Multiple sequence alignment - TraesCS1A01G274600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G274600 chr1A 100.000 3638 0 0 1 3638 468824783 468821146 0.000000e+00 6719.0
1 TraesCS1A01G274600 chr1B 92.627 2075 103 18 626 2661 493241064 493239001 0.000000e+00 2939.0
2 TraesCS1A01G274600 chr1B 84.346 428 54 4 1 415 493242448 493242021 1.220000e-109 407.0
3 TraesCS1A01G274600 chr1B 87.097 217 24 3 413 628 493241801 493241588 3.630000e-60 243.0
4 TraesCS1A01G274600 chr1B 78.774 212 42 3 5 214 636315395 636315185 4.900000e-29 139.0
5 TraesCS1A01G274600 chr1D 88.431 631 50 14 3020 3634 370135737 370135114 0.000000e+00 739.0
6 TraesCS1A01G274600 chr1D 86.948 521 50 5 3 508 370137097 370136580 1.470000e-158 569.0
7 TraesCS1A01G274600 chr1D 80.814 172 33 0 20 191 199327615 199327444 6.340000e-28 135.0
8 TraesCS1A01G274600 chr1D 77.830 212 44 3 5 214 462073261 462073051 1.060000e-25 128.0
9 TraesCS1A01G274600 chr1D 79.104 134 28 0 2887 3020 59964253 59964120 3.870000e-15 93.5
10 TraesCS1A01G274600 chr7D 82.677 254 40 3 2767 3018 64180813 64181064 4.730000e-54 222.0
11 TraesCS1A01G274600 chr2D 82.283 254 37 6 2770 3019 590343554 590343305 2.850000e-51 213.0
12 TraesCS1A01G274600 chr3D 80.899 267 50 1 3 268 18431813 18432079 3.680000e-50 209.0
13 TraesCS1A01G274600 chr7A 77.011 261 56 4 1 259 490278088 490277830 2.930000e-31 147.0
14 TraesCS1A01G274600 chr4D 75.966 233 53 3 1 232 3614535 3614305 2.300000e-22 117.0
15 TraesCS1A01G274600 chr3B 93.220 59 4 0 1 59 252593902 252593844 1.800000e-13 87.9
16 TraesCS1A01G274600 chr5A 85.897 78 11 0 2 79 44304313 44304236 2.330000e-12 84.2
17 TraesCS1A01G274600 chr7B 78.814 118 20 5 2770 2885 387649186 387649072 1.400000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G274600 chr1A 468821146 468824783 3637 True 6719.000000 6719 100.000000 1 3638 1 chr1A.!!$R1 3637
1 TraesCS1A01G274600 chr1B 493239001 493242448 3447 True 1196.333333 2939 88.023333 1 2661 3 chr1B.!!$R2 2660
2 TraesCS1A01G274600 chr1D 370135114 370137097 1983 True 654.000000 739 87.689500 3 3634 2 chr1D.!!$R4 3631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1782 0.031585 TTCGTCGAACACCCTGTCTG 59.968 55.0 2.90 0.0 0.0 3.51 F
1323 2266 0.165944 CATTTCCGTCGACTGGTTGC 59.834 55.0 20.62 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 2797 0.030773 TCGCGTACATCTCCATCAGC 59.969 55.0 5.77 0.0 0.0 4.26 R
2970 3940 0.035820 AGCGCGGGAATAGGAAAACA 60.036 50.0 8.83 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.221840 GATGATGTGCCCTGACCGT 59.778 57.895 0.00 0.00 0.00 4.83
87 88 4.573900 CTGACAAGCTGAGAATACCAACT 58.426 43.478 0.00 0.00 0.00 3.16
101 102 5.939764 ATACCAACTGTTCTAGCAGATCA 57.060 39.130 4.57 0.00 39.62 2.92
103 104 4.511527 ACCAACTGTTCTAGCAGATCATG 58.488 43.478 4.57 0.00 39.62 3.07
112 113 2.124277 AGCAGATCATGTGTGTGCAT 57.876 45.000 19.24 7.16 36.57 3.96
113 114 2.443416 AGCAGATCATGTGTGTGCATT 58.557 42.857 19.24 3.53 36.57 3.56
139 140 0.103937 GCACGCTCTAGAATCAGCCT 59.896 55.000 0.00 0.00 31.37 4.58
142 143 1.035923 CGCTCTAGAATCAGCCTCCA 58.964 55.000 0.00 0.00 31.37 3.86
143 144 1.617850 CGCTCTAGAATCAGCCTCCAT 59.382 52.381 0.00 0.00 31.37 3.41
172 173 3.811702 CTCCCACCTTCAGGAGCA 58.188 61.111 0.00 0.00 43.11 4.26
196 197 0.540365 ACACATTCACCTTGCCAGGG 60.540 55.000 8.98 0.00 46.01 4.45
214 215 2.178521 CTTACTGCCGTCGTCGCT 59.821 61.111 0.00 0.00 35.54 4.93
231 232 1.500512 GCTACCACGACGCCAAACAA 61.501 55.000 0.00 0.00 0.00 2.83
232 233 1.153353 CTACCACGACGCCAAACAAT 58.847 50.000 0.00 0.00 0.00 2.71
237 238 1.212490 CGACGCCAAACAATGCCAT 59.788 52.632 0.00 0.00 0.00 4.40
262 263 2.202703 TACGCGCGTCCATCAAGTCA 62.203 55.000 41.35 15.51 0.00 3.41
278 279 2.233271 AGTCACATCTTGGCAAGTTGG 58.767 47.619 31.11 22.75 33.51 3.77
279 281 2.158623 AGTCACATCTTGGCAAGTTGGA 60.159 45.455 31.11 24.09 33.51 3.53
281 283 3.084039 TCACATCTTGGCAAGTTGGATC 58.916 45.455 31.11 0.00 33.51 3.36
295 297 8.470002 GGCAAGTTGGATCTTTTCTATGTTTAT 58.530 33.333 4.75 0.00 0.00 1.40
346 360 1.225855 GTTGTCATGTCGCACCTTGA 58.774 50.000 0.00 0.00 0.00 3.02
366 380 4.211125 TGACAAGTTGAAGCCATTTGGTA 58.789 39.130 10.54 0.00 37.57 3.25
372 386 4.016444 GTTGAAGCCATTTGGTATCCTCA 58.984 43.478 0.00 0.00 37.57 3.86
378 392 2.553028 CCATTTGGTATCCTCATCCCGG 60.553 54.545 0.00 0.00 0.00 5.73
409 423 3.706594 TGTAGGAAGATCATCCGCTTCTT 59.293 43.478 11.21 0.00 44.60 2.52
411 425 4.227864 AGGAAGATCATCCGCTTCTTTT 57.772 40.909 11.21 0.00 44.60 2.27
560 796 2.158325 ACCATTTGTCAGTCCATGGGTT 60.158 45.455 13.02 0.00 40.61 4.11
570 806 3.260380 CAGTCCATGGGTTTATTTTGCCA 59.740 43.478 13.02 0.00 0.00 4.92
578 814 7.609532 CCATGGGTTTATTTTGCCATTTTTCTA 59.390 33.333 2.85 0.00 0.00 2.10
579 815 7.971183 TGGGTTTATTTTGCCATTTTTCTAC 57.029 32.000 0.00 0.00 0.00 2.59
602 839 4.023739 ACTTCGTAGTGCAAAAACCAAC 57.976 40.909 0.00 0.00 31.99 3.77
603 840 3.181494 ACTTCGTAGTGCAAAAACCAACC 60.181 43.478 0.00 0.00 31.99 3.77
604 841 2.645802 TCGTAGTGCAAAAACCAACCT 58.354 42.857 0.00 0.00 0.00 3.50
608 845 4.736307 CGTAGTGCAAAAACCAACCTAAAC 59.264 41.667 0.00 0.00 0.00 2.01
612 849 6.176896 AGTGCAAAAACCAACCTAAACAATT 58.823 32.000 0.00 0.00 0.00 2.32
622 859 7.602753 ACCAACCTAAACAATTAGATGAAAGC 58.397 34.615 0.00 0.00 40.90 3.51
676 1439 2.958578 ATACCTGGCGGCCCAAATCG 62.959 60.000 17.97 0.00 41.58 3.34
687 1450 2.484947 GGCCCAAATCGTTACTCCTAGG 60.485 54.545 0.82 0.82 0.00 3.02
698 1461 5.590259 TCGTTACTCCTAGGTTATGTGGTAC 59.410 44.000 9.08 4.42 0.00 3.34
703 1466 6.496743 ACTCCTAGGTTATGTGGTACAAGTA 58.503 40.000 9.08 0.00 44.16 2.24
716 1479 8.693120 TGTGGTACAAGTAGATTATCCTAGAG 57.307 38.462 0.00 0.00 44.16 2.43
788 1571 8.847444 AAAAACTATGTTATCCTACGACTACG 57.153 34.615 0.00 0.00 45.75 3.51
789 1572 7.792374 AAACTATGTTATCCTACGACTACGA 57.208 36.000 0.00 0.00 42.66 3.43
790 1573 7.976135 AACTATGTTATCCTACGACTACGAT 57.024 36.000 0.00 0.00 42.66 3.73
813 1596 3.428532 ACGACCAAGCTTACTAGAGGAA 58.571 45.455 0.00 0.00 0.00 3.36
814 1597 3.193056 ACGACCAAGCTTACTAGAGGAAC 59.807 47.826 0.00 0.00 0.00 3.62
836 1619 1.327764 CGCTTAGATCCGCCAAACTTC 59.672 52.381 0.00 0.00 0.00 3.01
842 1625 2.159382 GATCCGCCAAACTTCCTTTCA 58.841 47.619 0.00 0.00 0.00 2.69
858 1641 8.109634 ACTTCCTTTCATTTGAGCTAAATCCTA 58.890 33.333 0.00 0.00 36.87 2.94
859 1642 8.877864 TTCCTTTCATTTGAGCTAAATCCTAA 57.122 30.769 0.00 0.00 36.87 2.69
869 1652 3.157881 GCTAAATCCTAAATCCCTGGGC 58.842 50.000 8.22 0.00 0.00 5.36
895 1686 5.124645 TGCCAAAAACAAATCAAATCTGCT 58.875 33.333 0.00 0.00 0.00 4.24
954 1745 2.110213 GCTCACCCGTCACCAACA 59.890 61.111 0.00 0.00 0.00 3.33
990 1781 0.966920 ATTCGTCGAACACCCTGTCT 59.033 50.000 10.39 0.00 0.00 3.41
991 1782 0.031585 TTCGTCGAACACCCTGTCTG 59.968 55.000 2.90 0.00 0.00 3.51
994 1785 2.137528 TCGAACACCCTGTCTGCCA 61.138 57.895 0.00 0.00 0.00 4.92
996 1787 1.754745 GAACACCCTGTCTGCCAGA 59.245 57.895 0.00 0.00 44.49 3.86
1000 1791 3.324930 CCCTGTCTGCCAGAGCCA 61.325 66.667 0.00 0.00 44.49 4.75
1001 1792 2.677289 CCCTGTCTGCCAGAGCCAT 61.677 63.158 0.00 0.00 44.49 4.40
1003 1794 1.451567 CTGTCTGCCAGAGCCATGG 60.452 63.158 7.63 7.63 44.49 3.66
1138 2081 0.319040 CTACATCGCCACCCAGATCG 60.319 60.000 0.00 0.00 0.00 3.69
1199 2142 4.947147 GGTGTTCGCCCAGGTGCA 62.947 66.667 0.00 0.00 0.00 4.57
1263 2206 2.669569 CAGAACCACCTGCACCGG 60.670 66.667 0.00 0.00 0.00 5.28
1319 2262 2.106683 GCCCATTTCCGTCGACTGG 61.107 63.158 14.70 16.06 0.00 4.00
1323 2266 0.165944 CATTTCCGTCGACTGGTTGC 59.834 55.000 20.62 0.00 0.00 4.17
1324 2267 0.953960 ATTTCCGTCGACTGGTTGCC 60.954 55.000 20.62 0.00 0.00 4.52
1551 2494 1.227999 ATGCGGTCACTTGGAACACG 61.228 55.000 0.00 0.00 39.29 4.49
1566 2509 0.872881 ACACGGTTATATCGGCGCAC 60.873 55.000 10.83 0.00 0.00 5.34
1599 2542 1.884926 GATGAGGAAAGCGAGGGCG 60.885 63.158 0.00 0.00 46.35 6.13
1600 2543 2.579684 GATGAGGAAAGCGAGGGCGT 62.580 60.000 0.00 0.00 46.35 5.68
1617 2560 2.017049 GCGTTATTCAACTCCATGCCT 58.983 47.619 0.00 0.00 32.09 4.75
1626 2569 0.908198 ACTCCATGCCTGAGAAGACC 59.092 55.000 4.68 0.00 33.95 3.85
