Multiple sequence alignment - TraesCS1A01G274300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G274300 chr1A 100.000 2623 0 0 1 2623 468600224 468597602 0.000000e+00 4844.0
1 TraesCS1A01G274300 chr1A 86.231 719 69 21 732 1440 400975633 400974935 0.000000e+00 752.0
2 TraesCS1A01G274300 chr1A 82.900 269 32 13 1337 1595 400972926 400972662 2.030000e-56 230.0
3 TraesCS1A01G274300 chr1D 93.076 1112 57 17 576 1682 369926377 369925281 0.000000e+00 1609.0
4 TraesCS1A01G274300 chr1D 91.111 810 52 12 1813 2617 369924917 369924123 0.000000e+00 1079.0
5 TraesCS1A01G274300 chr1D 86.769 718 71 19 731 1440 321705239 321704538 0.000000e+00 778.0
6 TraesCS1A01G274300 chr1D 85.494 779 73 33 723 1483 321640374 321641130 0.000000e+00 776.0
7 TraesCS1A01G274300 chr1D 92.383 407 29 2 2195 2599 368326976 368326570 1.750000e-161 579.0
8 TraesCS1A01G274300 chr1D 89.535 172 11 3 2040 2211 368332540 368332376 7.360000e-51 211.0
9 TraesCS1A01G274300 chr1B 92.096 835 42 18 909 1733 492369155 492368335 0.000000e+00 1155.0
10 TraesCS1A01G274300 chr1B 91.071 672 44 6 1812 2482 492367795 492367139 0.000000e+00 894.0
11 TraesCS1A01G274300 chr1B 96.008 476 12 6 970 1440 434409023 434409496 0.000000e+00 767.0
12 TraesCS1A01G274300 chr1B 95.789 475 15 5 970 1440 434423256 434422783 0.000000e+00 761.0
13 TraesCS1A01G274300 chr1B 83.121 314 37 12 1337 1638 434420678 434420369 3.330000e-69 272.0
14 TraesCS1A01G274300 chr1B 93.590 156 7 2 2470 2623 492366907 492366753 2.030000e-56 230.0
15 TraesCS1A01G274300 chr4D 82.999 947 95 48 732 1638 444176988 444177908 0.000000e+00 797.0
16 TraesCS1A01G274300 chr4A 82.788 947 88 54 734 1638 23611515 23610602 0.000000e+00 776.0
17 TraesCS1A01G274300 chr7D 78.261 115 20 4 731 842 58768134 58768246 4.680000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G274300 chr1A 468597602 468600224 2622 True 4844.000000 4844 100.000000 1 2623 1 chr1A.!!$R1 2622
1 TraesCS1A01G274300 chr1A 400972662 400975633 2971 True 491.000000 752 84.565500 732 1595 2 chr1A.!!$R2 863
2 TraesCS1A01G274300 chr1D 369924123 369926377 2254 True 1344.000000 1609 92.093500 576 2617 2 chr1D.!!$R4 2041
3 TraesCS1A01G274300 chr1D 321704538 321705239 701 True 778.000000 778 86.769000 731 1440 1 chr1D.!!$R1 709
4 TraesCS1A01G274300 chr1D 321640374 321641130 756 False 776.000000 776 85.494000 723 1483 1 chr1D.!!$F1 760
5 TraesCS1A01G274300 chr1B 492366753 492369155 2402 True 759.666667 1155 92.252333 909 2623 3 chr1B.!!$R2 1714
6 TraesCS1A01G274300 chr1B 434420369 434423256 2887 True 516.500000 761 89.455000 970 1638 2 chr1B.!!$R1 668
7 TraesCS1A01G274300 chr4D 444176988 444177908 920 False 797.000000 797 82.999000 732 1638 1 chr4D.!!$F1 906
