Multiple sequence alignment - TraesCS1A01G274900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G274900 chr1A 100.000 3543 0 0 1 3543 469171122 469174664 0.000000e+00 6543.0
1 TraesCS1A01G274900 chr1A 96.226 53 2 0 1441 1493 469172511 469172563 1.750000e-13 87.9
2 TraesCS1A01G274900 chr1A 96.226 53 2 0 1390 1442 469172562 469172614 1.750000e-13 87.9
3 TraesCS1A01G274900 chr1D 90.211 1798 108 16 351 2113 370300615 370302379 0.000000e+00 2283.0
4 TraesCS1A01G274900 chr1D 93.795 419 26 0 1 419 370300181 370300599 6.450000e-177 630.0
5 TraesCS1A01G274900 chr1D 85.681 433 41 8 3113 3543 370303580 370303993 1.510000e-118 436.0
6 TraesCS1A01G274900 chr1D 77.600 625 89 26 2396 3002 370302795 370303386 7.330000e-87 331.0
7 TraesCS1A01G274900 chr1D 88.525 122 13 1 1118 1238 370301286 370301407 2.850000e-31 147.0
8 TraesCS1A01G274900 chr1D 96.226 53 2 0 1390 1442 370301723 370301775 1.750000e-13 87.9
9 TraesCS1A01G274900 chr1B 92.735 1115 54 6 352 1442 493649385 493650496 0.000000e+00 1585.0
10 TraesCS1A01G274900 chr1B 86.026 687 37 10 1441 2116 493650444 493651082 0.000000e+00 682.0
11 TraesCS1A01G274900 chr1B 95.400 413 14 3 14 421 493649000 493649412 0.000000e+00 652.0
12 TraesCS1A01G274900 chr1B 86.885 183 23 1 997 1179 493650111 493650292 1.670000e-48 204.0
13 TraesCS1A01G274900 chr7D 94.118 34 2 0 497 530 575092011 575091978 6.000000e-03 52.8
14 TraesCS1A01G274900 chr5D 94.118 34 2 0 497 530 9748808 9748775 6.000000e-03 52.8
15 TraesCS1A01G274900 chr5D 100.000 28 0 0 497 524 469875181 469875208 6.000000e-03 52.8
16 TraesCS1A01G274900 chr4D 100.000 28 0 0 497 524 41083175 41083202 6.000000e-03 52.8
17 TraesCS1A01G274900 chr4D 100.000 28 0 0 497 524 90185951 90185978 6.000000e-03 52.8
18 TraesCS1A01G274900 chr3A 100.000 28 0 0 497 524 668797759 668797786 6.000000e-03 52.8
19 TraesCS1A01G274900 chr2D 100.000 28 0 0 497 524 177719091 177719118 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G274900 chr1A 469171122 469174664 3542 False 2239.600000 6543 97.4840 1 3543 3 chr1A.!!$F1 3542
1 TraesCS1A01G274900 chr1D 370300181 370303993 3812 False 652.483333 2283 88.6730 1 3543 6 chr1D.!!$F1 3542
2 TraesCS1A01G274900 chr1B 493649000 493651082 2082 False 780.750000 1585 90.2615 14 2116 4 chr1B.!!$F1 2102

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 221 0.815213 GCCGCAACAGCTATGGATCA 60.815 55.000 0.00 0.0 0.00 2.92 F
1409 1523 1.301479 GTGTTCCGGCGGAAGAAGT 60.301 57.895 39.28 0.0 42.88 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1545 0.031721 CCGGAATACGCTCCCTGTAC 59.968 60.0 0.0 0.0 42.52 2.9 R
2786 3087 0.033504 CGTACTGCAAGACCACTGGT 59.966 55.0 0.0 0.0 39.44 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.097466 GCTGACCCAACCGATATGTTTG 59.903 50.000 0.00 0.00 0.00 2.93
132 133 3.552273 CGGTAAACCTAGACCCATCGATG 60.552 52.174 18.76 18.76 31.50 3.84
215 221 0.815213 GCCGCAACAGCTATGGATCA 60.815 55.000 0.00 0.00 0.00 2.92
269 275 4.593864 GCCTCCGGACGATGGCTC 62.594 72.222 21.95 0.00 41.92 4.70
292 298 3.309436 TTCACGGTCGATGCCCAGG 62.309 63.158 0.00 0.00 0.00 4.45
441 531 3.499737 CAAGACGACGGCATGGGC 61.500 66.667 2.19 0.00 40.13 5.36
465 555 3.499737 GCCACGCCGGAGATGTTG 61.500 66.667 13.83 0.00 36.56 3.33
631 721 3.614806 AGAGAAGCTGCTCTCCCG 58.385 61.111 19.42 0.00 41.24 5.14
633 723 4.140599 AGAAGCTGCTCTCCCGCG 62.141 66.667 1.00 0.00 0.00 6.46
733 847 2.181021 CCGTCCGTTTCTCTCCGG 59.819 66.667 0.00 0.00 45.55 5.14
914 1028 3.711541 ATCCCGGCAACTACGACGC 62.712 63.158 0.00 0.00 0.00 5.19
996 1110 2.029666 CGGAGAAGCTATGGGCCG 59.970 66.667 0.00 0.00 43.05 6.13
1017 1131 1.811266 AATGCGCGATCGACAAGCT 60.811 52.632 21.57 5.56 38.10 3.74
1076 1190 2.033141 AGTGCGCCATCAGCAAGT 59.967 55.556 4.18 0.00 46.97 3.16
1105 1219 2.383170 TACGAGCCGTACGACGATT 58.617 52.632 25.95 13.53 46.05 3.34
1245 1359 1.965754 AAGATCAGAGGCGACAGGGC 61.966 60.000 0.00 0.00 42.69 5.19
1275 1389 1.666189 GACGAAAGGCAGCAGGATTAC 59.334 52.381 0.00 0.00 40.66 1.89
1409 1523 1.301479 GTGTTCCGGCGGAAGAAGT 60.301 57.895 39.28 0.00 42.88 3.01
1430 1544 2.048023 AGAACGGCGGGTATCGTCA 61.048 57.895 13.24 0.00 44.96 4.35
1431 1545 1.588139 GAACGGCGGGTATCGTCAG 60.588 63.158 13.24 0.00 44.96 3.51
1432 1546 2.275547 GAACGGCGGGTATCGTCAGT 62.276 60.000 13.24 0.00 44.96 3.41
1433 1547 1.031571 AACGGCGGGTATCGTCAGTA 61.032 55.000 13.24 0.00 44.96 2.74
1434 1548 1.009222 CGGCGGGTATCGTCAGTAC 60.009 63.158 0.00 0.00 44.96 2.73
1435 1549 1.717791 CGGCGGGTATCGTCAGTACA 61.718 60.000 0.00 0.00 44.96 2.90
1519 1633 2.485426 CGTGTACACTTTCGTCCTCCTA 59.515 50.000 23.01 0.00 0.00 2.94
1576 1690 0.322975 TGTGCAGCTTCCTTCTCCTC 59.677 55.000 0.00 0.00 0.00 3.71
1578 1692 0.837691 TGCAGCTTCCTTCTCCTCCA 60.838 55.000 0.00 0.00 0.00 3.86
1633 1747 2.204029 ACCGGGGCTTTGGACCTA 60.204 61.111 6.32 0.00 41.42 3.08
1659 1773 1.181786 AGAAGCAGAAGAGGGACGAG 58.818 55.000 0.00 0.00 0.00 4.18
1663 1777 1.803943 CAGAAGAGGGACGAGTCGG 59.196 63.158 18.30 0.00 0.00 4.79
1664 1778 0.677098 CAGAAGAGGGACGAGTCGGA 60.677 60.000 18.30 0.00 0.00 4.55
1665 1779 0.393267 AGAAGAGGGACGAGTCGGAG 60.393 60.000 18.30 0.00 0.00 4.63
1666 1780 1.995646 GAAGAGGGACGAGTCGGAGC 61.996 65.000 18.30 5.64 0.00 4.70
1667 1781 3.878519 GAGGGACGAGTCGGAGCG 61.879 72.222 18.30 0.00 0.00 5.03
1668 1782 4.405671 AGGGACGAGTCGGAGCGA 62.406 66.667 18.30 0.00 0.00 4.93
1677 1791 2.178273 TCGGAGCGACACGACATG 59.822 61.111 0.00 0.00 33.69 3.21
1687 1801 1.266178 ACACGACATGTCATCCTCCA 58.734 50.000 24.93 0.00 36.54 3.86
