGTAG 58.268 55.000 16.93 16.93 33.85 2.57
53 54 0.037326 CGTGCTGCTTCTGGGAAGTA 60.037 55.000 0.00 3.98 0.00 2.24
54 55 1.302033 CGTGCTGCTTCTGGGAAGT 60.302 57.895 0.00 0.00 0.00 3.01
55 56 0.392193 ATCGTGCTGCTTCTGGGAAG 60.392 55.000 0.00 3.22 0.00 3.46
56 57 0.391661 GATCGTGCTGCTTCTGGGAA 60.392 55.000 0.00 0.00 0.00 3.97
57 58 1.219124 GATCGTGCTGCTTCTGGGA 59.781 57.895 0.00 0.00 0.00 4.37
58 59 0.674581 TTGATCGTGCTGCTTCTGGG 60.675 55.000 0.00 0.00 0.00 4.45
59 60 1.159285 TTTGATCGTGCTGCTTCTGG 58.841 50.000 0.00 0.00 0.00 3.86
60 61 3.168963 CAATTTGATCGTGCTGCTTCTG 58.831 45.455 0.00 0.00 0.00 3.02
61 62 2.816087 ACAATTTGATCGTGCTGCTTCT 59.184 40.909 2.79 0.00 0.00 2.85
62 63 2.912967 CACAATTTGATCGTGCTGCTTC 59.087 45.455 2.79 0.00 0.00 3.86
63 64 2.294233 ACACAATTTGATCGTGCTGCTT 59.706 40.909 2.79 0.00 33.89 3.91
64 65 1.881973 ACACAATTTGATCGTGCTGCT 59.118 42.857 2.79 0.00 33.89 4.24
65 66 2.245096 GACACAATTTGATCGTGCTGC 58.755 47.619 2.79 0.00 33.89 5.25
66 67 2.226200 TGGACACAATTTGATCGTGCTG 59.774 45.455 2.79 0.00 33.89 4.41
67 68 2.226437 GTGGACACAATTTGATCGTGCT 59.774 45.455 2.79 0.00 33.89 4.40
68 69 2.226437 AGTGGACACAATTTGATCGTGC 59.774 45.455 2.79 3.60 33.89 5.34
69 70 4.221342 CAAGTGGACACAATTTGATCGTG 58.779 43.478 2.79 0.00 31.65 4.35
70 71 3.882888 ACAAGTGGACACAATTTGATCGT 59.117 39.130 2.79 0.00 31.65 3.73
71 72 4.466828 GACAAGTGGACACAATTTGATCG 58.533 43.478 2.79 0.00 31.65 3.69
72 73 4.613622 CGGACAAGTGGACACAATTTGATC 60.614 45.833 2.79 0.49 31.65 2.92
73 74 3.253188 CGGACAAGTGGACACAATTTGAT 59.747 43.478 2.79 0.00 31.65 2.57
74 75 2.616376 CGGACAAGTGGACACAATTTGA 59.384 45.455 2.79 0.00 31.65 2.69
75 76 2.616376 TCGGACAAGTGGACACAATTTG 59.384 45.455 5.14 3.64 31.65 2.32
76 77 2.925724 TCGGACAAGTGGACACAATTT 58.074 42.857 5.14 0.00 31.65 1.82
77 78 2.631160 TCGGACAAGTGGACACAATT 57.369 45.000 5.14 0.00 34.85 2.32
78 79 2.631160 TTCGGACAAGTGGACACAAT 57.369 45.000 5.14 0.00 0.00 2.71
79 80 2.489971 GATTCGGACAAGTGGACACAA 58.510 47.619 5.14 0.00 0.00 3.33
80 81 1.270625 GGATTCGGACAAGTGGACACA 60.271 52.381 5.14 0.00 0.00 3.72
81 82 1.439679 GGATTCGGACAAGTGGACAC 58.560 55.000 0.00 0.00 0.00 3.67
82 83 0.323629 GGGATTCGGACAAGTGGACA 59.676 55.000 0.00 0.00 0.00 4.02
83 84 0.323629 TGGGATTCGGACAAGTGGAC 59.676 55.000 0.00 0.00 0.00 4.02
84 85 1.209504 GATGGGATTCGGACAAGTGGA 59.790 52.381 0.00 0.00 0.00 4.02
85 86 1.065491 TGATGGGATTCGGACAAGTGG 60.065 52.381 0.00 0.00 0.00 4.00
86 87 2.009774 GTGATGGGATTCGGACAAGTG 58.990 52.381 0.00 0.00 0.00 3.16
87 88 1.065418 GGTGATGGGATTCGGACAAGT 60.065 52.381 0.00 0.00 0.00 3.16
88 89 1.065491 TGGTGATGGGATTCGGACAAG 60.065 52.381 0.00 0.00 0.00 3.16
89 90 0.988063 TGGTGATGGGATTCGGACAA 59.012 50.000 0.00 0.00 0.00 3.18
90 91 0.988063 TTGGTGATGGGATTCGGACA 59.012 50.000 0.00 0.00 0.00 4.02
91 92 1.209504 TCTTGGTGATGGGATTCGGAC 59.790 52.381 0.00 0.00 0.00 4.79
92 93 1.578897 TCTTGGTGATGGGATTCGGA 58.421 50.000 0.00 0.00 0.00 4.55
93 94 2.092968 TCTTCTTGGTGATGGGATTCGG 60.093 50.000 0.00 0.00 0.00 4.30
94 95 3.266510 TCTTCTTGGTGATGGGATTCG 57.733 47.619 0.00 0.00 0.00 3.34
95 96 5.982890 TTTTCTTCTTGGTGATGGGATTC 57.017 39.130 0.00 0.00 0.00 2.52
96 97 5.279657 GCTTTTTCTTCTTGGTGATGGGATT 60.280 40.000 0.00 0.00 0.00 3.01
97 98 4.221482 GCTTTTTCTTCTTGGTGATGGGAT 59.779 41.667 0.00 0.00 0.00 3.85
98 99 3.573967 GCTTTTTCTTCTTGGTGATGGGA 59.426 43.478 0.00 0.00 0.00 4.37
99 100 3.612479 CGCTTTTTCTTCTTGGTGATGGG 60.612 47.826 0.00 0.00 0.00 4.00
100 101 3.568538 CGCTTTTTCTTCTTGGTGATGG 58.431 45.455 0.00 0.00 0.00 3.51