8 TraesCS1A01G274300 chr4A 23610602 23611515 913 True 776.000000 776 82.788000 734 1638 1 chr4A.!!$R1 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 523 0.035439 AGCCGTATTGTGTGGGGAAG 60.035 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1657 3999 0.389817 TTGAGGCAAGATCACGTCGG 60.39 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.777865 TGAATTTGTGGTTGTTTTTGTATTCA 57.222 26.923 0.00 0.00 0.00 2.57
37 38 9.388506 TGAATTTGTGGTTGTTTTTGTATTCAT 57.611 25.926 0.00 0.00 0.00 2.57
38 39 9.649024 GAATTTGTGGTTGTTTTTGTATTCATG 57.351 29.630 0.00 0.00 0.00 3.07
39 40 8.954950 ATTTGTGGTTGTTTTTGTATTCATGA 57.045 26.923 0.00 0.00 0.00 3.07
40 41 8.777865 TTTGTGGTTGTTTTTGTATTCATGAA 57.222 26.923 11.26 11.26 0.00 2.57
41 42 8.954950 TTGTGGTTGTTTTTGTATTCATGAAT 57.045 26.923 23.75 23.75 34.93 2.57
70 71 8.961294 ATTCAAATCCACAAACATTTTCAAGA 57.039 26.923 0.00 0.00 0.00 3.02
71 72 8.961294 TTCAAATCCACAAACATTTTCAAGAT 57.039 26.923 0.00 0.00 0.00 2.40
72 73 8.592105 TCAAATCCACAAACATTTTCAAGATC 57.408 30.769 0.00 0.00 0.00 2.75
73 74 7.381948 TCAAATCCACAAACATTTTCAAGATCG 59.618 33.333 0.00 0.00 0.00 3.69
74 75 5.766150 TCCACAAACATTTTCAAGATCGT 57.234 34.783 0.00 0.00 0.00 3.73
75 76 5.518812 TCCACAAACATTTTCAAGATCGTG 58.481 37.500 1.76 1.76 0.00 4.35
76 77 5.067153 TCCACAAACATTTTCAAGATCGTGT 59.933 36.000 8.54 0.00 0.00 4.49
77 78 6.261158 TCCACAAACATTTTCAAGATCGTGTA 59.739 34.615 8.54 0.00 0.00 2.90
78 79 6.359617 CCACAAACATTTTCAAGATCGTGTAC 59.640 38.462 8.54 0.00 0.00 2.90
79 80 6.909895 CACAAACATTTTCAAGATCGTGTACA 59.090 34.615 8.54 0.00 0.00 2.90
80 81 7.591057 CACAAACATTTTCAAGATCGTGTACAT 59.409 33.333 8.54 0.00 0.00 2.29
81 82 8.134895 ACAAACATTTTCAAGATCGTGTACATT 58.865 29.630 8.54 0.00 0.00 2.71
82 83 8.967218 CAAACATTTTCAAGATCGTGTACATTT 58.033 29.630 8.54 1.73 0.00 2.32
85 86 9.988350 ACATTTTCAAGATCGTGTACATTTATC 57.012 29.630 8.54 3.00 0.00 1.75
86 87 9.986833 CATTTTCAAGATCGTGTACATTTATCA 57.013 29.630 8.54 0.00 0.00 2.15
92 93 9.986833 CAAGATCGTGTACATTTATCAAATTCA 57.013 29.630 0.00 0.00 0.00 2.57
97 98 9.767684 TCGTGTACATTTATCAAATTCATGAAC 57.232 29.630 11.07 0.00 32.06 3.18
98 99 9.553418 CGTGTACATTTATCAAATTCATGAACA 57.447 29.630 11.07 0.00 32.06 3.18
113 114 7.448588 TTCATGAACATTTTTCAAAGTCACG 57.551 32.000 3.38 0.00 31.55 4.35
114 115 6.790282 TCATGAACATTTTTCAAAGTCACGA 58.210 32.000 0.00 0.00 31.55 4.35
115 116 7.424803 TCATGAACATTTTTCAAAGTCACGAT 58.575 30.769 0.00 0.00 31.55 3.73
116 117 7.591057 TCATGAACATTTTTCAAAGTCACGATC 59.409 33.333 0.00 0.00 31.55 3.69
117 118 6.790282 TGAACATTTTTCAAAGTCACGATCA 58.210 32.000 0.00 0.00 0.00 2.92
118 119 7.424803 TGAACATTTTTCAAAGTCACGATCAT 58.575 30.769 0.00 0.00 0.00 2.45
119 120 7.920151 TGAACATTTTTCAAAGTCACGATCATT 59.080 29.630 0.00 0.00 0.00 2.57
120 121 8.647143 AACATTTTTCAAAGTCACGATCATTT 57.353 26.923 0.00 0.00 0.00 2.32
121 122 8.647143 ACATTTTTCAAAGTCACGATCATTTT 57.353 26.923 0.00 0.00 0.00 1.82
122 123 9.097257 ACATTTTTCAAAGTCACGATCATTTTT 57.903 25.926 0.00 0.00 0.00 1.94