1699 1813 1.265454 ATCCTCCACCCAAGACGACC 61.265 60.000 0.00 0.00 0.00 4.79
1700 1814 1.913762 CCTCCACCCAAGACGACCT 60.914 63.158 0.00 0.00 0.00 3.85
1704 1818 1.481056 CCACCCAAGACGACCTCCTT 61.481 60.000 0.00 0.00 0.00 3.36
1707 1821 1.215647 CCAAGACGACCTCCTTCCG 59.784 63.158 0.00 0.00 0.00 4.30
1733 1847 0.886490 AAGCAGTGGACCAAGAAGCG 60.886 55.000 0.00 0.00 0.00 4.68
1764 1878 0.532573 ACATGGACTCGACGCTGAAT 59.467 50.000 0.00 0.00 0.00 2.57
1825 1939 3.952628 GAGTACCACCACAGCGGCC 62.953 68.421 0.00 0.00 39.03 6.13
1956 2070 5.548056 GGAGATTATACAGATTGAGGGGGAA 59.452 44.000 0.00 0.00 0.00 3.97
2080 2206 2.186903 CCCCCGACACTTGGATCG 59.813 66.667 0.00 0.00 38.08 3.69
2081 2207 2.656069 CCCCCGACACTTGGATCGT 61.656 63.158 0.00 0.00 36.60 3.73
2082 2208 1.153628 CCCCGACACTTGGATCGTC 60.154 63.158 0.00 0.00 36.60 4.20
2099 2225 3.023832 TCGTCATCACCAGAGCTCATAA 58.976 45.455 17.77 0.00 0.00 1.90
2134 2284 8.726870 TTAAGTATGTTTATTCAGGTGCCTAC 57.273 34.615 0.00 0.00 0.00 3.18
2146 2296 3.350612 GCCTACGCGCACAAACCA 61.351 61.111 5.73 0.00 0.00 3.67
2147 2297 2.686816 GCCTACGCGCACAAACCAT 61.687 57.895 5.73 0.00 0.00 3.55
2165 2324 5.357742 ACCATGTGTGATCTGCTATACAA 57.642 39.130 0.00 0.00 0.00 2.41
2166 2325 5.118990 ACCATGTGTGATCTGCTATACAAC 58.881 41.667 0.00 0.00 0.00 3.32
2169 2328 6.317140 CCATGTGTGATCTGCTATACAACTTT 59.683 38.462 0.00 0.00 0.00 2.66
2171 2330 8.882736 CATGTGTGATCTGCTATACAACTTTAA 58.117 33.333 0.00 0.00 0.00 1.52
2175 2334 6.538742 GTGATCTGCTATACAACTTTAAGCCA 59.461 38.462 0.00 0.00 32.14 4.75
2185 2344 6.969993 ACAACTTTAAGCCAGGTGAAATTA 57.030 33.333 0.00 0.00 32.81 1.40
2205 2365 9.931210 GAAATTACCTATATGTTTTTCCACTCG 57.069 33.333 0.00 0.00 0.00 4.18
2211 2371 5.643379 ATATGTTTTTCCACTCGTGCATT 57.357 34.783 0.00 0.00 0.00 3.56
2218 2378 2.639065 TCCACTCGTGCATTATTTCCC 58.361 47.619 0.00 0.00 0.00 3.97
2220 2380 3.016736 CCACTCGTGCATTATTTCCCTT 58.983 45.455 0.00 0.00 0.00 3.95
2221 2381 4.080807 TCCACTCGTGCATTATTTCCCTTA 60.081 41.667 0.00 0.00 0.00 2.69
2229 2389 6.262273 CGTGCATTATTTCCCTTAGTGGTTAT 59.738 38.462 0.00 0.00 0.00 1.89
2238 2398 7.752518 TTCCCTTAGTGGTTATATACACCAA 57.247 36.000 14.52 2.69 46.15 3.67
2242 2402 7.822822 CCCTTAGTGGTTATATACACCAATAGC 59.177 40.741 16.51 8.21 46.15 2.97
2243 2403 8.372459 CCTTAGTGGTTATATACACCAATAGCA 58.628 37.037 16.51 8.56 46.15 3.49
2245 2405 7.374975 AGTGGTTATATACACCAATAGCACT 57.625 36.000 14.52 11.00 46.15 4.40
2246 2406 8.486942 AGTGGTTATATACACCAATAGCACTA 57.513 34.615 14.52 0.00 46.15 2.74
2247 2407 8.365647 AGTGGTTATATACACCAATAGCACTAC 58.634 37.037 14.52 1.93 46.15 2.73
2249 2409 8.706521 TGGTTATATACACCAATAGCACTACAA 58.293 33.333 11.90 0.00 41.58 2.41
2250 2410 9.204570 GGTTATATACACCAATAGCACTACAAG 57.795 37.037 8.41 0.00 34.04 3.16
2251 2411 9.760077 GTTATATACACCAATAGCACTACAAGT 57.240 33.333 0.00 0.00 0.00 3.16
2252 2412 9.976511 TTATATACACCAATAGCACTACAAGTC 57.023 33.333 0.00 0.00 0.00 3.01
2254 2414 4.822026 ACACCAATAGCACTACAAGTCTC 58.178 43.478 0.00 0.00 0.00 3.36
2256 2416 3.119101 ACCAATAGCACTACAAGTCTCCG 60.119 47.826 0.00 0.00 0.00 4.63
2257 2417 3.448686 CAATAGCACTACAAGTCTCCGG 58.551 50.000 0.00 0.00 0.00 5.14
2261 2471 1.078710 ACTACAAGTCTCCGGGCCT 59.921 57.895 0.84 0.00 0.00 5.19
2273 2483 3.771160 GGGCCTCGACGGACATGT 61.771 66.667 0.84 0.00 45.67 3.21
2338 2618 0.661552 CTCCTTGCAGAATGGCGATG 59.338 55.000 0.00 0.00 35.86 3.84
2339 2619 0.035152 TCCTTGCAGAATGGCGATGT 60.035 50.000 0.00 0.00 35.86 3.06
2344 2624 0.804364 GCAGAATGGCGATGTCAACA 59.196 50.000 0.00 0.00 35.86 3.33
2345 2625 1.402968 GCAGAATGGCGATGTCAACAT 59.597 47.619 0.00 0.00 36.30 2.71
2346 2626 2.159338 GCAGAATGGCGATGTCAACATT 60.159 45.455 0.00 0.00 34.41 2.71
2347 2627 3.688272 CAGAATGGCGATGTCAACATTC 58.312 45.455 14.06 14.06 45.80 2.67
2349 2629 3.945179 GAATGGCGATGTCAACATTCTC 58.055 45.455 14.39 0.00 43.46 2.87
2350 2630 2.768253 TGGCGATGTCAACATTCTCT 57.232 45.000 0.00 0.00 36.57 3.10
2351 2631 2.349590 TGGCGATGTCAACATTCTCTG 58.650 47.619 0.00 0.00 36.57 3.35
2352 2632 1.063174 GGCGATGTCAACATTCTCTGC 59.937 52.381 0.00 0.00 36.57 4.26
2353 2633 2.005451 GCGATGTCAACATTCTCTGCT 58.995 47.619 0.00 0.00 36.57 4.24
2354 2634 3.190079 GCGATGTCAACATTCTCTGCTA 58.810 45.455 0.00 0.00 36.57 3.49
2355 2635 3.000724 GCGATGTCAACATTCTCTGCTAC 59.999 47.826 0.00 0.00 36.57 3.58
2356 2636 3.241553 CGATGTCAACATTCTCTGCTACG 59.758 47.826 0.00 0.00 36.57 3.51
2357 2637 3.934457 TGTCAACATTCTCTGCTACGA 57.066 42.857 0.00 0.00 0.00 3.43
2358 2638 3.838120 TGTCAACATTCTCTGCTACGAG 58.162 45.455 0.00 0.00 0.00 4.18
2359 2639 2.600867 GTCAACATTCTCTGCTACGAGC 59.399 50.000 0.00 0.00 42.82 5.03
2360 2640 1.929836 CAACATTCTCTGCTACGAGCC 59.070 52.381 0.00 0.00 41.51 4.70
2361 2641 1.479709 ACATTCTCTGCTACGAGCCT 58.520 50.000 0.00 0.00 41.51 4.58
2362 2642 1.827969 ACATTCTCTGCTACGAGCCTT 59.172 47.619 0.00 0.00 41.51 4.35
2363 2643 2.200067 CATTCTCTGCTACGAGCCTTG 58.800 52.381 0.00 0.00 41.51 3.61
2364 2644 0.108615 TTCTCTGCTACGAGCCTTGC 60.109 55.000 0.00 0.00 41.51 4.01
2365 2645 0.967887 TCTCTGCTACGAGCCTTGCT 60.968 55.000 0.00 0.00 41.51 3.91
2366 2646 0.741326 CTCTGCTACGAGCCTTGCTA 59.259 55.000 0.00 0.00 41.51 3.49
2367 2647 0.741326 TCTGCTACGAGCCTTGCTAG 59.259 55.000 0.00 0.00 41.51 3.42
2368 2648 0.873743 CTGCTACGAGCCTTGCTAGC 60.874 60.000 8.10 8.10 41.51 3.42
2369 2649 1.592939 GCTACGAGCCTTGCTAGCC 60.593 63.158 13.29 0.00 39.88 3.93
2370 2650 1.299468 CTACGAGCCTTGCTAGCCG 60.299 63.158 13.29 9.77 39.88 5.52
2371 2651 2.685387 CTACGAGCCTTGCTAGCCGG 62.685 65.000 13.29 13.80 39.88 6.13