1645 2588 1.522668 CATCGTTTCCTGGACTGCAA 58.477 50.000 0.00 0.00 0.00 4.08
1680 2623 4.821589 GCAGCGGGGGACTTCTCG 62.822 72.222 0.00 0.00 0.00 4.04
1703 2646 4.712425 CGTCGAGGCGTTCCGGTT 62.712 66.667 0.00 0.00 37.47 4.44
1704 2647 3.110178 GTCGAGGCGTTCCGGTTG 61.110 66.667 0.00 0.00 37.47 3.77
1725 2668 3.056393 TGATGCAAATGGAAGGCTTTGAG 60.056 43.478 0.00 0.00 34.93 3.02
1737 2680 2.355363 TTTGAGCCGGACGACGTG 60.355 61.111 5.05 0.00 42.24 4.49
1872 2815 1.271446 CGCTGATGGAGATGTACGCG 61.271 60.000 3.53 3.53 0.00 6.01
1874 2817 1.536072 GCTGATGGAGATGTACGCGAA 60.536 52.381 15.93 0.00 0.00 4.70
2101 3044 3.003173 TCCTGGACGAAGGGCTGG 61.003 66.667 0.00 0.00 37.96 4.85
2124 3067 0.389948 ACTTCGACCGCATGAAGGAC 60.390 55.000 13.65 7.24 44.59 3.85
2126 3069 3.554692 CGACCGCATGAAGGACGC 61.555 66.667 16.05 5.28 39.62 5.19
2164 3107 1.153568 GTCGAGCACTATGGCTGCA 60.154 57.895 0.50 0.00 45.99 4.41
2208 3151 0.093705 GACAAATCGTGCGTGCTCTC 59.906 55.000 0.00 0.00 0.00 3.20
2218 3161 2.537625 GTGCGTGCTCTCAATCTCATAC 59.462 50.000 0.00 0.00 0.00 2.39
2220 3163 2.793790 GCGTGCTCTCAATCTCATACTG 59.206 50.000 0.00 0.00 0.00 2.74
2346 3289 1.733399 GCTGGAACCAGACGACGTC 60.733 63.158 22.96 20.25 46.30 4.34
2364 3307 0.108186 TCGGCAACCTAGTCATGCTG 60.108 55.000 12.04 12.04 45.61 4.41
2505 3472 1.137825 GGAGTTCGTCGCTGGAGAG 59.862 63.158 0.00 0.00 0.00 3.20
2530 3497 2.892852 CTGAAACCTGAATTTGGAGGCA 59.107 45.455 5.58 0.79 31.90 4.75
2545 3512 1.956043 GGCATTGTTGGCGTTCTGA 59.044 52.632 0.00 0.00 38.79 3.27
2571 3538 3.052082 GCCTCGCAGCTTGCAGAA 61.052 61.111 8.52 0.00 45.36 3.02
2585 3552 3.895232 TGCAGAAGAGGGTGTAGATTC 57.105 47.619 0.00 0.00 0.00 2.52
2593 3560 4.227197 AGAGGGTGTAGATTCCATCGATT 58.773 43.478 0.00 0.00 39.17 3.34
2597 3564 4.039245 GGGTGTAGATTCCATCGATTCAGA 59.961 45.833 0.00 0.00 0.00 3.27
2612 3579 5.858049 TCGATTCAGATTGTTTTGTTGATGC 59.142 36.000 0.00 0.00 0.00 3.91
2613 3580 5.630264 CGATTCAGATTGTTTTGTTGATGCA 59.370 36.000 0.00 0.00 0.00 3.96
2622 3589 8.836268 ATTGTTTTGTTGATGCAAATATGTCT 57.164 26.923 0.00 0.00 38.05 3.41
2623 3590 7.640616 TGTTTTGTTGATGCAAATATGTCTG 57.359 32.000 0.00 0.00 38.05 3.51
2625 3592 5.648178 TTGTTGATGCAAATATGTCTGCT 57.352 34.783 0.00 0.00 39.38 4.24
2630 3597 6.947644 TGATGCAAATATGTCTGCTATTGT 57.052 33.333 0.00 0.00 39.38 2.71
2633 3603 6.513806 TGCAAATATGTCTGCTATTGTGTT 57.486 33.333 6.34 0.00 39.38 3.32
2650 3620 2.294233 GTGTTCTGACCATTGCACATGT 59.706 45.455 0.00 0.00 0.00 3.21
2654 3624 2.293955 TCTGACCATTGCACATGTGTTG 59.706 45.455 26.01 19.52 0.00 3.33
2661 3631 3.582714 TTGCACATGTGTTGTTGTGAA 57.417 38.095 26.01 5.00 44.74 3.18
2669 3639 6.916932 CACATGTGTTGTTGTGAATGTGATTA 59.083 34.615 18.03 0.00 44.81 1.75
2671 3641 5.518812 TGTGTTGTTGTGAATGTGATTAGC 58.481 37.500 0.00 0.00 0.00 3.09
2672 3642 5.067023 TGTGTTGTTGTGAATGTGATTAGCA 59.933 36.000 0.00 0.00 0.00 3.49
2673 3643 5.976534 GTGTTGTTGTGAATGTGATTAGCAA 59.023 36.000 0.00 0.00 0.00 3.91
2674 3644 6.475076 GTGTTGTTGTGAATGTGATTAGCAAA 59.525 34.615 0.00 0.00 0.00 3.68
2675 3645 6.696583 TGTTGTTGTGAATGTGATTAGCAAAG 59.303 34.615 0.00 0.00 0.00 2.77
2677 3647 6.207928 TGTTGTGAATGTGATTAGCAAAGTG 58.792 36.000 0.00 0.00 0.00 3.16
2678 3648 6.039159 TGTTGTGAATGTGATTAGCAAAGTGA 59.961 34.615 0.00 0.00 0.00 3.41
2679 3649 6.631971 TGTGAATGTGATTAGCAAAGTGAA 57.368 33.333 0.00 0.00 0.00 3.18
2680 3650 6.671190 TGTGAATGTGATTAGCAAAGTGAAG 58.329 36.000 0.00 0.00 0.00 3.02
2681 3651 5.570589 GTGAATGTGATTAGCAAAGTGAAGC 59.429 40.000 0.00 0.00 0.00 3.86
2683 3653 4.754372 TGTGATTAGCAAAGTGAAGCAG 57.246 40.909 0.00 0.00 0.00 4.24
2685 3655 5.005740 TGTGATTAGCAAAGTGAAGCAGAT 58.994 37.500 0.00 0.00 0.00 2.90
2686 3656 5.474532 TGTGATTAGCAAAGTGAAGCAGATT 59.525 36.000 0.00 0.00 0.00 2.40
2688 3658 7.174772 TGTGATTAGCAAAGTGAAGCAGATTAA 59.825 33.333 0.00 0.00 0.00 1.40
2689 3659 7.695618 GTGATTAGCAAAGTGAAGCAGATTAAG 59.304 37.037 0.00 0.00 0.00 1.85
2690 3660 6.500684 TTAGCAAAGTGAAGCAGATTAAGG 57.499 37.500 0.00 0.00 0.00 2.69
2691 3661 3.760684 AGCAAAGTGAAGCAGATTAAGGG 59.239 43.478 0.00 0.00 0.00 3.95
2692 3662 3.674410 GCAAAGTGAAGCAGATTAAGGGC 60.674 47.826 0.00 0.00 0.00 5.19
2693 3663 3.728385 AAGTGAAGCAGATTAAGGGCT 57.272 42.857 0.00 0.00 40.14 5.19
2694 3664 3.274095 AGTGAAGCAGATTAAGGGCTC 57.726 47.619 0.00 0.00 36.76 4.70
2695 3665 2.092699 AGTGAAGCAGATTAAGGGCTCC 60.093 50.000 0.00 0.00 36.76 4.70
2696 3666 2.092699 GTGAAGCAGATTAAGGGCTCCT 60.093 50.000 0.00 0.00 36.76 3.69
2697 3667 2.578021 TGAAGCAGATTAAGGGCTCCTT 59.422 45.455 10.76 10.76 46.63 3.36
2698 3668 3.010584 TGAAGCAGATTAAGGGCTCCTTT 59.989 43.478 11.15 0.00 41.69 3.11
2699 3669 3.010200 AGCAGATTAAGGGCTCCTTTG 57.990 47.619 11.15 5.67 41.69 2.77
2700 3670 2.578021 AGCAGATTAAGGGCTCCTTTGA 59.422 45.455 11.15 2.95 41.69 2.69
2701 3671 3.203934 AGCAGATTAAGGGCTCCTTTGAT 59.796 43.478 11.15 6.91 41.69 2.57
2702 3672 3.956848 GCAGATTAAGGGCTCCTTTGATT 59.043 43.478 11.15 0.00 41.69 2.57
2703 3673 4.037327 GCAGATTAAGGGCTCCTTTGATTC 59.963 45.833 11.15 5.05 41.69 2.52
2704 3674 4.582240 CAGATTAAGGGCTCCTTTGATTCC 59.418 45.833 11.15 0.00 41.69 3.01
2705 3675 4.230502 AGATTAAGGGCTCCTTTGATTCCA 59.769 41.667 11.15 0.00 41.69 3.53
2706 3676 2.999185 AAGGGCTCCTTTGATTCCAA 57.001 45.000 0.99 0.00 41.69 3.53
2707 3677 2.521547 AGGGCTCCTTTGATTCCAAG 57.478 50.000 0.00 0.00 33.23 3.61
2708 3678 1.713078 AGGGCTCCTTTGATTCCAAGT 59.287 47.619 0.00 0.00 33.23 3.16
2709 3679 2.919602 AGGGCTCCTTTGATTCCAAGTA 59.080 45.455 0.00 0.00 33.23 2.24
2710 3680 3.529319 AGGGCTCCTTTGATTCCAAGTAT 59.471 43.478 0.00 0.00 33.23 2.12
2711 3681 4.017130 AGGGCTCCTTTGATTCCAAGTATT 60.017 41.667 0.00 0.00 33.23 1.89
2712 3682 4.711846 GGGCTCCTTTGATTCCAAGTATTT 59.288 41.667 0.00 0.00 33.23 1.40
2713 3683 5.187772 GGGCTCCTTTGATTCCAAGTATTTT 59.812 40.000 0.00 0.00 33.23 1.82
2714 3684 6.333416 GGCTCCTTTGATTCCAAGTATTTTC 58.667 40.000 0.00 0.00 33.23 2.29
2715 3685 6.071391 GGCTCCTTTGATTCCAAGTATTTTCA 60.071 38.462 0.00 0.00 33.23 2.69
2716 3686 7.364144 GGCTCCTTTGATTCCAAGTATTTTCAT 60.364 37.037 0.00 0.00 33.23 2.57
2717 3687 8.686334 GCTCCTTTGATTCCAAGTATTTTCATA 58.314 33.333 0.00 0.00 33.23 2.15
2719 3689 9.189156 TCCTTTGATTCCAAGTATTTTCATAGG 57.811 33.333 0.00 0.00 35.15 2.57
2720 3690 7.922811 CCTTTGATTCCAAGTATTTTCATAGGC 59.077 37.037 0.00 0.00 33.23 3.93
2721 3691 7.953005 TTGATTCCAAGTATTTTCATAGGCA 57.047 32.000 0.00 0.00 0.00 4.75
2722 3692 8.537728 TTGATTCCAAGTATTTTCATAGGCAT 57.462 30.769 0.00 0.00 0.00 4.40
2723 3693 8.537728 TGATTCCAAGTATTTTCATAGGCATT 57.462 30.769 0.00 0.00 0.00 3.56
2724 3694 8.980596 TGATTCCAAGTATTTTCATAGGCATTT 58.019 29.630 0.00 0.00 0.00 2.32
2725 3695 9.822185 GATTCCAAGTATTTTCATAGGCATTTT 57.178 29.630 0.00 0.00 0.00 1.82
2726 3696 9.603921 ATTCCAAGTATTTTCATAGGCATTTTG 57.396 29.630 0.00 0.00 0.00 2.44
2727 3697 7.555087 TCCAAGTATTTTCATAGGCATTTTGG 58.445 34.615 0.00 0.00 33.31 3.28
2728 3698 7.398618 TCCAAGTATTTTCATAGGCATTTTGGA 59.601 33.333 0.00 0.00 37.45 3.53
2729 3699 7.707893 CCAAGTATTTTCATAGGCATTTTGGAG 59.292 37.037 0.00 0.00 33.74 3.86
2730 3700 7.352079 AGTATTTTCATAGGCATTTTGGAGG 57.648 36.000 0.00 0.00 0.00 4.30
2731 3701 7.125391 AGTATTTTCATAGGCATTTTGGAGGA 58.875 34.615 0.00 0.00 0.00 3.71
2732 3702 7.786464 AGTATTTTCATAGGCATTTTGGAGGAT 59.214 33.333 0.00 0.00 0.00 3.24
2733 3703 6.872585 TTTTCATAGGCATTTTGGAGGATT 57.127 33.333 0.00 0.00 0.00 3.01
2734 3704 7.969690 TTTTCATAGGCATTTTGGAGGATTA 57.030 32.000 0.00 0.00 0.00 1.75
2735 3705 7.587037 TTTCATAGGCATTTTGGAGGATTAG 57.413 36.000 0.00 0.00 0.00 1.73
2736 3706 6.514012 TCATAGGCATTTTGGAGGATTAGA 57.486 37.500 0.00 0.00 0.00 2.10
2737 3707 6.910191 TCATAGGCATTTTGGAGGATTAGAA 58.090 36.000 0.00 0.00 0.00 2.10
2738 3708 7.353525 TCATAGGCATTTTGGAGGATTAGAAA 58.646 34.615 0.00 0.00 0.00 2.52
2739 3709 8.006564 TCATAGGCATTTTGGAGGATTAGAAAT 58.993 33.333 0.00 0.00 0.00 2.17
2740 3710 8.645110 CATAGGCATTTTGGAGGATTAGAAATT 58.355 33.333 0.00 0.00 0.00 1.82