201 202 7.875316 TTTTTGAATTCAAGAACGTGTTCAA 57.125 28.000 19.64 5.86 41.84 2.69
202 203 8.472683 TTTTTGAATTCAAGAACGTGTTCAAT 57.527 26.923 19.64 3.74 41.84 2.57
203 204 8.472683 TTTTGAATTCAAGAACGTGTTCAATT 57.527 26.923 19.64 11.12 41.84 2.32
204 205 8.472683 TTTGAATTCAAGAACGTGTTCAATTT 57.527 26.923 19.64 0.00 41.84 1.82
205 206 7.678194 TGAATTCAAGAACGTGTTCAATTTC 57.322 32.000 14.61 10.92 41.84 2.17
206 207 7.254137 TGAATTCAAGAACGTGTTCAATTTCA 58.746 30.769 14.61 12.74 41.84 2.69
207 208 7.920151 TGAATTCAAGAACGTGTTCAATTTCAT 59.080 29.630 14.61 0.00 41.84 2.57
208 209 7.627585 ATTCAAGAACGTGTTCAATTTCATG 57.372 32.000 14.61 0.00 41.84 3.07
209 210 6.370433 TCAAGAACGTGTTCAATTTCATGA 57.630 33.333 14.61 0.00 41.84 3.07
210 211 6.790282 TCAAGAACGTGTTCAATTTCATGAA 58.210 32.000 14.61 3.38 41.84 2.57
265 266 9.566530 TGTTAATATCCGTTGATTTTGTGATTG 57.433 29.630 0.00 0.00 32.18 2.67
266 267 9.019764 GTTAATATCCGTTGATTTTGTGATTGG 57.980 33.333 0.00 0.00 32.18 3.16
267 268 6.773976 ATATCCGTTGATTTTGTGATTGGT 57.226 33.333 0.00 0.00 32.18 3.67
268 269 4.927978 TCCGTTGATTTTGTGATTGGTT 57.072 36.364 0.00 0.00 0.00 3.67
269 270 5.269505 TCCGTTGATTTTGTGATTGGTTT 57.730 34.783 0.00 0.00 0.00 3.27
270 271 5.285651 TCCGTTGATTTTGTGATTGGTTTC 58.714 37.500 0.00 0.00 0.00 2.78
271 272 5.068460 TCCGTTGATTTTGTGATTGGTTTCT 59.932 36.000 0.00 0.00 0.00 2.52
272 273 5.402270 CCGTTGATTTTGTGATTGGTTTCTC 59.598 40.000 0.00 0.00 0.00 2.87
273 274 5.976534 CGTTGATTTTGTGATTGGTTTCTCA 59.023 36.000 0.00 0.00 0.00 3.27
274 275 6.142798 CGTTGATTTTGTGATTGGTTTCTCAG 59.857 38.462 0.00 0.00 0.00 3.35
275 276 6.957920 TGATTTTGTGATTGGTTTCTCAGA 57.042 33.333 0.00 0.00 0.00 3.27
276 277 7.345422 TGATTTTGTGATTGGTTTCTCAGAA 57.655 32.000 0.00 0.00 0.00 3.02
277 278 7.954835 TGATTTTGTGATTGGTTTCTCAGAAT 58.045 30.769 0.00 0.00 30.93 2.40
278 279 9.076781 TGATTTTGTGATTGGTTTCTCAGAATA 57.923 29.630 0.00 0.00 29.42 1.75
279 280 9.346725 GATTTTGTGATTGGTTTCTCAGAATAC 57.653 33.333 0.00 0.00 29.42 1.89
280 281 7.815840 TTTGTGATTGGTTTCTCAGAATACA 57.184 32.000 0.00 0.00 0.00 2.29
281 282 7.439157 TTGTGATTGGTTTCTCAGAATACAG 57.561 36.000 0.00 0.00 0.00 2.74
282 283 6.533730 TGTGATTGGTTTCTCAGAATACAGT 58.466 36.000 0.00 0.00 0.00 3.55
283 284 6.998074 TGTGATTGGTTTCTCAGAATACAGTT 59.002 34.615 0.00 0.00 0.00 3.16
284 285 7.502226 TGTGATTGGTTTCTCAGAATACAGTTT 59.498 33.333 0.00 0.00 0.00 2.66
285 286 8.999431 GTGATTGGTTTCTCAGAATACAGTTTA 58.001 33.333 0.00 0.00 0.00 2.01
286 287 9.567776 TGATTGGTTTCTCAGAATACAGTTTAA 57.432 29.630 0.00 0.00 0.00 1.52
316 317 8.785329 AAAAATCTCTCAATCCTAACAGACTC 57.215 34.615 0.00 0.00 0.00 3.36
317 318 5.766150 ATCTCTCAATCCTAACAGACTCG 57.234 43.478 0.00 0.00 0.00 4.18
318 319 4.844884 TCTCTCAATCCTAACAGACTCGA 58.155 43.478 0.00 0.00 0.00 4.04
