Multiple sequence alignment - TraesCS1A01G275800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G275800 chr1A 100.000 2868 0 0 1 2868 470687762 470684895 0.000000e+00 5297.0
1 TraesCS1A01G275800 chr1D 95.067 2007 56 19 671 2665 371342261 371340286 0.000000e+00 3118.0
2 TraesCS1A01G275800 chr1D 94.237 590 30 4 1 587 371342995 371342407 0.000000e+00 898.0
3 TraesCS1A01G275800 chr1D 90.659 182 9 4 2687 2868 371340300 371340127 4.780000e-58 235.0
4 TraesCS1A01G275800 chr1B 92.664 2072 74 28 600 2665 495416774 495414775 0.000000e+00 2913.0
5 TraesCS1A01G275800 chr1B 94.712 416 17 3 177 587 495417252 495416837 2.410000e-180 641.0
6 TraesCS1A01G275800 chr1B 93.785 177 9 1 1 175 495417524 495417348 6.090000e-67 265.0
7 TraesCS1A01G275800 chr1B 86.228 167 17 6 1 162 495418495 495418330 2.940000e-40 176.0
8 TraesCS1A01G275800 chr1B 84.656 189 13 9 2686 2866 495414790 495414610 1.060000e-39 174.0
9 TraesCS1A01G275800 chr1B 100.000 33 0 0 177 209 495417301 495417269 8.580000e-06 62.1
10 TraesCS1A01G275800 chr3A 80.980 347 52 11 1102 1443 624829393 624829730 2.190000e-66 263.0
11 TraesCS1A01G275800 chr3A 89.947 189 16 2 1680 1868 624829963 624830148 1.030000e-59 241.0
12 TraesCS1A01G275800 chr3B 80.655 336 53 11 1108 1443 643256776 643257099 1.710000e-62 250.0
13 TraesCS1A01G275800 chr3B 89.418 189 17 2 1680 1868 643257326 643257511 4.780000e-58 235.0
14 TraesCS1A01G275800 chr3D 80.117 342 52 12 1102 1443 481702180 481702505 1.030000e-59 241.0
15 TraesCS1A01G275800 chr3D 89.418 189 17 2 1680 1868 481702741 481702926 4.780000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G275800 chr1A 470684895 470687762 2867 True 5297.000000 5297 100.0000 1 2868 1 chr1A.!!$R1 2867
1 TraesCS1A01G275800 chr1D 371340127 371342995 2868 True 1417.000000 3118 93.3210 1 2868 3 chr1D.!!$R1 2867
2 TraesCS1A01G275800 chr1B 495414610 495418495 3885 True 705.183333 2913 92.0075 1 2866 6 chr1B.!!$R1 2865
3 TraesCS1A01G275800 chr3A 624829393 624830148 755 False 252.000000 263 85.4635 1102 1868 2 chr3A.!!$F1 766
4 TraesCS1A01G275800 chr3B 643256776 643257511 735 False 242.500000 250 85.0365 1108 1868 2 chr3B.!!$F1 760
5 TraesCS1A01G275800 chr3D 481702180 481702926 746 False 238.000000 241 84.7675 1102 1868 2 chr3D.!!$F1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 1821 1.640428 TCGTTCTGATGCATCGGTTC 58.36 50.0 30.03 22.51 34.76 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 3750 0.030101 CAATTCACCACGTGCCGTTT 59.97 50.0 10.91 0.0 38.32 3.6 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
380 1449 6.474102 TCTGTGCGTTGAAAATTTTAAGGTTC 59.526 34.615 2.75 0.00 0.00 3.62