2402 2687 1.209275 GATCAATGGCCTCGTCGACG 61.209 60.000 31.30 31.30 41.45 5.12
2404 2689 4.814294 AATGGCCTCGTCGACGCC 62.814 66.667 32.19 26.44 43.32 5.68
2439 2724 1.027357 ATCACCGGATGCAGCATTTC 58.973 50.000 9.46 4.53 30.86 2.17
2449 2734 1.806542 TGCAGCATTTCCGAGAACTTC 59.193 47.619 0.00 0.00 0.00 3.01
2461 2746 2.356382 CGAGAACTTCGTCTATGCCTCT 59.644 50.000 0.00 0.00 44.27 3.69
2462 2747 3.560481 CGAGAACTTCGTCTATGCCTCTA 59.440 47.826 0.00 0.00 44.27 2.43
2467 2752 5.446143 ACTTCGTCTATGCCTCTAAGATG 57.554 43.478 0.00 0.00 0.00 2.90
2499 2784 0.238289 CACAAGCGTGTCATCCCAAC 59.762 55.000 1.00 0.00 38.41 3.77
2502 2787 0.687354 AAGCGTGTCATCCCAACTCT 59.313 50.000 0.00 0.00 0.00 3.24
2505 2790 0.321671 CGTGTCATCCCAACTCTGGT 59.678 55.000 0.00 0.00 41.72 4.00
2506 2791 1.813513 GTGTCATCCCAACTCTGGTG 58.186 55.000 0.00 0.00 41.72 4.17
2507 2792 1.347707 GTGTCATCCCAACTCTGGTGA 59.652 52.381 0.00 0.00 41.72 4.02
2509 2794 2.026915 TGTCATCCCAACTCTGGTGATG 60.027 50.000 12.67 12.67 44.13 3.07
2511 2796 2.912295 TCATCCCAACTCTGGTGATGAA 59.088 45.455 16.45 6.70 46.01 2.57
2512 2797 3.054875 TCATCCCAACTCTGGTGATGAAG 60.055 47.826 16.45 0.00 46.01 3.02
2513 2798 2.338809 TCCCAACTCTGGTGATGAAGT 58.661 47.619 0.00 0.00 41.72 3.01
2514 2799 2.711009 TCCCAACTCTGGTGATGAAGTT 59.289 45.455 0.00 0.00 41.72 2.66
2516 2801 2.227388 CCAACTCTGGTGATGAAGTTGC 59.773 50.000 8.25 0.00 38.00 4.17
2517 2802 2.880268 CAACTCTGGTGATGAAGTTGCA 59.120 45.455 1.62 0.00 31.92 4.08
2519 2804 2.105477 ACTCTGGTGATGAAGTTGCACT 59.895 45.455 0.00 0.00 33.25 4.40
2520 2805 3.144506 CTCTGGTGATGAAGTTGCACTT 58.855 45.455 0.00 0.00 41.95 3.16
2527 2812 3.461843 GAAGTTGCACTTCGCCAAG 57.538 52.632 11.53 0.00 44.22 3.61
2528 2813 0.661483 GAAGTTGCACTTCGCCAAGC 60.661 55.000 11.53 0.00 44.22 4.01
2529 2814 2.050077 GTTGCACTTCGCCAAGCC 60.050 61.111 0.00 0.00 41.33 4.35
2530 2815 2.203337 TTGCACTTCGCCAAGCCT 60.203 55.556 0.00 0.00 41.33 4.58
2543 2828 2.164219 GCCAAGCCTTCGATTCAATGAA 59.836 45.455 0.00 0.00 0.00 2.57
2544 2829 3.733077 GCCAAGCCTTCGATTCAATGAAG 60.733 47.826 1.10 3.74 40.97 3.02
2558 2843 2.885135 ATGAAGGACATTGGTGCAGA 57.115 45.000 0.00 0.00 37.91 4.26
2562 2847 1.843368 AGGACATTGGTGCAGATTGG 58.157 50.000 0.00 0.00 37.91 3.16
2567 2852 1.901159 CATTGGTGCAGATTGGGGAAA 59.099 47.619 0.00 0.00 0.00 3.13
2570 2855 2.618794 TGGTGCAGATTGGGGAAAATT 58.381 42.857 0.00 0.00 0.00 1.82
2572 2857 4.360889 TGGTGCAGATTGGGGAAAATTAT 58.639 39.130 0.00 0.00 0.00 1.28
2577 2862 4.895297 GCAGATTGGGGAAAATTATGGAGA 59.105 41.667 0.00 0.00 0.00 3.71
2588 2873 4.866508 AATTATGGAGATGCATGGCTTG 57.133 40.909 2.46 0.00 0.00 4.01
2589 2874 3.301794 TTATGGAGATGCATGGCTTGT 57.698 42.857 2.46 0.00 0.00 3.16
2591 2876 0.394762 TGGAGATGCATGGCTTGTCC 60.395 55.000 2.46 11.76 43.24 4.02
2592 2877 0.106819 GGAGATGCATGGCTTGTCCT 60.107 55.000 2.46 0.00 40.98 3.85
2593 2878 1.141657 GGAGATGCATGGCTTGTCCTA 59.858 52.381 2.46 0.00 40.98 2.94
2594 2879 2.216898 GAGATGCATGGCTTGTCCTAC 58.783 52.381 2.46 0.00 35.26 3.18
2595 2880 1.133976 AGATGCATGGCTTGTCCTACC 60.134 52.381 2.46 0.00 35.26 3.18
2596 2881 0.464373 ATGCATGGCTTGTCCTACCG 60.464 55.000 0.00 0.00 35.26 4.02
2603 2888 1.375523 CTTGTCCTACCGGTGGTGC 60.376 63.158 19.93 9.73 36.19 5.01
2605 2890 4.446413 GTCCTACCGGTGGTGCGG 62.446 72.222 19.93 9.74 36.19 5.69
2621 2906 0.250640 GCGGCTGGATGGATCTCATT 60.251 55.000 0.00 0.00 35.97 2.57
2622 2907 1.520494 CGGCTGGATGGATCTCATTG 58.480 55.000 0.00 0.00 35.97 2.82
2624 2909 2.228059 GGCTGGATGGATCTCATTGTG 58.772 52.381 0.00 0.00 35.97 3.33
2625 2910 2.228059 GCTGGATGGATCTCATTGTGG 58.772 52.381 0.00 0.00 35.97 4.17
2626 2911 2.422519 GCTGGATGGATCTCATTGTGGT 60.423 50.000 0.00 0.00 35.97 4.16
2628 2913 2.173356 TGGATGGATCTCATTGTGGTCC 59.827 50.000 10.48 10.48 35.97 4.46
2629 2914 2.173356 GGATGGATCTCATTGTGGTCCA 59.827 50.000 19.97 19.97 42.62 4.02
2630 2915 2.787473 TGGATCTCATTGTGGTCCAC 57.213 50.000 15.64 15.64 34.23 4.02
2631 2916 1.984424 TGGATCTCATTGTGGTCCACA 59.016 47.619 21.21 21.21 43.02 4.17
2643 2939 1.071071 TGGTCCACACCTTCTTAACGG 59.929 52.381 0.00 0.00 44.17 4.44
2660 2956 0.974383 CGGTGTTCTAGGGAAGTGGT 59.026 55.000 0.00 0.00 31.46 4.16
2669 2965 1.658114 GGGAAGTGGTTTGCCGTTC 59.342 57.895 0.00 0.00 37.54 3.95
2677 2973 2.358247 TTTGCCGTTCGGAGAGGC 60.358 61.111 15.69 15.92 46.55 4.70
2681 2977 2.663196 CCGTTCGGAGAGGCCTTT 59.337 61.111 6.77 0.00 38.43 3.11
2682 2978 1.741770 CCGTTCGGAGAGGCCTTTG 60.742 63.158 6.77 0.00 38.43 2.77
2683 2979 1.741770 CGTTCGGAGAGGCCTTTGG 60.742 63.158 6.77 0.00 38.43 3.28
2714 3012 3.379452 CCTCTCCATGTACCTCTTCCTT 58.621 50.000 0.00 0.00 0.00 3.36
2718 3016 4.026744 CTCCATGTACCTCTTCCTTCTCA 58.973 47.826 0.00 0.00 0.00 3.27
2726 3024 2.093235 CCTCTTCCTTCTCATGGTGGAC 60.093 54.545 0.00 0.00 0.00 4.02
2729 3027 2.225382 TCCTTCTCATGGTGGACGTA 57.775 50.000 0.00 0.00 0.00 3.57
2737 3035 0.394938 ATGGTGGACGTACTGCAACA 59.605 50.000 0.00 6.93 43.00 3.33
2738 3036 0.394938 TGGTGGACGTACTGCAACAT 59.605 50.000 0.00 0.00 31.87 2.71
2739 3037 1.076332 GGTGGACGTACTGCAACATC 58.924 55.000 0.00 0.00 0.00 3.06
2744 3042 2.609491 GGACGTACTGCAACATCTGACA 60.609 50.000 0.00 0.00 0.00 3.58
2745 3043 2.663602 GACGTACTGCAACATCTGACAG 59.336 50.000 0.00 0.00 36.11 3.51
2746 3044 2.296190 ACGTACTGCAACATCTGACAGA 59.704 45.455 7.80 7.80 34.88 3.41
2747 3045 2.663602 CGTACTGCAACATCTGACAGAC 59.336 50.000 7.47 0.00 34.88 3.51
2753 3054 1.979469 CAACATCTGACAGACGACGAC 59.021 52.381 7.47 0.00 0.00 4.34
