Multiple sequence alignment - TraesCS1A01G274800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1A01G274800
chr1A
100.000
3362
0
0
1
3362
468846671
468850032
0.000000e+00
6209.0
1
TraesCS1A01G274800
chr1A
89.338
272
22
5
7
275
22980301
22980034
5.370000e-88
335.0
2
TraesCS1A01G274800
chr1A
87.356
174
19
1
1490
1663
14793998
14794168
2.650000e-46
196.0
3
TraesCS1A01G274800
chr1D
94.653
2319
72
28
417
2699
370213193
370215495
0.000000e+00
3548.0
4
TraesCS1A01G274800
chr1D
93.574
638
31
4
2735
3362
99803031
99803668
0.000000e+00
942.0
5
TraesCS1A01G274800
chr1B
96.243
2023
60
8
680
2699
493314939
493316948
0.000000e+00
3301.0
6
TraesCS1A01G274800
chr1B
83.070
632
75
17
2742
3362
655122710
655122100
2.280000e-151
545.0
7
TraesCS1A01G274800
chr1B
82.663
398
43
8
275
670
493314299
493314672
2.500000e-86
329.0
8
TraesCS1A01G274800
chr7A
93.407
637
33
3
2735
3362
183661015
183661651
0.000000e+00
935.0
9
TraesCS1A01G274800
chr7A
90.071
282
20
5
5
280
650970541
650970262
3.190000e-95
359.0
10
TraesCS1A01G274800
chr7A
90.253
277
22
2
7
278
139673871
139674147
1.150000e-94
357.0
11
TraesCS1A01G274800
chr7A
92.718
206
14
1
1824
2029
611294232
611294028
2.540000e-76
296.0
12
TraesCS1A01G274800
chr7A
93.452
168
11
0
1496
1663
611294400
611294233
2.000000e-62
250.0
13
TraesCS1A01G274800
chr7A
91.620
179
13
2
2102
2280
611294009
611293833
2.590000e-61
246.0
14
TraesCS1A01G274800
chr7D
93.103
638
34
4
2735
3362
610709963
610710600
0.000000e+00
926.0
15
TraesCS1A01G274800
chr5B
93.103
638
34
4
2735
3362
699407925
699407288
0.000000e+00
926.0
16
TraesCS1A01G274800
chr5B
94.253
174
10
0
1490
1663
54141461
54141634
1.990000e-67
267.0
17
TraesCS1A01G274800
chr5B
92.258
155
11
1
2119
2273
54141690
54141843
5.650000e-53
219.0
18
TraesCS1A01G274800
chr5B
100.000
31
0
0
2699
2729
599509431
599509461
1.300000e-04
58.4
19
TraesCS1A01G274800
chr3D
93.103
638
34
4
2735
3362
306014590
306013953
0.000000e+00
926.0
20
TraesCS1A01G274800
chr2D
92.947
638
35
5
2735
3362
638774779
638775416
0.000000e+00
920.0
21
TraesCS1A01G274800
chr2D
92.790
638
36
4
2735
3362
646037694
646038331
0.000000e+00
915.0
22
TraesCS1A01G274800
chr5D
92.790
638
36
4
2735
3362
287783048
287782411
0.000000e+00
915.0
23
TraesCS1A01G274800
chr4D
92.633
638
37
4
2735
3362
505811637
505812274
0.000000e+00
909.0
24
TraesCS1A01G274800
chr6A
90.110
273
21
3
12
280
123501207
123500937
1.920000e-92
350.0
25
TraesCS1A01G274800
chr6A
87.726
277
29
3
7
278
553098228
553097952
5.410000e-83
318.0
26
TraesCS1A01G274800
chr2A
90.110
273
21
4
7
275
765834697
765834967
1.920000e-92
350.0
27
TraesCS1A01G274800
chr2A
92.647
204
14
1
1826
2029
103096876
103096674
3.280000e-75
292.0
28
TraesCS1A01G274800
chr2A
94.413
179
8
2
2102
2280
103096655
103096479
1.190000e-69
274.0
29
TraesCS1A01G274800
chr2A
94.767
172
9
0
2102
2273
24419319
24419490
5.530000e-68
268.0
30
TraesCS1A01G274800
chr2A
94.643
168
9
0
1496
1663
103097046
103096879
9.250000e-66
261.0
31
TraesCS1A01G274800
chr2A
91.379
174
15
0
1490
1663
24418970
24419143
4.340000e-59
239.0
32
TraesCS1A01G274800
chr2A
94.488
127
7
0
1824
1950
24419144
24419270
2.650000e-46
196.0
33
TraesCS1A01G274800
chr4A
89.963
269
22
2
15
278
186693404
186693136
3.210000e-90
342.0
34
TraesCS1A01G274800
chr4A
88.172
279
24
5
5
278
77141017
77140743
1.160000e-84
324.0
35
TraesCS1A01G274800
chr5A
89.493
276
19
7
5
275
461591223
461591493
1.160000e-89
340.0
36
TraesCS1A01G274800
chr3A
92.718
206
14
1
1824
2029
717886389
717886593
2.540000e-76
296.0
37
TraesCS1A01G274800
chr3A
94.186
172
10
0
2102
2273
717886612
717886783
2.570000e-66
263.0
38
TraesCS1A01G274800
chr3A
93.103
174
12
0
1490
1663