319 320 4.878971 TCTCTCAATCCTAACAGACTCGAG 59.121 45.833 11.84 11.84 0.00 4.04
320 321 3.378742 TCTCAATCCTAACAGACTCGAGC 59.621 47.826 13.61 5.49 0.00 5.03
321 322 2.097629 TCAATCCTAACAGACTCGAGCG 59.902 50.000 13.61 3.76 0.00 5.03
322 323 2.039818 ATCCTAACAGACTCGAGCGA 57.960 50.000 13.61 0.00 0.00 4.93
323 324 2.039818 TCCTAACAGACTCGAGCGAT 57.960 50.000 13.61 0.00 0.00 4.58
324 325 1.671328 TCCTAACAGACTCGAGCGATG 59.329 52.381 13.61 11.30 0.00 3.84
325 326 1.471964 CTAACAGACTCGAGCGATGC 58.528 55.000 13.61 0.00 0.00 3.91
326 327 1.064803 CTAACAGACTCGAGCGATGCT 59.935 52.381 13.61 2.86 43.88 3.79
337 338 2.659897 CGATGCTCGCTACTGGCC 60.660 66.667 0.00 0.00 37.74 5.36
338 339 2.659897 GATGCTCGCTACTGGCCG 60.660 66.667 0.00 0.00 37.74 6.13
339 340 4.227134 ATGCTCGCTACTGGCCGG 62.227 66.667 11.02 11.02 37.74 6.13
341 342 4.874977 GCTCGCTACTGGCCGGTC 62.875 72.222 23.73 6.95 37.74 4.79
342 343 4.554363 CTCGCTACTGGCCGGTCG 62.554 72.222 23.73 20.04 37.74 4.79
353 354 4.169271 CCGGTCGGCCTATGTAGA 57.831 61.111 3.66 0.00 0.00 2.59
354 355 1.957562 CCGGTCGGCCTATGTAGAG 59.042 63.158 3.66 0.00 0.00 2.43
355 356 0.822532 CCGGTCGGCCTATGTAGAGT 60.823 60.000 3.66 0.00 0.00 3.24
356 357 1.030457 CGGTCGGCCTATGTAGAGTT 58.970 55.000 3.66 0.00 0.00 3.01
357 358 1.269102 CGGTCGGCCTATGTAGAGTTG 60.269 57.143 3.66 0.00 0.00 3.16
358 359 1.755380 GGTCGGCCTATGTAGAGTTGT 59.245 52.381 0.00 0.00 0.00 3.32
359 360 2.481449 GGTCGGCCTATGTAGAGTTGTG 60.481 54.545 0.00 0.00 0.00 3.33
360 361 2.165845 GTCGGCCTATGTAGAGTTGTGT 59.834 50.000 0.00 0.00 0.00 3.72
361 362 2.165641 TCGGCCTATGTAGAGTTGTGTG 59.834 50.000 0.00 0.00 0.00 3.82
362 363 2.094182 CGGCCTATGTAGAGTTGTGTGT 60.094 50.000 0.00 0.00 0.00 3.72
363 364 3.616560 CGGCCTATGTAGAGTTGTGTGTT 60.617 47.826 0.00 0.00 0.00 3.32
364 365 3.933332 GGCCTATGTAGAGTTGTGTGTTC 59.067 47.826 0.00 0.00 0.00 3.18
365 366 3.612860 GCCTATGTAGAGTTGTGTGTTCG 59.387 47.826 0.00 0.00 0.00 3.95
366 367 3.612860 CCTATGTAGAGTTGTGTGTTCGC 59.387 47.826 0.00 0.00 0.00 4.70
367 368 1.860676 TGTAGAGTTGTGTGTTCGCC 58.139 50.000 0.00 0.00 0.00 5.54
368 369 1.411246 TGTAGAGTTGTGTGTTCGCCT 59.589 47.619 0.00 0.00 0.00 5.52
369 370 2.624364 TGTAGAGTTGTGTGTTCGCCTA 59.376 45.455 0.00 0.00 0.00 3.93
370 371 2.150397 AGAGTTGTGTGTTCGCCTAC 57.850 50.000 0.00 0.00 0.00 3.18
371 372 1.145803 GAGTTGTGTGTTCGCCTACC 58.854 55.000 0.00 0.00 0.00 3.18
372 373 0.250166 AGTTGTGTGTTCGCCTACCC 60.250 55.000 0.00 0.00 0.00 3.69
373 374 1.301087 TTGTGTGTTCGCCTACCCG 60.301 57.895 0.00 0.00 0.00 5.28
374 375 1.746322 TTGTGTGTTCGCCTACCCGA 61.746 55.000 0.00 0.00 35.09 5.14
375 376 1.445582 GTGTGTTCGCCTACCCGAG 60.446 63.158 0.00 0.00 38.60 4.63
376 377 2.508663 GTGTTCGCCTACCCGAGC 60.509 66.667 0.00 0.00 38.60 5.03
382 383 3.755628 GCCTACCCGAGCGACACA 61.756 66.667 0.00 0.00 0.00 3.72
383 384 2.967397 CCTACCCGAGCGACACAA 59.033 61.111 0.00 0.00 0.00 3.33