2774 3075 2.692741 CTCCCCCACCCCCTCTTC 60.693 72.222 0.00 0.00 0.00 2.87
2786 3087 2.273179 CCTCTTCGACGGGACACCA 61.273 63.158 0.00 0.00 36.13 4.17
2787 3088 1.080705 CTCTTCGACGGGACACCAC 60.081 63.158 0.00 0.00 36.13 4.16
2788 3089 2.048503 CTTCGACGGGACACCACC 60.049 66.667 0.00 0.00 36.13 4.61
2789 3090 2.838693 TTCGACGGGACACCACCA 60.839 61.111 0.00 0.00 36.13 4.17
2804 3105 1.512926 CACCAGTGGTCTTGCAGTAC 58.487 55.000 13.31 0.00 31.02 2.73
2817 3118 1.927210 CAGTACGCGGATGACATGC 59.073 57.895 12.47 0.00 0.00 4.06
2818 3119 0.528466 CAGTACGCGGATGACATGCT 60.528 55.000 12.47 0.00 0.00 3.79
2819 3120 0.175760 AGTACGCGGATGACATGCTT 59.824 50.000 12.47 0.00 0.00 3.91
2820 3121 0.301687 GTACGCGGATGACATGCTTG 59.698 55.000 12.47 0.00 0.00 4.01
2840 3141 2.035469 ATCATGCGTGCCAACCCA 59.965 55.556 0.00 0.00 0.00 4.51
2841 3142 1.606025 ATCATGCGTGCCAACCCAA 60.606 52.632 0.00 0.00 0.00 4.12
2842 3143 1.184322 ATCATGCGTGCCAACCCAAA 61.184 50.000 0.00 0.00 0.00 3.28
2846 3147 0.538516 TGCGTGCCAACCCAAATAGT 60.539 50.000 0.00 0.00 0.00 2.12
2848 3149 1.668628 GCGTGCCAACCCAAATAGTTG 60.669 52.381 0.00 0.00 43.41 3.16
2856 3157 0.808755 CCCAAATAGTTGCCGACCAC 59.191 55.000 0.00 0.00 33.01 4.16
2859 3160 2.097466 CCAAATAGTTGCCGACCACATC 59.903 50.000 0.00 0.00 33.01 3.06
2860 3161 5.314353 CCAAATAGTTGCCGACCACATCG 62.314 52.174 0.00 0.00 40.08 3.84
2871 3172 2.351418 CGACCACATCGTTTACATGCAT 59.649 45.455 0.00 0.00 46.25 3.96
2873 3174 3.081061 ACCACATCGTTTACATGCATGT 58.919 40.909 33.20 33.20 44.48 3.21
2874 3175 3.126858 ACCACATCGTTTACATGCATGTC 59.873 43.478 34.54 19.79 41.97 3.06
2875 3176 3.126686 CCACATCGTTTACATGCATGTCA 59.873 43.478 34.54 22.40 41.97 3.58
2876 3177 4.379290 CCACATCGTTTACATGCATGTCAA 60.379 41.667 34.54 26.75 41.97 3.18
2877 3178 4.554586 CACATCGTTTACATGCATGTCAAC 59.445 41.667 32.76 32.76 41.97 3.18
2878 3179 3.822594 TCGTTTACATGCATGTCAACC 57.177 42.857 34.54 23.35 40.15 3.77
2879 3180 2.486203 TCGTTTACATGCATGTCAACCC 59.514 45.455 34.54 20.89 40.15 4.11
2884 3185 0.448990 CATGCATGTCAACCCACTCG 59.551 55.000 18.91 0.00 0.00 4.18
2913 3215 1.812507 GGTGTGATACGGGCGAACC 60.813 63.158 0.00 0.00 0.00 3.62
2914 3216 1.079681 GTGTGATACGGGCGAACCA 60.080 57.895 0.00 0.00 40.22 3.67
2916 3218 0.461163 TGTGATACGGGCGAACCATG 60.461 55.000 0.00 0.00 40.22 3.66
2936 3238 1.749258 GGATGGCCCGTTCTTCACC 60.749 63.158 0.00 0.00 0.00 4.02
2940 3242 0.693622 TGGCCCGTTCTTCACCAATA 59.306 50.000 0.00 0.00 0.00 1.90
2953 3255 5.887598 TCTTCACCAATAGGATGTGGATTTG 59.112 40.000 0.00 0.00 38.36 2.32
2959 3261 6.378280 ACCAATAGGATGTGGATTTGAGAAAC 59.622 38.462 0.00 0.00 38.36 2.78
2963 3265 5.139727 AGGATGTGGATTTGAGAAACAACA 58.860 37.500 0.00 0.00 38.29 3.33
2965 3267 5.221224 GGATGTGGATTTGAGAAACAACACA 60.221 40.000 0.00 0.00 42.62 3.72
2968 3270 5.866633 TGTGGATTTGAGAAACAACACAAAC 59.133 36.000 0.00 0.00 38.83 2.93
2975 3277 4.979197 TGAGAAACAACACAAACAACACAC 59.021 37.500 0.00 0.00 0.00 3.82
2976 3278 4.938080 AGAAACAACACAAACAACACACA 58.062 34.783 0.00 0.00 0.00 3.72
2977 3279 5.352284 AGAAACAACACAAACAACACACAA 58.648 33.333 0.00 0.00 0.00 3.33
2980 3282 6.422776 AACAACACAAACAACACACAAAAA 57.577 29.167 0.00 0.00 0.00 1.94
3006 3333 2.025981 TGATGGGAGGAATCACACAAGG 60.026 50.000 0.00 0.00 0.00 3.61
3008 3335 2.626785 TGGGAGGAATCACACAAGGTA 58.373 47.619 0.00 0.00 0.00 3.08
3040 3367 8.727100 AAGATATACATAGGATCCAACTCACA 57.273 34.615 15.82 0.00 0.00 3.58
3041 3368 8.907829 AGATATACATAGGATCCAACTCACAT 57.092 34.615 15.82 0.00 0.00 3.21
3042 3369 9.997172 AGATATACATAGGATCCAACTCACATA 57.003 33.333 15.82 3.04 0.00 2.29
3054 3393 5.716703 TCCAACTCACATACAAGAGAGATGA 59.283 40.000 0.00 0.00 33.20 2.92
3069 3408 8.655092 CAAGAGAGATGAAACAAGATAGTGTTC 58.345 37.037 0.00 0.00 40.86 3.18
3074 3413 9.213799 GAGATGAAACAAGATAGTGTTCTTTCT 57.786 33.333 0.00 0.00 40.86 2.52
3077 3416 8.370493 TGAAACAAGATAGTGTTCTTTCTCAG 57.630 34.615 0.00 0.00 40.86 3.35
3087 3426 4.468153 GTGTTCTTTCTCAGGTCCTAGGAT 59.532 45.833 16.27 0.00 0.00 3.24
3091 3430 6.093617 TCTTTCTCAGGTCCTAGGATAAGT 57.906 41.667 16.27 0.00 0.00 2.24
3110 3449 5.975988 AAGTTGGGCTTGATATTCCTAGA 57.024 39.130 0.00 0.00 35.80 2.43
3119 3505 4.749048 TGATATTCCTAGAGCTCCCTCA 57.251 45.455 10.93 0.00 40.68 3.86
3141 3527 3.084786 GGAGGTCTTGTTTTCCATGAGG 58.915 50.000 0.00 0.00 0.00 3.86
3142 3528 3.244911 GGAGGTCTTGTTTTCCATGAGGA 60.245 47.826 0.00 0.00 43.93 3.71
3143 3529 4.006319 GAGGTCTTGTTTTCCATGAGGAG 58.994 47.826 0.00 0.00 46.74 3.69
3150 3536 5.246981 TGTTTTCCATGAGGAGTCATCTT 57.753 39.130 6.33 0.00 46.74 2.40
3156 3542 4.135306 CCATGAGGAGTCATCTTCAATGG 58.865 47.826 6.33 6.89 43.88 3.16
3173 3559 2.478872 TGGAGGAATCCCACTAGAGG 57.521 55.000 0.00 0.00 33.88 3.69
3174 3560 1.937350 TGGAGGAATCCCACTAGAGGA 59.063 52.381 7.92 8.20 37.93 3.71
3175 3561 2.091055 TGGAGGAATCCCACTAGAGGAG 60.091 54.545 7.92 0.00 36.67 3.69
3176 3562 2.604139 GAGGAATCCCACTAGAGGAGG 58.396 57.143 7.92 0.00 36.67 4.30
3211 3598 9.050601 CAAAGTTCTCTTGTCTCTAATCTTTGT 57.949 33.333 0.00 0.00 35.69 2.83
3220 3607 7.113658 TGTCTCTAATCTTTGTTAGCCCTAG 57.886 40.000 0.00 0.00 32.85 3.02
3222 3609 7.565398 TGTCTCTAATCTTTGTTAGCCCTAGAT 59.435 37.037 0.00 0.00 32.85 1.98
3225 3612 8.554490 TCTAATCTTTGTTAGCCCTAGATCTT 57.446 34.615 0.00 0.00 32.85 2.40
3272 3659 4.519610 CCACAAAGGGGGAAGTGG 57.480 61.111 0.00 0.00 44.72 4.00
3279 3666 0.404346 AAGGGGGAAGTGGGAAAGGA 60.404 55.000 0.00 0.00 0.00 3.36
3302 3689 6.324770 GGAAAGATACATGGATTGGACCAAAT 59.675 38.462 11.82 0.00 43.47 2.32