101 102 2.982470 GCGCTTTTTCTTCTTGGTGATG 59.018 45.455 0.00 0.00 0.00 3.07
102 103 2.029918 GGCGCTTTTTCTTCTTGGTGAT 60.030 45.455 7.64 0.00 0.00 3.06
103 104 1.336755 GGCGCTTTTTCTTCTTGGTGA 59.663 47.619 7.64 0.00 0.00 4.02
104 105 1.066908 TGGCGCTTTTTCTTCTTGGTG 59.933 47.619 7.64 0.00 0.00 4.17
105 106 1.398692 TGGCGCTTTTTCTTCTTGGT 58.601 45.000 7.64 0.00 0.00 3.67
106 107 2.730550 ATGGCGCTTTTTCTTCTTGG 57.269 45.000 7.64 0.00 0.00 3.61
107 108 2.156310 GCAATGGCGCTTTTTCTTCTTG 59.844 45.455 7.64 0.00 0.00 3.02
108 109 2.224018 TGCAATGGCGCTTTTTCTTCTT 60.224 40.909 7.64 0.00 45.35 2.52
109 110 1.340889 TGCAATGGCGCTTTTTCTTCT 59.659 42.857 7.64 0.00 45.35 2.85
110 111 1.782044 TGCAATGGCGCTTTTTCTTC 58.218 45.000 7.64 0.00 45.35 2.87
111 112 2.070783 CATGCAATGGCGCTTTTTCTT 58.929 42.857 7.64 0.00 45.35 2.52
112 113 1.717194 CATGCAATGGCGCTTTTTCT 58.283 45.000 7.64 0.00 45.35 2.52
120 121 7.554651 CTCTATAGGAGTAACATGCAATGGCG 61.555 46.154 0.00 0.00 42.04 5.69
121 122 5.641209 CTCTATAGGAGTAACATGCAATGGC 59.359 44.000 0.00 0.00 42.04 4.40
135 136 7.254628 GGGTACTCCAACATCCTCTATAGGAG 61.255 50.000 2.97 0.00 44.77 3.69
136 137 5.459241 GGGTACTCCAACATCCTCTATAGGA 60.459 48.000 0.00 0.00 45.25 2.94
137 138 4.773149 GGGTACTCCAACATCCTCTATAGG 59.227 50.000 0.00 0.00 38.80 2.57
138 139 5.394738 TGGGTACTCCAACATCCTCTATAG 58.605 45.833 1.01 0.00 43.84 1.31
139 140 5.412617 TGGGTACTCCAACATCCTCTATA 57.587 43.478 1.01 0.00 43.84 1.31
140 141 4.280789 TGGGTACTCCAACATCCTCTAT 57.719 45.455 1.01 0.00 43.84 1.98
141 142 3.769189 TGGGTACTCCAACATCCTCTA 57.231 47.619 1.01 0.00 43.84 2.43
142 143 2.642171 TGGGTACTCCAACATCCTCT 57.358 50.000 1.01 0.00 43.84 3.69
151 152 0.041238 CCAGAGAGGTGGGTACTCCA 59.959 60.000 0.00 0.00 44.79 3.86
152 153 2.903404 CCAGAGAGGTGGGTACTCC 58.097 63.158 0.00 0.00 35.58 3.85
159 160 1.112315 CGAGGATCCCAGAGAGGTGG 61.112 65.000 8.55 0.00 37.34 4.61
160 161 0.106469 TCGAGGATCCCAGAGAGGTG 60.106 60.000 8.55 0.00 34.66 4.00
161 162 0.184933 CTCGAGGATCCCAGAGAGGT 59.815 60.000 22.85 0.00 34.23 3.85
162 163 0.539438 CCTCGAGGATCCCAGAGAGG 60.539 65.000 28.21 23.72 35.61 3.69
163 164 0.539438 CCCTCGAGGATCCCAGAGAG 60.539 65.000 33.39 20.09 38.24 3.20
164 165 1.289982 ACCCTCGAGGATCCCAGAGA 61.290 60.000 33.39 13.54 39.89 3.10
165 166 1.112315 CACCCTCGAGGATCCCAGAG 61.112 65.000 33.39 21.19 39.89 3.35
166 167 1.075970 CACCCTCGAGGATCCCAGA 60.076 63.158 33.39 7.38 39.89 3.86
167 168 0.687757 TTCACCCTCGAGGATCCCAG 60.688 60.000 33.39 16.91 39.89 4.45
168 169 0.687757 CTTCACCCTCGAGGATCCCA 60.688 60.000 33.39 11.23 39.89 4.37
169 170 0.397254 TCTTCACCCTCGAGGATCCC 60.397 60.000 33.39 0.00 39.89 3.85
170 171 1.036707 CTCTTCACCCTCGAGGATCC 58.963 60.000 33.39 2.48 39.89 3.36
171 172 1.953686 CTCTCTTCACCCTCGAGGATC 59.046 57.143 33.39 0.00 39.89 3.36
172 173 2.026905 GCTCTCTTCACCCTCGAGGAT 61.027 57.143 33.39 14.63 39.89 3.24
173 174 0.681564 GCTCTCTTCACCCTCGAGGA 60.682 60.000 33.39 10.52 39.89 3.71
174 175 1.671901 GGCTCTCTTCACCCTCGAGG 61.672 65.000 25.36 25.36 43.78 4.63
175 176 0.682855 AGGCTCTCTTCACCCTCGAG 60.683 60.000 5.13 5.13 0.00 4.04
176 177 0.681564 GAGGCTCTCTTCACCCTCGA 60.682 60.000 7.40 0.00 35.05 4.04
177 178 1.671901 GGAGGCTCTCTTCACCCTCG 61.672 65.000 15.23 0.00 43.76 4.63
178 179 0.325203 AGGAGGCTCTCTTCACCCTC 60.325 60.000 15.23 0.00 42.45 4.30
179 180 1.011595 TAGGAGGCTCTCTTCACCCT 58.988 55.000 15.23 3.30 0.00 4.34
180 181 1.408969 CTAGGAGGCTCTCTTCACCC 58.591 60.000 15.23 0.00 0.00 4.61
181 182 1.342574 ACCTAGGAGGCTCTCTTCACC 60.343 57.143 17.98 0.00 39.63 4.02