384 385 1.290955 CCTACCCGAGCGACACAAA 59.709 57.895 0.00 0.00 0.00 2.83
385 386 0.320073 CCTACCCGAGCGACACAAAA 60.320 55.000 0.00 0.00 0.00 2.44
386 387 1.068474 CTACCCGAGCGACACAAAAG 58.932 55.000 0.00 0.00 0.00 2.27
387 388 0.390124 TACCCGAGCGACACAAAAGT 59.610 50.000 0.00 0.00 0.00 2.66
388 389 0.463116 ACCCGAGCGACACAAAAGTT 60.463 50.000 0.00 0.00 0.00 2.66
389 390 0.041312 CCCGAGCGACACAAAAGTTG 60.041 55.000 0.00 0.00 0.00 3.16
390 391 0.041312 CCGAGCGACACAAAAGTTGG 60.041 55.000 0.00 0.00 34.12 3.77
391 392 0.655733 CGAGCGACACAAAAGTTGGT 59.344 50.000 0.00 0.00 36.38 3.67
392 393 1.862201 CGAGCGACACAAAAGTTGGTA 59.138 47.619 0.00 0.00 33.96 3.25
393 394 2.478894 CGAGCGACACAAAAGTTGGTAT 59.521 45.455 0.00 0.00 33.96 2.73
394 395 3.423123 CGAGCGACACAAAAGTTGGTATC 60.423 47.826 0.00 0.00 33.96 2.24
395 396 2.478894 AGCGACACAAAAGTTGGTATCG 59.521 45.455 4.71 4.71 36.84 2.92
396 397 2.834689 CGACACAAAAGTTGGTATCGC 58.165 47.619 0.00 0.00 34.12 4.58
397 398 2.478894 CGACACAAAAGTTGGTATCGCT 59.521 45.455 0.00 0.00 34.12 4.93
398 399 3.059188 CGACACAAAAGTTGGTATCGCTT 60.059 43.478 0.00 0.00 34.12 4.68
399 400 4.219033 GACACAAAAGTTGGTATCGCTTG 58.781 43.478 0.00 0.00 34.12 4.01
400 401 3.880490 ACACAAAAGTTGGTATCGCTTGA 59.120 39.130 0.00 0.00 34.12 3.02
401 402 4.336993 ACACAAAAGTTGGTATCGCTTGAA 59.663 37.500 0.00 0.00 34.12 2.69
402 403 4.911610 CACAAAAGTTGGTATCGCTTGAAG 59.088 41.667 0.00 0.00 34.12 3.02
403 404 3.831715 AAAGTTGGTATCGCTTGAAGC 57.168 42.857 7.20 7.20 38.02 3.86
421 422 1.674057 CGGAGCATATCACCTCCCC 59.326 63.158 7.62 0.00 43.78 4.81
422 423 0.833834 CGGAGCATATCACCTCCCCT 60.834 60.000 7.62 0.00 43.78 4.79
423 424 0.980423 GGAGCATATCACCTCCCCTC 59.020 60.000 0.00 0.00 41.42 4.30
424 425 1.722034 GAGCATATCACCTCCCCTCA 58.278 55.000 0.00 0.00 0.00 3.86
425 426 2.264455 GAGCATATCACCTCCCCTCAT 58.736 52.381 0.00 0.00 0.00 2.90
426 427 1.983691 AGCATATCACCTCCCCTCATG 59.016 52.381 0.00 0.00 0.00 3.07
427 428 1.701847 GCATATCACCTCCCCTCATGT 59.298 52.381 0.00 0.00 0.00 3.21
428 429 2.551721 GCATATCACCTCCCCTCATGTG 60.552 54.545 0.00 0.00 0.00 3.21
429 430 2.866923 TATCACCTCCCCTCATGTGA 57.133 50.000 0.00 0.00 41.52 3.58
430 431 2.203120 ATCACCTCCCCTCATGTGAT 57.797 50.000 0.00 0.00 42.11 3.06
431 432 1.206878 TCACCTCCCCTCATGTGATG 58.793 55.000 0.00 0.00 33.09 3.07
432 433 0.182061 CACCTCCCCTCATGTGATGG 59.818 60.000 0.00 0.00 0.00 3.51
433 434 1.150081 CCTCCCCTCATGTGATGGC 59.850 63.158 0.00 0.00 0.00 4.40
434 435 1.638679 CCTCCCCTCATGTGATGGCA 61.639 60.000 0.00 0.00 0.00 4.92
435 436 0.465097 CTCCCCTCATGTGATGGCAC 60.465 60.000 0.00 0.00 45.35 5.01
448 449 3.621953 TGGCACACGACATCATCAA 57.378 47.368 0.00 0.00 0.00 2.57
449 450 2.112380 TGGCACACGACATCATCAAT 57.888 45.000 0.00 0.00 0.00 2.57
450 451 2.009051 TGGCACACGACATCATCAATC 58.991 47.619 0.00 0.00 0.00 2.67