582 1655 8.998814 TCTTCCCTGGTCAATATGAACTATTTA 58.001 33.333 0.00 0.00 34.53 1.40
587 1660 9.151471 CCTGGTCAATATGAACTATTTATACCG 57.849 37.037 0.00 0.00 34.53 4.02
589 1662 9.923143 TGGTCAATATGAACTATTTATACCGAG 57.077 33.333 0.00 0.00 34.53 4.63
590 1663 9.367444 GGTCAATATGAACTATTTATACCGAGG 57.633 37.037 0.00 0.00 29.71 4.63
592 1665 9.316594 TCAATATGAACTATTTATACCGAGGGA 57.683 33.333 0.00 0.00 0.00 4.20
593 1666 9.587772 CAATATGAACTATTTATACCGAGGGAG 57.412 37.037 0.00 0.00 0.00 4.30
594 1667 9.543231 AATATGAACTATTTATACCGAGGGAGA 57.457 33.333 0.00 0.00 0.00 3.71
595 1668 7.850935 ATGAACTATTTATACCGAGGGAGAA 57.149 36.000 0.00 0.00 0.00 2.87
596 1669 7.047460 TGAACTATTTATACCGAGGGAGAAC 57.953 40.000 0.00 0.00 0.00 3.01
597 1670 6.837568 TGAACTATTTATACCGAGGGAGAACT 59.162 38.462 0.00 0.00 0.00 3.01
644 1803 3.737774 ACGTTCAACTTAGTTACGGCTTC 59.262 43.478 19.96 0.00 33.52 3.86
645 1804 3.181546 CGTTCAACTTAGTTACGGCTTCG 60.182 47.826 11.30 1.69 40.22 3.79
662 1821 1.640428 TCGTTCTGATGCATCGGTTC 58.360 50.000 30.03 22.51 34.76 3.62
695 1858 3.873910 ACTAGTTGCACTTTCACACTGT 58.126 40.909 0.00 0.00 0.00 3.55
918 2085 1.892209 AATCTTTATAAGGCGCCCGG 58.108 50.000 26.15 5.66 0.00 5.73
921 2088 3.778097 TTTATAAGGCGCCCGGGGC 62.778 63.158 28.61 28.61 46.75 5.80
1036 2203 4.892965 GCGGCATGGGCATGGGTA 62.893 66.667 0.00 0.00 43.71 3.69
1037 2204 2.115910 CGGCATGGGCATGGGTAT 59.884 61.111 0.00 0.00 43.71 2.73
1038 2205 2.270257 CGGCATGGGCATGGGTATG 61.270 63.158 0.00 0.00 43.71 2.39
1470 2666 1.090052 CCTCCGCCGTCAAAATCTCC 61.090 60.000 0.00 0.00 0.00 3.71
1526 2722 4.853276 TCTTGTCCCTTTCCCCTGTTATTA 59.147 41.667 0.00 0.00 0.00 0.98
1569 2770 3.511934 CCTAGATACTTCCCCGGATCTTG 59.488 52.174 0.73 2.92 31.25 3.02
1643 2896 6.936900 ACCATTTTTGCTATGCGATCTATACT 59.063 34.615 0.00 0.00 0.00 2.12
2051 3319 2.540101 GCGATTCGGAACCAGTAATCTG 59.460 50.000 8.34 0.00 41.01 2.90
2067 3335 7.702772 CCAGTAATCTGTAGTAAACTAGCTGTG 59.297 40.741 0.00 0.00 39.82 3.66
2082 3350 3.270877 AGCTGTGTGGTCGAATAAATCC 58.729 45.455 0.00 0.00 0.00 3.01
2083 3351 3.055094 AGCTGTGTGGTCGAATAAATCCT 60.055 43.478 0.00 0.00 0.00 3.24
2084 3352 3.063997 GCTGTGTGGTCGAATAAATCCTG 59.936 47.826 0.00 0.00 0.00 3.86
2085 3353 4.253685 CTGTGTGGTCGAATAAATCCTGT 58.746 43.478 0.00 0.00 0.00 4.00
2086 3354 4.250464 TGTGTGGTCGAATAAATCCTGTC 58.750 43.478 0.00 0.00 0.00 3.51
2157 3425 3.317711 CAGAGTCAGTCAGTCAGTCAGTT 59.682 47.826 0.00 0.00 0.00 3.16
2248 3516 1.482182 TCACATCCCGTTCTCATCCTG 59.518 52.381 0.00 0.00 0.00 3.86
2250 3518 1.208052 ACATCCCGTTCTCATCCTGTG 59.792 52.381 0.00 0.00 0.00 3.66