2741 3711 7.500629 AGGCATTTTGGAGGATTAGAAATTT 57.499 32.000 0.00 0.00 0.00 1.82
2742 3712 7.921304 AGGCATTTTGGAGGATTAGAAATTTT 58.079 30.769 0.00 0.00 0.00 1.82
2743 3713 9.045745 AGGCATTTTGGAGGATTAGAAATTTTA 57.954 29.630 0.00 0.00 0.00 1.52
2744 3714 9.317936 GGCATTTTGGAGGATTAGAAATTTTAG 57.682 33.333 0.00 0.00 0.00 1.85
2745 3715 9.317936 GCATTTTGGAGGATTAGAAATTTTAGG 57.682 33.333 0.00 0.00 0.00 2.69
2752 3722 9.534565 GGAGGATTAGAAATTTTAGGAATTTGC 57.465 33.333 1.82 0.00 30.68 3.68
2799 3769 7.912056 TTTTCAATGTTGGTTGTTTGATTCA 57.088 28.000 0.00 0.00 0.00 2.57
2800 3770 6.900568 TTCAATGTTGGTTGTTTGATTCAC 57.099 33.333 0.00 0.00 0.00 3.18
2801 3771 5.970592 TCAATGTTGGTTGTTTGATTCACA 58.029 33.333 0.00 0.00 0.00 3.58
2802 3772 6.041511 TCAATGTTGGTTGTTTGATTCACAG 58.958 36.000 0.00 0.00 0.00 3.66
2803 3773 4.383850 TGTTGGTTGTTTGATTCACAGG 57.616 40.909 0.00 0.00 0.00 4.00
2804 3774 4.019858 TGTTGGTTGTTTGATTCACAGGA 58.980 39.130 0.00 0.00 0.00 3.86
2805 3775 4.648762 TGTTGGTTGTTTGATTCACAGGAT 59.351 37.500 0.00 0.00 0.00 3.24
2806 3776 5.128499 TGTTGGTTGTTTGATTCACAGGATT 59.872 36.000 0.00 0.00 0.00 3.01
2807 3777 5.199024 TGGTTGTTTGATTCACAGGATTG 57.801 39.130 0.00 0.00 0.00 2.67
2808 3778 4.892345 TGGTTGTTTGATTCACAGGATTGA 59.108 37.500 0.00 0.00 0.00 2.57
2809 3779 5.362143 TGGTTGTTTGATTCACAGGATTGAA 59.638 36.000 0.00 0.00 39.79 2.69
2810 3780 5.691754 GGTTGTTTGATTCACAGGATTGAAC 59.308 40.000 0.00 0.00 38.31 3.18
2811 3781 5.452078 TGTTTGATTCACAGGATTGAACC 57.548 39.130 0.00 0.00 38.31 3.62
2812 3782 4.280677 TGTTTGATTCACAGGATTGAACCC 59.719 41.667 0.00 0.00 38.31 4.11
2813 3783 4.387026 TTGATTCACAGGATTGAACCCT 57.613 40.909 0.00 0.00 38.31 4.34
2814 3784 5.512942 TTGATTCACAGGATTGAACCCTA 57.487 39.130 0.00 0.00 38.31 3.53
2815 3785 5.715439 TGATTCACAGGATTGAACCCTAT 57.285 39.130 0.00 0.00 38.31 2.57
2816 3786 6.823286 TGATTCACAGGATTGAACCCTATA 57.177 37.500 0.00 0.00 38.31 1.31
2817 3787 6.830912 TGATTCACAGGATTGAACCCTATAG 58.169 40.000 0.00 0.00 38.31 1.31
2818 3788 6.615316 TGATTCACAGGATTGAACCCTATAGA 59.385 38.462 0.00 0.00 38.31 1.98
2819 3789 6.884472 TTCACAGGATTGAACCCTATAGAA 57.116 37.500 0.00 0.00 30.29 2.10
2820 3790 7.451731 TTCACAGGATTGAACCCTATAGAAT 57.548 36.000 0.00 0.00 30.29 2.40
2821 3791 7.451731 TCACAGGATTGAACCCTATAGAATT 57.548 36.000 0.00 0.00 31.64 2.17
2822 3792 7.872138 TCACAGGATTGAACCCTATAGAATTT 58.128 34.615 0.00 0.00 31.64 1.82
2823 3793 8.336235 TCACAGGATTGAACCCTATAGAATTTT 58.664 33.333 0.00 0.00 31.64 1.82
2824 3794 8.971073 CACAGGATTGAACCCTATAGAATTTTT 58.029 33.333 0.00 0.00 31.64 1.94
2871 3841 7.911130 TTTTTCATGGGATTTATAGCATCCA 57.089 32.000 12.79 3.35 42.03 3.41
2872 3842 6.899393 TTTCATGGGATTTATAGCATCCAC 57.101 37.500 12.79 5.51 42.03 4.02
2873 3843 5.848286 TCATGGGATTTATAGCATCCACT 57.152 39.130 12.79 0.46 42.03 4.00
2874 3844 5.809001 TCATGGGATTTATAGCATCCACTC 58.191 41.667 12.79 0.54 42.03 3.51
2875 3845 5.310331 TCATGGGATTTATAGCATCCACTCA 59.690 40.000 12.79 4.90 42.03 3.41
2876 3846 5.645056 TGGGATTTATAGCATCCACTCAA 57.355 39.130 12.79 0.00 42.03 3.02
2877 3847 6.012337 TGGGATTTATAGCATCCACTCAAA 57.988 37.500 12.79 0.00 42.03 2.69
2878 3848 6.430864 TGGGATTTATAGCATCCACTCAAAA 58.569 36.000 12.79 0.00 42.03 2.44
2879 3849 6.321181 TGGGATTTATAGCATCCACTCAAAAC 59.679 38.462 12.79 0.00 42.03 2.43
2880 3850 6.239036 GGGATTTATAGCATCCACTCAAAACC 60.239 42.308 12.79 0.00 42.03 3.27
2881 3851 6.547510 GGATTTATAGCATCCACTCAAAACCT 59.452 38.462 7.78 0.00 40.21 3.50
2882 3852 7.255277 GGATTTATAGCATCCACTCAAAACCTC 60.255 40.741 7.78 0.00 40.21 3.85
2883 3853 4.851639 ATAGCATCCACTCAAAACCTCT 57.148 40.909 0.00 0.00 0.00 3.69
2884 3854 3.515602 AGCATCCACTCAAAACCTCTT 57.484 42.857 0.00 0.00 0.00 2.85
2885 3855 3.416156 AGCATCCACTCAAAACCTCTTC 58.584 45.455 0.00 0.00 0.00 2.87
2886 3856 2.160417 GCATCCACTCAAAACCTCTTCG 59.840 50.000 0.00 0.00 0.00 3.79
2887 3857 3.664107 CATCCACTCAAAACCTCTTCGA 58.336 45.455 0.00 0.00 0.00 3.71
2888 3858 3.830744 TCCACTCAAAACCTCTTCGAA 57.169 42.857 0.00 0.00 0.00 3.71
2889 3859 4.145365 TCCACTCAAAACCTCTTCGAAA 57.855 40.909 0.00 0.00 0.00 3.46
2890 3860 4.127171 TCCACTCAAAACCTCTTCGAAAG 58.873 43.478 0.00 0.00 0.00 2.62
2891 3861 4.127171 CCACTCAAAACCTCTTCGAAAGA 58.873 43.478 0.00 0.00 39.20 2.52
2910 3880 9.677567 TCGAAAGAATTCTTTGTTTTTCCTATG 57.322 29.630 32.67 9.12 45.37 2.23
2911 3881 9.677567 CGAAAGAATTCTTTGTTTTTCCTATGA 57.322 29.630 32.67 0.00 45.37 2.15
2914 3884 8.992835 AGAATTCTTTGTTTTTCCTATGATGC 57.007 30.769 0.88 0.00 0.00 3.91
2915 3885 8.587608 AGAATTCTTTGTTTTTCCTATGATGCA 58.412 29.630 0.88 0.00 0.00 3.96
2916 3886 9.206870 GAATTCTTTGTTTTTCCTATGATGCAA 57.793 29.630 0.00 0.00 0.00 4.08
2917 3887 7.945033 TTCTTTGTTTTTCCTATGATGCAAC 57.055 32.000 0.00 0.00 0.00 4.17
2918 3888 6.454795 TCTTTGTTTTTCCTATGATGCAACC 58.545 36.000 0.00 0.00 0.00 3.77
2919 3889 5.798125 TTGTTTTTCCTATGATGCAACCA 57.202 34.783 0.00 0.00 0.00 3.67
2920 3890 5.798125 TGTTTTTCCTATGATGCAACCAA 57.202 34.783 0.00 0.00 0.00 3.67
2921 3891 6.166984 TGTTTTTCCTATGATGCAACCAAA 57.833 33.333 0.00 0.00 0.00 3.28
2922 3892 5.988561 TGTTTTTCCTATGATGCAACCAAAC 59.011 36.000 0.00 0.00 0.00 2.93
2923 3893 5.798125 TTTTCCTATGATGCAACCAAACA 57.202 34.783 0.00 0.00 0.00 2.83
2924 3894 5.798125 TTTCCTATGATGCAACCAAACAA 57.202 34.783 0.00 0.00 0.00 2.83
2925 3895 5.999205 TTCCTATGATGCAACCAAACAAT 57.001 34.783 0.00 0.00 0.00 2.71
2926 3896 5.581126 TCCTATGATGCAACCAAACAATC 57.419 39.130 0.00 0.00 0.00 2.67
2927 3897 5.015515 TCCTATGATGCAACCAAACAATCA 58.984 37.500 0.00 0.00 0.00 2.57
2928 3898 5.479724 TCCTATGATGCAACCAAACAATCAA 59.520 36.000 0.00 0.00 0.00 2.57
2929 3899 6.014755 TCCTATGATGCAACCAAACAATCAAA 60.015 34.615 0.00 0.00 0.00 2.69
2930 3900 6.649973 CCTATGATGCAACCAAACAATCAAAA 59.350 34.615 0.00 0.00 0.00 2.44
2931 3901 6.939132 ATGATGCAACCAAACAATCAAAAA 57.061 29.167 0.00 0.00 0.00 1.94
2932 3902 6.939132 TGATGCAACCAAACAATCAAAAAT 57.061 29.167 0.00 0.00 0.00 1.82
2933 3903 7.330900 TGATGCAACCAAACAATCAAAAATT 57.669 28.000 0.00 0.00 0.00 1.82
2934 3904 7.416022 TGATGCAACCAAACAATCAAAAATTC 58.584 30.769 0.00 0.00 0.00 2.17
2935 3905 6.998968 TGCAACCAAACAATCAAAAATTCT 57.001 29.167 0.00 0.00 0.00 2.40
2936 3906 6.783162 TGCAACCAAACAATCAAAAATTCTG 58.217 32.000 0.00 0.00 0.00 3.02
2937 3907 6.373774 TGCAACCAAACAATCAAAAATTCTGT 59.626 30.769 0.00 0.00 0.00 3.41
2938 3908 7.550551 TGCAACCAAACAATCAAAAATTCTGTA 59.449 29.630 0.00 0.00 0.00 2.74
2939 3909 8.394121 GCAACCAAACAATCAAAAATTCTGTAA 58.606 29.630 0.00 0.00 0.00 2.41
2940 3910 9.919348 CAACCAAACAATCAAAAATTCTGTAAG 57.081 29.630 0.00 0.00 0.00 2.34
2941 3911 9.883142 AACCAAACAATCAAAAATTCTGTAAGA 57.117 25.926 0.00 0.00 44.68 2.10
2952 3922 9.286946 CAAAAATTCTGTAAGATTGAGATGAGC 57.713 33.333 0.00 0.00 46.36 4.26
2953 3923 8.571461 AAAATTCTGTAAGATTGAGATGAGCA 57.429 30.769 0.00 0.00 46.36 4.26
2954 3924 8.749026 AAATTCTGTAAGATTGAGATGAGCAT 57.251 30.769 0.00 0.00 46.36 3.79
2955 3925 7.731882 ATTCTGTAAGATTGAGATGAGCATG 57.268 36.000 0.00 0.00 46.36 4.06
2956 3926 6.475596 TCTGTAAGATTGAGATGAGCATGA 57.524 37.500 0.00 0.00 38.67 3.07
2957 3927 6.279123 TCTGTAAGATTGAGATGAGCATGAC 58.721 40.000 0.00 0.00 38.67 3.06
2958 3928 5.981174 TGTAAGATTGAGATGAGCATGACA 58.019 37.500 0.00 0.00 0.00 3.58
2959 3929 6.589135 TGTAAGATTGAGATGAGCATGACAT 58.411 36.000 0.00 0.61 0.00 3.06
2960 3930 7.052248 TGTAAGATTGAGATGAGCATGACATT 58.948 34.615 0.00 0.00 0.00 2.71
2961 3931 6.621316 AAGATTGAGATGAGCATGACATTC 57.379 37.500 0.00 3.44 0.00 2.67
2962 3932 5.064558 AGATTGAGATGAGCATGACATTCC 58.935 41.667 0.00 0.00 0.00 3.01
2963 3933 3.204306 TGAGATGAGCATGACATTCCC 57.796 47.619 0.00 0.00 0.00 3.97
2964 3934 2.506644 TGAGATGAGCATGACATTCCCA 59.493 45.455 0.00 0.00 0.00 4.37
2965 3935 3.139850 GAGATGAGCATGACATTCCCAG 58.860 50.000 0.00 0.00 0.00 4.45
2966 3936 1.607628 GATGAGCATGACATTCCCAGC 59.392 52.381 0.00 0.00 0.00 4.85
2967 3937 0.394762 TGAGCATGACATTCCCAGCC 60.395 55.000 0.00 0.00 0.00 4.85