182 183 1.754226 CACCTAGGAGGCTCTCTTCAC 59.246 57.143 17.98 0.00 39.63 3.18
183 184 1.359474 ACACCTAGGAGGCTCTCTTCA 59.641 52.381 17.98 0.00 39.63 3.02
184 185 2.028876 GACACCTAGGAGGCTCTCTTC 58.971 57.143 17.98 0.00 39.63 2.87
185 186 1.342574 GGACACCTAGGAGGCTCTCTT 60.343 57.143 17.98 3.32 39.63 2.85
186 187 0.260523 GGACACCTAGGAGGCTCTCT 59.739 60.000 17.98 12.11 39.63 3.10
187 188 0.033011 TGGACACCTAGGAGGCTCTC 60.033 60.000 17.98 4.64 39.63 3.20
188 189 0.639392 ATGGACACCTAGGAGGCTCT 59.361 55.000 17.98 0.00 39.63 4.09
189 190 1.139853 CAATGGACACCTAGGAGGCTC 59.860 57.143 17.98 5.78 39.63 4.70
190 191 1.207791 CAATGGACACCTAGGAGGCT 58.792 55.000 17.98 0.00 39.63 4.58
191 192 0.464554 GCAATGGACACCTAGGAGGC 60.465 60.000 17.98 10.32 39.63 4.70
192 193 0.181350 GGCAATGGACACCTAGGAGG 59.819 60.000 17.98 9.80 42.49 4.30
193 194 0.911769 TGGCAATGGACACCTAGGAG 59.088 55.000 17.98 10.85 0.00 3.69
194 195 0.911769 CTGGCAATGGACACCTAGGA 59.088 55.000 17.98 0.00 0.00 2.94
195 196 0.749454 GCTGGCAATGGACACCTAGG 60.749 60.000 7.41 7.41 0.00 3.02
196 197 0.254178 AGCTGGCAATGGACACCTAG 59.746 55.000 0.00 0.00 0.00 3.02
197 198 0.035152 CAGCTGGCAATGGACACCTA 60.035 55.000 5.57 0.00 0.00 3.08
198 199 1.303888 CAGCTGGCAATGGACACCT 60.304 57.895 5.57 0.00 0.00 4.00
199 200 2.345760 CCAGCTGGCAATGGACACC 61.346 63.158 22.33 0.00 39.02 4.16
200 201 3.281240 CCAGCTGGCAATGGACAC 58.719 61.111 22.33 0.00 39.02 3.67
218 219 3.708220 GAGAGGCTCCCGCGACAAG 62.708 68.421 8.23 2.37 36.88 3.16
219 220 3.760035 GAGAGGCTCCCGCGACAA 61.760 66.667 8.23 0.00 36.88 3.18
248 249 4.699522 ACCCTTCAGCCGGTTCGC 62.700 66.667 1.90 0.00 0.00 4.70
249 250 2.434359 GACCCTTCAGCCGGTTCG 60.434 66.667 1.90 0.00 30.56 3.95
250 251 2.240162 ATCGACCCTTCAGCCGGTTC 62.240 60.000 1.90 0.00 30.56 3.62
251 252 2.291043 ATCGACCCTTCAGCCGGTT 61.291 57.895 1.90 0.00 30.56 4.44
252 253 2.683933 ATCGACCCTTCAGCCGGT 60.684 61.111 1.90 0.00 34.13 5.28
253 254 2.202932 CATCGACCCTTCAGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
254 255 1.519455 GTCATCGACCCTTCAGCCG 60.519 63.158 0.00 0.00 0.00 5.52
255 256 1.519455 CGTCATCGACCCTTCAGCC 60.519 63.158 0.00 0.00 39.71 4.85
256 257 1.519455 CCGTCATCGACCCTTCAGC 60.519 63.158 0.00 0.00 39.71 4.26
257 258 1.141881 CCCGTCATCGACCCTTCAG 59.858 63.158 0.00 0.00 39.71 3.02
258 259 1.608336 ACCCGTCATCGACCCTTCA 60.608 57.895 0.00 0.00 39.71 3.02
259 260 1.153628 CACCCGTCATCGACCCTTC 60.154 63.158 0.00 0.00 39.71 3.46
260 261 2.656069 CCACCCGTCATCGACCCTT 61.656 63.158 0.00 0.00 39.71 3.95
261 262 2.873557 ATCCACCCGTCATCGACCCT 62.874 60.000 0.00 0.00 39.71 4.34
262 263 2.365095 GATCCACCCGTCATCGACCC 62.365 65.000 0.00 0.00 39.71 4.46
263 264 1.067582 GATCCACCCGTCATCGACC 59.932 63.158 0.00 0.00 39.71 4.79
264 265 1.299165 CGATCCACCCGTCATCGAC 60.299 63.158 0.00 0.00 41.61 4.20
265 266 3.116463 CGATCCACCCGTCATCGA 58.884 61.111 0.00 0.00 41.61 3.59
266 267 2.658593 GCGATCCACCCGTCATCG 60.659 66.667 0.00 0.00 41.92 3.84
267 268 1.592669 CAGCGATCCACCCGTCATC 60.593 63.158 0.00 0.00 0.00 2.92
268 269 2.501128 CAGCGATCCACCCGTCAT 59.499 61.111 0.00 0.00 0.00 3.06
269 270 3.770040 CCAGCGATCCACCCGTCA 61.770 66.667 0.00 0.00 0.00 4.35
270 271 4.530857 CCCAGCGATCCACCCGTC 62.531 72.222 0.00 0.00 0.00 4.79
292 293 2.709883 AAATGACATTGGCCCCGCG 61.710 57.895 0.00 0.00 0.00 6.46
293 294 1.153588 CAAATGACATTGGCCCCGC 60.154 57.895 0.00 0.00 0.00 6.13
294 295 1.516892 CCAAATGACATTGGCCCCG 59.483 57.895 0.00 0.00 43.11 5.73