2268 3536 3.010420 TGTGTCGACCAAATGTTGTTCA 58.990 40.909 14.12 0.00 0.00 3.18
2390 3658 4.429212 ATGTGTACGCCGCGCAGA 62.429 61.111 13.88 2.42 0.00 4.26
2514 3789 3.688198 GCGAGCTGCAAAAACAATTAC 57.312 42.857 1.02 0.00 45.45 1.89
2515 3790 3.308530 GCGAGCTGCAAAAACAATTACT 58.691 40.909 1.02 0.00 45.45 2.24
2516 3791 3.361940 GCGAGCTGCAAAAACAATTACTC 59.638 43.478 1.02 0.00 45.45 2.59
2517 3792 4.536065 CGAGCTGCAAAAACAATTACTCA 58.464 39.130 1.02 0.00 0.00 3.41
2518 3793 4.379793 CGAGCTGCAAAAACAATTACTCAC 59.620 41.667 1.02 0.00 0.00 3.51
2519 3794 4.620982 AGCTGCAAAAACAATTACTCACC 58.379 39.130 1.02 0.00 0.00 4.02
2520 3795 4.342092 AGCTGCAAAAACAATTACTCACCT 59.658 37.500 1.02 0.00 0.00 4.00
2522 3797 5.507985 GCTGCAAAAACAATTACTCACCTCT 60.508 40.000 0.00 0.00 0.00 3.69
2524 3799 7.575414 TGCAAAAACAATTACTCACCTCTTA 57.425 32.000 0.00 0.00 0.00 2.10
2525 3800 7.648142 TGCAAAAACAATTACTCACCTCTTAG 58.352 34.615 0.00 0.00 0.00 2.18
2526 3801 7.084486 GCAAAAACAATTACTCACCTCTTAGG 58.916 38.462 0.00 0.00 42.49 2.69
2537 3812 0.745468 CCTCTTAGGTAGTCGGGTGC 59.255 60.000 0.00 0.00 0.00 5.01
2538 3813 1.471119 CTCTTAGGTAGTCGGGTGCA 58.529 55.000 0.00 0.00 0.00 4.57
2539 3814 1.134560 CTCTTAGGTAGTCGGGTGCAC 59.865 57.143 8.80 8.80 0.00 4.57
2540 3815 1.183549 CTTAGGTAGTCGGGTGCACT 58.816 55.000 17.98 0.00 0.00 4.40
2549 3824 0.963856 TCGGGTGCACTATCGTCAGT 60.964 55.000 17.98 0.00 0.00 3.41
2662 3937 2.458892 TCCGTGATGGAAACCAGGT 58.541 52.632 0.00 0.00 46.38 4.00
2663 3938 1.646912 TCCGTGATGGAAACCAGGTA 58.353 50.000 0.00 0.00 46.38 3.08
2664 3939 2.193127 TCCGTGATGGAAACCAGGTAT 58.807 47.619 0.00 0.00 46.38 2.73
2665 3940 2.574369 TCCGTGATGGAAACCAGGTATT 59.426 45.455 0.00 0.00 46.38 1.89
2666 3941 3.009695 TCCGTGATGGAAACCAGGTATTT 59.990 43.478 0.00 0.00 46.38 1.40
2667 3942 3.761752 CCGTGATGGAAACCAGGTATTTT 59.238 43.478 0.00 0.00 42.00 1.82
2668 3943 4.219725 CCGTGATGGAAACCAGGTATTTTT 59.780 41.667 0.00 0.00 42.00 1.94
2695 3970 7.736447 ATTTATTTTTGCGAAATGGAAACCA 57.264 28.000 0.00 0.00 37.65 3.67
2696 3971 6.777526 TTATTTTTGCGAAATGGAAACCAG 57.222 33.333 0.00 0.00 37.65 4.00
2697 3972 2.810439 TTTGCGAAATGGAAACCAGG 57.190 45.000 0.00 0.00 36.75 4.45
2698 3973 1.698506 TTGCGAAATGGAAACCAGGT 58.301 45.000 0.00 0.00 36.75 4.00
2699 3974 2.570415 TGCGAAATGGAAACCAGGTA 57.430 45.000 0.00 0.00 36.75 3.08
2706 3981 3.525800 ATGGAAACCAGGTATATGGCC 57.474 47.619 0.00 0.00 44.80 5.36
2718 3993 6.061441 CAGGTATATGGCCATCAACAACTAA 58.939 40.000 24.80 0.46 0.00 2.24
2774 4051 4.642885 CCAAGTTTGTTTTCTGGGTGTAGA 59.357 41.667 0.00 0.00 0.00 2.59
2811 4094 4.995124 ACTATGTGTCTTATCCGTGTCAC 58.005 43.478 0.00 0.00 0.00 3.67