3325 3712 4.927782 GCACACAGGCACGGGTCA 62.928 66.667 0.00 0.00 0.00 4.02
3332 3719 0.606401 CAGGCACGGGTCAGACATTT 60.606 55.000 2.17 0.00 0.00 2.32
3357 3744 3.582647 ACATGTCGGATATTCTGGCCATA 59.417 43.478 5.51 0.00 0.00 2.74
3361 3748 4.102524 TGTCGGATATTCTGGCCATAAGTT 59.897 41.667 5.51 0.00 0.00 2.66
3366 3753 6.591834 CGGATATTCTGGCCATAAGTTAGAAG 59.408 42.308 5.51 0.00 31.67 2.85
3367 3754 7.525526 CGGATATTCTGGCCATAAGTTAGAAGA 60.526 40.741 5.51 1.57 31.67 2.87
3368 3755 8.325046 GGATATTCTGGCCATAAGTTAGAAGAT 58.675 37.037 5.51 7.21 33.49 2.40
3369 3756 9.160496 GATATTCTGGCCATAAGTTAGAAGATG 57.840 37.037 5.51 0.00 31.66 2.90
3370 3757 4.708177 TCTGGCCATAAGTTAGAAGATGC 58.292 43.478 5.51 0.00 0.00 3.91
3375 3762 5.590259 GGCCATAAGTTAGAAGATGCTTCAA 59.410 40.000 0.00 0.43 0.00 2.69
3401 3788 7.664318 AGGTTAATTGACCCAACCGATATATTC 59.336 37.037 15.41 0.00 45.22 1.75
3440 3827 5.523013 GCTTAGAGCATATCCGACAATTC 57.477 43.478 0.00 0.00 41.89 2.17
3442 3829 3.409026 AGAGCATATCCGACAATTCCC 57.591 47.619 0.00 0.00 0.00 3.97
3446 3833 2.293399 GCATATCCGACAATTCCCCAAC 59.707 50.000 0.00 0.00 0.00 3.77
3450 3837 1.957877 TCCGACAATTCCCCAACAAAC 59.042 47.619 0.00 0.00 0.00 2.93
3452 3839 1.000394 CGACAATTCCCCAACAAACCC 60.000 52.381 0.00 0.00 0.00 4.11
3458 3845 4.924187 CCCAACAAACCCCCGCCA 62.924 66.667 0.00 0.00 0.00 5.69
3484 3871 3.013648 AGTGGTTATTAGGACTCTCCCCA 59.986 47.826 0.00 0.00 37.19 4.96
3485 3872 3.974642 GTGGTTATTAGGACTCTCCCCAT 59.025 47.826 0.00 0.00 37.19 4.00
3486 3873 5.102783 AGTGGTTATTAGGACTCTCCCCATA 60.103 44.000 0.00 0.00 37.19 2.74
3487 3874 5.605488 GTGGTTATTAGGACTCTCCCCATAA 59.395 44.000 0.00 0.00 37.19 1.90
3491 3878 8.887393 GGTTATTAGGACTCTCCCCATAATTTA 58.113 37.037 0.00 0.00 37.19 1.40
3492 3879 9.945904 GTTATTAGGACTCTCCCCATAATTTAG 57.054 37.037 0.00 0.00 37.19 1.85
3493 3880 7.575499 ATTAGGACTCTCCCCATAATTTAGG 57.425 40.000 0.00 0.00 37.19 2.69
3494 3881 4.243643 AGGACTCTCCCCATAATTTAGGG 58.756 47.826 7.71 7.71 45.04 3.53
3523 3910 1.334160 GGGGATGGTCGGTTGTTTTT 58.666 50.000 0.00 0.00 0.00 1.94
3531 3918 0.741915 TCGGTTGTTTTTGCACCTCC 59.258 50.000 0.00 0.00 0.00 4.30
3539 3926 3.070302 TGTTTTTGCACCTCCCCAATAAC 59.930 43.478 0.00 0.00 35.14 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.605634 TCAAACATATCGGTTGGGTCAG 58.394 45.455 3.97 0.00 0.00 3.51
31 32 3.367910 GGGCTACTCAGATCCGATTCATC 60.368 52.174 0.00 0.00 0.00 2.92
132 133 1.886542 AGGCTTGGTTTGTTTCGATCC 59.113 47.619 0.00 0.00 0.00 3.36
215 221 1.287425 GAAATCGAAGATCGGCCGTT 58.713 50.000 27.15 18.42 45.12 4.44
441 531 4.889856 TCCGGCGTGGCATCATCG 62.890 66.667 6.01 0.00 37.80 3.84
582 672 4.681978 GAGGGCGAGCGTGTTGGT 62.682 66.667 0.00 0.00 0.00 3.67
631 721 2.279517 CACCTCGGCAGGATACGC 60.280 66.667 9.53 0.00 43.65 4.42
633 723 1.442148 GGACACCTCGGCAGGATAC 59.558 63.158 9.53 1.59 43.65 2.24
722 836 2.434359 CCACGCCCGGAGAGAAAC 60.434 66.667 0.73 0.00 0.00 2.78
723 837 1.760479 TTTCCACGCCCGGAGAGAAA 61.760 55.000 0.73 9.04 36.12 2.52
733 847 3.719144 CGGGTTCGTTTCCACGCC 61.719 66.667 0.00 0.00 46.70 5.68
996 1110 2.954756 CTTGTCGATCGCGCATTGCC 62.955 60.000 11.09 0.00 42.08 4.52
1011 1125 2.428890 CTCATACCTTCGAGGAGCTTGT 59.571 50.000 7.76 0.00 37.67 3.16
1017 1131 0.395311 ACGGCTCATACCTTCGAGGA 60.395 55.000 7.76 0.00 37.67 3.71
1099 1213 2.759191 TGCCTGCTGATCATAATCGTC 58.241 47.619 0.00 0.00 34.39 4.20
1126 1240 4.742201 TCGAGGCGCTTGCTGGTC 62.742 66.667 7.64 0.00 39.13 4.02
1128 1242 3.494336 CTTCGAGGCGCTTGCTGG 61.494 66.667 7.64 0.00 39.13 4.85
1245 1359 1.429148 GCCTTTCGTCGCCATGGTAG 61.429 60.000 14.67 8.34 0.00 3.18
1275 1389 1.805945 GTAGCCACGTTGAGCTCGG 60.806 63.158 9.64 4.65 40.56 4.63
1395 1509 1.183030 TCTGAACTTCTTCCGCCGGA 61.183 55.000 5.05 0.00 0.00 5.14
1409 1523 1.140161 CGATACCCGCCGTTCTGAA 59.860 57.895 0.00 0.00 0.00 3.02
1430 1544 1.030457 CGGAATACGCTCCCTGTACT 58.970 55.000 0.00 0.00 34.82 2.73
1431 1545 0.031721 CCGGAATACGCTCCCTGTAC 59.968 60.000 0.00 0.00 42.52 2.90
1432 1546 1.741327 GCCGGAATACGCTCCCTGTA 61.741 60.000 5.05 0.00 42.52 2.74
1433 1547 3.090219 GCCGGAATACGCTCCCTGT 62.090 63.158 5.05 0.00 42.52 4.00
1434 1548 2.280186 GCCGGAATACGCTCCCTG 60.280 66.667 5.05 0.00 42.52 4.45
1435 1549 3.912907 CGCCGGAATACGCTCCCT 61.913 66.667 5.05 0.00 42.52 4.20
1519 1633 2.102252 GCTGATAGTAAGGCTGAGCTGT 59.898 50.000 3.72 0.00 0.00 4.40
1564 1678 1.261238 ACGGCTGGAGGAGAAGGAAG 61.261 60.000 0.00 0.00 0.00 3.46
1576 1690 4.147449 TGCATCCTCGACGGCTGG 62.147 66.667 0.00 0.00 29.44 4.85
1578 1692 2.650116 AAGTGCATCCTCGACGGCT 61.650 57.895 0.00 0.00 0.00 5.52
1612 1726 3.243053 TCCAAAGCCCCGGTCGAA 61.243 61.111 0.00 0.00 0.00 3.71
1623 1737 3.376546 GCTTCTTCTGCATAGGTCCAAAG 59.623 47.826 0.00 0.00 0.00 2.77
1633 1747 2.355920 CCCTCTTCTGCTTCTTCTGCAT 60.356 50.000 0.00 0.00 39.86 3.96
1668 1782 1.066858 GTGGAGGATGACATGTCGTGT 60.067 52.381 25.03 11.89 45.83 4.49
1669 1783 1.645034 GTGGAGGATGACATGTCGTG 58.355 55.000 25.03 0.00 0.00 4.35
1670 1784 0.537188 GGTGGAGGATGACATGTCGT 59.463 55.000 20.50 20.50 0.00 4.34
1671 1785 0.179073 GGGTGGAGGATGACATGTCG 60.179 60.000 20.54 0.00 0.00 4.35
1672 1786 0.911769 TGGGTGGAGGATGACATGTC 59.088 55.000 19.27 19.27 0.00 3.06
1673 1787 1.283029 CTTGGGTGGAGGATGACATGT 59.717 52.381 0.00 0.00 0.00 3.21
1674 1788 1.561076 TCTTGGGTGGAGGATGACATG 59.439 52.381 0.00 0.00 0.00 3.21
1675 1789 1.561542 GTCTTGGGTGGAGGATGACAT 59.438 52.381 0.00 0.00 0.00 3.06
1676 1790 0.984230 GTCTTGGGTGGAGGATGACA 59.016 55.000 0.00 0.00 0.00 3.58