451 452 1.331756 GGCACACGACATCATCAATCC 59.668 52.381 0.00 0.00 0.00 3.01
452 453 2.283298 GCACACGACATCATCAATCCT 58.717 47.619 0.00 0.00 0.00 3.24
453 454 2.286294 GCACACGACATCATCAATCCTC 59.714 50.000 0.00 0.00 0.00 3.71
454 455 2.868583 CACACGACATCATCAATCCTCC 59.131 50.000 0.00 0.00 0.00 4.30
455 456 2.501316 ACACGACATCATCAATCCTCCA 59.499 45.455 0.00 0.00 0.00 3.86
456 457 3.135348 ACACGACATCATCAATCCTCCAT 59.865 43.478 0.00 0.00 0.00 3.41
457 458 3.497262 CACGACATCATCAATCCTCCATG 59.503 47.826 0.00 0.00 0.00 3.66
458 459 3.072211 CGACATCATCAATCCTCCATGG 58.928 50.000 4.97 4.97 37.10 3.66
459 460 2.818432 GACATCATCAATCCTCCATGGC 59.182 50.000 6.96 0.00 35.26 4.40
460 461 2.176148 ACATCATCAATCCTCCATGGCA 59.824 45.455 6.96 0.00 35.26 4.92
461 462 3.227614 CATCATCAATCCTCCATGGCAA 58.772 45.455 6.96 0.00 35.26 4.52
462 463 2.658285 TCATCAATCCTCCATGGCAAC 58.342 47.619 6.96 0.00 35.26 4.17
463 464 2.242965 TCATCAATCCTCCATGGCAACT 59.757 45.455 6.96 0.00 35.26 3.16
464 465 2.425143 TCAATCCTCCATGGCAACTC 57.575 50.000 6.96 0.00 35.26 3.01
465 466 1.634973 TCAATCCTCCATGGCAACTCA 59.365 47.619 6.96 0.00 35.26 3.41
466 467 2.041485 TCAATCCTCCATGGCAACTCAA 59.959 45.455 6.96 0.00 35.26 3.02
467 468 2.134789 ATCCTCCATGGCAACTCAAC 57.865 50.000 6.96 0.00 35.26 3.18
468 469 0.038166 TCCTCCATGGCAACTCAACC 59.962 55.000 6.96 0.00 35.26 3.77
469 470 0.967380 CCTCCATGGCAACTCAACCC 60.967 60.000 6.96 0.00 37.61 4.11
470 471 0.038744 CTCCATGGCAACTCAACCCT 59.961 55.000 6.96 0.00 37.61 4.34
471 472 0.251297 TCCATGGCAACTCAACCCTG 60.251 55.000 6.96 0.00 37.61 4.45
472 473 1.588082 CATGGCAACTCAACCCTGC 59.412 57.895 0.00 0.00 35.28 4.85
473 474 1.153524 ATGGCAACTCAACCCTGCA 59.846 52.632 0.00 0.00 37.83 4.41
474 475 0.896940 ATGGCAACTCAACCCTGCAG 60.897 55.000 6.78 6.78 37.83 4.41
475 476 1.529244 GGCAACTCAACCCTGCAGT 60.529 57.895 13.81 0.00 37.83 4.40
476 477 1.109323 GGCAACTCAACCCTGCAGTT 61.109 55.000 13.81 0.00 37.83 3.16
477 478 0.312102 GCAACTCAACCCTGCAGTTC 59.688 55.000 13.81 0.00 36.09 3.01
478 479 1.972872 CAACTCAACCCTGCAGTTCT 58.027 50.000 13.81 0.00 0.00 3.01
479 480 2.301346 CAACTCAACCCTGCAGTTCTT 58.699 47.619 13.81 0.00 0.00 2.52
480 481 1.972872 ACTCAACCCTGCAGTTCTTG 58.027 50.000 13.81 10.50 0.00 3.02
489 490 4.284123 CAGTTCTTGCCGCTGCTA 57.716 55.556 0.70 0.00 38.71 3.49
490 491 1.790387 CAGTTCTTGCCGCTGCTAC 59.210 57.895 0.70 0.00 38.71 3.58
491 492 0.950555 CAGTTCTTGCCGCTGCTACA 60.951 55.000 0.70 0.00 38.71 2.74
492 493 0.250295 AGTTCTTGCCGCTGCTACAA 60.250 50.000 0.70 0.99 38.71 2.41
493 494 0.804989 GTTCTTGCCGCTGCTACAAT 59.195 50.000 0.70 0.00 38.71 2.71
494 495 1.200020 GTTCTTGCCGCTGCTACAATT 59.800 47.619 0.70 0.00 38.71 2.32
495 496 0.804364 TCTTGCCGCTGCTACAATTG 59.196 50.000 3.24 3.24 38.71 2.32
496 497 0.804364 CTTGCCGCTGCTACAATTGA 59.196 50.000 13.59 0.00 38.71 2.57