2968 3938 0.106819 GAGCATGACATTCCCAGCCT 60.107 55.000 0.00 0.00 0.00 4.58
2969 3939 1.141657 GAGCATGACATTCCCAGCCTA 59.858 52.381 0.00 0.00 0.00 3.93
2970 3940 1.779092 AGCATGACATTCCCAGCCTAT 59.221 47.619 0.00 0.00 0.00 2.57
2971 3941 1.884579 GCATGACATTCCCAGCCTATG 59.115 52.381 0.00 0.00 0.00 2.23
2972 3942 2.750807 GCATGACATTCCCAGCCTATGT 60.751 50.000 0.00 0.00 35.33 2.29
2973 3943 3.559069 CATGACATTCCCAGCCTATGTT 58.441 45.455 0.00 0.00 32.94 2.71
2974 3944 3.737559 TGACATTCCCAGCCTATGTTT 57.262 42.857 0.00 0.00 32.94 2.83
2975 3945 4.046286 TGACATTCCCAGCCTATGTTTT 57.954 40.909 0.00 0.00 32.94 2.43
2976 3946 4.016444 TGACATTCCCAGCCTATGTTTTC 58.984 43.478 0.00 0.00 32.94 2.29
2977 3947 3.365472 ACATTCCCAGCCTATGTTTTCC 58.635 45.455 0.00 0.00 0.00 3.13
2978 3948 3.011708 ACATTCCCAGCCTATGTTTTCCT 59.988 43.478 0.00 0.00 0.00 3.36
2979 3949 4.229582 ACATTCCCAGCCTATGTTTTCCTA 59.770 41.667 0.00 0.00 0.00 2.94
2980 3950 5.103515 ACATTCCCAGCCTATGTTTTCCTAT 60.104 40.000 0.00 0.00 0.00 2.57
2981 3951 5.466127 TTCCCAGCCTATGTTTTCCTATT 57.534 39.130 0.00 0.00 0.00 1.73
2982 3952 5.048846 TCCCAGCCTATGTTTTCCTATTC 57.951 43.478 0.00 0.00 0.00 1.75
2983 3953 4.141251 TCCCAGCCTATGTTTTCCTATTCC 60.141 45.833 0.00 0.00 0.00 3.01
2984 3954 4.145052 CCAGCCTATGTTTTCCTATTCCC 58.855 47.826 0.00 0.00 0.00 3.97
2985 3955 3.815401 CAGCCTATGTTTTCCTATTCCCG 59.185 47.826 0.00 0.00 0.00 5.14
2986 3956 2.552743 GCCTATGTTTTCCTATTCCCGC 59.447 50.000 0.00 0.00 0.00 6.13
2987 3957 2.806244 CCTATGTTTTCCTATTCCCGCG 59.194 50.000 0.00 0.00 0.00 6.46
2988 3958 1.021968 ATGTTTTCCTATTCCCGCGC 58.978 50.000 0.00 0.00 0.00 6.86
2989 3959 0.035820 TGTTTTCCTATTCCCGCGCT 60.036 50.000 5.56 0.00 0.00 5.92
2990 3960 1.092348 GTTTTCCTATTCCCGCGCTT 58.908 50.000 5.56 0.00 0.00 4.68
2991 3961 1.471287 GTTTTCCTATTCCCGCGCTTT 59.529 47.619 5.56 0.00 0.00 3.51
2992 3962 1.828979 TTTCCTATTCCCGCGCTTTT 58.171 45.000 5.56 0.00 0.00 2.27
2993 3963 2.695127 TTCCTATTCCCGCGCTTTTA 57.305 45.000 5.56 0.00 0.00 1.52
2994 3964 2.695127 TCCTATTCCCGCGCTTTTAA 57.305 45.000 5.56 0.00 0.00 1.52
2995 3965 2.988570 TCCTATTCCCGCGCTTTTAAA 58.011 42.857 5.56 0.00 0.00 1.52
2996 3966 3.345414 TCCTATTCCCGCGCTTTTAAAA 58.655 40.909 5.56 0.00 0.00 1.52
2997 3967 3.949113 TCCTATTCCCGCGCTTTTAAAAT 59.051 39.130 5.56 0.00 0.00 1.82
2998 3968 4.035909 TCCTATTCCCGCGCTTTTAAAATC 59.964 41.667 5.56 0.00 0.00 2.17
2999 3969 2.640346 TTCCCGCGCTTTTAAAATCC 57.360 45.000 5.56 0.00 0.00 3.01
3000 3970 0.812549 TCCCGCGCTTTTAAAATCCC 59.187 50.000 5.56 0.00 0.00 3.85
3001 3971 0.524604 CCCGCGCTTTTAAAATCCCG 60.525 55.000 5.56 1.59 0.00 5.14
3002 3972 0.169451 CCGCGCTTTTAAAATCCCGT 59.831 50.000 5.56 0.00 0.00 5.28
3003 3973 1.255767 CGCGCTTTTAAAATCCCGTG 58.744 50.000 5.56 7.78 0.00 4.94
3004 3974 1.135916 CGCGCTTTTAAAATCCCGTGA 60.136 47.619 17.21 0.00 0.00 4.35
3005 3975 2.666069 CGCGCTTTTAAAATCCCGTGAA 60.666 45.455 17.21 0.00 0.00 3.18
3006 3976 3.507786 GCGCTTTTAAAATCCCGTGAAT 58.492 40.909 0.00 0.00 0.00 2.57
3007 3977 4.664188 GCGCTTTTAAAATCCCGTGAATA 58.336 39.130 0.00 0.00 0.00 1.75
3008 3978 5.096849 GCGCTTTTAAAATCCCGTGAATAA 58.903 37.500 0.00 0.00 0.00 1.40
3009 3979 5.573669 GCGCTTTTAAAATCCCGTGAATAAA 59.426 36.000 0.00 0.00 0.00 1.40
3010 3980 6.089685 GCGCTTTTAAAATCCCGTGAATAAAA 59.910 34.615 0.00 0.00 0.00 1.52
3011 3981 7.662761 CGCTTTTAAAATCCCGTGAATAAAAG 58.337 34.615 14.06 14.06 37.72 2.27
3012 3982 7.539366 CGCTTTTAAAATCCCGTGAATAAAAGA 59.461 33.333 18.74 0.00 37.37 2.52
3013 3983 9.198837 GCTTTTAAAATCCCGTGAATAAAAGAA 57.801 29.630 18.74 0.00 37.37 2.52
3015 3985 8.751302 TTTAAAATCCCGTGAATAAAAGAAGC 57.249 30.769 0.00 0.00 0.00 3.86
3016 3986 4.983671 AATCCCGTGAATAAAAGAAGCC 57.016 40.909 0.00 0.00 0.00 4.35
3017 3987 2.718563 TCCCGTGAATAAAAGAAGCCC 58.281 47.619 0.00 0.00 0.00 5.19
3018 3988 2.307686 TCCCGTGAATAAAAGAAGCCCT 59.692 45.455 0.00 0.00 0.00 5.19
3025 3995 7.189512 CGTGAATAAAAGAAGCCCTAATTCAG 58.810 38.462 0.00 0.00 33.29 3.02
3033 4003 3.939740 AGCCCTAATTCAGATGAGCAA 57.060 42.857 0.00 0.00 0.00 3.91
3036 4006 5.206587 AGCCCTAATTCAGATGAGCAATTT 58.793 37.500 0.00 0.00 0.00 1.82
3039 4009 5.221382 CCCTAATTCAGATGAGCAATTTGGG 60.221 44.000 9.41 9.41 42.39 4.12
3051 4021 5.538053 TGAGCAATTTGGGAACTGTGATTTA 59.462 36.000 0.00 0.00 0.00 1.40
3052 4022 5.783111 AGCAATTTGGGAACTGTGATTTAC 58.217 37.500 0.00 0.00 0.00 2.01
3062 4032 6.374578 GGAACTGTGATTTACTGCTTCTTTC 58.625 40.000 0.00 0.00 0.00 2.62
3063 4033 5.597813 ACTGTGATTTACTGCTTCTTTCG 57.402 39.130 0.00 0.00 0.00 3.46
3071 4041 6.535274 TTTACTGCTTCTTTCGTAGGAAAC 57.465 37.500 6.50 0.00 37.24 2.78
3072 4042 4.067972 ACTGCTTCTTTCGTAGGAAACA 57.932 40.909 6.50 3.24 37.24 2.83
3080 4050 5.909477 TCTTTCGTAGGAAACACTCTGAAA 58.091 37.500 6.50 0.00 37.24 2.69
3152 4130 7.334858 AGGATAGAACACTGGAAGAATTTCTC 58.665 38.462 0.00 0.00 37.43 2.87
3160 4138 5.591877 CACTGGAAGAATTTCTCCTATTGGG 59.408 44.000 0.00 0.00 37.43 4.12
3194 4172 2.396590 AATTGACGGAGGCGTGTAAT 57.603 45.000 0.00 0.00 0.00 1.89
3205 4183 1.153329 CGTGTAATGGCGGCCCTTA 60.153 57.895 17.97 14.65 0.00 2.69
3226 4204 2.613129 AGAAAAGGAAGCCCAAATGCT 58.387 42.857 0.00 0.00 45.43 3.79
3236 4214 0.604578 CCCAAATGCTTGTGGTCCAG 59.395 55.000 7.97 0.00 32.60 3.86
3249 4227 3.587061 TGTGGTCCAGATAGATTGTGGTT 59.413 43.478 0.00 0.00 32.73 3.67
3251 4229 3.118775 TGGTCCAGATAGATTGTGGTTCG 60.119 47.826 0.00 0.00 32.73 3.95
3263 4241 2.844946 TGTGGTTCGCTTTCTTCATCA 58.155 42.857 0.00 0.00 0.00 3.07
3275 4253 5.105310 GCTTTCTTCATCACCTAGGTACTCA 60.105 44.000 15.80 0.00 41.75 3.41
3290 4268 5.754782 AGGTACTCATGGTATTGCATCAAA 58.245 37.500 0.00 0.00 32.56 2.69
3319 4297 2.687425 CCACCTCACAATGTTGTCAACA 59.313 45.455 20.28 20.28 46.94 3.33
3340 4318 6.037786 ACATATATGGTCACCGGTTAGATG 57.962 41.667 16.96 10.36 0.00 2.90
3354 4332 9.716507 CACCGGTTAGATGAAATTTTACATAAG 57.283 33.333 2.97 0.00 0.00 1.73
3405 4383 5.926542 GTCTACTTTATTATGCTCGCCATGA 59.073 40.000 0.00 0.00 35.34 3.07
3430 4410 6.482308 ACTGTAGAGTTGACATGGTGTTTAAC 59.518 38.462 0.00 0.00 31.94 2.01
3466 4446 4.040461 TCTCCTTTGCAGGCTATATACCAC 59.960 45.833 0.00 0.00 40.58 4.16
3467 4447 3.714280 TCCTTTGCAGGCTATATACCACA 59.286 43.478 0.00 0.95 40.58 4.17
3470 4450 3.751479 TGCAGGCTATATACCACACTG 57.249 47.619 0.00 0.00 0.00 3.66
3471 4451 3.038280 TGCAGGCTATATACCACACTGT 58.962 45.455 0.00 0.00 0.00 3.55
3472 4452 3.069586 TGCAGGCTATATACCACACTGTC 59.930 47.826 0.00 0.00 0.00 3.51
3474 4454 4.559704 GCAGGCTATATACCACACTGTCTC 60.560 50.000 0.00 0.00 0.00 3.36
3475 4455 4.021894 CAGGCTATATACCACACTGTCTCC 60.022 50.000 0.00 0.00 0.00 3.71
3476 4456 3.895656 GGCTATATACCACACTGTCTCCA 59.104 47.826 0.00 0.00 0.00 3.86
3477 4457 4.021894 GGCTATATACCACACTGTCTCCAG 60.022 50.000 0.00 0.00 44.68 3.86
3478 4458 4.827835 GCTATATACCACACTGTCTCCAGA 59.172 45.833 0.00 0.00 41.50 3.86
3480 4460 5.860941 ATATACCACACTGTCTCCAGAAG 57.139 43.478 0.00 0.00 41.50 2.85
3481 4461 1.794714 ACCACACTGTCTCCAGAAGT 58.205 50.000 0.00 0.00 41.50 3.01
3483 4463 2.160822 CACACTGTCTCCAGAAGTGG 57.839 55.000 16.54 0.00 44.49 4.00
3484 4464 1.414181 CACACTGTCTCCAGAAGTGGT 59.586 52.381 16.54 6.27 44.49 4.16
3485 4465 1.689273 ACACTGTCTCCAGAAGTGGTC 59.311 52.381 16.54 0.00 44.49 4.02
3487 4467 2.366916 CACTGTCTCCAGAAGTGGTCTT 59.633 50.000 0.00 0.00 45.28 3.01
3488 4468 2.366916 ACTGTCTCCAGAAGTGGTCTTG 59.633 50.000 0.00 0.00 45.28 3.02
3489 4469 2.366916 CTGTCTCCAGAAGTGGTCTTGT 59.633 50.000 0.00 0.00 45.28 3.16
3493 4475 3.321111 TCTCCAGAAGTGGTCTTGTGTAC 59.679 47.826 4.85 0.00 45.28 2.90
3496 4478 4.102524 TCCAGAAGTGGTCTTGTGTACAAT 59.897 41.667 0.00 0.00 45.28 2.71
3499 4481 5.702670 CAGAAGTGGTCTTGTGTACAATGAT 59.297 40.000 0.00 0.00 39.24 2.45
3512 4494 2.726821 ACAATGATTGGAACATCGGCT 58.273 42.857 10.27 0.00 39.30 5.52
3513 4495 2.424601 ACAATGATTGGAACATCGGCTG 59.575 45.455 10.27 0.00 39.30 4.85
3514 4496 2.684374 CAATGATTGGAACATCGGCTGA 59.316 45.455 0.00 0.00 39.30 4.26