300 301 1.632422 GCCTTCGCCAAATGACATTG 58.368 50.000 0.34 0.00 0.00 2.82
312 313 3.712881 GTGTGTGACGGCCTTCGC 61.713 66.667 15.55 15.55 43.89 4.70
313 314 3.041940 GGTGTGTGACGGCCTTCG 61.042 66.667 4.57 0.00 45.88 3.79
314 315 2.668550 GGGTGTGTGACGGCCTTC 60.669 66.667 1.37 1.37 0.00 3.46
315 316 4.619227 CGGGTGTGTGACGGCCTT 62.619 66.667 0.00 0.00 0.00 4.35
331 332 2.709883 AAATGACATTGGCCCCGCG 61.710 57.895 0.00 0.00 0.00 6.46
332 333 1.153588 CAAATGACATTGGCCCCGC 60.154 57.895 0.00 0.00 0.00 6.13
333 334 1.516892 CCAAATGACATTGGCCCCG 59.483 57.895 0.00 0.00 43.11 5.73
339 340 2.281140 TGCATCGCCAAATGACATTG 57.719 45.000 0.34 0.00 0.00 2.82
340 341 3.530265 AATGCATCGCCAAATGACATT 57.470 38.095 0.00 0.00 33.01 2.71
341 342 3.530265 AAATGCATCGCCAAATGACAT 57.470 38.095 0.00 0.00 0.00 3.06
342 343 3.252400 GAAAATGCATCGCCAAATGACA 58.748 40.909 0.00 0.00 0.00 3.58
343 344 2.604462 GGAAAATGCATCGCCAAATGAC 59.396 45.455 0.00 0.00 0.00 3.06
344 345 2.418471 GGGAAAATGCATCGCCAAATGA 60.418 45.455 0.00 0.00 0.00 2.57
345 346 1.935199 GGGAAAATGCATCGCCAAATG 59.065 47.619 0.00 0.00 0.00 2.32
346 347 1.471327 CGGGAAAATGCATCGCCAAAT 60.471 47.619 0.00 0.00 0.00 2.32
347 348 0.108898 CGGGAAAATGCATCGCCAAA 60.109 50.000 0.00 0.00 0.00 3.28
348 349 1.510383 CGGGAAAATGCATCGCCAA 59.490 52.632 0.00 0.00 0.00 4.52
349 350 2.413963 CCGGGAAAATGCATCGCCA 61.414 57.895 0.00 0.00 0.00 5.69
363 364 2.818274 GCGTGCTAAAGACCCGGG 60.818 66.667 22.25 22.25 0.00 5.73
365 366 1.810030 GGAGCGTGCTAAAGACCCG 60.810 63.158 0.00 0.00 0.00 5.28
381 382 2.311841 GGAAGGGGAAGGAGATTTTGGA 59.688 50.000 0.00 0.00 0.00 3.53
394 395 1.893315 CACCATTAGGAGGAAGGGGA 58.107 55.000 0.00 0.00 34.49 4.81
432 436 1.749063 AGACCGCGTCATAGTTGATGA 59.251 47.619 4.92 0.00 42.55 2.92
445 449 2.018717 GTCTTTTCAACAAGACCGCG 57.981 50.000 0.00 0.00 44.84 6.46
450 454 1.946768 CCGCTGGTCTTTTCAACAAGA 59.053 47.619 0.00 0.00 0.00 3.02
451 455 1.676006 ACCGCTGGTCTTTTCAACAAG 59.324 47.619 0.00 0.00 0.00 3.16
452 456 1.757682 ACCGCTGGTCTTTTCAACAA 58.242 45.000 0.00 0.00 0.00 2.83
486 490 0.464554 AGCGCCCAGATTTAGAAGGC 60.465 55.000 2.29 0.00 40.33 4.35
490 494 0.178068 GGTGAGCGCCCAGATTTAGA 59.822 55.000 2.29 0.00 0.00 2.10
491 495 1.154205 CGGTGAGCGCCCAGATTTAG 61.154 60.000 2.29 0.00 0.00 1.85
498 502 4.382320 GTTACCGGTGAGCGCCCA 62.382 66.667 19.93 0.00 0.00 5.36
512 516 3.658048 GCGTTTTGGCGGAGGTTA 58.342 55.556 0.00 0.00 0.00 2.85
539 543 2.649349 GCTAGTCACGCTCGCTCG 60.649 66.667 0.00 0.00 33.61 5.03
550 554 2.038659 AGAGGAGGAGCATTGCTAGTC 58.961 52.381 11.96 10.82 39.88 2.59
553 557 2.171448 GGAAAGAGGAGGAGCATTGCTA 59.829 50.000 11.96 0.00 39.88 3.49
555 559 1.064832 AGGAAAGAGGAGGAGCATTGC 60.065 52.381 0.00 0.00 0.00 3.56
556 560 2.026449 ACAGGAAAGAGGAGGAGCATTG 60.026 50.000 0.00 0.00 0.00 2.82
566 570 8.543862 AACGTTAGTTATAAACAGGAAAGAGG 57.456 34.615 0.00 0.00 39.11 3.69
638 668 3.196901 TGGCTGACGATTGGTATAACAGT 59.803 43.478 0.00 0.00 0.00 3.55
641 671 7.277981 CCTATATTGGCTGACGATTGGTATAAC 59.722 40.741 0.00 0.00 0.00 1.89
653 683 6.374333 TCACTTGTTTTCCTATATTGGCTGAC 59.626 38.462 0.00 0.00 0.00 3.51
654 684 6.480763 TCACTTGTTTTCCTATATTGGCTGA 58.519 36.000 0.00 0.00 0.00 4.26
656 686 6.485171 ACTCACTTGTTTTCCTATATTGGCT 58.515 36.000 0.00 0.00 0.00 4.75
658 688 9.319143 CTAGACTCACTTGTTTTCCTATATTGG 57.681 37.037 0.00 0.00 0.00 3.16
663 693 6.726764 ACTCCTAGACTCACTTGTTTTCCTAT 59.273 38.462 0.00 0.00 0.00 2.57
671 701 2.297597 GTGCACTCCTAGACTCACTTGT 59.702 50.000 10.32 0.00 0.00 3.16
673 703 2.598565 TGTGCACTCCTAGACTCACTT 58.401 47.619 19.41 0.00 0.00 3.16