717886215
717886388
4.300000e-64
255.0
39
TraesCS1A01G274800
chr4B
94.643
168
9
0
1496
1663
649125529
649125362
9.250000e-66
261.0
40
TraesCS1A01G274800
chr4B
91.358
162
12
2
2119
2280
649125306
649125147
1.570000e-53
220.0
41
TraesCS1A01G274800
chr4B
90.476
63
6
0
1824
1886
649125361
649125299
2.150000e-12
84.2
42
TraesCS1A01G274800
chr6D
89.873
79
6
2
1909
1987
298955081
298955157
2.130000e-17
100.0
43
TraesCS1A01G274800
chr6D
89.873
79
6
2
1909
1987
454584117
454584041
2.130000e-17
100.0
44
TraesCS1A01G274800
chr7B
92.500
40
3
0
2697
2736
384651821
384651782
1.300000e-04
58.4
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1A01G274800
chr1A
468846671
468850032
3361
False
6209.000000
6209
100.000000
1
3362
1
chr1A.!!$F2
3361
1
TraesCS1A01G274800
chr1D
370213193
370215495
2302
False
3548.000000
3548
94.653000
417
2699
1
chr1D.!!$F2
2282
2
TraesCS1A01G274800
chr1D
99803031
99803668
637
False
942.000000
942
93.574000
2735
3362
1
chr1D.!!$F1
627
3
TraesCS1A01G274800
chr1B
493314299
493316948
2649
False
1815.000000
3301
89.453000
275
2699
2
chr1B.!!$F1
2424
4
TraesCS1A01G274800
chr1B
655122100
655122710
610
True
545.000000
545
83.070000
2742
3362
1
chr1B.!!$R1
620
5
TraesCS1A01G274800
chr7A
183661015
183661651
636
False
935.000000
935
93.407000
2735
3362
1
chr7A.!!$F2
627
6
TraesCS1A01G274800
chr7A
611293833
611294400
567
True
264.000000
296
92.596667
1496
2280
3
chr7A.!!$R2
784
7
TraesCS1A01G274800
chr7D
610709963
610710600
637
False
926.000000
926
93.103000
2735
3362
1
chr7D.!!$F1
627
8
TraesCS1A01G274800
chr5B
699407288
699407925
637
True
926.000000
926
93.103000
2735
3362
1
chr5B.!!$R1
627
9
TraesCS1A01G274800
chr3D
306013953
306014590
637
True
926.000000
926
93.103000
2735
3362
1
chr3D.!!$R1
627
10
TraesCS1A01G274800
chr2D
638774779
638775416
637
False
920.000000
920
92.947000
2735
3362
1
chr2D.!!$F1
627
11
TraesCS1A01G274800
chr2D
646037694
646038331
637
False
915.000000
915
92.790000
2735
3362
1
chr2D.!!$F2
627
12
TraesCS1A01G274800
chr5D
287782411
287783048
637
True
915.000000
915
92.790000
2735
3362
1
chr5D.!!$R1
627
13
TraesCS1A01G274800
chr4D
505811637
505812274
637
False
909.000000
909
92.633000
2735
3362
1
chr4D.!!$F1
627
14
TraesCS1A01G274800
chr2A
103096479
103097046
567
True
275.666667
292
93.901000
1496
2280
3
chr2A.!!$R1
784
15
TraesCS1A01G274800
chr2A
24418970
24419490
520
False
234.333333
268
93.544667
1490
2273
3
chr2A.!!$F2
783
16
TraesCS1A01G274800
chr3A
717886215
717886783
568
False
271.333333
296
93.335667
1490
2273
3
chr3A.!!$F1
783
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
28
29
0.023103
GACGACGACGACGACTACTC
59.977
60.0
25.15
8.87
42.66
2.59
F
766
1031
0.107214
TTGGCATCTTCGTCCCCATC
60.107
55.0
0.00
0.00
0.00
3.51
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1788
2055
2.813474
TCGGCGATTGCGGTCTTG
60.813
61.111
4.99
0.0
44.10
3.02
R
2538
2805
0.177141
TTAGGGTCGCATGTACAGGC
59.823
55.000
22.10
22.1
34.34
4.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
26
27
4.615378
GACGACGACGACGACTAC
57.385
61.111
25.15
10.08
42.66
2.73
27
28
2.066000
GACGACGACGACGACTACT
58.934
57.895
25.15
3.08
42.66
2.57
28
29
0.023103
GACGACGACGACGACTACTC
59.977
60.000
25.15
8.87
42.66
2.59
29
30
1.343147
CGACGACGACGACTACTCC
59.657
63.158
15.32
0.00
42.66
3.85
30
31
1.343147
GACGACGACGACTACTCCG
59.657
63.158
15.32
0.00
42.66
4.63
31
32
2.021106
CGACGACGACTACTCCGC
59.979
66.667
0.00
0.00
42.66
5.54
32
33
2.451167
CGACGACGACTACTCCGCT
61.451
63.158
0.00
0.00
42.66
5.52
33
34
1.792941
GACGACGACTACTCCGCTT
59.207
57.895
0.00
0.00
0.00
4.68
34
35
0.167689
GACGACGACTACTCCGCTTT
59.832
55.000
0.00
0.00
0.00
3.51
35
36
0.595095