3533 4515 2.881513 TGATGTTTGTTGCGGTGTGTAT 59.118 40.909 0.00 0.00 0.00 2.29
3552 4534 0.537143 TGCATTTGGAGCAGACGGTT 60.537 50.000 0.00 0.00 37.02 4.44
3563 4545 3.335579 AGCAGACGGTTAGGATGTTTTC 58.664 45.455 0.00 0.00 0.00 2.29
3634 4616 3.294214 CCCTAGCCTAGTTTCGGTCTAA 58.706 50.000 0.00 0.00 0.00 2.10
3635 4617 3.067883 CCCTAGCCTAGTTTCGGTCTAAC 59.932 52.174 0.00 0.00 0.00 2.34
3636 4618 3.698040 CCTAGCCTAGTTTCGGTCTAACA 59.302 47.826 0.00 0.00 0.00 2.41
3637 4619 4.341520 CCTAGCCTAGTTTCGGTCTAACAT 59.658 45.833 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.275134 AGATGGTGTGTGTTGATGCA 57.725 45.000 0.00 0.00 0.00 3.96
66 67 4.202357 ACAGTTGGTATTCTCAGCTTGTCA 60.202 41.667 0.00 0.00 0.00 3.58
87 88 4.248058 CACACACATGATCTGCTAGAACA 58.752 43.478 0.00 0.00 31.50 3.18
123 124 1.035923 TGGAGGCTGATTCTAGAGCG 58.964 55.000 0.00 0.00 35.95 5.03
139 140 1.846439 GGGAGGGTGAAAGATGATGGA 59.154 52.381 0.00 0.00 0.00 3.41
142 143 1.566231 GGTGGGAGGGTGAAAGATGAT 59.434 52.381 0.00 0.00 0.00 2.45
143 144 0.991920 GGTGGGAGGGTGAAAGATGA 59.008 55.000 0.00 0.00 0.00 2.92
172 173 2.964464 TGGCAAGGTGAATGTGTTGATT 59.036 40.909 0.00 0.00 0.00 2.57
196 197 2.588146 TAGCGACGACGGCAGTAAGC 62.588 60.000 9.67 0.00 44.65 3.09
210 211 3.210223 TTTGGCGTCGTGGTAGCGA 62.210 57.895 0.00 0.00 38.68 4.93
214 215 0.869068 CATTGTTTGGCGTCGTGGTA 59.131 50.000 0.00 0.00 0.00 3.25
250 251 2.421424 GCCAAGATGTGACTTGATGGAC 59.579 50.000 9.55 0.00 46.85 4.02
262 263 3.446442 AGATCCAACTTGCCAAGATGT 57.554 42.857 12.25 0.00 30.10 3.06
278 279 8.559536 TCGCCAATGATAAACATAGAAAAGATC 58.440 33.333 0.00 0.00 38.38 2.75
279 281 8.450578 TCGCCAATGATAAACATAGAAAAGAT 57.549 30.769 0.00 0.00 38.38 2.40
281 283 8.344831 TCATCGCCAATGATAAACATAGAAAAG 58.655 33.333 0.00 0.00 39.52 2.27
295 297 4.944619 ACTTCTATCTCATCGCCAATGA 57.055 40.909 0.00 0.00 42.21 2.57
346 360 4.220602 GGATACCAAATGGCTTCAACTTGT 59.779 41.667 0.00 0.00 39.32 3.16
372 386 3.314693 TCCTACAAAGCTTATCCGGGAT 58.685 45.455 15.04 15.04 0.00 3.85
378 392 6.367422 CGGATGATCTTCCTACAAAGCTTATC 59.633 42.308 21.73 0.00 33.30 1.75
411 425 9.844790 CTTAATCAAGCAGAATGTGATGTTAAA 57.155 29.630 0.00 0.00 39.31 1.52
452 688 7.599171 TCTAATTGACGTCTTAGATGTGAACA 58.401 34.615 18.36 1.19 28.69 3.18
522 758 9.806203 GACAAATGGTCAATGAAAATGATGATA 57.194 29.630 0.00 0.00 46.19 2.15
560 796 8.973378 CGAAGTTGTAGAAAAATGGCAAAATAA 58.027 29.630 0.00 0.00 0.00 1.40
570 806 6.854496 TGCACTACGAAGTTGTAGAAAAAT 57.146 33.333 11.88 0.00 45.98 1.82
579 815 4.022464 TGGTTTTTGCACTACGAAGTTG 57.978 40.909 0.00 0.00 37.78 3.16
585 822 4.555348 TTAGGTTGGTTTTTGCACTACG 57.445 40.909 0.00 0.00 0.00 3.51
602 839 6.603201 TCCAGGCTTTCATCTAATTGTTTAGG 59.397 38.462 0.00 0.00 36.30 2.69
603 840 7.630242 TCCAGGCTTTCATCTAATTGTTTAG 57.370 36.000 0.00 0.00 36.87 1.85
604 841 9.120538 GTATCCAGGCTTTCATCTAATTGTTTA 57.879 33.333 0.00 0.00 0.00 2.01
608 845 7.572523 TTGTATCCAGGCTTTCATCTAATTG 57.427 36.000 0.00 0.00 0.00 2.32
612 849 6.662755 ACATTTGTATCCAGGCTTTCATCTA 58.337 36.000 0.00 0.00 0.00 1.98
622 859 4.956085 TGATACCGACATTTGTATCCAGG 58.044 43.478 7.08 0.00 41.60 4.45
657 1420 1.152756 GATTTGGGCCGCCAGGTAT 60.153 57.895 12.58 0.00 40.50 2.73
665 1428 0.107848 AGGAGTAACGATTTGGGCCG 60.108 55.000 0.00 0.00 0.00 6.13
676 1439 6.780457 TGTACCACATAACCTAGGAGTAAC 57.220 41.667 17.98 7.90 0.00 2.50
703 1466 8.865090 CCATGTTTGACTACTCTAGGATAATCT 58.135 37.037 0.00 0.00 0.00 2.40
716 1479 3.619038 GTCTAGCAGCCATGTTTGACTAC 59.381 47.826 0.00 0.00 38.62 2.73
745 1508 1.404843 TTACTTTGGGCAACACCACC 58.595 50.000 0.00 0.00 41.03 4.61
751 1534 9.135843 GATAACATAGTTTTTACTTTGGGCAAC 57.864 33.333 0.00 0.00 0.00 4.17
785 1568 4.970662 AGTAAGCTTGGTCGTAATCGTA 57.029 40.909 9.86 0.00 38.33 3.43
786 1569 3.863142 AGTAAGCTTGGTCGTAATCGT 57.137 42.857 9.86 0.00 38.33 3.73
787 1570 5.165911 TCTAGTAAGCTTGGTCGTAATCG 57.834 43.478 9.86 0.00 38.55 3.34
788 1571 5.298777 TCCTCTAGTAAGCTTGGTCGTAATC 59.701 44.000 9.86 0.00 0.00 1.75
789 1572 5.198965 TCCTCTAGTAAGCTTGGTCGTAAT 58.801 41.667 9.86 0.00 0.00 1.89
790 1573 4.592942 TCCTCTAGTAAGCTTGGTCGTAA 58.407 43.478 9.86 0.00 0.00 3.18
813 1596 0.535335 TTTGGCGGATCTAAGCGAGT 59.465 50.000 0.00 0.00 0.00 4.18
814 1597 0.931005 GTTTGGCGGATCTAAGCGAG 59.069 55.000 0.00 0.00 0.00 5.03
815 1598 0.535335 AGTTTGGCGGATCTAAGCGA 59.465 50.000 0.00 0.00 0.00 4.93
816 1599 1.327764 GAAGTTTGGCGGATCTAAGCG 59.672 52.381 0.00 0.00 0.00 4.68
817 1600 1.671328 GGAAGTTTGGCGGATCTAAGC 59.329 52.381 0.00 0.00 0.00 3.09
818 1601 3.268023 AGGAAGTTTGGCGGATCTAAG 57.732 47.619 0.00 0.00 0.00 2.18
819 1602 3.713826 AAGGAAGTTTGGCGGATCTAA 57.286 42.857 0.00 0.00 0.00 2.10
820 1603 3.008594 TGAAAGGAAGTTTGGCGGATCTA 59.991 43.478 0.00 0.00 0.00 1.98
821 1604 2.224769 TGAAAGGAAGTTTGGCGGATCT 60.225 45.455 0.00 0.00 0.00 2.75
836 1619 9.741647 GATTTAGGATTTAGCTCAAATGAAAGG 57.258 33.333 0.00 0.00 36.96 3.11
842 1625 6.779539 CCAGGGATTTAGGATTTAGCTCAAAT 59.220 38.462 0.00 0.00 39.63 2.32
858 1641 2.123726 GGCATCGCCCAGGGATTT 60.124 61.111 10.89 0.00 44.06 2.17
869 1652 6.301108 CAGATTTGATTTGTTTTTGGCATCG 58.699 36.000 0.00 0.00 0.00 3.84
895 1686 2.060050 TTTGTTTCAAGCGGGAGGAA 57.940 45.000 0.00 0.00 0.00 3.36
944 1735 1.961277 GAGGGCTGTGTTGGTGACG 60.961 63.158 0.00 0.00 0.00 4.35
1138 2081 3.426568 GGCGTTGCAGAGCTGGAC 61.427 66.667 13.83 0.00 0.00 4.02
1199 2142 1.535687 AGGTGTAGGTTGGGCTCGT 60.536 57.895 0.00 0.00 0.00 4.18
1282 2225 2.482374 GCACCTCAGCATGCGAAC 59.518 61.111 13.01 0.00 34.76 3.95
1383 2326 2.032528 TGCTTGCCCAGTTCGAGG 59.967 61.111 0.00 0.00 0.00 4.63
1450 2393 4.582701 ACATCTCGATCATGGAGTTCTC 57.417 45.455 8.84 0.00 33.26 2.87
1500 2443 4.072088 CCGTCGAACACCTTGCGC 62.072 66.667 0.00 0.00 0.00 6.09
1551 2494 2.851104 GCGTGCGCCGATATAACC 59.149 61.111 20.06 0.00 39.56 2.85
1566 2509 3.842923 ATCTGACCCAGCCTCGCG 61.843 66.667 0.00 0.00 0.00 5.87
1599 2542 4.517285 TCTCAGGCATGGAGTTGAATAAC 58.483 43.478 0.00 0.00 37.06 1.89
1600 2543 4.842531 TCTCAGGCATGGAGTTGAATAA 57.157 40.909 0.00 0.00 34.04 1.40
1617 2560 2.028112 CCAGGAAACGATGGTCTTCTCA 60.028 50.000 0.00 0.00 0.00 3.27
1626 2569 1.522668 TTGCAGTCCAGGAAACGATG 58.477 50.000 0.00 0.00 0.00 3.84
1645 2588 2.975536 CGTGTACCCGGACACCAT 59.024 61.111 18.01 0.00 45.77 3.55
1663 2606 4.821589 CGAGAAGTCCCCCGCTGC 62.822 72.222 0.00 0.00 0.00 5.25
1700 2643 1.551883 AGCCTTCCATTTGCATCAACC 59.448 47.619 0.00 0.00 0.00 3.77
1703 2646 2.898612 TCAAAGCCTTCCATTTGCATCA 59.101 40.909 0.00 0.00 36.55 3.07
1704 2647 3.518590 CTCAAAGCCTTCCATTTGCATC 58.481 45.455 0.00 0.00 36.55 3.91
1725 2668 4.796231 ATGCTCACGTCGTCCGGC 62.796 66.667 0.00 0.67 42.24 6.13
1737 2680 2.809601 AACACCGCGACGATGCTC 60.810 61.111 8.23 0.00 0.00 4.26
1773 2716 3.230245 CCTAGCTCCAGGGCTCCG 61.230 72.222 0.00 0.00 42.97 4.63
1834 2777 2.032894 GCGCATTGCATACGTATGTCTT 60.033 45.455 30.63 16.11 45.45 3.01
1854 2797 0.030773 TCGCGTACATCTCCATCAGC 59.969 55.000 5.77 0.00 0.00 4.26
1938 2881 1.485838 CGCTGATCATCGTGCTCCAC 61.486 60.000 10.72 0.00 0.00 4.02
2049 2992 3.695606 GCTGACAGGAGCCCGACA 61.696 66.667 4.26 0.00 32.35 4.35
2101 3044 2.186076 CTTCATGCGGTCGAAGTAGTC 58.814 52.381 0.00 0.00 35.06 2.59
2126 3069 0.947244 GCCAGGTTCGATGCCATAAG 59.053 55.000 8.90 0.00 0.00 1.73
2181 3124 0.669318 GCACGATTTGTCCTGACCGA 60.669 55.000 0.00 0.00 0.00 4.69
2208 3151 3.812262 TGGCATGTCCAGTATGAGATTG 58.188 45.455 4.93 0.00 40.72 2.67
2230 3173 0.107703 ATCTTCGCATCGGCAGGAAA 60.108 50.000 0.00 0.00 41.24 3.13
2286 3229 4.771356 ACGGCCGTGTCGACATCG 62.771 66.667 33.75 23.81 41.45 3.84
2322 3265 4.717629 TCTGGTTCCAGCGCGACG 62.718 66.667 12.10 0.00 34.33 5.12
2328 3271 1.733399 GACGTCGTCTGGTTCCAGC 60.733 63.158 18.09 8.22 34.33 4.85
2346 3289 1.091771 CCAGCATGACTAGGTTGCCG 61.092 60.000 0.00 1.45 39.69 5.69
2355 3298 1.968017 CACGTTGGCCAGCATGACT 60.968 57.895 20.42 0.00 39.69 3.41
2505 3472 3.496331 TCCAAATTCAGGTTTCAGGTCC 58.504 45.455 0.00 0.00 0.00 4.46
2530 3497 2.228822 GGATGTTCAGAACGCCAACAAT 59.771 45.455 16.38 0.96 33.84 2.71