688 719 4.193090 TCTAGGTTTTCTTCGTTTGTGCA 58.807 39.130 0.00 0.00 0.00 4.57
696 727 4.106029 TGACGGATCTAGGTTTTCTTCG 57.894 45.455 0.00 0.00 0.00 3.79
761 802 2.510918 GGCCTAGTTTCGGACGGC 60.511 66.667 0.00 0.00 39.98 5.68
830 871 3.406764 GCAAGGGATACAGGCTTATCTG 58.593 50.000 12.98 0.00 40.40 2.90
837 878 0.733150 GTTTCGCAAGGGATACAGGC 59.267 55.000 3.54 0.00 39.74 4.85
885 926 3.691744 CTGAGACTCGGGCTGACGC 62.692 68.421 3.07 0.00 0.00 5.19
886 927 2.487428 CTGAGACTCGGGCTGACG 59.513 66.667 3.07 0.00 0.00 4.35
887 928 2.716017 CCCTGAGACTCGGGCTGAC 61.716 68.421 23.23 0.00 41.66 3.51
888 929 2.363018 CCCTGAGACTCGGGCTGA 60.363 66.667 23.23 0.00 41.66 4.26
892 933 3.465403 CTGGCCCTGAGACTCGGG 61.465 72.222 21.91 21.91 42.66 5.14
1331 1372 3.590466 AAAGGGAGGCAGGCGCAAT 62.590 57.895 10.83 0.00 41.24 3.56
1536 1599 7.092137 TCCAGCAATACAGAATTTCAAGATG 57.908 36.000 0.00 0.00 0.00 2.90
1540 1603 6.899393 ACTTCCAGCAATACAGAATTTCAA 57.101 33.333 0.00 0.00 0.00 2.69
1660 1752 4.032217 CGCTGCACATGAAGACTAGTAAAG 59.968 45.833 0.00 0.00 0.00 1.85
1678 1770 2.919229 CCAACTGAAATTTGATCGCTGC 59.081 45.455 0.00 0.00 0.00 5.25
1680 1772 4.096984 GGATCCAACTGAAATTTGATCGCT 59.903 41.667 6.95 0.00 0.00 4.93
1778 1870 4.444876 CCAGGAACTCTTCAGAACCTGAAA 60.445 45.833 15.38 2.50 43.45 2.69
1880 1972 5.242434 ACTTGACTCACTAACAACACAACA 58.758 37.500 0.00 0.00 0.00 3.33
1882 1974 6.128117 GGAAACTTGACTCACTAACAACACAA 60.128 38.462 0.00 0.00 0.00 3.33
1888 1980 3.714798 AGGGGAAACTTGACTCACTAACA 59.285 43.478 0.00 0.00 0.00 2.41
2062 2155 1.889530 AAGGGCGACAGCTAGTCCAC 61.890 60.000 8.98 4.82 44.66 4.02
2069 2162 0.392193 CATCTTCAAGGGCGACAGCT 60.392 55.000 0.00 0.00 44.37 4.24
2392 2491 8.816640 AATTGTTCAAATGGATGTGTTAACTC 57.183 30.769 7.22 3.79 0.00 3.01
2420 2519 4.584325 TGCCTACTGACAAGAAGCATTTTT 59.416 37.500 0.00 0.00 0.00 1.94
2594 2695 7.147828 GCATATTGCTCACCATATCTCCTAGTA 60.148 40.741 0.00 0.00 40.96 1.82
2716 2818 5.715753 AGTAATATGGATCGGAGGGAGTAAC 59.284 44.000 0.00 0.00 0.00 2.50
2719 2821 4.405756 AGTAATATGGATCGGAGGGAGT 57.594 45.455 0.00 0.00 0.00 3.85
2720 2822 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
2721 2823 4.489737 ACAAGTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
2722 2824 4.618460 CGACAAGTAATATGGATCGGAGGG 60.618 50.000 0.00 0.00 0.00 4.30
2723 2825 4.486090 CGACAAGTAATATGGATCGGAGG 58.514 47.826 0.00 0.00 0.00 4.30
2724 2826 3.921021 GCGACAAGTAATATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
2725 2827 3.572682 AGCGACAAGTAATATGGATCGGA 59.427 43.478 0.00 0.00 0.00 4.55
2727 2829 3.121944 GCAGCGACAAGTAATATGGATCG 59.878 47.826 0.00 0.00 0.00 3.69
2728 2830 4.310769 AGCAGCGACAAGTAATATGGATC 58.689 43.478 0.00 0.00 0.00 3.36
2729 2831 4.342862 AGCAGCGACAAGTAATATGGAT 57.657 40.909 0.00 0.00 0.00 3.41
2730 2832 3.819564 AGCAGCGACAAGTAATATGGA 57.180 42.857 0.00 0.00 0.00 3.41
2731 2833 3.871006 TGAAGCAGCGACAAGTAATATGG 59.129 43.478 0.00 0.00 0.00 2.74
2732 2834 4.568359 ACTGAAGCAGCGACAAGTAATATG 59.432 41.667 0.00 0.00 34.37 1.78
2733 2835 4.759782 ACTGAAGCAGCGACAAGTAATAT 58.240 39.130 0.00 0.00 34.37 1.28
2734 2836 4.188247 ACTGAAGCAGCGACAAGTAATA 57.812 40.909 0.00 0.00 34.37 0.98
2735 2837 3.045601 ACTGAAGCAGCGACAAGTAAT 57.954 42.857 0.00 0.00 34.37 1.89
2736 2838 2.526304 ACTGAAGCAGCGACAAGTAA 57.474 45.000 0.00 0.00 34.37 2.24
2737 2839 2.295070 TGTACTGAAGCAGCGACAAGTA 59.705 45.455 0.00 0.00 34.37 2.24
2738 2840 1.068588 TGTACTGAAGCAGCGACAAGT 59.931 47.619 0.00 0.00 34.37 3.16