497 498 1.199789 CTTGCCGCTGCTACAATTGAA 59.800 47.619 13.59 0.00 38.71 2.69
498 499 1.242989 TGCCGCTGCTACAATTGAAA 58.757 45.000 13.59 0.00 38.71 2.69
499 500 1.068610 TGCCGCTGCTACAATTGAAAC 60.069 47.619 13.59 0.89 38.71 2.78
500 501 1.882198 CCGCTGCTACAATTGAAACG 58.118 50.000 13.59 6.75 0.00 3.60
501 502 1.250476 CGCTGCTACAATTGAAACGC 58.750 50.000 13.59 8.97 0.00 4.84
502 503 1.135972 CGCTGCTACAATTGAAACGCT 60.136 47.619 13.59 0.00 0.00 5.07
503 504 2.093625 CGCTGCTACAATTGAAACGCTA 59.906 45.455 13.59 0.00 0.00 4.26
504 505 3.674423 GCTGCTACAATTGAAACGCTAG 58.326 45.455 13.59 3.34 0.00 3.42
505 506 3.674423 CTGCTACAATTGAAACGCTAGC 58.326 45.455 13.59 13.67 0.00 3.42
506 507 2.418628 TGCTACAATTGAAACGCTAGCC 59.581 45.455 13.59 0.00 0.00 3.93
507 508 2.536928 GCTACAATTGAAACGCTAGCCG 60.537 50.000 13.59 7.08 44.21 5.52
517 518 2.297625 CGCTAGCCGTATTGTGTGG 58.702 57.895 9.66 0.00 0.00 4.17
518 519 1.151777 CGCTAGCCGTATTGTGTGGG 61.152 60.000 9.66 0.00 0.00 4.61
519 520 0.814010 GCTAGCCGTATTGTGTGGGG 60.814 60.000 2.29 0.00 0.00 4.96
520 521 0.828022 CTAGCCGTATTGTGTGGGGA 59.172 55.000 0.00 0.00 0.00 4.81
521 522 1.208535 CTAGCCGTATTGTGTGGGGAA 59.791 52.381 0.00 0.00 0.00 3.97
522 523 0.035439 AGCCGTATTGTGTGGGGAAG 60.035 55.000 0.00 0.00 0.00 3.46
523 524 0.035820 GCCGTATTGTGTGGGGAAGA 60.036 55.000 0.00 0.00 0.00 2.87
524 525 2.012051 GCCGTATTGTGTGGGGAAGAG 61.012 57.143 0.00 0.00 0.00 2.85
525 526 1.553248 CCGTATTGTGTGGGGAAGAGA 59.447 52.381 0.00 0.00 0.00 3.10
526 527 2.027561 CCGTATTGTGTGGGGAAGAGAA 60.028 50.000 0.00 0.00 0.00 2.87
527 528 3.262420 CGTATTGTGTGGGGAAGAGAAG 58.738 50.000 0.00 0.00 0.00 2.85
528 529 2.887151 ATTGTGTGGGGAAGAGAAGG 57.113 50.000 0.00 0.00 0.00 3.46
529 530 1.814429 TTGTGTGGGGAAGAGAAGGA 58.186 50.000 0.00 0.00 0.00 3.36
530 531 1.814429 TGTGTGGGGAAGAGAAGGAA 58.186 50.000 0.00 0.00 0.00 3.36
531 532 2.348472 TGTGTGGGGAAGAGAAGGAAT 58.652 47.619 0.00 0.00 0.00 3.01
532 533 2.040278 TGTGTGGGGAAGAGAAGGAATG 59.960 50.000 0.00 0.00 0.00 2.67
533 534 2.305927 GTGTGGGGAAGAGAAGGAATGA 59.694 50.000 0.00 0.00 0.00 2.57
534 535 2.305927 TGTGGGGAAGAGAAGGAATGAC 59.694 50.000 0.00 0.00 0.00 3.06
535 536 2.573915 GTGGGGAAGAGAAGGAATGACT 59.426 50.000 0.00 0.00 0.00 3.41
536 537 3.009584 GTGGGGAAGAGAAGGAATGACTT 59.990 47.826 0.00 0.00 0.00 3.01
537 538 3.657727 TGGGGAAGAGAAGGAATGACTTT 59.342 43.478 0.00 0.00 0.00 2.66
538 539 4.106341 TGGGGAAGAGAAGGAATGACTTTT 59.894 41.667 0.00 0.00 0.00 2.27
539 540 5.080337 GGGGAAGAGAAGGAATGACTTTTT 58.920 41.667 0.00 0.00 0.00 1.94
565 566 3.722555 CACGTGACACATGTGGTAATC 57.277 47.619 28.64 17.39 44.71 1.75
566 567 3.063485 CACGTGACACATGTGGTAATCA 58.937 45.455 28.64 19.67 44.71 2.57
567 568 3.496507 CACGTGACACATGTGGTAATCAA 59.503 43.478 28.64 6.53 44.71 2.57
568 569 4.154015 CACGTGACACATGTGGTAATCAAT 59.846 41.667 28.64 12.20 44.71 2.57