1677 1791 0.108138 CGTCTTGGGTGGAGGATGAC 60.108 60.000 0.00 0.00 0.00 3.06
1678 1792 0.252057 TCGTCTTGGGTGGAGGATGA 60.252 55.000 0.00 0.00 0.00 2.92
1679 1793 0.108138 GTCGTCTTGGGTGGAGGATG 60.108 60.000 0.00 0.00 31.75 3.51
1680 1794 1.265454 GGTCGTCTTGGGTGGAGGAT 61.265 60.000 0.00 0.00 31.75 3.24
1681 1795 1.911766 GGTCGTCTTGGGTGGAGGA 60.912 63.158 0.00 0.00 0.00 3.71
1682 1796 1.889530 GAGGTCGTCTTGGGTGGAGG 61.890 65.000 0.00 0.00 0.00 4.30
1683 1797 1.592223 GAGGTCGTCTTGGGTGGAG 59.408 63.158 0.00 0.00 0.00 3.86
1684 1798 1.911766 GGAGGTCGTCTTGGGTGGA 60.912 63.158 0.00 0.00 0.00 4.02
1685 1799 1.481056 AAGGAGGTCGTCTTGGGTGG 61.481 60.000 0.00 0.00 0.00 4.61
1686 1800 0.037232 GAAGGAGGTCGTCTTGGGTG 60.037 60.000 0.00 0.00 0.00 4.61
1687 1801 1.192803 GGAAGGAGGTCGTCTTGGGT 61.193 60.000 0.00 0.00 0.00 4.51
1733 1847 2.757099 CCATGTCCTGGGCTTGGC 60.757 66.667 18.88 0.00 41.82 4.52
1742 1856 1.679305 AGCGTCGAGTCCATGTCCT 60.679 57.895 0.00 0.00 0.00 3.85
1764 1878 0.629058 GGGCCTTTGGGATCCAGTTA 59.371 55.000 15.23 0.00 33.81 2.24
1956 2070 2.421739 GCGATCGCCCTGTATGGT 59.578 61.111 29.48 0.00 34.56 3.55
2080 2206 6.690194 AAATTTATGAGCTCTGGTGATGAC 57.310 37.500 16.19 0.00 0.00 3.06
2081 2207 6.405065 GCAAAATTTATGAGCTCTGGTGATGA 60.405 38.462 16.19 0.00 0.00 2.92
2082 2208 5.747197 GCAAAATTTATGAGCTCTGGTGATG 59.253 40.000 16.19 6.02 0.00 3.07
2121 2271 2.511600 GCGCGTAGGCACCTGAAT 60.512 61.111 8.43 0.00 39.92 2.57
2146 2296 9.102757 CTTAAAGTTGTATAGCAGATCACACAT 57.897 33.333 0.00 0.00 0.00 3.21
2147 2297 7.064609 GCTTAAAGTTGTATAGCAGATCACACA 59.935 37.037 0.00 0.00 0.00 3.72
2157 2307 5.183228 TCACCTGGCTTAAAGTTGTATAGC 58.817 41.667 0.00 0.00 0.00 2.97
2158 2308 7.681939 TTTCACCTGGCTTAAAGTTGTATAG 57.318 36.000 0.00 0.00 0.00 1.31
2165 2324 5.977489 GGTAATTTCACCTGGCTTAAAGT 57.023 39.130 0.00 0.00 35.55 2.66
2185 2344 4.634443 GCACGAGTGGAAAAACATATAGGT 59.366 41.667 5.32 0.00 0.00 3.08
2189 2348 5.643379 AATGCACGAGTGGAAAAACATAT 57.357 34.783 0.82 0.00 33.77 1.78
2190 2349 6.751514 ATAATGCACGAGTGGAAAAACATA 57.248 33.333 0.82 0.00 33.77 2.29
2193 2352 5.344933 GGAAATAATGCACGAGTGGAAAAAC 59.655 40.000 0.82 0.00 33.77 2.43
2194 2353 5.465935 GGAAATAATGCACGAGTGGAAAAA 58.534 37.500 0.82 0.00 33.77 1.94
2199 2358 2.643551 AGGGAAATAATGCACGAGTGG 58.356 47.619 5.32 0.00 0.00 4.00
2205 2365 5.914898 AACCACTAAGGGAAATAATGCAC 57.085 39.130 0.00 0.00 43.89 4.57
2211 2371 9.449896 TGGTGTATATAACCACTAAGGGAAATA 57.550 33.333 10.81 0.00 42.82 1.40
2229 2389 7.201884 GGAGACTTGTAGTGCTATTGGTGTATA 60.202 40.741 0.00 0.00 0.00 1.47
2238 2398 2.032620 CCCGGAGACTTGTAGTGCTAT 58.967 52.381 0.73 0.00 0.00 2.97
2242 2402 1.218316 GGCCCGGAGACTTGTAGTG 59.782 63.158 0.73 0.00 0.00 2.74
2243 2403 0.971447 GAGGCCCGGAGACTTGTAGT 60.971 60.000 0.73 0.00 0.00 2.73
2245 2405 2.050350 CGAGGCCCGGAGACTTGTA 61.050 63.158 0.73 0.00 33.91 2.41
2246 2406 3.382832 CGAGGCCCGGAGACTTGT 61.383 66.667 0.73 0.00 33.91 3.16
2247 2407 3.068691 TCGAGGCCCGGAGACTTG 61.069 66.667 0.73 4.64 39.14 3.16
2256 2416 3.771160 ACATGTCCGTCGAGGCCC 61.771 66.667 0.00 0.00 40.77 5.80
2257 2417 2.509336 CACATGTCCGTCGAGGCC 60.509 66.667 0.00 0.00 40.77 5.19
2261 2471 1.443702 CTTCGCACATGTCCGTCGA 60.444 57.895 9.37 6.96 0.00 4.20
2266 2476 2.010145 TAGAAGCTTCGCACATGTCC 57.990 50.000 20.43 0.00 0.00 4.02
2270 2480 2.831333 CCTGATAGAAGCTTCGCACAT 58.169 47.619 20.43 12.26 0.00 3.21
2273 2483 0.826715 AGCCTGATAGAAGCTTCGCA 59.173 50.000 20.43 17.56 31.27 5.10
2276 2486 2.158986 TCAGCAGCCTGATAGAAGCTTC 60.159 50.000 19.11 19.11 42.98 3.86
2288 2498 4.385405 GCCGTGTCTCAGCAGCCT 62.385 66.667 0.00 0.00 0.00 4.58
2338 2618 2.600867 GCTCGTAGCAGAGAATGTTGAC 59.399 50.000 7.86 0.00 41.89 3.18
2339 2619 2.417379 GGCTCGTAGCAGAGAATGTTGA 60.417 50.000 7.86 0.00 44.75 3.18
2344 2624 1.472376 GCAAGGCTCGTAGCAGAGAAT 60.472 52.381 7.86 0.00 44.75 2.40
2345 2625 0.108615 GCAAGGCTCGTAGCAGAGAA 60.109 55.000 7.86 0.00 44.75 2.87
2346 2626 0.967887 AGCAAGGCTCGTAGCAGAGA 60.968 55.000 7.86 0.00 44.75 3.10
2347 2627 0.741326 TAGCAAGGCTCGTAGCAGAG 59.259 55.000 8.71 0.00 44.75 3.35
2348 2628 0.741326 CTAGCAAGGCTCGTAGCAGA 59.259 55.000 8.71 0.00 44.75 4.26
2349 2629 0.873743 GCTAGCAAGGCTCGTAGCAG 60.874 60.000 10.63 6.91 44.75 4.24
2350 2630 1.141881 GCTAGCAAGGCTCGTAGCA 59.858 57.895 10.63 0.00 44.75 3.49
2351 2631 1.592939 GGCTAGCAAGGCTCGTAGC 60.593 63.158 18.24 12.12 44.73 3.58
2352 2632 1.299468 CGGCTAGCAAGGCTCGTAG 60.299 63.158 18.24 0.00 45.93 3.51
2353 2633 2.782222 CCGGCTAGCAAGGCTCGTA 61.782 63.158 18.24 0.00 45.93 3.43
2354 2634 4.148825 CCGGCTAGCAAGGCTCGT 62.149 66.667 18.24 0.00 45.93 4.18
2359 2639 4.783621 TGCAGCCGGCTAGCAAGG 62.784 66.667 35.61 23.29 45.15 3.61
2360 2640 2.747460 TTGCAGCCGGCTAGCAAG 60.747 61.111 38.96 26.81 42.71 4.01
2361 2641 3.055719 GTTGCAGCCGGCTAGCAA 61.056 61.111 38.96 38.96 45.07 3.91
2371 2651 0.524816 CATTGATCTGGCGTTGCAGC 60.525 55.000 0.00 0.00 0.00 5.25
2372 2652 0.099968 CCATTGATCTGGCGTTGCAG 59.900 55.000 0.00 0.00 0.00 4.41
2408 2693 3.884900 GGTGATGAAACCGGACCG 58.115 61.111 9.46 6.99 0.00 4.79
2428 2713 2.119801 AGTTCTCGGAAATGCTGCAT 57.880 45.000 9.81 9.81 0.00 3.96
2449 2734 4.172505 GCATCATCTTAGAGGCATAGACG 58.827 47.826 0.00 0.00 44.15 4.18
2481 2766 0.108585 AGTTGGGATGACACGCTTGT 59.891 50.000 0.00 0.00 39.32 3.16
2516 2801 1.021390 ATCGAAGGCTTGGCGAAGTG 61.021 55.000 13.93 0.00 37.60 3.16
2517 2802 0.321653 AATCGAAGGCTTGGCGAAGT 60.322 50.000 13.93 4.16 37.60 3.01
2519 2804 0.321210 TGAATCGAAGGCTTGGCGAA 60.321 50.000 13.93 0.00 37.60 4.70