2815 4098 4.077108 TGTGTCTTATCCGTGTCACTAGT 58.923 43.478 0.65 0.00 0.00 2.57
2816 4099 5.247862 TGTGTCTTATCCGTGTCACTAGTA 58.752 41.667 0.00 0.00 0.00 1.82
2817 4100 5.122869 TGTGTCTTATCCGTGTCACTAGTAC 59.877 44.000 0.00 0.00 0.00 2.73
2818 4101 5.353678 GTGTCTTATCCGTGTCACTAGTACT 59.646 44.000 0.00 0.00 0.00 2.73
2819 4102 5.583854 TGTCTTATCCGTGTCACTAGTACTC 59.416 44.000 0.00 0.00 0.00 2.59
2820 4103 5.007528 GTCTTATCCGTGTCACTAGTACTCC 59.992 48.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 1316 9.809096 GATGATGTTTCTTATGACTTGTCTCTA 57.191 33.333 2.35 0.00 0.00 2.43
308 1376 8.999895 AGGGCCTCTCTACTTTTGTAAAATATA 58.000 33.333 0.00 0.00 34.06 0.86
356 1424 6.475402 AGAACCTTAAAATTTTCAACGCACAG 59.525 34.615 6.72 0.00 0.00 3.66
358 1426 6.822073 AGAACCTTAAAATTTTCAACGCAC 57.178 33.333 6.72 0.00 0.00 5.34
380 1449 7.840342 ATACTACTTGTCAAGATTGAGCAAG 57.160 36.000 19.53 22.35 43.63 4.01
501 1571 5.163447 GGTGTCACAGCTCATATGGTTAGTA 60.163 44.000 5.12 0.00 0.00 1.82
503 1573 4.122776 GGTGTCACAGCTCATATGGTTAG 58.877 47.826 5.12 0.00 0.00 2.34
582 1655 3.673543 AAGAGAGTTCTCCCTCGGTAT 57.326 47.619 5.55 0.00 43.88 2.73
587 1660 4.882842 AGTTCAAAGAGAGTTCTCCCTC 57.117 45.455 5.55 0.00 43.88 4.30
589 1662 5.872070 CACATAGTTCAAAGAGAGTTCTCCC 59.128 44.000 5.55 0.00 43.88 4.30
590 1663 6.692486 TCACATAGTTCAAAGAGAGTTCTCC 58.308 40.000 5.55 0.00 43.88 3.71
592 1665 7.901029 TGATCACATAGTTCAAAGAGAGTTCT 58.099 34.615 0.00 0.00 34.29 3.01
593 1666 8.539770 TTGATCACATAGTTCAAAGAGAGTTC 57.460 34.615 0.00 0.00 34.02 3.01
644 1803 1.358877 TGAACCGATGCATCAGAACG 58.641 50.000 25.70 12.25 0.00 3.95
645 1804 4.811024 TCTTATGAACCGATGCATCAGAAC 59.189 41.667 25.70 14.09 0.00 3.01
746 1910 1.393539 CCGCATATTGCTATACACGCC 59.606 52.381 6.26 0.00 42.25 5.68
888 2055 5.611374 CCTTATAAAGATTTGGAGCGAGGA 58.389 41.667 0.00 0.00 0.00 3.71
921 2088 1.372748 GATGATCTCGCCGAGGCAG 60.373 63.158 15.08 10.46 42.06 4.85
1033 2200 0.039618 CCCATGCCCATACCCATACC 59.960 60.000 0.00 0.00 0.00 2.73
1034 2201 0.611896 GCCCATGCCCATACCCATAC 60.612 60.000 0.00 0.00 0.00 2.39
1035 2202 1.070720 TGCCCATGCCCATACCCATA 61.071 55.000 0.00 0.00 36.33 2.74
1036 2203 1.742737 ATGCCCATGCCCATACCCAT 61.743 55.000 0.00 0.00 36.33 4.00
1037 2204 2.402173 ATGCCCATGCCCATACCCA 61.402 57.895 0.00 0.00 36.33 4.51
1038 2205 1.909781 CATGCCCATGCCCATACCC 60.910 63.158 0.00 0.00 36.33 3.69
1470 2666 0.610232 CCAGGGAAGGAAGGCAGTTG 60.610 60.000 0.00 0.00 0.00 3.16
1526 2722 3.948086 CTCGAAGAACGCGCCGACT 62.948 63.158 5.73 0.00 42.26 4.18
1569 2770 3.719214 GGAATCATCCGACGTGGC 58.281 61.111 0.00 0.00 35.59 5.01