2545 3512 2.270205 CTGCGAGGCCAGGATGTT 59.730 61.111 5.01 0.00 0.00 2.71
2571 3538 3.314307 TCGATGGAATCTACACCCTCT 57.686 47.619 0.00 0.00 42.58 3.69
2585 3552 6.380995 TCAACAAAACAATCTGAATCGATGG 58.619 36.000 0.00 0.00 0.00 3.51
2593 3560 8.927721 CATATTTGCATCAACAAAACAATCTGA 58.072 29.630 0.00 0.00 42.45 3.27
2597 3564 8.714179 CAGACATATTTGCATCAACAAAACAAT 58.286 29.630 0.00 0.00 42.45 2.71
2612 3579 7.907045 GTCAGAACACAATAGCAGACATATTTG 59.093 37.037 0.00 0.00 0.00 2.32
2613 3580 7.066284 GGTCAGAACACAATAGCAGACATATTT 59.934 37.037 0.00 0.00 0.00 1.40
2622 3589 3.191162 GCAATGGTCAGAACACAATAGCA 59.809 43.478 0.00 0.00 0.00 3.49
2623 3590 3.191162 TGCAATGGTCAGAACACAATAGC 59.809 43.478 0.00 0.00 0.00 2.97
2625 3592 4.140536 TGTGCAATGGTCAGAACACAATA 58.859 39.130 0.00 0.00 35.28 1.90
2630 3597 2.293955 CACATGTGCAATGGTCAGAACA 59.706 45.455 13.94 0.00 0.00 3.18
2633 3603 2.275134 ACACATGTGCAATGGTCAGA 57.725 45.000 25.68 0.00 0.00 3.27
2650 3620 5.764487 TGCTAATCACATTCACAACAACA 57.236 34.783 0.00 0.00 0.00 3.33
2654 3624 6.437928 TCACTTTGCTAATCACATTCACAAC 58.562 36.000 0.00 0.00 0.00 3.32
2661 3631 5.005740 TCTGCTTCACTTTGCTAATCACAT 58.994 37.500 0.00 0.00 0.00 3.21
2669 3639 3.760684 CCCTTAATCTGCTTCACTTTGCT 59.239 43.478 0.00 0.00 0.00 3.91
2671 3641 3.760684 AGCCCTTAATCTGCTTCACTTTG 59.239 43.478 0.00 0.00 29.17 2.77
2672 3642 4.013050 GAGCCCTTAATCTGCTTCACTTT 58.987 43.478 0.00 0.00 34.99 2.66
2673 3643 3.615155 GAGCCCTTAATCTGCTTCACTT 58.385 45.455 0.00 0.00 34.99 3.16
2674 3644 2.092699 GGAGCCCTTAATCTGCTTCACT 60.093 50.000 0.00 0.00 34.99 3.41
2675 3645 2.092699 AGGAGCCCTTAATCTGCTTCAC 60.093 50.000 0.00 0.00 34.99 3.18
2677 3647 3.289407 AAGGAGCCCTTAATCTGCTTC 57.711 47.619 4.81 0.00 42.74 3.86
2678 3648 3.010584 TCAAAGGAGCCCTTAATCTGCTT 59.989 43.478 6.88 0.00 43.92 3.91
2679 3649 2.578021 TCAAAGGAGCCCTTAATCTGCT 59.422 45.455 6.88 0.00 43.92 4.24
2680 3650 3.004752 TCAAAGGAGCCCTTAATCTGC 57.995 47.619 6.88 0.00 43.92 4.26
2681 3651 4.582240 GGAATCAAAGGAGCCCTTAATCTG 59.418 45.833 6.88 2.90 43.92 2.90
2683 3653 4.536765 TGGAATCAAAGGAGCCCTTAATC 58.463 43.478 6.88 4.22 43.92 1.75
2685 3655 4.202673 ACTTGGAATCAAAGGAGCCCTTAA 60.203 41.667 2.05 0.54 43.92 1.85
2686 3656 3.333680 ACTTGGAATCAAAGGAGCCCTTA 59.666 43.478 2.05 0.00 43.92 2.69
2688 3658 1.713078 ACTTGGAATCAAAGGAGCCCT 59.287 47.619 2.05 0.00 33.87 5.19
2689 3659 2.222227 ACTTGGAATCAAAGGAGCCC 57.778 50.000 2.05 0.00 31.77 5.19
2690 3660 5.921962 AAATACTTGGAATCAAAGGAGCC 57.078 39.130 2.05 0.00 31.77 4.70
2691 3661 6.924111 TGAAAATACTTGGAATCAAAGGAGC 58.076 36.000 2.05 0.00 31.77 4.70
2693 3663 9.189156 CCTATGAAAATACTTGGAATCAAAGGA 57.811 33.333 2.05 0.00 31.77 3.36
2694 3664 7.922811 GCCTATGAAAATACTTGGAATCAAAGG 59.077 37.037 2.05 0.00 31.77 3.11
2695 3665 8.469200 TGCCTATGAAAATACTTGGAATCAAAG 58.531 33.333 0.00 0.00 31.77 2.77
2696 3666 8.359875 TGCCTATGAAAATACTTGGAATCAAA 57.640 30.769 0.00 0.00 31.77 2.69
2697 3667 7.953005 TGCCTATGAAAATACTTGGAATCAA 57.047 32.000 0.00 0.00 0.00 2.57
2698 3668 8.537728 AATGCCTATGAAAATACTTGGAATCA 57.462 30.769 0.00 0.00 0.00 2.57
2699 3669 9.822185 AAAATGCCTATGAAAATACTTGGAATC 57.178 29.630 0.00 0.00 0.00 2.52
2700 3670 9.603921 CAAAATGCCTATGAAAATACTTGGAAT 57.396 29.630 0.00 0.00 0.00 3.01
2701 3671 8.040132 CCAAAATGCCTATGAAAATACTTGGAA 58.960 33.333 0.00 0.00 32.03 3.53
2702 3672 7.398618 TCCAAAATGCCTATGAAAATACTTGGA 59.601 33.333 0.00 0.00 36.10 3.53
2703 3673 7.555087 TCCAAAATGCCTATGAAAATACTTGG 58.445 34.615 0.00 0.00 0.00 3.61
2704 3674 7.707893 CCTCCAAAATGCCTATGAAAATACTTG 59.292 37.037 0.00 0.00 0.00 3.16
2705 3675 7.619302 TCCTCCAAAATGCCTATGAAAATACTT 59.381 33.333 0.00 0.00 0.00 2.24
2706 3676 7.125391 TCCTCCAAAATGCCTATGAAAATACT 58.875 34.615 0.00 0.00 0.00 2.12
2707 3677 7.346751 TCCTCCAAAATGCCTATGAAAATAC 57.653 36.000 0.00 0.00 0.00 1.89
2708 3678 8.551682 AATCCTCCAAAATGCCTATGAAAATA 57.448 30.769 0.00 0.00 0.00 1.40
2709 3679 7.441903 AATCCTCCAAAATGCCTATGAAAAT 57.558 32.000 0.00 0.00 0.00 1.82
2710 3680 6.872585 AATCCTCCAAAATGCCTATGAAAA 57.127 33.333 0.00 0.00 0.00 2.29
2711 3681 7.353525 TCTAATCCTCCAAAATGCCTATGAAA 58.646 34.615 0.00 0.00 0.00 2.69
2712 3682 6.910191 TCTAATCCTCCAAAATGCCTATGAA 58.090 36.000 0.00 0.00 0.00 2.57
2713 3683 6.514012 TCTAATCCTCCAAAATGCCTATGA 57.486 37.500 0.00 0.00 0.00 2.15
2714 3684 7.587037 TTTCTAATCCTCCAAAATGCCTATG 57.413 36.000 0.00 0.00 0.00 2.23
2715 3685 8.788238 AATTTCTAATCCTCCAAAATGCCTAT 57.212 30.769 0.00 0.00 0.00 2.57
2716 3686 8.608185 AAATTTCTAATCCTCCAAAATGCCTA 57.392 30.769 0.00 0.00 0.00 3.93
2717 3687 7.500629 AAATTTCTAATCCTCCAAAATGCCT 57.499 32.000 0.00 0.00 0.00 4.75
2718 3688 9.317936 CTAAAATTTCTAATCCTCCAAAATGCC 57.682 33.333 0.00 0.00 0.00 4.40
2719 3689 9.317936 CCTAAAATTTCTAATCCTCCAAAATGC 57.682 33.333 0.00 0.00 0.00 3.56
2726 3696 9.534565 GCAAATTCCTAAAATTTCTAATCCTCC 57.465 33.333 0.00 0.00 0.00 4.30
2774 3744 8.233190 GTGAATCAAACAACCAACATTGAAAAA 58.767 29.630 0.00 0.00 35.62 1.94
2775 3745 7.388776 TGTGAATCAAACAACCAACATTGAAAA 59.611 29.630 0.00 0.00 35.62 2.29
2776 3746 6.875726 TGTGAATCAAACAACCAACATTGAAA 59.124 30.769 0.00 0.00 35.62 2.69
2777 3747 6.401394 TGTGAATCAAACAACCAACATTGAA 58.599 32.000 0.00 0.00 35.62 2.69
2778 3748 5.970592 TGTGAATCAAACAACCAACATTGA 58.029 33.333 0.00 0.00 36.35 2.57
2779 3749 5.234757 CCTGTGAATCAAACAACCAACATTG 59.765 40.000 0.00 0.00 35.59 2.82
2780 3750 5.128499 TCCTGTGAATCAAACAACCAACATT 59.872 36.000 0.00 0.00 0.00 2.71
2781 3751 4.648762 TCCTGTGAATCAAACAACCAACAT 59.351 37.500 0.00 0.00 0.00 2.71
2782 3752 4.019858 TCCTGTGAATCAAACAACCAACA 58.980 39.130 0.00 0.00 0.00 3.33
2783 3753 4.647424 TCCTGTGAATCAAACAACCAAC 57.353 40.909 0.00 0.00 0.00 3.77
2784 3754 5.362143 TCAATCCTGTGAATCAAACAACCAA 59.638 36.000 0.00 0.00 0.00 3.67
2785 3755 4.892345 TCAATCCTGTGAATCAAACAACCA 59.108 37.500 0.00 0.00 0.00 3.67
2786 3756 5.452078 TCAATCCTGTGAATCAAACAACC 57.548 39.130 0.00 0.00 0.00 3.77
2787 3757 5.691754 GGTTCAATCCTGTGAATCAAACAAC 59.308 40.000 0.00 0.00 39.61 3.32
2788 3758 5.221422 GGGTTCAATCCTGTGAATCAAACAA 60.221 40.000 1.04 0.00 39.90 2.83
2789 3759 4.280677 GGGTTCAATCCTGTGAATCAAACA 59.719 41.667 1.04 0.00 39.90 2.83
2790 3760 4.524328 AGGGTTCAATCCTGTGAATCAAAC 59.476 41.667 0.00 0.00 39.90 2.93
2791 3761 4.739793 AGGGTTCAATCCTGTGAATCAAA 58.260 39.130 0.00 0.00 39.90 2.69
2792 3762 4.387026 AGGGTTCAATCCTGTGAATCAA 57.613 40.909 0.00 0.00 39.90 2.57
2793 3763 5.715439 ATAGGGTTCAATCCTGTGAATCA 57.285 39.130 0.00 0.00 39.90 2.57
2794 3764 7.067496 TCTATAGGGTTCAATCCTGTGAATC 57.933 40.000 0.00 0.00 39.61 2.52
2795 3765 7.451731 TTCTATAGGGTTCAATCCTGTGAAT 57.548 36.000 0.00 0.00 39.61 2.57
2796 3766 6.884472 TTCTATAGGGTTCAATCCTGTGAA 57.116 37.500 0.00 0.00 35.92 3.18
2797 3767 7.451731 AATTCTATAGGGTTCAATCCTGTGA 57.548 36.000 0.00 0.00 35.92 3.58
2798 3768 8.525290 AAAATTCTATAGGGTTCAATCCTGTG 57.475 34.615 0.00 0.00 35.92 3.66
2847 3817 7.564660 AGTGGATGCTATAAATCCCATGAAAAA 59.435 33.333 10.31 0.00 42.63 1.94
2848 3818 7.068702 AGTGGATGCTATAAATCCCATGAAAA 58.931 34.615 10.31 0.00 42.63 2.29
2849 3819 6.613699 AGTGGATGCTATAAATCCCATGAAA 58.386 36.000 10.31 0.00 42.63 2.69
2850 3820 6.183361 TGAGTGGATGCTATAAATCCCATGAA 60.183 38.462 10.31 0.00 42.63 2.57
2851 3821 5.310331 TGAGTGGATGCTATAAATCCCATGA 59.690 40.000 10.31 0.00 42.63 3.07
2852 3822 5.563592 TGAGTGGATGCTATAAATCCCATG 58.436 41.667 10.31 0.00 42.63 3.66
2853 3823 5.848286 TGAGTGGATGCTATAAATCCCAT 57.152 39.130 10.31 1.58 42.63 4.00
2854 3824 5.645056 TTGAGTGGATGCTATAAATCCCA 57.355 39.130 10.31 0.00 42.63 4.37
2855 3825 6.239036 GGTTTTGAGTGGATGCTATAAATCCC 60.239 42.308 10.31 4.18 42.63 3.85
2856 3826 6.547510 AGGTTTTGAGTGGATGCTATAAATCC 59.452 38.462 7.04 7.04 43.44 3.01
2857 3827 7.500559 AGAGGTTTTGAGTGGATGCTATAAATC 59.499 37.037 0.00 0.00 0.00 2.17
2858 3828 7.349598 AGAGGTTTTGAGTGGATGCTATAAAT 58.650 34.615 0.00 0.00 0.00 1.40