2739 2841 1.783284 TGTACTGAAGCAGCGACAAG 58.217 50.000 0.00 0.00 34.37 3.16
2740 2842 2.135139 CTTGTACTGAAGCAGCGACAA 58.865 47.619 12.21 12.21 37.88 3.18
2741 2843 1.068588 ACTTGTACTGAAGCAGCGACA 59.931 47.619 0.00 0.00 34.37 4.35
2742 2844 1.784525 ACTTGTACTGAAGCAGCGAC 58.215 50.000 0.00 0.00 34.37 5.19
2743 2845 2.526304 AACTTGTACTGAAGCAGCGA 57.474 45.000 0.00 0.00 34.37 4.93
2744 2846 4.725556 TTAAACTTGTACTGAAGCAGCG 57.274 40.909 0.00 0.00 34.37 5.18
2765 2867 9.976511 TCGCTGCTTTAGTACAACTTTATATAT 57.023 29.630 0.00 0.00 0.00 0.86
2766 2868 9.241317 GTCGCTGCTTTAGTACAACTTTATATA 57.759 33.333 0.00 0.00 0.00 0.86
2767 2869 7.762615 TGTCGCTGCTTTAGTACAACTTTATAT 59.237 33.333 0.00 0.00 0.00 0.86
2768 2870 7.092079 TGTCGCTGCTTTAGTACAACTTTATA 58.908 34.615 0.00 0.00 0.00 0.98
2769 2871 5.929992 TGTCGCTGCTTTAGTACAACTTTAT 59.070 36.000 0.00 0.00 0.00 1.40
2770 2872 5.291178 TGTCGCTGCTTTAGTACAACTTTA 58.709 37.500 0.00 0.00 0.00 1.85
2771 2873 4.124238 TGTCGCTGCTTTAGTACAACTTT 58.876 39.130 0.00 0.00 0.00 2.66
2772 2874 3.724374 TGTCGCTGCTTTAGTACAACTT 58.276 40.909 0.00 0.00 0.00 2.66
2773 2875 3.380479 TGTCGCTGCTTTAGTACAACT 57.620 42.857 0.00 0.00 0.00 3.16
2774 2876 3.493503 ACTTGTCGCTGCTTTAGTACAAC 59.506 43.478 0.00 0.00 33.64 3.32
2775 2877 3.724374 ACTTGTCGCTGCTTTAGTACAA 58.276 40.909 0.00 0.00 34.99 2.41
2776 2878 3.380479 ACTTGTCGCTGCTTTAGTACA 57.620 42.857 0.00 0.00 0.00 2.90
2777 2879 7.306632 CCATATTACTTGTCGCTGCTTTAGTAC 60.307 40.741 0.00 0.00 0.00 2.73
2778 2880 6.700081 CCATATTACTTGTCGCTGCTTTAGTA 59.300 38.462 0.00 0.00 0.00 1.82
2779 2881 5.523916 CCATATTACTTGTCGCTGCTTTAGT 59.476 40.000 0.00 0.00 0.00 2.24
2780 2882 5.753438 TCCATATTACTTGTCGCTGCTTTAG 59.247 40.000 0.00 0.00 0.00 1.85
2781 2883 5.666462 TCCATATTACTTGTCGCTGCTTTA 58.334 37.500 0.00 0.00 0.00 1.85
2782 2884 4.513442 TCCATATTACTTGTCGCTGCTTT 58.487 39.130 0.00 0.00 0.00 3.51
2783 2885 4.137116 TCCATATTACTTGTCGCTGCTT 57.863 40.909 0.00 0.00 0.00 3.91
2784 2886 3.819564 TCCATATTACTTGTCGCTGCT 57.180 42.857 0.00 0.00 0.00 4.24
2785 2887 3.121944 CGATCCATATTACTTGTCGCTGC 59.878 47.826 0.00 0.00 0.00 5.25
2786 2888 3.675225 CCGATCCATATTACTTGTCGCTG 59.325 47.826 0.00 0.00 0.00 5.18
2787 2889 3.572682 TCCGATCCATATTACTTGTCGCT 59.427 43.478 0.00 0.00 0.00 4.93
2788 2890 3.909430 TCCGATCCATATTACTTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
2789 2891 4.486090 CCTCCGATCCATATTACTTGTCG 58.514 47.826 0.00 0.00 0.00 4.35
2790 2892 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
2791 2893 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
2792 2894 4.528596 ACTCCCTCCGATCCATATTACTTG 59.471 45.833 0.00 0.00 0.00 3.16
2793 2895 4.753186 ACTCCCTCCGATCCATATTACTT 58.247 43.478 0.00 0.00 0.00 2.24
2794 2896 4.405756 ACTCCCTCCGATCCATATTACT 57.594 45.455 0.00 0.00 0.00 2.24
2795 2897 5.014858 TGTACTCCCTCCGATCCATATTAC 58.985 45.833 0.00 0.00 0.00 1.89
2796 2898 5.265290 TGTACTCCCTCCGATCCATATTA 57.735 43.478 0.00 0.00 0.00 0.98
2797 2899 4.127918 TGTACTCCCTCCGATCCATATT 57.872 45.455 0.00 0.00 0.00 1.28
2798 2900 3.827817 TGTACTCCCTCCGATCCATAT 57.172 47.619 0.00 0.00 0.00 1.78
2799 2901 3.827817 ATGTACTCCCTCCGATCCATA 57.172 47.619 0.00 0.00 0.00 2.74
2800 2902 2.704190 ATGTACTCCCTCCGATCCAT 57.296 50.000 0.00 0.00 0.00 3.41
2801 2903 2.434336 CAAATGTACTCCCTCCGATCCA 59.566 50.000 0.00 0.00 0.00 3.41
2802 2904 2.807108 GCAAATGTACTCCCTCCGATCC 60.807 54.545 0.00 0.00 0.00 3.36
2803 2905 2.103263 AGCAAATGTACTCCCTCCGATC 59.897 50.000 0.00 0.00 0.00 3.69