1643 2896 0.889186 GGAGAAAAAGGTCAGCGCCA 60.889 55.000 2.29 0.00 0.00 5.69
1720 2988 1.218047 CCGCGAGATGTTCCTCCAA 59.782 57.895 8.23 0.00 0.00 3.53
1959 3227 3.522731 CCGAGGGAGAGCAGACGG 61.523 72.222 0.00 0.00 34.77 4.79
1960 3228 4.200283 GCCGAGGGAGAGCAGACG 62.200 72.222 0.00 0.00 0.00 4.18
1961 3229 3.844090 GGCCGAGGGAGAGCAGAC 61.844 72.222 0.00 0.00 0.00 3.51
2021 3289 0.391130 TTCCGAATCGCAGGTTCCAG 60.391 55.000 0.00 0.00 0.00 3.86
2051 3319 4.083110 TCGACCACACAGCTAGTTTACTAC 60.083 45.833 0.00 0.00 0.00 2.73
2067 3335 4.504858 ACAGACAGGATTTATTCGACCAC 58.495 43.478 0.00 0.00 0.00 4.16
2082 3350 1.543802 GACAGAGGTGAGGACAGACAG 59.456 57.143 0.00 0.00 0.00 3.51
2083 3351 1.621992 GACAGAGGTGAGGACAGACA 58.378 55.000 0.00 0.00 0.00 3.41
2084 3352 0.523966 CGACAGAGGTGAGGACAGAC 59.476 60.000 0.00 0.00 0.00 3.51
2085 3353 0.110678 ACGACAGAGGTGAGGACAGA 59.889 55.000 0.00 0.00 0.00 3.41
2086 3354 0.242286 CACGACAGAGGTGAGGACAG 59.758 60.000 0.00 0.00 37.60 3.51
2157 3425 3.456644 TGGATTGCTATAACCCTTTCCGA 59.543 43.478 0.00 0.00 0.00 4.55
2193 3461 4.036616 GGTGTAAAACAGGAAAGCGGTAAA 59.963 41.667 0.00 0.00 0.00 2.01
2194 3462 3.565063 GGTGTAAAACAGGAAAGCGGTAA 59.435 43.478 0.00 0.00 0.00 2.85
2195 3463 3.140623 GGTGTAAAACAGGAAAGCGGTA 58.859 45.455 0.00 0.00 0.00 4.02
2390 3658 0.311790 CGCTTTCAACACATGCTGGT 59.688 50.000 0.00 0.00 0.00 4.00
2454 3726 6.807230 CGTTTAAGCCTGTATAGTATAGCCAG 59.193 42.308 0.00 0.00 0.00 4.85
2475 3750 0.030101 CAATTCACCACGTGCCGTTT 59.970 50.000 10.91 0.00 38.32 3.60
2494 3769 3.308530 AGTAATTGTTTTTGCAGCTCGC 58.691 40.909 0.00 1.70 42.89 5.03
2518 3793 0.745468 GCACCCGACTACCTAAGAGG 59.255 60.000 0.00 0.00 42.49 3.69
2519 3794 1.134560 GTGCACCCGACTACCTAAGAG 59.865 57.143 5.22 0.00 0.00 2.85
2520 3795 1.180029 GTGCACCCGACTACCTAAGA 58.820 55.000 5.22 0.00 0.00 2.10
2522 3797 2.512692 TAGTGCACCCGACTACCTAA 57.487 50.000 14.63 0.00 0.00 2.69
2524 3799 1.400737 GATAGTGCACCCGACTACCT 58.599 55.000 14.63 0.00 0.00 3.08
2525 3800 0.030369 CGATAGTGCACCCGACTACC 59.970 60.000 14.63 0.00 0.00 3.18
2526 3801 3.546407 CGATAGTGCACCCGACTAC 57.454 57.895 14.63 0.00 0.00 2.73
2539 3814 2.478031 CGAACCTGGACACTGACGATAG 60.478 54.545 0.00 0.00 46.19 2.08
2540 3815 1.471287 CGAACCTGGACACTGACGATA 59.529 52.381 0.00 0.00 0.00 2.92
2549 3824 4.023980 ACTAGATGATTCGAACCTGGACA 58.976 43.478 0.00 0.00 0.00 4.02
2669 3944 9.273016 TGGTTTCCATTTCGCAAAAATAAATAA 57.727 25.926 0.00 0.00 0.00 1.40
2670 3945 8.833231 TGGTTTCCATTTCGCAAAAATAAATA 57.167 26.923 0.00 0.00 0.00 1.40
2671 3946 7.094848 CCTGGTTTCCATTTCGCAAAAATAAAT 60.095 33.333 0.00 0.00 30.82 1.40