ACGACGACTACTCCGCTTTT
59.405
50.000
0.00
0.00
0.00
2.27
36
37
1.806542
ACGACGACTACTCCGCTTTTA
59.193
47.619
0.00
0.00
0.00
1.52
37
38
2.159599
ACGACGACTACTCCGCTTTTAG
60.160
50.000
0.00
0.00
0.00
1.85
38
39
2.183636
GACGACTACTCCGCTTTTAGC
58.816
52.381
0.00
0.00
38.02
3.09
39
40
1.135170
ACGACTACTCCGCTTTTAGCC
60.135
52.381
0.00
0.00
38.18
3.93
40
41
1.135199
CGACTACTCCGCTTTTAGCCA
60.135
52.381
0.00
0.00
38.18
4.75
41
42
2.541556
GACTACTCCGCTTTTAGCCAG
58.458
52.381
0.00
0.00
38.18
4.85
42
43
1.900486
ACTACTCCGCTTTTAGCCAGT
59.100
47.619
0.00
0.00
38.18
4.00
43
44
2.302157
ACTACTCCGCTTTTAGCCAGTT
59.698
45.455
3.96
0.00
38.18
3.16
44
45
2.271944
ACTCCGCTTTTAGCCAGTTT
57.728
45.000
0.00
0.00
38.18
2.66
45
46
2.583143
ACTCCGCTTTTAGCCAGTTTT
58.417
42.857
0.00
0.00
38.18
2.43
46
47
2.956333
ACTCCGCTTTTAGCCAGTTTTT
59.044
40.909
0.00
0.00
38.18
1.94
107
108
9.549509
TTTAATGTAATATATGCCGAATTTCGC
57.450
29.630
13.26
9.32
38.82
4.70
108
109
5.539582
TGTAATATATGCCGAATTTCGCC
57.460
39.130
13.26
2.81
38.82
5.54
109
110
3.740044
AATATATGCCGAATTTCGCCG
57.260
42.857
13.26
2.21
38.82
6.46
110
111
2.442212
TATATGCCGAATTTCGCCGA
57.558
45.000
13.26
0.00
38.82
5.54
111
112
1.588674
ATATGCCGAATTTCGCCGAA
58.411
45.000
13.26
0.00
38.82
4.30
112
113
0.934496
TATGCCGAATTTCGCCGAAG
59.066
50.000
13.26
0.79
38.82
3.79
113
114
1.024579
ATGCCGAATTTCGCCGAAGT
61.025
50.000
13.26
0.00
38.82
3.01
114
115
1.231958
TGCCGAATTTCGCCGAAGTT
61.232
50.000
13.26
7.34
38.82
2.66
115
116
0.109919
GCCGAATTTCGCCGAAGTTT
60.110
50.000
13.26
3.14
38.82
2.66
116
117
1.602191
CCGAATTTCGCCGAAGTTTG
58.398
50.000
13.26
13.62
38.82
2.93
117
118
1.195900
CCGAATTTCGCCGAAGTTTGA
59.804
47.619
20.12
0.00
38.82
2.69
118
119
2.350007
CCGAATTTCGCCGAAGTTTGAA
60.350
45.455
20.12
0.00
38.82
2.69
119
120
2.650297
CGAATTTCGCCGAAGTTTGAAC
59.350
45.455
15.02
0.00
31.14
3.18
120
121
3.606153
CGAATTTCGCCGAAGTTTGAACT
60.606
43.478
15.02
0.00
35.01
3.01
121
122
5.075162
CGAATTTCGCCGAAGTTTGAACTT
61.075
41.667
15.02
8.76
41.70
2.66
122
123
6.508137
CGAATTTCGCCGAAGTTTGAACTTT
61.508
40.000
15.02
0.00
40.24
2.66
123
124
7.909078
CGAATTTCGCCGAAGTTTGAACTTTT
61.909
38.462
15.02
0.00
40.24
2.27
124
125
9.567774
CGAATTTCGCCGAAGTTTGAACTTTTC
62.568
40.741
15.02
6.87
40.24
2.29
157
158
2.026522
TTTTTGAACGCGACTGGGG
58.973
52.632
15.93
0.00
0.00
4.96
158
159
0.464013
TTTTTGAACGCGACTGGGGA
60.464
50.000
15.93
0.00
0.00
4.81
159
160
1.161563
TTTTGAACGCGACTGGGGAC
61.162
55.000
15.93
0.00
0.00
4.46
160
161
3.851845
TTGAACGCGACTGGGGACG
62.852
63.158
15.93
0.00
0.00
4.79
197
198
4.055227
GGGACCAATTCGCCCCCA
62.055
66.667
0.00
0.00
37.04
4.96
198
199
2.440247
GGACCAATTCGCCCCCAG
60.440
66.667
0.00
0.00
0.00
4.45
199
200
2.440247
GACCAATTCGCCCCCAGG
60.440
66.667
0.00
0.00
0.00
4.45
200
201
2.938798
ACCAATTCGCCCCCAGGA
60.939
61.111
0.00
0.00
33.47
3.86
201
202
2.440247
CCAATTCGCCCCCAGGAC
60.440
66.667
0.00
0.00
33.47
3.85
202
203
2.824041
CAATTCGCCCCCAGGACG
60.824
66.667
0.00
0.00
35.01
4.79
203
204
3.006728
AATTCGCCCCCAGGACGA
61.007
61.111
0.00
0.00
39.07
4.20
204
205
2.375345
AATTCGCCCCCAGGACGAT
61.375
57.895
0.00
0.00
40.01
3.73
205
206
1.921869
AATTCGCCCCCAGGACGATT
61.922
55.000
0.00
0.00
40.01
3.34
206
207
1.921869
ATTCGCCCCCAGGACGATTT
61.922
55.000
0.00
0.00
40.01
2.17
207
208
2.045340
CGCCCCCAGGACGATTTT
60.045
61.111
0.00
0.00
35.49
1.82
208
209
1.677633
CGCCCCCAGGACGATTTTT
60.678
57.895
0.00
0.00
35.49
1.94
222
223
3.124686
TTTTTGCACCGGCTCACC
58.875
55.556
0.00
0.00
41.91
4.02
223
224
2.494530
TTTTTGCACCGGCTCACCC
61.495
57.895
0.00
0.00
41.91
4.61
224
225
4.966787
TTTGCACCGGCTCACCCC
62.967
66.667
0.00
0.00
41.91
4.95
240
241
3.403936
CCCCAGGGAGCGATTTTAG
57.596