2859 3829 6.721318 AGAGGTTTTGAGTGGATGCTATAAA 58.279 36.000 0.00 0.00 0.00 1.40
2860 3830 6.313519 AGAGGTTTTGAGTGGATGCTATAA 57.686 37.500 0.00 0.00 0.00 0.98
2861 3831 5.957771 AGAGGTTTTGAGTGGATGCTATA 57.042 39.130 0.00 0.00 0.00 1.31
2862 3832 4.851639 AGAGGTTTTGAGTGGATGCTAT 57.148 40.909 0.00 0.00 0.00 2.97
2863 3833 4.579869 GAAGAGGTTTTGAGTGGATGCTA 58.420 43.478 0.00 0.00 0.00 3.49
2864 3834 3.416156 GAAGAGGTTTTGAGTGGATGCT 58.584 45.455 0.00 0.00 0.00 3.79
2865 3835 2.160417 CGAAGAGGTTTTGAGTGGATGC 59.840 50.000 0.00 0.00 0.00 3.91
2866 3836 3.664107 TCGAAGAGGTTTTGAGTGGATG 58.336 45.455 0.00 0.00 0.00 3.51
2867 3837 4.351874 TTCGAAGAGGTTTTGAGTGGAT 57.648 40.909 0.00 0.00 38.43 3.41
2868 3838 3.830744 TTCGAAGAGGTTTTGAGTGGA 57.169 42.857 0.00 0.00 38.43 4.02
2869 3839 4.127171 TCTTTCGAAGAGGTTTTGAGTGG 58.873 43.478 0.00 0.00 38.43 4.00
2870 3840 5.734855 TTCTTTCGAAGAGGTTTTGAGTG 57.265 39.130 0.00 0.00 39.03 3.51
2871 3841 6.768381 AGAATTCTTTCGAAGAGGTTTTGAGT 59.232 34.615 0.88 0.00 39.03 3.41
2872 3842 7.195839 AGAATTCTTTCGAAGAGGTTTTGAG 57.804 36.000 0.88 0.00 39.03 3.02
2873 3843 7.568199 AAGAATTCTTTCGAAGAGGTTTTGA 57.432 32.000 15.11 0.00 39.03 2.69
2874 3844 7.702348 ACAAAGAATTCTTTCGAAGAGGTTTTG 59.298 33.333 26.87 15.73 43.72 2.44
2875 3845 7.772166 ACAAAGAATTCTTTCGAAGAGGTTTT 58.228 30.769 26.87 2.73 43.72 2.43
2876 3846 7.334844 ACAAAGAATTCTTTCGAAGAGGTTT 57.665 32.000 26.87 2.92 43.72 3.27
2877 3847 6.944234 ACAAAGAATTCTTTCGAAGAGGTT 57.056 33.333 26.87 3.42 43.72 3.50
2878 3848 6.944234 AACAAAGAATTCTTTCGAAGAGGT 57.056 33.333 26.87 17.91 43.72 3.85
2879 3849 8.634475 AAAAACAAAGAATTCTTTCGAAGAGG 57.366 30.769 26.87 17.35 43.72 3.69
2880 3850 8.746751 GGAAAAACAAAGAATTCTTTCGAAGAG 58.253 33.333 26.87 17.96 43.72 2.85
2881 3851 8.466798 AGGAAAAACAAAGAATTCTTTCGAAGA 58.533 29.630 26.87 0.00 43.72 2.87
2882 3852 8.634475 AGGAAAAACAAAGAATTCTTTCGAAG 57.366 30.769 26.87 18.88 43.72 3.79
2884 3854 9.677567 CATAGGAAAAACAAAGAATTCTTTCGA 57.322 29.630 26.87 12.86 43.72 3.71
2885 3855 9.677567 TCATAGGAAAAACAAAGAATTCTTTCG 57.322 29.630 26.87 22.75 43.72 3.46
2888 3858 9.428097 GCATCATAGGAAAAACAAAGAATTCTT 57.572 29.630 15.11 15.11 37.91 2.52
2889 3859 8.587608 TGCATCATAGGAAAAACAAAGAATTCT 58.412 29.630 0.88 0.88 0.00 2.40
2890 3860 8.761575 TGCATCATAGGAAAAACAAAGAATTC 57.238 30.769 0.00 0.00 0.00 2.17
2891 3861 8.992073 GTTGCATCATAGGAAAAACAAAGAATT 58.008 29.630 0.00 0.00 0.00 2.17
2892 3862 7.603784 GGTTGCATCATAGGAAAAACAAAGAAT 59.396 33.333 0.00 0.00 0.00 2.40
2893 3863 6.928492 GGTTGCATCATAGGAAAAACAAAGAA 59.072 34.615 0.00 0.00 0.00 2.52
2894 3864 6.041409 TGGTTGCATCATAGGAAAAACAAAGA 59.959 34.615 0.00 0.00 0.00 2.52
2895 3865 6.222389 TGGTTGCATCATAGGAAAAACAAAG 58.778 36.000 0.00 0.00 0.00 2.77
2896 3866 6.166984 TGGTTGCATCATAGGAAAAACAAA 57.833 33.333 0.00 0.00 0.00 2.83
2897 3867 5.798125 TGGTTGCATCATAGGAAAAACAA 57.202 34.783 0.00 0.00 0.00 2.83
2898 3868 5.798125 TTGGTTGCATCATAGGAAAAACA 57.202 34.783 0.00 0.00 0.00 2.83
2899 3869 5.988561 TGTTTGGTTGCATCATAGGAAAAAC 59.011 36.000 0.00 0.00 0.00 2.43
2900 3870 6.166984 TGTTTGGTTGCATCATAGGAAAAA 57.833 33.333 0.00 0.00 0.00 1.94
2901 3871 5.798125 TGTTTGGTTGCATCATAGGAAAA 57.202 34.783 0.00 0.00 0.00 2.29
2902 3872 5.798125 TTGTTTGGTTGCATCATAGGAAA 57.202 34.783 0.00 0.00 0.00 3.13
2903 3873 5.479724 TGATTGTTTGGTTGCATCATAGGAA 59.520 36.000 0.00 0.00 0.00 3.36
2904 3874 5.015515 TGATTGTTTGGTTGCATCATAGGA 58.984 37.500 0.00 0.00 0.00 2.94
2905 3875 5.327616 TGATTGTTTGGTTGCATCATAGG 57.672 39.130 0.00 0.00 0.00 2.57
2906 3876 7.655236 TTTTGATTGTTTGGTTGCATCATAG 57.345 32.000 0.00 0.00 0.00 2.23
2907 3877 8.618702 ATTTTTGATTGTTTGGTTGCATCATA 57.381 26.923 0.00 0.00 0.00 2.15
2908 3878 6.939132 TTTTTGATTGTTTGGTTGCATCAT 57.061 29.167 0.00 0.00 0.00 2.45
2909 3879 6.939132 ATTTTTGATTGTTTGGTTGCATCA 57.061 29.167 0.00 0.00 0.00 3.07
2910 3880 7.588488 CAGAATTTTTGATTGTTTGGTTGCATC 59.412 33.333 0.00 0.00 0.00 3.91
2911 3881 7.067251 ACAGAATTTTTGATTGTTTGGTTGCAT 59.933 29.630 0.00 0.00 0.00 3.96
2912 3882 6.373774 ACAGAATTTTTGATTGTTTGGTTGCA 59.626 30.769 0.00 0.00 0.00 4.08
2913 3883 6.784176 ACAGAATTTTTGATTGTTTGGTTGC 58.216 32.000 0.00 0.00 0.00 4.17
2914 3884 9.919348 CTTACAGAATTTTTGATTGTTTGGTTG 57.081 29.630 0.00 0.00 0.00 3.77
2915 3885 9.883142 TCTTACAGAATTTTTGATTGTTTGGTT 57.117 25.926 0.00 0.00 0.00 3.67
2926 3896 9.286946 GCTCATCTCAATCTTACAGAATTTTTG 57.713 33.333 0.00 0.00 0.00 2.44
2927 3897 9.017509 TGCTCATCTCAATCTTACAGAATTTTT 57.982 29.630 0.00 0.00 0.00 1.94
2928 3898 8.571461 TGCTCATCTCAATCTTACAGAATTTT 57.429 30.769 0.00 0.00 0.00 1.82
2929 3899 8.622157 CATGCTCATCTCAATCTTACAGAATTT 58.378 33.333 0.00 0.00 0.00 1.82
2930 3900 7.991460 TCATGCTCATCTCAATCTTACAGAATT 59.009 33.333 0.00 0.00 0.00 2.17
2931 3901 7.441760 GTCATGCTCATCTCAATCTTACAGAAT 59.558 37.037 0.00 0.00 0.00 2.40
2932 3902 6.760298 GTCATGCTCATCTCAATCTTACAGAA 59.240 38.462 0.00 0.00 0.00 3.02
2933 3903 6.127253 TGTCATGCTCATCTCAATCTTACAGA 60.127 38.462 0.00 0.00 0.00 3.41
2934 3904 6.047231 TGTCATGCTCATCTCAATCTTACAG 58.953 40.000 0.00 0.00 0.00 2.74
2935 3905 5.981174 TGTCATGCTCATCTCAATCTTACA 58.019 37.500 0.00 0.00 0.00 2.41
2936 3906 7.307870 GGAATGTCATGCTCATCTCAATCTTAC 60.308 40.741 4.24 0.00 0.00 2.34
2937 3907 6.709397 GGAATGTCATGCTCATCTCAATCTTA 59.291 38.462 4.24 0.00 0.00 2.10
2938 3908 5.531659 GGAATGTCATGCTCATCTCAATCTT 59.468 40.000 4.24 0.00 0.00 2.40
2939 3909 5.064558 GGAATGTCATGCTCATCTCAATCT 58.935 41.667 4.24 0.00 0.00 2.40
2940 3910 4.215827 GGGAATGTCATGCTCATCTCAATC 59.784 45.833 4.24 0.00 0.00 2.67
2941 3911 4.142790 GGGAATGTCATGCTCATCTCAAT 58.857 43.478 4.24 0.00 0.00 2.57
2942 3912 3.054213 TGGGAATGTCATGCTCATCTCAA 60.054 43.478 0.00 0.00 0.00 3.02
2943 3913 2.506644 TGGGAATGTCATGCTCATCTCA 59.493 45.455 0.00 0.00 0.00 3.27
2944 3914 3.139850 CTGGGAATGTCATGCTCATCTC 58.860 50.000 0.00 0.00 0.00 2.75
2945 3915 2.748798 GCTGGGAATGTCATGCTCATCT 60.749 50.000 0.00 0.00 0.00 2.90
2946 3916 1.607628 GCTGGGAATGTCATGCTCATC 59.392 52.381 0.00 0.00 0.00 2.92
2947 3917 1.688772 GCTGGGAATGTCATGCTCAT 58.311 50.000 0.00 0.00 0.00 2.90
2948 3918 0.394762 GGCTGGGAATGTCATGCTCA 60.395 55.000 0.00 0.00 0.00 4.26
2949 3919 0.106819 AGGCTGGGAATGTCATGCTC 60.107 55.000 0.00 0.00 0.00 4.26
2950 3920 1.216064 TAGGCTGGGAATGTCATGCT 58.784 50.000 0.00 0.00 0.00 3.79
2951 3921 1.884579 CATAGGCTGGGAATGTCATGC 59.115 52.381 0.00 0.00 0.00 4.06
2952 3922 3.219176 ACATAGGCTGGGAATGTCATG 57.781 47.619 0.00 0.00 0.00 3.07
2953 3923 3.959495 AACATAGGCTGGGAATGTCAT 57.041 42.857 0.00 0.00 32.80 3.06
2954 3924 3.737559 AAACATAGGCTGGGAATGTCA 57.262 42.857 0.00 0.00 32.80 3.58
2955 3925 3.381590 GGAAAACATAGGCTGGGAATGTC 59.618 47.826 0.00 0.00 32.80 3.06
2956 3926 3.011708 AGGAAAACATAGGCTGGGAATGT 59.988 43.478 0.00 0.00 35.40 2.71
2957 3927 3.635591 AGGAAAACATAGGCTGGGAATG 58.364 45.455 0.00 0.00 0.00 2.67
2958 3928 5.669798 ATAGGAAAACATAGGCTGGGAAT 57.330 39.130 0.00 0.00 0.00 3.01
2959 3929 5.445964 GAATAGGAAAACATAGGCTGGGAA 58.554 41.667 0.00 0.00 0.00 3.97
2960 3930 4.141251 GGAATAGGAAAACATAGGCTGGGA 60.141 45.833 0.00 0.00 0.00 4.37
2961 3931 4.145052 GGAATAGGAAAACATAGGCTGGG 58.855 47.826 0.00 0.00 0.00 4.45
2962 3932 4.145052 GGGAATAGGAAAACATAGGCTGG 58.855 47.826 0.00 0.00 0.00 4.85
2963 3933 3.815401 CGGGAATAGGAAAACATAGGCTG 59.185 47.826 0.00 0.00 0.00 4.85
2964 3934 3.747708 GCGGGAATAGGAAAACATAGGCT 60.748 47.826 0.00 0.00 0.00 4.58
2965 3935 2.552743 GCGGGAATAGGAAAACATAGGC 59.447 50.000 0.00 0.00 0.00 3.93
2966 3936 2.806244 CGCGGGAATAGGAAAACATAGG 59.194 50.000 0.00 0.00 0.00 2.57
2967 3937 2.223377 GCGCGGGAATAGGAAAACATAG 59.777 50.000 8.83 0.00 0.00 2.23
2968 3938 2.158871 AGCGCGGGAATAGGAAAACATA 60.159 45.455 8.83 0.00 0.00 2.29
2969 3939 1.021968 GCGCGGGAATAGGAAAACAT 58.978 50.000 8.83 0.00 0.00 2.71
2970 3940 0.035820 AGCGCGGGAATAGGAAAACA 60.036 50.000 8.83 0.00 0.00 2.83
2971 3941 1.092348 AAGCGCGGGAATAGGAAAAC 58.908 50.000 8.83 0.00 0.00 2.43