2672 3947 6.203723 CCTGGTTTCCATTTCGCAAAAATAAA 59.796 34.615 0.00 0.00 30.82 1.40
2673 3948 5.698545 CCTGGTTTCCATTTCGCAAAAATAA 59.301 36.000 0.00 0.00 30.82 1.40
2674 3949 5.221541 ACCTGGTTTCCATTTCGCAAAAATA 60.222 36.000 0.00 0.00 30.82 1.40
2675 3950 4.064388 CCTGGTTTCCATTTCGCAAAAAT 58.936 39.130 0.00 0.00 30.82 1.82
2676 3951 3.118592 ACCTGGTTTCCATTTCGCAAAAA 60.119 39.130 0.00 0.00 30.82 1.94
2677 3952 2.432510 ACCTGGTTTCCATTTCGCAAAA 59.567 40.909 0.00 0.00 30.82 2.44
2678 3953 2.035632 ACCTGGTTTCCATTTCGCAAA 58.964 42.857 0.00 0.00 30.82 3.68
2679 3954 1.698506 ACCTGGTTTCCATTTCGCAA 58.301 45.000 0.00 0.00 30.82 4.85
2680 3955 2.570415 TACCTGGTTTCCATTTCGCA 57.430 45.000 3.84 0.00 30.82 5.10
2681 3956 4.023193 CCATATACCTGGTTTCCATTTCGC 60.023 45.833 3.84 0.00 30.82 4.70
2682 3957 4.023193 GCCATATACCTGGTTTCCATTTCG 60.023 45.833 3.84 0.00 38.63 3.46
2683 3958 4.280929 GGCCATATACCTGGTTTCCATTTC 59.719 45.833 3.84 0.00 38.63 2.17
2684 3959 4.223144 GGCCATATACCTGGTTTCCATTT 58.777 43.478 3.84 0.00 38.63 2.32
2685 3960 3.206412 TGGCCATATACCTGGTTTCCATT 59.794 43.478 0.00 0.00 38.63 3.16
2686 3961 2.788807 TGGCCATATACCTGGTTTCCAT 59.211 45.455 0.00 0.00 38.63 3.41
2687 3962 2.209758 TGGCCATATACCTGGTTTCCA 58.790 47.619 0.00 0.00 38.63 3.53
2688 3963 3.181434 TGATGGCCATATACCTGGTTTCC 60.181 47.826 20.84 1.31 38.63 3.13
2689 3964 4.098914 TGATGGCCATATACCTGGTTTC 57.901 45.455 20.84 2.49 38.63 2.78
2690 3965 4.215109 GTTGATGGCCATATACCTGGTTT 58.785 43.478 20.84 0.00 38.63 3.27
2691 3966 3.204158 TGTTGATGGCCATATACCTGGTT 59.796 43.478 20.84 0.00 38.63 3.67
2692 3967 2.782925 TGTTGATGGCCATATACCTGGT 59.217 45.455 20.84 4.05 38.63 4.00
2693 3968 3.507162 TGTTGATGGCCATATACCTGG 57.493 47.619 20.84 0.00 39.45 4.45
2694 3969 4.464008 AGTTGTTGATGGCCATATACCTG 58.536 43.478 20.84 0.00 0.00 4.00
2695 3970 4.796110 AGTTGTTGATGGCCATATACCT 57.204 40.909 20.84 9.97 0.00 3.08
2696 3971 6.296026 TCTTAGTTGTTGATGGCCATATACC 58.704 40.000 20.84 6.72 0.00 2.73
2697 3972 6.992715 ACTCTTAGTTGTTGATGGCCATATAC 59.007 38.462 20.84 19.33 0.00 1.47
2698 3973 7.071196 AGACTCTTAGTTGTTGATGGCCATATA 59.929 37.037 20.84 8.29 0.00 0.86
2699 3974 6.006275 ACTCTTAGTTGTTGATGGCCATAT 57.994 37.500 20.84 0.00 0.00 1.78
2706 3981 5.704888 AGACGAGACTCTTAGTTGTTGATG 58.295 41.667 0.03 0.00 0.00 3.07
2718 3993 4.010667 ACAGTGAAGTAGACGAGACTCT 57.989 45.455 0.00 0.00 0.00 3.24
2792 4075 4.705507 ACTAGTGACACGGATAAGACACAT 59.294 41.667 0.00 0.00 0.00 3.21
2819 4102 3.681897 GCAATCATCGCTTCCTGTATAGG 59.318 47.826 0.00 0.00 46.06 2.57
2820 4103 3.681897 GGCAATCATCGCTTCCTGTATAG 59.318 47.826 0.00 0.00 0.00 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.