57.895
7.25
0.00
37.50
1.85
241
242
0.179018
CCCCAGGGAGCGATTTTAGG
60.179
60.000
7.25
0.00
37.50
2.69
242
243
0.819666
CCCAGGGAGCGATTTTAGGC
60.820
60.000
0.00
0.00
0.00
3.93
243
244
1.160329
CCAGGGAGCGATTTTAGGCG
61.160
60.000
0.00
0.00
0.00
5.52
244
245
0.462047
CAGGGAGCGATTTTAGGCGT
60.462
55.000
0.00
0.00
0.00
5.68
245
246
0.179081
AGGGAGCGATTTTAGGCGTC
60.179
55.000
0.00
0.00
0.00
5.19
246
247
0.179081
GGGAGCGATTTTAGGCGTCT
60.179
55.000
0.00
0.00
0.00
4.18
247
248
1.209998
GGAGCGATTTTAGGCGTCTC
58.790
55.000
0.00
0.00
33.28
3.36
248
249
1.202428
GGAGCGATTTTAGGCGTCTCT
60.202
52.381
0.00
0.00
33.97
3.10
249
250
1.855360
GAGCGATTTTAGGCGTCTCTG
59.145
52.381
0.00
0.00
32.21
3.35
250
251
0.931005
GCGATTTTAGGCGTCTCTGG
59.069
55.000
0.00
0.00
0.00
3.86
251
252
1.571919
CGATTTTAGGCGTCTCTGGG
58.428
55.000
0.00
0.00
0.00
4.45
252
253
1.806623
CGATTTTAGGCGTCTCTGGGG
60.807
57.143
0.00
0.00
0.00
4.96
253
254
0.546598
ATTTTAGGCGTCTCTGGGGG
59.453
55.000
0.00
0.00
0.00
5.40
273
274
3.805267
CAACGGCTGGAGATGCTC
58.195
61.111
0.00
0.00
0.00
4.26
297
298
2.246067
AGGATGAGAAGGCACTCCTAGA
59.754
50.000
8.72
0.00
43.40
2.43
301
302
2.023984
TGAGAAGGCACTCCTAGATGGA
60.024
50.000
8.72
0.00
43.40
3.41
321
322
3.370315
GGAGATCAACTCTGTTGCCATCT
60.370
47.826
11.74
11.74
44.37
2.90
410
412
6.974932
ATTGCAATAGCTATATTCTGACGG
57.025
37.500
11.02
0.00
42.74
4.79
411
413
4.245660
TGCAATAGCTATATTCTGACGGC
58.754
43.478
6.68
1.35
42.74
5.68
412
414
4.245660
GCAATAGCTATATTCTGACGGCA
58.754
43.478
6.68
0.00
37.91
5.69
413
415
4.690748
GCAATAGCTATATTCTGACGGCAA
59.309
41.667
6.68
0.00
37.91
4.52
414
416
5.389935
GCAATAGCTATATTCTGACGGCAAC
60.390
44.000
6.68
0.00
37.91
4.17
415
417
5.730296
ATAGCTATATTCTGACGGCAACT
57.270
39.130
3.84
0.00
0.00
3.16
416
418
6.835819
ATAGCTATATTCTGACGGCAACTA
57.164
37.500
3.84
0.00
0.00
2.24
417
419
5.730296
AGCTATATTCTGACGGCAACTAT
57.270
39.130
0.00
0.00
0.00
2.12
418
420
6.102897
AGCTATATTCTGACGGCAACTATT
57.897
37.500
0.00
0.00
0.00
1.73
419
421
6.525629
AGCTATATTCTGACGGCAACTATTT
58.474
36.000
0.00
0.00
0.00
1.40
420
422
6.992715
AGCTATATTCTGACGGCAACTATTTT
59.007
34.615
0.00
0.00
0.00
1.82
421
423
7.499232
AGCTATATTCTGACGGCAACTATTTTT
59.501
33.333
0.00
0.00
0.00
1.94
491
493
5.288015
CAGTTCAGCTCTCATCAACGATAT
58.712
41.667
0.00
0.00
0.00
1.63
494
496
4.864633
TCAGCTCTCATCAACGATATGAC
58.135
43.478
0.00
0.00
30.82
3.06
502
504
5.179533
TCATCAACGATATGACGGGAAAAA
58.820
37.500
0.00
0.00
37.61
1.94
636
642
5.618056
TCTGCTGATTTCTAGCACAAAAG
57.382
39.130
0.00
0.00
45.52
2.27
660
666
1.510492
TGGATGAAGGAGCATGGCTA
58.490
50.000
0.00
0.00
39.88
3.93
670
676
3.887716
AGGAGCATGGCTATCATTCAAAC
59.112
43.478
0.00
0.00
39.88
2.93
671
677
3.304257
GGAGCATGGCTATCATTCAAACG
60.304
47.826
0.00
0.00
39.88
3.60
672
678
3.544684
AGCATGGCTATCATTCAAACGA
58.455
40.909
0.00
0.00
36.99
3.85
673
679
3.947196
AGCATGGCTATCATTCAAACGAA
59.053
39.130
0.00
0.00
36.99
3.85
674
680
4.398988
AGCATGGCTATCATTCAAACGAAA
59.601
37.500
0.00
0.00
36.99
3.46
676
682
5.639757
CATGGCTATCATTCAAACGAAACA
58.360
37.500
0.00
0.00
32.92
2.83
677
683
5.697473
TGGCTATCATTCAAACGAAACAA
57.303
34.783
0.00
0.00
0.00
2.83
678
684
6.078202
TGGCTATCATTCAAACGAAACAAA
57.922
33.333
0.00
0.00
0.00
2.83
679
685
6.148948
TGGCTATCATTCAAACGAAACAAAG
58.851
36.000
0.00
0.00
0.00
2.77
681
687
6.305638
GGCTATCATTCAAACGAAACAAAGTC
59.694
38.462
0.00
0.00
0.00
3.01
683
689
7.269297
GCTATCATTCAAACGAAACAAAGTCTC
59.731
37.037
0.00
0.00
0.00
3.36
684
690
6.429791
TCATTCAAACGAAACAAAGTCTCA
57.570
33.333
0.00
0.00
0.00
3.27
689
695
6.616947
TCAAACGAAACAAAGTCTCAATGTT
58.383
32.000
0.00
0.00
38.85
2.71
691
697
6.436843
AACGAAACAAAGTCTCAATGTTCT
57.563