2972 3942 1.828979 AAAGCGCGGGAATAGGAAAA 58.171 45.000 8.83 0.00 0.00 2.29
2973 3943 1.828979 AAAAGCGCGGGAATAGGAAA 58.171 45.000 8.83 0.00 0.00 3.13
2974 3944 2.695127 TAAAAGCGCGGGAATAGGAA 57.305 45.000 8.83 0.00 0.00 3.36
2975 3945 2.695127 TTAAAAGCGCGGGAATAGGA 57.305 45.000 8.83 0.00 0.00 2.94
2976 3946 3.768468 TTTTAAAAGCGCGGGAATAGG 57.232 42.857 8.83 0.00 0.00 2.57
2977 3947 4.287720 GGATTTTAAAAGCGCGGGAATAG 58.712 43.478 8.83 0.00 0.00 1.73
2978 3948 3.067040 GGGATTTTAAAAGCGCGGGAATA 59.933 43.478 16.04 0.00 0.00 1.75
2979 3949 2.159156 GGGATTTTAAAAGCGCGGGAAT 60.159 45.455 16.04 0.00 0.00 3.01
2980 3950 1.202817 GGGATTTTAAAAGCGCGGGAA 59.797 47.619 16.04 0.00 0.00 3.97
2981 3951 0.812549 GGGATTTTAAAAGCGCGGGA 59.187 50.000 16.04 0.00 0.00 5.14
2982 3952 3.339061 GGGATTTTAAAAGCGCGGG 57.661 52.632 16.04 0.00 0.00 6.13
2985 3955 2.622546 TCACGGGATTTTAAAAGCGC 57.377 45.000 19.81 19.81 34.42 5.92
2986 3956 7.539366 TCTTTTATTCACGGGATTTTAAAAGCG 59.461 33.333 21.49 9.81 34.88 4.68
2987 3957 8.751302 TCTTTTATTCACGGGATTTTAAAAGC 57.249 30.769 21.49 7.67 34.88 3.51
2989 3959 9.198837 GCTTCTTTTATTCACGGGATTTTAAAA 57.801 29.630 2.51 2.51 0.00 1.52
2990 3960 7.815549 GGCTTCTTTTATTCACGGGATTTTAAA 59.184 33.333 0.00 0.00 0.00 1.52
2991 3961 7.317390 GGCTTCTTTTATTCACGGGATTTTAA 58.683 34.615 0.00 0.00 0.00 1.52
2992 3962 6.127563 GGGCTTCTTTTATTCACGGGATTTTA 60.128 38.462 0.00 0.00 0.00 1.52
2993 3963 5.337250 GGGCTTCTTTTATTCACGGGATTTT 60.337 40.000 0.00 0.00 0.00 1.82
2994 3964 4.159693 GGGCTTCTTTTATTCACGGGATTT 59.840 41.667 0.00 0.00 0.00 2.17
2995 3965 3.699538 GGGCTTCTTTTATTCACGGGATT 59.300 43.478 0.00 0.00 0.00 3.01
2996 3966 3.053619 AGGGCTTCTTTTATTCACGGGAT 60.054 43.478 0.00 0.00 0.00 3.85
2997 3967 2.307686 AGGGCTTCTTTTATTCACGGGA 59.692 45.455 0.00 0.00 0.00 5.14
2998 3968 2.723273 AGGGCTTCTTTTATTCACGGG 58.277 47.619 0.00 0.00 0.00 5.28
2999 3969 6.094881 TGAATTAGGGCTTCTTTTATTCACGG 59.905 38.462 0.00 0.00 29.66 4.94
3000 3970 7.065803 TCTGAATTAGGGCTTCTTTTATTCACG 59.934 37.037 0.00 0.00 30.59 4.35
3001 3971 8.281212 TCTGAATTAGGGCTTCTTTTATTCAC 57.719 34.615 0.00 0.00 30.59 3.18
3002 3972 8.906867 CATCTGAATTAGGGCTTCTTTTATTCA 58.093 33.333 0.00 0.00 31.74 2.57
3003 3973 9.125026 TCATCTGAATTAGGGCTTCTTTTATTC 57.875 33.333 0.00 0.00 0.00 1.75
3004 3974 9.129532 CTCATCTGAATTAGGGCTTCTTTTATT 57.870 33.333 0.00 0.00 0.00 1.40
3005 3975 7.230309 GCTCATCTGAATTAGGGCTTCTTTTAT 59.770 37.037 0.00 0.00 0.00 1.40
3006 3976 6.543831 GCTCATCTGAATTAGGGCTTCTTTTA 59.456 38.462 0.00 0.00 0.00 1.52
3007 3977 5.359292 GCTCATCTGAATTAGGGCTTCTTTT 59.641 40.000 0.00 0.00 0.00 2.27
3008 3978 4.886489 GCTCATCTGAATTAGGGCTTCTTT 59.114 41.667 0.00 0.00 0.00 2.52
3009 3979 4.080129 TGCTCATCTGAATTAGGGCTTCTT 60.080 41.667 0.00 0.00 0.00 2.52
3010 3980 3.457380 TGCTCATCTGAATTAGGGCTTCT 59.543 43.478 0.00 0.00 0.00 2.85
3011 3981 3.813443 TGCTCATCTGAATTAGGGCTTC 58.187 45.455 0.00 0.00 0.00 3.86
3012 3982 3.939740 TGCTCATCTGAATTAGGGCTT 57.060 42.857 0.00 0.00 0.00 4.35
3013 3983 3.939740 TTGCTCATCTGAATTAGGGCT 57.060 42.857 0.00 0.00 0.00 5.19
3014 3984 5.287226 CAAATTGCTCATCTGAATTAGGGC 58.713 41.667 0.00 0.00 0.00 5.19
3015 3985 5.221382 CCCAAATTGCTCATCTGAATTAGGG 60.221 44.000 0.00 0.00 0.00 3.53
3016 3986 5.595542 TCCCAAATTGCTCATCTGAATTAGG 59.404 40.000 0.00 0.00 0.00 2.69
3017 3987 6.704289 TCCCAAATTGCTCATCTGAATTAG 57.296 37.500 0.00 0.00 0.00 1.73
3018 3988 6.664816 AGTTCCCAAATTGCTCATCTGAATTA 59.335 34.615 0.00 0.00 0.00 1.40
3025 3995 3.507233 TCACAGTTCCCAAATTGCTCATC 59.493 43.478 0.00 0.00 0.00 2.92
3033 4003 5.079643 AGCAGTAAATCACAGTTCCCAAAT 58.920 37.500 0.00 0.00 0.00 2.32
3036 4006 3.788227 AGCAGTAAATCACAGTTCCCA 57.212 42.857 0.00 0.00 0.00 4.37
3039 4009 6.074005 CGAAAGAAGCAGTAAATCACAGTTC 58.926 40.000 0.00 0.00 0.00 3.01
3051 4021 3.808174 GTGTTTCCTACGAAAGAAGCAGT 59.192 43.478 0.00 0.00 38.66 4.40
3052 4022 4.058817 AGTGTTTCCTACGAAAGAAGCAG 58.941 43.478 0.00 0.00 38.66 4.24
3062 4032 5.696724 ACAGATTTTCAGAGTGTTTCCTACG 59.303 40.000 0.00 0.00 0.00 3.51
3063 4033 7.012421 ACAACAGATTTTCAGAGTGTTTCCTAC 59.988 37.037 0.00 0.00 0.00 3.18
3127 4105 7.264294 AGAAATTCTTCCAGTGTTCTATCCT 57.736 36.000 0.00 0.00 31.28 3.24
3128 4106 6.540551 GGAGAAATTCTTCCAGTGTTCTATCC 59.459 42.308 0.00 0.00 31.28 2.59
3129 4107 7.334858 AGGAGAAATTCTTCCAGTGTTCTATC 58.665 38.462 11.92 0.00 31.28 2.08
3130 4108 7.264294 AGGAGAAATTCTTCCAGTGTTCTAT 57.736 36.000 11.92 0.00 31.28 1.98
3137 4115 5.492524 TCCCAATAGGAGAAATTCTTCCAGT 59.507 40.000 11.92 0.00 40.93 4.00
3181 4159 3.261951 CGCCATTACACGCCTCCG 61.262 66.667 0.00 0.00 41.14 4.63
3194 4172 0.610785 CCTTTTCTTAAGGGCCGCCA 60.611 55.000 12.58 0.00 33.79 5.69
3205 4183 2.974794 AGCATTTGGGCTTCCTTTTCTT 59.025 40.909 0.00 0.00 42.71 2.52
3226 4204 3.587061 ACCACAATCTATCTGGACCACAA 59.413 43.478 0.00 0.00 0.00 3.33
3230 4208 3.458189 CGAACCACAATCTATCTGGACC 58.542 50.000 0.00 0.00 0.00 4.46
3236 4214 5.351465 TGAAGAAAGCGAACCACAATCTATC 59.649 40.000 0.00 0.00 0.00 2.08
3249 4227 2.832129 ACCTAGGTGATGAAGAAAGCGA 59.168 45.455 15.42 0.00 0.00 4.93
3251 4229 5.105310 TGAGTACCTAGGTGATGAAGAAAGC 60.105 44.000 25.33 0.00 0.00 3.51
3263 4241 4.295201 TGCAATACCATGAGTACCTAGGT 58.705 43.478 20.57 20.57 32.46 3.08
3275 4253 8.796475 GTGGATATAAGTTTGATGCAATACCAT 58.204 33.333 0.00 0.00 0.00 3.55
3290 4268 6.721318 ACAACATTGTGAGGTGGATATAAGT 58.279 36.000 0.00 0.00 40.49 2.24
3319 4297 6.928348 TTCATCTAACCGGTGACCATATAT 57.072 37.500 8.52 0.00 0.00 0.86
3361 4339 8.861086 AGTAGACGATCACATCCTTATAAATGT 58.139 33.333 0.00 0.00 36.56 2.71
3370 4348 7.815068 GCATAATAAAGTAGACGATCACATCCT 59.185 37.037 0.00 0.00 0.00 3.24
3376 4354 5.856986 GCGAGCATAATAAAGTAGACGATCA 59.143 40.000 0.00 0.00 0.00 2.92
3378 4356 5.162075 GGCGAGCATAATAAAGTAGACGAT 58.838 41.667 0.00 0.00 0.00 3.73
3405 4383 4.689612 AACACCATGTCAACTCTACAGT 57.310 40.909 0.00 0.00 0.00 3.55
3430 4410 5.708948 TGCAAAGGAGATGAATTTTAACCG 58.291 37.500 0.00 0.00 0.00 4.44
3470 4450 2.103263 ACACAAGACCACTTCTGGAGAC 59.897 50.000 0.00 0.00 40.55 3.36
3471 4451 2.398588 ACACAAGACCACTTCTGGAGA 58.601 47.619 0.00 0.00 40.55 3.71
3472 4452 2.918712 ACACAAGACCACTTCTGGAG 57.081 50.000 0.00 0.00 40.55 3.86
3474 4454 3.469008 TGTACACAAGACCACTTCTGG 57.531 47.619 0.00 0.00 44.26 3.86
3475 4455 5.056480 TCATTGTACACAAGACCACTTCTG 58.944 41.667 0.00 0.00 39.47 3.02
3476 4456 5.290493 TCATTGTACACAAGACCACTTCT 57.710 39.130 0.00 0.00 39.47 2.85
3477 4457 6.373779 CAATCATTGTACACAAGACCACTTC 58.626 40.000 0.00 0.00 39.47 3.01
3478 4458 5.241506 CCAATCATTGTACACAAGACCACTT 59.758 40.000 0.00 0.00 39.47 3.16
3480 4460 4.759693 TCCAATCATTGTACACAAGACCAC 59.240 41.667 0.00 0.00 39.47 4.16
3481 4461 4.979335 TCCAATCATTGTACACAAGACCA 58.021 39.130 0.00 0.00 39.47 4.02
3483 4463 6.312399 TGTTCCAATCATTGTACACAAGAC 57.688 37.500 0.00 0.00 39.47 3.01
3484 4464 6.128309 CGATGTTCCAATCATTGTACACAAGA 60.128 38.462 0.00 0.00 39.47 3.02
3485 4465 6.023435 CGATGTTCCAATCATTGTACACAAG 58.977 40.000 0.00 0.00 39.47 3.16
3487 4467 4.394610 CCGATGTTCCAATCATTGTACACA 59.605 41.667 0.00 1.46 0.00 3.72
3488 4468 4.730613 GCCGATGTTCCAATCATTGTACAC 60.731 45.833 0.00 0.00 0.00 2.90
3489 4469 3.376859 GCCGATGTTCCAATCATTGTACA 59.623 43.478 5.35 5.35 0.00 2.90
3493 4475 2.684374 TCAGCCGATGTTCCAATCATTG 59.316 45.455 0.00 0.00 0.00 2.82
3496 4478 2.291365 CATCAGCCGATGTTCCAATCA 58.709 47.619 1.47 0.00 43.52 2.57
3512 4494 1.098869 ACACACCGCAACAAACATCA 58.901 45.000 0.00 0.00 0.00 3.07
3513 4495 3.233578 CATACACACCGCAACAAACATC 58.766 45.455 0.00 0.00 0.00 3.06
3514 4496 2.606795 GCATACACACCGCAACAAACAT 60.607 45.455 0.00 0.00 0.00 2.71
3520 4502 1.984990 CAAATGCATACACACCGCAAC 59.015 47.619 0.00 0.00 39.48 4.17
3533 4515 0.537143 AACCGTCTGCTCCAAATGCA 60.537 50.000 0.00 0.00 38.81 3.96
3552 4534 6.381498 TCTATGTTGGGTGAAAACATCCTA 57.619 37.500 5.14 0.00 43.11 2.94
3563 4545 3.245518 TGTCGTCATCTATGTTGGGTG 57.754 47.619 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.