2520 2805 0.321210 TTGAATCGAAGGCTTGGCGA 60.321 50.000 3.46 9.21 38.51 5.54
2521 2806 0.734889 ATTGAATCGAAGGCTTGGCG 59.265 50.000 3.46 2.70 0.00 5.69
2522 2807 1.745087 TCATTGAATCGAAGGCTTGGC 59.255 47.619 3.46 0.00 0.00 4.52
2523 2808 4.025015 CTTCATTGAATCGAAGGCTTGG 57.975 45.455 3.46 2.89 35.93 3.61
2543 2828 1.617804 CCCAATCTGCACCAATGTCCT 60.618 52.381 0.00 0.00 0.00 3.85
2544 2829 0.819582 CCCAATCTGCACCAATGTCC 59.180 55.000 0.00 0.00 0.00 4.02
2545 2830 0.819582 CCCCAATCTGCACCAATGTC 59.180 55.000 0.00 0.00 0.00 3.06
2546 2831 0.409092 TCCCCAATCTGCACCAATGT 59.591 50.000 0.00 0.00 0.00 2.71
2547 2832 1.559368 TTCCCCAATCTGCACCAATG 58.441 50.000 0.00 0.00 0.00 2.82
2558 2843 5.218179 TGCATCTCCATAATTTTCCCCAAT 58.782 37.500 0.00 0.00 0.00 3.16
2562 2847 4.562143 GCCATGCATCTCCATAATTTTCCC 60.562 45.833 0.00 0.00 0.00 3.97
2567 2852 4.220724 ACAAGCCATGCATCTCCATAATT 58.779 39.130 0.00 0.00 0.00 1.40
2570 2855 2.487805 GGACAAGCCATGCATCTCCATA 60.488 50.000 0.00 0.00 36.34 2.74
2572 2857 0.394762 GGACAAGCCATGCATCTCCA 60.395 55.000 0.00 0.00 36.34 3.86
2577 2862 0.464373 CGGTAGGACAAGCCATGCAT 60.464 55.000 0.00 0.00 40.02 3.96
2588 2873 4.446413 CCGCACCACCGGTAGGAC 62.446 72.222 24.32 16.06 43.24 3.85
2603 2888 1.202734 ACAATGAGATCCATCCAGCCG 60.203 52.381 0.00 0.00 33.53 5.52
2605 2890 2.228059 CCACAATGAGATCCATCCAGC 58.772 52.381 0.00 0.00 33.53 4.85
2609 2894 3.209410 GTGGACCACAATGAGATCCATC 58.791 50.000 20.14 0.00 41.38 3.51
2621 2906 2.484065 CGTTAAGAAGGTGTGGACCACA 60.484 50.000 23.72 23.72 45.98 4.17
2622 2907 2.140717 CGTTAAGAAGGTGTGGACCAC 58.859 52.381 18.28 18.28 45.98 4.16
2624 2909 1.071228 ACCGTTAAGAAGGTGTGGACC 59.929 52.381 0.00 0.00 43.52 4.46
2625 2910 2.538512 ACCGTTAAGAAGGTGTGGAC 57.461 50.000 0.00 0.00 39.66 4.02
2631 2916 3.260128 CCCTAGAACACCGTTAAGAAGGT 59.740 47.826 0.00 0.00 42.34 3.50
2633 2918 4.796038 TCCCTAGAACACCGTTAAGAAG 57.204 45.455 0.00 0.00 0.00 2.85
2634 2919 4.590222 ACTTCCCTAGAACACCGTTAAGAA 59.410 41.667 0.00 0.00 0.00 2.52
2635 2920 4.021719 CACTTCCCTAGAACACCGTTAAGA 60.022 45.833 0.00 0.00 0.00 2.10
2643 2939 2.552743 GCAAACCACTTCCCTAGAACAC 59.447 50.000 0.00 0.00 0.00 3.32
2649 2945 0.475044 AACGGCAAACCACTTCCCTA 59.525 50.000 0.00 0.00 34.57 3.53
2660 2956 2.358247 GCCTCTCCGAACGGCAAA 60.358 61.111 8.48 0.00 43.25 3.68
2669 2965 2.586792 CCTCCAAAGGCCTCTCCG 59.413 66.667 5.23 0.00 40.77 4.63
2677 2973 2.193248 GGGGATCGCCTCCAAAGG 59.807 66.667 21.11 0.00 46.98 3.11
2679 2975 1.306997 AGAGGGGATCGCCTCCAAA 60.307 57.895 40.62 0.00 46.98 3.28
2681 2977 2.123251 GAGAGGGGATCGCCTCCA 60.123 66.667 40.62 0.00 46.98 3.86
2682 2978 2.920384 GGAGAGGGGATCGCCTCC 60.920 72.222 40.62 32.78 44.09 4.30
2697 2995 4.061131 TGAGAAGGAAGAGGTACATGGA 57.939 45.455 0.00 0.00 0.00 3.41
2714 3012 0.530744 GCAGTACGTCCACCATGAGA 59.469 55.000 0.00 0.00 0.00 3.27
2718 3016 0.394938 TGTTGCAGTACGTCCACCAT 59.605 50.000 0.00 0.00 0.00 3.55
2726 3024 2.663602 GTCTGTCAGATGTTGCAGTACG 59.336 50.000 5.68 0.00 34.56 3.67
2729 3027 1.341209 TCGTCTGTCAGATGTTGCAGT 59.659 47.619 19.34 0.00 34.56 4.40
2737 3035 1.088306 GAGGTCGTCGTCTGTCAGAT 58.912 55.000 5.68 0.00 0.00 2.90
2738 3036 0.954449 GGAGGTCGTCGTCTGTCAGA 60.954 60.000 0.00 0.00 0.00 3.27
2739 3037 0.956410 AGGAGGTCGTCGTCTGTCAG 60.956 60.000 2.61 0.00 0.00 3.51
2744 3042 2.045143 GGGAGGAGGTCGTCGTCT 60.045 66.667 13.27 0.00 39.60 4.18
2745 3043 3.139469 GGGGAGGAGGTCGTCGTC 61.139 72.222 6.68 6.68 39.05 4.20
2746 3044 4.755507 GGGGGAGGAGGTCGTCGT 62.756 72.222 0.00 0.00 0.00 4.34
2747 3045 4.753662 TGGGGGAGGAGGTCGTCG 62.754 72.222 0.00 0.00 0.00 5.12
2772 3073 2.838693 TGGTGGTGTCCCGTCGAA 60.839 61.111 0.00 0.00 0.00 3.71
2774 3075 3.612681 ACTGGTGGTGTCCCGTCG 61.613 66.667 0.00 0.00 0.00 5.12
2786 3087 0.033504 CGTACTGCAAGACCACTGGT 59.966 55.000 0.00 0.00 39.44 4.00
2787 3088 1.291877 GCGTACTGCAAGACCACTGG 61.292 60.000 5.07 0.00 45.45 4.00
2788 3089 1.617755 CGCGTACTGCAAGACCACTG 61.618 60.000 0.00 0.00 46.97 3.66
2789 3090 1.372997 CGCGTACTGCAAGACCACT 60.373 57.895 0.00 0.00 46.97 4.00
2804 3105 3.489731 ACAAGCATGTCATCCGCG 58.510 55.556 0.00 0.00 33.41 6.46
2817 3118 0.522626 TTGGCACGCATGATGACAAG 59.477 50.000 13.19 0.00 40.22 3.16
2818 3119 0.240678 GTTGGCACGCATGATGACAA 59.759 50.000 13.19 13.19 42.90 3.18
2819 3120 1.585267 GGTTGGCACGCATGATGACA 61.585 55.000 0.00 0.00 31.51 3.58
2820 3121 1.137404 GGTTGGCACGCATGATGAC 59.863 57.895 0.00 0.00 0.00 3.06
2826 3127 0.817013 CTATTTGGGTTGGCACGCAT 59.183 50.000 7.43 0.00 44.76 4.73
2829 3130 1.668628 GCAACTATTTGGGTTGGCACG 60.669 52.381 8.34 0.00 42.77 5.34
2840 3141 2.006888 CGATGTGGTCGGCAACTATTT 58.993 47.619 0.00 0.00 46.47 1.40
2841 3142 1.651987 CGATGTGGTCGGCAACTATT 58.348 50.000 0.00 0.00 46.47 1.73
2842 3143 3.362581 CGATGTGGTCGGCAACTAT 57.637 52.632 0.00 0.00 46.47 2.12
2860 3161 3.255642 AGTGGGTTGACATGCATGTAAAC 59.744 43.478 37.11 37.11 46.74 2.01
2863 3164 2.710377 GAGTGGGTTGACATGCATGTA 58.290 47.619 31.45 15.27 41.95 2.29
2864 3165 1.538047 GAGTGGGTTGACATGCATGT 58.462 50.000 31.82 31.82 45.16 3.21
2871 3172 0.317160 CTAGCACGAGTGGGTTGACA 59.683 55.000 5.32 0.00 0.00 3.58
2873 3174 0.601558 GTCTAGCACGAGTGGGTTGA 59.398 55.000 5.32 0.00 0.00 3.18
2874 3175 0.317160 TGTCTAGCACGAGTGGGTTG 59.683 55.000 5.32 0.00 0.00 3.77
2875 3176 0.317479 GTGTCTAGCACGAGTGGGTT 59.683 55.000 5.32 0.00 38.45 4.11
2876 3177 1.965219 GTGTCTAGCACGAGTGGGT 59.035 57.895 5.32 0.00 38.45 4.51
2877 3178 4.891566 GTGTCTAGCACGAGTGGG 57.108 61.111 5.32 0.00 38.45 4.61