2804 2906 2.119495 AGCAAATGTACTCCCTCCGAT 58.881 47.619 0.00 0.00 0.00 4.18
2805 2907 1.568504 AGCAAATGTACTCCCTCCGA 58.431 50.000 0.00 0.00 0.00 4.55
2806 2908 2.009774 CAAGCAAATGTACTCCCTCCG 58.990 52.381 0.00 0.00 0.00 4.63
2807 2909 3.010420 GTCAAGCAAATGTACTCCCTCC 58.990 50.000 0.00 0.00 0.00 4.30
2808 2910 3.010420 GGTCAAGCAAATGTACTCCCTC 58.990 50.000 0.00 0.00 0.00 4.30
2809 2911 2.615493 CGGTCAAGCAAATGTACTCCCT 60.615 50.000 0.00 0.00 0.00 4.20
2810 2912 1.737793 CGGTCAAGCAAATGTACTCCC 59.262 52.381 0.00 0.00 0.00 4.30
2811 2913 2.159627 CACGGTCAAGCAAATGTACTCC 59.840 50.000 0.00 0.00 0.00 3.85
2812 2914 2.806244 ACACGGTCAAGCAAATGTACTC 59.194 45.455 0.00 0.00 0.00 2.59
2813 2915 2.806244 GACACGGTCAAGCAAATGTACT 59.194 45.455 0.00 0.00 32.09 2.73
2814 2916 2.095919 GGACACGGTCAAGCAAATGTAC 60.096 50.000 6.41 0.00 33.68 2.90
2835 2937 7.621428 ATTTCACTGAGGTCACTAAATGATG 57.379 36.000 0.00 0.00 40.28 3.07
2839 2941 8.463930 TCAAAATTTCACTGAGGTCACTAAAT 57.536 30.769 0.00 0.00 0.00 1.40
2848 2950 4.746611 GCCTGTTTCAAAATTTCACTGAGG 59.253 41.667 0.00 0.00 0.00 3.86
2977 3087 4.033587 TCCGCGTTTGCATAGAGAAATAAC 59.966 41.667 4.92 0.00 42.97 1.89
3153 3290 1.476891 GCATAGGGTCGACTCAACAGA 59.523 52.381 19.57 0.00 0.00 3.41
3389 3528 5.365021 AGGGTCAAATCCTTATCTGTCAG 57.635 43.478 0.00 0.00 0.00 3.51
3813 3953 6.464222 TGTGTCCACCTTGATTACTAGAAAG 58.536 40.000 0.00 0.00 0.00 2.62
4190 4331 0.038744 CCACCTCCACAGGCTCAATT 59.961 55.000 0.00 0.00 45.05 2.32
4281 4422 7.486802 AGCTAGTTAACGCTTGAAAACTAAA 57.513 32.000 0.00 0.00 34.85 1.85
4317 4458 8.190784 CCAAAAATATTAACATCACAGGAGGTC 58.809 37.037 0.00 0.00 36.98 3.85
4678 4827 7.230849 ACATTTATCTGCCAACAATCTTTCA 57.769 32.000 0.00 0.00 0.00 2.69
4686 4835 4.780815 CCTCCTACATTTATCTGCCAACA 58.219 43.478 0.00 0.00 0.00 3.33
4691 4840 3.386768 TCGCCTCCTACATTTATCTGC 57.613 47.619 0.00 0.00 0.00 4.26
4755 4904 5.391950 CGAAATCCACACAGAATTAACCCAG 60.392 44.000 0.00 0.00 0.00 4.45
4814 4964 3.636153 AGGCAGAACATCTTTCCTACC 57.364 47.619 0.00 0.00 28.59 3.18
5107 5257 4.753233 TCAACATTCCAAACACAAACTGG 58.247 39.130 0.00 0.00 0.00 4.00
5238 5391 0.817654 CGAGACATACAGGCACCAGA 59.182 55.000 0.00 0.00 0.00 3.86
5312 5465 4.002982 CACTCCAGCAGCAACAAAGTATA 58.997 43.478 0.00 0.00 0.00 1.47
5383 5536 4.351874 TCAGAGGGGACTTACAAACTTG 57.648 45.455 0.00 0.00 44.43 3.16
5484 5637 1.312371 GCCGTGGGAATGCTTGCTTA 61.312 55.000 0.00 0.00 0.00 3.09
5607 5760 0.612174 GGGGTGGAGGAAAAGGAAGC 60.612 60.000 0.00 0.00 0.00 3.86
5645 5798 5.455056 ACATGCCCAACGTATTGTAAAAA 57.545 34.783 0.00 0.00 33.60 1.94
5805 5962 5.269459 AGTTCTCAAACAACGATGAATCG 57.731 39.130 11.01 11.01 45.42 3.34
5868 6025 9.496873 CGGAATGATATAAAACCATTACCACTA 57.503 33.333 0.00 0.00 31.40 2.74
5913 6070 2.672098 TCCTTGAGGATCTCTGCTACC 58.328 52.381 0.00 0.00 39.78 3.18
6072 6229 3.458487 ACCTTCGCCCTTTATTACTCCAT 59.542 43.478 0.00 0.00 0.00 3.41
6266 6423 4.039488 CCCCAGCGGTGTATTGTATTACTA 59.961 45.833 14.40 0.00 0.00 1.82
6304 6461 2.224917 ACGGAGGGAGTAGATGAGATCC 60.225 54.545 0.00 0.00 0.00 3.36
6326 6483 8.872845 GCTTGAAAAACAATCTTATATTGTGGG 58.127 33.333 4.27 0.00 40.94 4.61
6352 6509 8.704234 GTGAGATCGGTTTTCAAGCTATATTAG 58.296 37.037 0.00 0.00 0.00 1.73
6354 6511 7.047891 TGTGAGATCGGTTTTCAAGCTATATT 58.952 34.615 0.00 0.00 0.00 1.28
6355 6512 6.582636 TGTGAGATCGGTTTTCAAGCTATAT 58.417 36.000 0.00 0.00 0.00 0.86
6356 6513 5.972935 TGTGAGATCGGTTTTCAAGCTATA 58.027 37.500 0.00 0.00 0.00 1.31
6360 6517 3.896648 TTGTGAGATCGGTTTTCAAGC 57.103 42.857 0.00 0.00 0.00 4.01