33.333
0.00
0.00
36.33
3.01
711
976
8.388319
TGTTCTCACATTTTAAACGAACAAAG
57.612
30.769
0.00
0.00
37.08
2.77
764
1029
1.208706
TATTGGCATCTTCGTCCCCA
58.791
50.000
0.00
0.00
0.00
4.96
765
1030
0.552848
ATTGGCATCTTCGTCCCCAT
59.447
50.000
0.00
0.00
0.00
4.00
766
1031
0.107214
TTGGCATCTTCGTCCCCATC
60.107
55.000
0.00
0.00
0.00
3.51
767
1032
1.227973
GGCATCTTCGTCCCCATCC
60.228
63.158
0.00
0.00
0.00
3.51
785
1050
3.842923
ATCCTCCACGCTCCGCTG
61.843
66.667
0.00
0.00
0.00
5.18
2052
2319
1.521457
TAAAGCAGCCATCGCCGAG
60.521
57.895
0.00
0.00
34.57
4.63
2355
2622
2.027325
CACCATCCATGTCATGCCG
58.973
57.895
7.35
0.00
0.00
5.69
2489
2756
3.181501
CGCAAGAAACCAAGTCAAAGTGA
60.182
43.478
0.00
0.00
43.02
3.41
2554
2821
0.748005
ATTGCCTGTACATGCGACCC
60.748
55.000
14.46
0.00
0.00
4.46
2699
2966
2.028484
ACACACGCGGTCGACATT
59.972
55.556
18.91
0.00
39.41
2.71
2700
2967
1.593209
ACACACGCGGTCGACATTT
60.593
52.632
18.91
0.00
39.41
2.32
2701
2968
1.155424
ACACACGCGGTCGACATTTT
61.155
50.000
18.91
0.00
39.41
1.82
2702
2969
0.041663
CACACGCGGTCGACATTTTT
60.042
50.000
18.91
0.00
39.41
1.94
2703
2970
0.233848
ACACGCGGTCGACATTTTTC
59.766
50.000
18.91
0.00
39.41
2.29
2704
2971
0.784250
CACGCGGTCGACATTTTTCG
60.784
55.000
18.91
11.44
40.53
3.46
2705
2972
0.940519
ACGCGGTCGACATTTTTCGA
60.941
50.000
18.91
0.00
45.62
3.71
2714
2981
5.126108
TCGACATTTTTCGATAAAGAGCG
57.874
39.130
7.13
9.26
43.01
5.03
2715
2982
4.860352
TCGACATTTTTCGATAAAGAGCGA
59.140
37.500
13.67
13.67
43.01
4.93
2716
2983
5.518847
TCGACATTTTTCGATAAAGAGCGAT
59.481
36.000
13.67
0.00
44.17
4.58
2717
2984
6.035650
TCGACATTTTTCGATAAAGAGCGATT
59.964
34.615
13.67
0.00
44.17
3.34
2718
2985
6.682863
CGACATTTTTCGATAAAGAGCGATTT
59.317
34.615
7.13
0.00
44.17
2.17
2719
2986
7.216317
CGACATTTTTCGATAAAGAGCGATTTT
59.784
33.333
7.13
0.00
44.17
1.82
2720
2987
9.485591
GACATTTTTCGATAAAGAGCGATTTTA
57.514
29.630
7.13
0.00
44.17
1.52
2728
2995
9.908152
TCGATAAAGAGCGATTTTATTATCTCA
57.092
29.630
0.00
0.00
38.87
3.27
2733
3000
8.586570
AAGAGCGATTTTATTATCTCAGAGTG
57.413
34.615
0.00
0.00
0.00
3.51
2880
3157
2.032071
GTCGAAGGTGGTGGTGGG
59.968
66.667
0.00
0.00
0.00
4.61
2910
3187
1.438814
GTTATGCTGCCACCCATGC
59.561
57.895
0.00
0.00
0.00
4.06
2913
3190
1.924145
TATGCTGCCACCCATGCTGA
61.924
55.000
0.00
0.00
0.00
4.26
2934
3211
3.644861
AAAAACCTCCGTAGCCAGG
57.355
52.632
0.00
0.00
35.69
4.45
2965
3243
1.301423
GTACACACCGCCTTGAACAA
58.699
50.000
0.00
0.00
0.00
2.83
2972
3250
0.871722
CCGCCTTGAACAACGATTGA
59.128
50.000
0.00
0.00
0.00
2.57
2976
3254
2.867429
CCTTGAACAACGATTGATGCC
58.133
47.619
0.00
0.00
0.00
4.40
2993
3271
1.498865
GCCCCGATCGTTGTAGCATG
61.499
60.000
15.09
0.00
0.00
4.06
2994
3272
0.104120
CCCCGATCGTTGTAGCATGA
59.896
55.000
15.09
0.00
0.00
3.07
3112
3391
2.277084
CCAAATTAAGGCGTACGCTCT
58.723
47.619
36.24
27.94
41.60
4.09
3124
3403
3.489738
GCGTACGCTCTCACCCTTATAAA
60.490
47.826
31.95
0.00
38.26
1.40
3196
3475
4.261801
GCAACACTTATGGGCGGATATAT
58.738
43.478
0.00
0.00
0.00
0.86
3289
3568
4.443063
TGTCTCGTCATGAGTACAAAAACG
59.557
41.667
0.00
0.00
45.46
3.60
3331
3610
3.335534
GCGTCGTGCGAGGTTGTT
61.336
61.111
14.30
0.00
44.77
2.83
3343
3622
4.174762
GCGAGGTTGTTTTTGGTTAACAA
58.825
39.130
8.10
0.00
41.69
2.83
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
4.395583
GTCGTCGTCGTCCGGCTT
62.396
66.667
0.00
0.00
39.61
4.35
3
4
4.783841
GTCGTCGTCGTCGTCCGG
62.784
72.222
11.41
0.00
38.33
5.14
6
7
1.665544
TAGTCGTCGTCGTCGTCGTC
61.666
60.000
18.44
14.10
45.27
4.20
7
8
1.729484
TAGTCGTCGTCGTCGTCGT
60.729
57.895
18.44
5.97
45.27
4.34
8
9
1.294798
GTAGTCGTCGTCGTCGTCG
60.295
63.158
14.18
14.18
46.06
5.12
9
10
0.023103
GAGTAGTCGTCGTCGTCGTC
59.977
60.000
11.41
6.41