2884 3185 2.527100 GTATCACACCGTGTCTAGCAC 58.473 52.381 0.00 7.10 44.36 4.40
2895 3196 1.812507 GGTTCGCCCGTATCACACC 60.813 63.158 0.00 0.00 0.00 4.16
2920 3222 0.039618 ATTGGTGAAGAACGGGCCAT 59.960 50.000 4.39 0.00 0.00 4.40
2928 3230 5.715439 ATCCACATCCTATTGGTGAAGAA 57.285 39.130 0.00 0.00 34.52 2.52
2936 3238 7.395190 TGTTTCTCAAATCCACATCCTATTG 57.605 36.000 0.00 0.00 0.00 1.90
2940 3242 5.010012 GTGTTGTTTCTCAAATCCACATCCT 59.990 40.000 0.00 0.00 37.81 3.24
2953 3255 4.979197 TGTGTGTTGTTTGTGTTGTTTCTC 59.021 37.500 0.00 0.00 0.00 2.87
2980 3282 4.018141 TGTGTGATTCCTCCCATCATCTTT 60.018 41.667 0.00 0.00 33.22 2.52
2983 3285 3.565764 TGTGTGATTCCTCCCATCATC 57.434 47.619 0.00 0.00 33.22 2.92
2988 3290 1.444933 ACCTTGTGTGATTCCTCCCA 58.555 50.000 0.00 0.00 0.00 4.37
3028 3355 6.214191 TCTCTCTTGTATGTGAGTTGGATC 57.786 41.667 0.00 0.00 0.00 3.36
3029 3356 6.382282 TCATCTCTCTTGTATGTGAGTTGGAT 59.618 38.462 0.00 0.00 32.56 3.41
3030 3357 5.716703 TCATCTCTCTTGTATGTGAGTTGGA 59.283 40.000 0.00 0.00 32.56 3.53
3031 3358 5.970592 TCATCTCTCTTGTATGTGAGTTGG 58.029 41.667 0.00 0.00 32.56 3.77
3032 3359 7.386025 TGTTTCATCTCTCTTGTATGTGAGTTG 59.614 37.037 0.00 0.00 32.77 3.16
3033 3360 7.445121 TGTTTCATCTCTCTTGTATGTGAGTT 58.555 34.615 0.00 0.00 0.00 3.01
3034 3361 6.997655 TGTTTCATCTCTCTTGTATGTGAGT 58.002 36.000 0.00 0.00 0.00 3.41
3037 3364 7.895975 TCTTGTTTCATCTCTCTTGTATGTG 57.104 36.000 0.00 0.00 0.00 3.21
3038 3365 9.814899 CTATCTTGTTTCATCTCTCTTGTATGT 57.185 33.333 0.00 0.00 0.00 2.29
3039 3366 9.814899 ACTATCTTGTTTCATCTCTCTTGTATG 57.185 33.333 0.00 0.00 0.00 2.39
3040 3367 9.814899 CACTATCTTGTTTCATCTCTCTTGTAT 57.185 33.333 0.00 0.00 0.00 2.29
3041 3368 8.807118 ACACTATCTTGTTTCATCTCTCTTGTA 58.193 33.333 0.00 0.00 0.00 2.41
3042 3369 7.675062 ACACTATCTTGTTTCATCTCTCTTGT 58.325 34.615 0.00 0.00 0.00 3.16
3043 3370 8.545229 AACACTATCTTGTTTCATCTCTCTTG 57.455 34.615 0.00 0.00 36.22 3.02
3054 3393 7.283329 ACCTGAGAAAGAACACTATCTTGTTT 58.717 34.615 0.00 0.00 39.88 2.83
3069 3408 6.407525 CCAACTTATCCTAGGACCTGAGAAAG 60.408 46.154 15.42 11.12 0.00 2.62
3074 3413 3.654273 CCCAACTTATCCTAGGACCTGA 58.346 50.000 15.42 0.00 0.00 3.86
3077 3416 2.409570 AGCCCAACTTATCCTAGGACC 58.590 52.381 15.42 0.00 0.00 4.46
3087 3426 6.464465 GCTCTAGGAATATCAAGCCCAACTTA 60.464 42.308 0.00 0.00 36.04 2.24
3091 3430 3.976654 AGCTCTAGGAATATCAAGCCCAA 59.023 43.478 0.00 0.00 0.00 4.12
3119 3505 3.245052 CCTCATGGAAAACAAGACCTCCT 60.245 47.826 0.00 0.00 34.57 3.69
3141 3527 5.062528 GGATTCCTCCATTGAAGATGACTC 58.937 45.833 0.00 0.00 41.64 3.36
3142 3528 4.141298 GGGATTCCTCCATTGAAGATGACT 60.141 45.833 2.01 0.00 44.08 3.41
3143 3529 4.140536 GGGATTCCTCCATTGAAGATGAC 58.859 47.826 2.01 0.00 44.08 3.06
3150 3536 3.969976 CTCTAGTGGGATTCCTCCATTGA 59.030 47.826 2.01 0.00 44.08 2.57
3156 3542 2.090999 ACCTCCTCTAGTGGGATTCCTC 60.091 54.545 10.89 0.00 33.09 3.71
3173 3559 5.337578 AGAGAACTTTGCTCATCTACCTC 57.662 43.478 0.00 0.00 34.85 3.85
3174 3560 5.012561 ACAAGAGAACTTTGCTCATCTACCT 59.987 40.000 0.00 0.00 34.85 3.08
3175 3561 5.241662 ACAAGAGAACTTTGCTCATCTACC 58.758 41.667 0.00 0.00 34.85 3.18
3176 3562 6.162777 AGACAAGAGAACTTTGCTCATCTAC 58.837 40.000 0.00 0.00 34.85 2.59
3211 3598 2.977808 CCCTCCAAGATCTAGGGCTAA 58.022 52.381 14.88 0.00 43.47 3.09
3235 3622 8.751215 TTGTGGAAGGACATATATATACCCTT 57.249 34.615 19.76 19.76 36.78 3.95
3236 3623 8.751215 TTTGTGGAAGGACATATATATACCCT 57.249 34.615 11.96 10.30 0.00 4.34
3257 3644 0.938192 TTTCCCACTTCCCCCTTTGT 59.062 50.000 0.00 0.00 0.00 2.83
3264 3651 2.971901 TCTTTCCTTTCCCACTTCCC 57.028 50.000 0.00 0.00 0.00 3.97
3266 3653 5.358160 CCATGTATCTTTCCTTTCCCACTTC 59.642 44.000 0.00 0.00 0.00 3.01
3272 3659 6.039829 GTCCAATCCATGTATCTTTCCTTTCC 59.960 42.308 0.00 0.00 0.00 3.13
3279 3666 7.738437 AATTTGGTCCAATCCATGTATCTTT 57.262 32.000 4.80 0.00 37.33 2.52
3332 3719 3.466836 GCCAGAATATCCGACATGTCAA 58.533 45.455 24.93 13.00 0.00 3.18
3357 3744 8.870075 ATTAACCTTGAAGCATCTTCTAACTT 57.130 30.769 7.91 0.00 0.00 2.66
3361 3748 7.336931 GGTCAATTAACCTTGAAGCATCTTCTA 59.663 37.037 7.91 0.28 36.92 2.10
3366 3753 4.462483 TGGGTCAATTAACCTTGAAGCATC 59.538 41.667 0.00 0.00 39.42 3.91
3367 3754 4.415596 TGGGTCAATTAACCTTGAAGCAT 58.584 39.130 0.00 0.00 39.42 3.79
3368 3755 3.838565 TGGGTCAATTAACCTTGAAGCA 58.161 40.909 0.00 0.00 39.42 3.91
3369 3756 4.556233 GTTGGGTCAATTAACCTTGAAGC 58.444 43.478 0.00 0.00 39.42 3.86
3370 3757 4.320935 CGGTTGGGTCAATTAACCTTGAAG 60.321 45.833 0.00 0.00 41.26 3.02
3375 3762 3.732048 ATCGGTTGGGTCAATTAACCT 57.268 42.857 0.00 0.00 41.26 3.50
3401 3788 3.278668 AAGCAGGGATTCTCATCACAG 57.721 47.619 0.00 0.00 34.88 3.66
3434 3821 1.429930 GGGGTTTGTTGGGGAATTGT 58.570 50.000 0.00 0.00 0.00 2.71
3437 3824 1.229051 CGGGGGTTTGTTGGGGAAT 60.229 57.895 0.00 0.00 0.00 3.01
3442 3829 0.900647 TATTGGCGGGGGTTTGTTGG 60.901 55.000 0.00 0.00 0.00 3.77
3446 3833 0.530288 CACTTATTGGCGGGGGTTTG 59.470 55.000 0.00 0.00 0.00 2.93
3457 3844 7.217906 GGGAGAGTCCTAATAACCACTTATTG 58.782 42.308 0.00 0.00 36.57 1.90
3458 3845 6.329460 GGGGAGAGTCCTAATAACCACTTATT 59.671 42.308 0.00 0.00 36.57 1.40
3506 3893 1.067821 TGCAAAAACAACCGACCATCC 59.932 47.619 0.00 0.00 0.00 3.51
3512 3899 0.741915 GGAGGTGCAAAAACAACCGA 59.258 50.000 0.00 0.00 0.00 4.69
3515 3902 0.827368 TGGGGAGGTGCAAAAACAAC 59.173 50.000 0.00 0.00 0.00 3.32
3516 3903 1.573108 TTGGGGAGGTGCAAAAACAA 58.427 45.000 0.00 0.00 0.00 2.83
3523 3910 1.367346 TGAGTTATTGGGGAGGTGCA 58.633 50.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.