6361 6518 5.869753 AGATTGTGAGATCGGTTTTCAAG 57.130 39.130 0.00 0.00 0.00 3.02
6363 6520 6.697395 TCTTAGATTGTGAGATCGGTTTTCA 58.303 36.000 0.00 0.00 0.00 2.69
6364 6521 7.778470 ATCTTAGATTGTGAGATCGGTTTTC 57.222 36.000 0.00 0.00 0.00 2.29
6365 6522 7.778470 GATCTTAGATTGTGAGATCGGTTTT 57.222 36.000 0.00 0.00 37.24 2.43
6371 6528 8.873830 TGAAAAACGATCTTAGATTGTGAGATC 58.126 33.333 15.15 11.58 41.37 2.75
6373 6530 8.601845 TTGAAAAACGATCTTAGATTGTGAGA 57.398 30.769 15.15 0.00 0.00 3.27
6374 6531 8.712363 TCTTGAAAAACGATCTTAGATTGTGAG 58.288 33.333 15.15 7.58 0.00 3.51
6401 6558 8.094548 CCTTCGTCCCACAATATAAGATCATTA 58.905 37.037 0.00 0.00 0.00 1.90
6402 6559 6.936900 CCTTCGTCCCACAATATAAGATCATT 59.063 38.462 0.00 0.00 0.00 2.57
6403 6560 6.467677 CCTTCGTCCCACAATATAAGATCAT 58.532 40.000 0.00 0.00 0.00 2.45
6405 6562 5.011738 TCCCTTCGTCCCACAATATAAGATC 59.988 44.000 0.00 0.00 0.00 2.75
6406 6563 4.905456 TCCCTTCGTCCCACAATATAAGAT 59.095 41.667 0.00 0.00 0.00 2.40
6407 6564 4.291792 TCCCTTCGTCCCACAATATAAGA 58.708 43.478 0.00 0.00 0.00 2.10
6408 6565 4.101119 ACTCCCTTCGTCCCACAATATAAG 59.899 45.833 0.00 0.00 0.00 1.73
6412 6569 1.946984 ACTCCCTTCGTCCCACAATA 58.053 50.000 0.00 0.00 0.00 1.90
6413 6570 1.946984 TACTCCCTTCGTCCCACAAT 58.053 50.000 0.00 0.00 0.00 2.71
6414 6571 1.553248 CATACTCCCTTCGTCCCACAA 59.447 52.381 0.00 0.00 0.00 3.33
6415 6572 1.191535 CATACTCCCTTCGTCCCACA 58.808 55.000 0.00 0.00 0.00 4.17
6416 6573 1.192428 ACATACTCCCTTCGTCCCAC 58.808 55.000 0.00 0.00 0.00 4.61
6418 6575 1.340568 GCTACATACTCCCTTCGTCCC 59.659 57.143 0.00 0.00 0.00 4.46
6419 6576 2.029623 TGCTACATACTCCCTTCGTCC 58.970 52.381 0.00 0.00 0.00 4.79
6421 6578 2.427453 CACTGCTACATACTCCCTTCGT 59.573 50.000 0.00 0.00 0.00 3.85
6422 6579 2.799917 GCACTGCTACATACTCCCTTCG 60.800 54.545 0.00 0.00 0.00 3.79
6423 6580 2.799917 CGCACTGCTACATACTCCCTTC 60.800 54.545 0.00 0.00 0.00 3.46
6424 6581 1.137086 CGCACTGCTACATACTCCCTT 59.863 52.381 0.00 0.00 0.00 3.95
6459 6712 1.490490 CCCGGATCAGAATCTCCCAAA 59.510 52.381 0.73 0.00 32.12 3.28
6461 6714 1.410850 GCCCGGATCAGAATCTCCCA 61.411 60.000 0.73 0.00 32.12 4.37
6481 6734 2.023695 AGAATCCATTTCCCTGGCATGT 60.024 45.455 0.00 0.00 36.16 3.21
6482 6735 2.674420 AGAATCCATTTCCCTGGCATG 58.326 47.619 0.00 0.00 36.16 4.06
6505 6758 6.045318 CCATCGTCTCAAGAATCTATGTTGT 58.955 40.000 0.00 0.00 0.00 3.32
6619 6872 6.074648 TGACCCATCTGTATTTTTCTTTGGT 58.925 36.000 0.00 0.00 0.00 3.67
6620 6873 6.588719 TGACCCATCTGTATTTTTCTTTGG 57.411 37.500 0.00 0.00 0.00 3.28
6643 6896 1.182385 TTTCGCCGGGCCTTTGAAAT 61.182 50.000 14.55 0.00 0.00 2.17
6646 6899 2.203365 TTTTCGCCGGGCCTTTGA 60.203 55.556 14.55 1.26 0.00 2.69
6672 6925 2.096496 GCGTTGATGATCACAGGGAAAG 59.904 50.000 0.00 0.00 0.00 2.62
6673 6926 2.083774 GCGTTGATGATCACAGGGAAA 58.916 47.619 0.00 0.00 0.00 3.13
6674 6927 1.678728 GGCGTTGATGATCACAGGGAA 60.679 52.381 0.00 0.00 0.00 3.97
6675 6928 0.107703 GGCGTTGATGATCACAGGGA 60.108 55.000 0.00 0.00 0.00 4.20
6676 6929 0.107508 AGGCGTTGATGATCACAGGG 60.108 55.000 0.00 0.00 0.00 4.45
6678 6931 3.058016 ACAAAAGGCGTTGATGATCACAG 60.058 43.478 0.00 0.00 32.59 3.66
6679 6932 2.884012 ACAAAAGGCGTTGATGATCACA 59.116 40.909 0.00 0.00 32.59 3.58
6694 6959 1.338020 AGCTTTCCTCGCCAACAAAAG 59.662 47.619 0.00 0.00 0.00 2.27
6749 7014 1.406219 CGATCTCGTGTTGACGCTGG 61.406 60.000 0.00 0.00 45.68 4.85
6866 7152 3.367607 GCTTGCACAAATAACGTCAACA 58.632 40.909 0.00 0.00 0.00 3.33
6872 7158 2.584791 GTCAGGCTTGCACAAATAACG 58.415 47.619 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.