38.33
4.20
10
11
1.347817
GGAGTAGTCGTCGTCGTCGT
61.348
60.000
11.41
0.00
38.33
4.34
11
12
1.343147
GGAGTAGTCGTCGTCGTCG
59.657
63.158
5.50
5.50
38.33
5.12
12
13
1.343147
CGGAGTAGTCGTCGTCGTC
59.657
63.158
1.33
0.00
38.33
4.20
13
14
2.734673
GCGGAGTAGTCGTCGTCGT
61.735
63.158
1.33
0.00
38.33
4.34
14
15
1.964290
AAGCGGAGTAGTCGTCGTCG
61.964
60.000
0.00
0.00
38.55
5.12
15
16
0.167689
AAAGCGGAGTAGTCGTCGTC
59.832
55.000
0.00
0.00
0.00
4.20
16
17
0.595095
AAAAGCGGAGTAGTCGTCGT
59.405
50.000
0.00
0.00
0.00
4.34
17
18
2.438583
CTAAAAGCGGAGTAGTCGTCG
58.561
52.381
0.00
0.00
0.00
5.12
18
19
2.183636
GCTAAAAGCGGAGTAGTCGTC
58.816
52.381
0.00
0.00
0.00
4.20
19
20
1.135170
GGCTAAAAGCGGAGTAGTCGT
60.135
52.381
0.00
0.00
43.62
4.34
20
21
1.135199
TGGCTAAAAGCGGAGTAGTCG
60.135
52.381
0.00
0.00
43.62
4.18
21
22
2.094130
ACTGGCTAAAAGCGGAGTAGTC
60.094
50.000
1.55
0.00
43.62
2.59
22
23
1.900486
ACTGGCTAAAAGCGGAGTAGT
59.100
47.619
1.55
0.00
43.62
2.73
23
24
2.674796
ACTGGCTAAAAGCGGAGTAG
57.325
50.000
1.55
0.00
43.62
2.57
24
25
3.412237
AAACTGGCTAAAAGCGGAGTA
57.588
42.857
3.48
0.00
43.62
2.59
25
26
2.271944
AAACTGGCTAAAAGCGGAGT
57.728
45.000
0.00
0.00
43.62
3.85
26
27
3.643159
AAAAACTGGCTAAAAGCGGAG
57.357
42.857
0.00
0.00
43.62
4.63
81
82
9.549509
GCGAAATTCGGCATATATTACATTAAA
57.450
29.630
17.49
0.00
40.84
1.52
97
98
1.195900
TCAAACTTCGGCGAAATTCGG
59.804
47.619
23.81
15.14
40.84
4.30
98
99
2.587612
TCAAACTTCGGCGAAATTCG
57.412
45.000
23.81
9.82
43.89
3.34
99
100
3.885358
AGTTCAAACTTCGGCGAAATTC
58.115
40.909
23.81
7.90
35.21
2.17
100
101
3.982576
AGTTCAAACTTCGGCGAAATT
57.017
38.095
23.81
17.62
35.21
1.82
101
102
3.982576
AAGTTCAAACTTCGGCGAAAT
57.017
38.095
23.81
11.46
45.65
2.17
139
140
0.464013
TCCCCAGTCGCGTTCAAAAA
60.464
50.000
5.77
0.00
0.00
1.94
140
141
1.146485
TCCCCAGTCGCGTTCAAAA
59.854
52.632
5.77
0.00
0.00
2.44
141
142
1.595929
GTCCCCAGTCGCGTTCAAA
60.596
57.895
5.77
0.00
0.00
2.69
142
143
2.029964
GTCCCCAGTCGCGTTCAA
59.970
61.111
5.77
0.00
0.00
2.69
143
144
4.351938
CGTCCCCAGTCGCGTTCA
62.352
66.667
5.77
0.00
0.00
3.18
172
173
4.759205
AATTGGTCCCCAGCCGCC
62.759
66.667
0.00
0.00
33.81
6.13
173
174
3.140814
GAATTGGTCCCCAGCCGC
61.141
66.667
0.00
0.00
33.81
6.53
174
175
2.824041
CGAATTGGTCCCCAGCCG
60.824
66.667
0.00
0.00
33.81
5.52
175
176
3.140814
GCGAATTGGTCCCCAGCC
61.141
66.667
0.00
0.00
33.81
4.85
176
177
3.140814
GGCGAATTGGTCCCCAGC
61.141
66.667
0.00
0.00
33.81
4.85
177
178
2.440247
GGGCGAATTGGTCCCCAG
60.440
66.667
0.00
0.00
36.95
4.45
181
182
2.440247
CTGGGGGCGAATTGGTCC
60.440
66.667
1.85
1.85
0.00
4.46
182
183
2.440247
CCTGGGGGCGAATTGGTC
60.440
66.667
0.00
0.00
0.00
4.02
183
184
2.938798
TCCTGGGGGCGAATTGGT
60.939
61.111
0.00
0.00
0.00
3.67
184
185
2.440247
GTCCTGGGGGCGAATTGG
60.440
66.667
0.00
0.00
0.00
3.16
185
186
2.608970
ATCGTCCTGGGGGCGAATTG
62.609
60.000
16.95
0.00
41.55
2.32
186
187
1.921869
AATCGTCCTGGGGGCGAATT
61.922
55.000
16.95
9.25
41.55
2.17
187
188
1.921869
AAATCGTCCTGGGGGCGAAT
61.922
55.000
16.95
6.34
41.55
3.34
188
189
2.132089
AAAATCGTCCTGGGGGCGAA
62.132
55.000
16.95
1.71
41.55
4.70
189
190
2.132089
AAAAATCGTCCTGGGGGCGA
62.132
55.000
15.46
15.46
42.07
5.54
190
191
1.677633
AAAAATCGTCCTGGGGGCG
60.678
57.895
4.04
4.04
34.90
6.13
191
192
4.434483
AAAAATCGTCCTGGGGGC
57.566
55.556
0.00
0.00
0.00
5.80
205
206
2.494530
GGGTGAGCCGGTGCAAAAA
61.495
57.895
1.90
0.00
41.13
1.94
206
207
2.909965
GGGTGAGCCGGTGCAAAA
60.910
61.111
1.90
0.00
41.13
2.44
207
208
4.966787
GGGGTGAGCCGGTGCAAA
62.967
66.667
1.90
0.00
41.13
3.68
218
219
3.943137
AATCGCTCCCTGGGGGTGA
62.943
63.158
30.00
30.00
44.74
4.02
219
220
2.499303
AAAATCGCTCCCTGGGGGTG
62.499
60.000
20.53
20.53
44.74
4.61
220
221
0.917333
TAAAATCGCTCCCTGGGGGT
60.917
55.000
15.57
0.00
44.74
4.95
221
222
0.179018
CTAAAATCGCTCCCTGGGGG
60.179
60.000
14.00
11.51
46.11
5.40
222
223
0.179018
CCTAAAATCGCTCCCTGGGG
60.179
60.000
14.00
4.79
0.00
4.96
223
224
0.819666
GCCTAAAATCGCTCCCTGGG
60.820
60.000
6.33
6.33
0.00
4.45
224
225
1.160329
CGCCTAAAATCGCTCCCTGG
61.160
60.000
0.00
0.00
0.00
4.45
225
226
0.462047
ACGCCTAAAATCGCTCCCTG
60.462
55.000
0.00
0.00
0.00
4.45
226
227
0.179081
GACGCCTAAAATCGCTCCCT
60.179
55.000
0.00
0.00
0.00
4.20
227
228
0.179081
AGACGCCTAAAATCGCTCCC
60.179
55.000
0.00
0.00
0.00
4.30
228
229
1.202428
AGAGACGCCTAAAATCGCTCC
60.202
52.381
0.00
0.00
33.02
4.70
229
230
1.855360
CAGAGACGCCTAAAATCGCTC
59.145
52.381
0.00
0.00
32.87
5.03
230
231
1.471676
CCAGAGACGCCTAAAATCGCT
60.472
52.381
0.00
0.00
0.00
4.93
231
232
0.931005
CCAGAGACGCCTAAAATCGC
59.069
55.000
0.00
0.00
0.00
4.58
232
233
1.571919
CCCAGAGACGCCTAAAATCG
58.428
55.000
0.00
0.00
0.00
3.34
233
234
1.475213
CCCCCAGAGACGCCTAAAATC
60.475
57.143
0.00
0.00
0.00
2.17
234
235
0.546598
CCCCCAGAGACGCCTAAAAT
59.453
55.000
0.00
0.00
0.00
1.82
235
236
1.988015
CCCCCAGAGACGCCTAAAA
59.012
57.895
0.00
0.00
0.00
1.52
236
237
3.721868
CCCCCAGAGACGCCTAAA
58.278
61.111
0.00
0.00
0.00
1.85
256
257
3.805267
GAGCATCTCCAGCCGTTG
58.195
61.111
0.00
0.00
0.00
4.10
267
268
3.070734
TGCCTTCTCATCCTTAGAGCATC
59.929
47.826
0.00
0.00
33.15
3.91
268
269
3.044156
TGCCTTCTCATCCTTAGAGCAT
58.956
45.455
0.00
0.00
33.15
3.79
269
270
2.169352
GTGCCTTCTCATCCTTAGAGCA
59.831
50.000
0.00
0.00
33.15
4.26
270
271
2.433970
AGTGCCTTCTCATCCTTAGAGC
59.566
50.000
0.00
0.00
33.15
4.09
271
272
3.069443
GGAGTGCCTTCTCATCCTTAGAG
59.931
52.174
0.00
0.00
36.30
2.43
272
273
3.034635
GGAGTGCCTTCTCATCCTTAGA
58.965
50.000
0.00
0.00
36.30
2.10
273
274
3.037549
AGGAGTGCCTTCTCATCCTTAG
58.962
50.000
0.00
0.00
43.90
2.18
297
298
2.306805
TGGCAACAGAGTTGATCTCCAT
59.693
45.455
13.58
0.00
46.17
3.41
419
421
2.750166
TGCCTCAAGTTGTCGTCAAAAA
59.250
40.909
2.11
0.00
35.20
1.94
420
422
2.360844
TGCCTCAAGTTGTCGTCAAAA
58.639
42.857
2.11
0.00
35.20
2.44
421
423
2.031258
TGCCTCAAGTTGTCGTCAAA
57.969
45.000
2.11
0.00
35.20
2.69
424
426
1.795768
TCATGCCTCAAGTTGTCGTC
58.204
50.000
2.11
0.00
0.00
4.20
449
451
9.334693
CTGAACTGCAAATTGTATCTTAACTTC
57.665
33.333
0.00
0.00
0.00
3.01
536
541
9.657419
ATGATTTCAACAAAACAGAGAACTTTT
57.343
25.926
0.00
0.00
28.72
2.27
636
642
3.492137
GCCATGCTCCTTCATCCAATTTC
60.492
47.826
0.00
0.00
0.00
2.17
660
666
7.026631
TGAGACTTTGTTTCGTTTGAATGAT
57.973
32.000
0.00
0.00
33.20
2.45
670
676
5.904080
GTGAGAACATTGAGACTTTGTTTCG
59.096
40.000
0.00
0.00
33.92
3.46
671
677
6.785191
TGTGAGAACATTGAGACTTTGTTTC
58.215
36.000
0.00
0.00
33.92
2.78
672
678
6.757897
TGTGAGAACATTGAGACTTTGTTT
57.242
33.333
0.00
0.00
33.92
2.83
673
679
6.949352
ATGTGAGAACATTGAGACTTTGTT
57.051
33.333
0.00
0.00
36.34
2.83
674
680
6.949352
AATGTGAGAACATTGAGACTTTGT
57.051
33.333
3.39
0.00
38.72
2.83
677
683
9.736023
GTTTAAAATGTGAGAACATTGAGACTT
57.264
29.630
4.94
0.00
39.92
3.01
678
684
8.070171
CGTTTAAAATGTGAGAACATTGAGACT
58.930
33.333
4.94
0.00
39.92
3.24
679
685
8.067784
TCGTTTAAAATGTGAGAACATTGAGAC
58.932
33.333
4.94
2.44
39.92
3.36
681
687
8.682016
GTTCGTTTAAAATGTGAGAACATTGAG
58.318
33.333
4.94
0.00
39.92
3.02
683
689
8.334016
TGTTCGTTTAAAATGTGAGAACATTG
57.666
30.769
4.94
0.00
40.68
2.82
684
690
8.918961
TTGTTCGTTTAAAATGTGAGAACATT
57.081
26.923
8.60
0.00
43.59
2.71
689
695
5.974751
GGCTTTGTTCGTTTAAAATGTGAGA
59.025
36.000
0.00
0.00
0.00
3.27
691
697
5.044558
GGGCTTTGTTCGTTTAAAATGTGA
58.955
37.500
0.00
0.00
0.00
3.58
764
1029
2.502492
CGGAGCGTGGAGGATGGAT
61.502
63.158
0.00
0.00
0.00
3.41
765
1030
3.147595
CGGAGCGTGGAGGATGGA
61.148
66.667
0.00
0.00
0.00
3.41
806
1071
1.152881
CCCATTGGTAGAGCAGCCC
60.153
63.158
1.20
0.00
0.00
5.19
912
1178
1.630148
CGAGGCCTTAAGAACGAGTG
58.370
55.000
6.77
0.00
0.00
3.51
957
1223
4.459089
GAGCTGCTGGGGACGGAC
62.459
72.222
7.01
0.00
39.98
4.79
959
1225
4.463879
CTGAGCTGCTGGGGACGG
62.464
72.222
7.01
0.00
40.79
4.79
1056
1323
4.899239
GAGGCGGCCATCACGAGG
62.899
72.222
23.09
0.00
0.00
4.63
1590
1857
4.778143
ACGGCCATCTTGACCCGC
62.778
66.667
2.24
0.00
44.29
6.13
1788
2055
2.813474
TCGGCGATTGCGGTCTTG
60.813
61.111
4.99
0.00
44.10
3.02
1911
2178
4.175489
CGGACCATCGACGCTCGT
62.175
66.667
0.00
0.00
41.35
4.18
2205
2472
2.856000
ACCAGCAGCTTCCCCACT
60.856
61.111
0.00
0.00
0.00
4.00
2355
2622
6.090358
TCGACAAATTTACTTGCTGCTAGTAC
59.910
38.462
20.65
8.90
0.00
2.73
2489
2756
6.100404
TCCAAACAAAAATGCTATCTTGCT
57.900
33.333
0.00
0.00
0.00
3.91
2538
2805
0.177141
TTAGGGTCGCATGTACAGGC
59.823
55.000
22.10
22.10
34.34
4.85
2554
2821
2.858344
CTCCACTACGCGTCCAAATTAG
59.142
50.000
18.63
8.46
0.00
1.73
2702
2969
9.908152
TGAGATAATAAAATCGCTCTTTATCGA
57.092
29.630
0.00
0.00
39.17
3.59
2707
2974
9.039870
CACTCTGAGATAATAAAATCGCTCTTT
57.960
33.333
12.44
0.00
0.00
2.52
2708
2975
8.200792
ACACTCTGAGATAATAAAATCGCTCTT
58.799
33.333
12.44
0.00
0.00
2.85
2709
2976
7.721402
ACACTCTGAGATAATAAAATCGCTCT
58.279
34.615
12.44
0.00
0.00
4.09
2710
2977
7.938563
ACACTCTGAGATAATAAAATCGCTC
57.061
36.000
12.44
0.00
0.00
5.03
2711
2978
8.414003
TGTACACTCTGAGATAATAAAATCGCT
58.586
33.333
12.44
0.00
0.00
4.93
2712
2979
8.575565
TGTACACTCTGAGATAATAAAATCGC
57.424
34.615
12.44
0.00
0.00
4.58
2723
2990
9.376075
CTCATAATGTTTTGTACACTCTGAGAT
57.624
33.333
12.44
1.55
40.19
2.75
2724
2991
8.367911
ACTCATAATGTTTTGTACACTCTGAGA
58.632
33.333
12.44
0.00
40.19
3.27
2725
2992
8.539770
ACTCATAATGTTTTGTACACTCTGAG
57.460
34.615
2.45
2.45
40.19
3.35
2726
2993
9.990360
TTACTCATAATGTTTTGTACACTCTGA
57.010
29.630
0.00
0.00
40.19
3.27
2728
2995
9.772973
TGTTACTCATAATGTTTTGTACACTCT
57.227
29.630
0.00
0.00
40.19
3.24
2731
2998
9.769093
GGATGTTACTCATAATGTTTTGTACAC
57.231
33.333
0.00
0.00
36.87
2.90
2732
2999
8.661257
CGGATGTTACTCATAATGTTTTGTACA
58.339
33.333
0.00
0.00
37.80
2.90
2733
3000
8.120465
CCGGATGTTACTCATAATGTTTTGTAC
58.880
37.037
0.00
0.00
36.83
2.90
2778
3048
5.592282
TGTCAGACTTTTGAATTTGGCTGTA
59.408
36.000
1.31
0.00
0.00
2.74
2880
3157
0.674534
AGCATAACCTCCGGATCGAC
59.325
55.000
3.57
0.00
0.00
4.20
2933
3210
4.382320
TGTACGCGGTTGGAGCCC
62.382
66.667
12.47
0.00
0.00
5.19
2934
3211
3.116531
GTGTACGCGGTTGGAGCC
61.117
66.667
12.47
0.00
0.00
4.70
2965
3243
1.300931
CGATCGGGGCATCAATCGT
60.301
57.895
7.38
0.00
36.99
3.73
2972
3250
1.227556
GCTACAACGATCGGGGCAT
60.228
57.895
20.98
2.51
0.00
4.40
2976
3254
1.593006
GTTCATGCTACAACGATCGGG
59.407
52.381
20.98
13.58
0.00
5.14
2993
3271
2.030946
GCACTCGCTTCATATGTGGTTC
59.969
50.000
1.90
0.00
34.30
3.62
2994
3272
2.009774
GCACTCGCTTCATATGTGGTT
58.990
47.619
1.90
0.00
34.30
3.67
3018
3296
3.334691
CTCTGCAGGTTATTTTCCGTCA
58.665
45.455
15.13
0.00
0.00
4.35
3019
3297
2.678336
CCTCTGCAGGTTATTTTCCGTC
59.322
50.000
15.13
0.00
34.60
4.79
3112
3391
9.841295
ATAGATTTAAAGCGTTTATAAGGGTGA
57.159
29.630
0.00
0.00
0.00
4.02
3124
3403
7.281549
ACGGTATTCCAAATAGATTTAAAGCGT
59.718
33.333
0.00
0.00
0.00
5.07
3196
3475
8.579006
GGTCAATCATCCAAATAGCATCAAATA
58.421
33.333
0.00
0.00
0.00
1.40
3243
3522
7.337938
ACAATCAAACACCTCTTTTTCCAATT
58.662
30.769
0.00
0.00
0.00
2.32
3289
3568
1.066071
GGCCAGGGAGTAAGAAGTGTC
60.066
57.143
0.00
0.00
0.00
3.67
3331
3610
6.376581
TCGTAAGGGAGTTTTGTTAACCAAAA
59.623
34.615
6.44
8.59
43.58
2.44
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.