569 570 4.759693 ACGTGACACATGTGGTAATCAATT 59.240 37.500 28.64 10.86 31.87 2.32
570 571 5.106712 ACGTGACACATGTGGTAATCAATTC 60.107 40.000 28.64 14.32 31.87 2.17
571 572 5.106752 CGTGACACATGTGGTAATCAATTCA 60.107 40.000 28.64 16.61 34.19 2.57
572 573 6.567511 CGTGACACATGTGGTAATCAATTCAA 60.568 38.462 28.64 3.73 34.19 2.69
573 574 7.144661 GTGACACATGTGGTAATCAATTCAAA 58.855 34.615 28.64 0.00 34.19 2.69
574 575 7.114811 GTGACACATGTGGTAATCAATTCAAAC 59.885 37.037 28.64 6.82 34.19 2.93
575 576 7.014134 TGACACATGTGGTAATCAATTCAAACT 59.986 33.333 28.64 2.06 34.19 2.66
576 577 8.402798 ACACATGTGGTAATCAATTCAAACTA 57.597 30.769 28.64 0.00 34.19 2.24
577 578 9.023962 ACACATGTGGTAATCAATTCAAACTAT 57.976 29.630 28.64 0.00 34.19 2.12
578 579 9.859427 CACATGTGGTAATCAATTCAAACTATT 57.141 29.630 18.51 0.00 0.00 1.73
632 633 1.028330 CATCAACGCCCTGCAGTGAT 61.028 55.000 13.81 11.71 0.00 3.06
648 649 6.324819 TGCAGTGATAAGCTTAAAATTGCTC 58.675 36.000 25.73 13.98 38.75 4.26
654 655 8.028938 GTGATAAGCTTAAAATTGCTCAAGGAA 58.971 33.333 10.85 0.00 38.75 3.36
684 685 4.899239 CTCGATCCCTGGCACGCC 62.899 72.222 0.00 0.00 0.00 5.68
722 723 2.048127 GACGGTCACAGCCCACTC 60.048 66.667 2.62 0.00 0.00 3.51
849 852 2.742372 CGCTCCAAACCCACCTCG 60.742 66.667 0.00 0.00 0.00 4.63
930 956 1.600023 CCGCCGCCTATTAAAATCCA 58.400 50.000 0.00 0.00 0.00 3.41
935 961 2.485835 CCGCCTATTAAAATCCACCCGA 60.486 50.000 0.00 0.00 0.00 5.14
1471 3795 0.679002 TTCGTCGGAGGTGTAGAGGG 60.679 60.000 0.00 0.00 0.00 4.30
1478 3802 2.108970 GGAGGTGTAGAGGGTGTTAGG 58.891 57.143 0.00 0.00 0.00 2.69
1530 3861 2.167900 GGCGTTGTGGTAGTAGGATTCT 59.832 50.000 0.00 0.00 0.00 2.40
1548 3879 1.364626 CTCTCTGTTCGTGCCATGGC 61.365 60.000 30.54 30.54 42.35 4.40
1642 3984 6.728200 TCTGTTCTTAATTGTTTGCTCTGTG 58.272 36.000 0.00 0.00 0.00 3.66
1643 3985 5.280945 TGTTCTTAATTGTTTGCTCTGTGC 58.719 37.500 0.00 0.00 43.25 4.57
1657 3999 3.047796 CTCTGTGCAACTGATTGTTTGC 58.952 45.455 0.00 0.00 44.01 3.68
1659 4001 1.130955 GTGCAACTGATTGTTTGCCG 58.869 50.000 3.99 0.00 38.17 5.69
1673 4015 2.125512 GCCGACGTGATCTTGCCT 60.126 61.111 0.00 0.00 0.00 4.75
1682 4024 3.057315 ACGTGATCTTGCCTCAAATTTGG 60.057 43.478 17.90 8.72 0.00 3.28
1686 4028 6.404623 CGTGATCTTGCCTCAAATTTGGATTA 60.405 38.462 17.90 5.91 0.00 1.75
1687 4029 6.753744 GTGATCTTGCCTCAAATTTGGATTAC 59.246 38.462 17.90 13.14 0.00 1.89
1688 4030 6.664816 TGATCTTGCCTCAAATTTGGATTACT 59.335 34.615 17.90 0.00 0.00 2.24
1689 4031 6.271488 TCTTGCCTCAAATTTGGATTACTG 57.729 37.500 17.90 4.41 0.00 2.74
1690 4032 5.774690 TCTTGCCTCAAATTTGGATTACTGT 59.225 36.000 17.90 0.00 0.00 3.55
1692 4034 7.450014 TCTTGCCTCAAATTTGGATTACTGTTA 59.550 33.333 17.90 0.00 0.00 2.41
1693 4035 6.919721 TGCCTCAAATTTGGATTACTGTTAC 58.080 36.000 17.90 0.00 0.00 2.50
1694 4036 6.719370 TGCCTCAAATTTGGATTACTGTTACT 59.281 34.615 17.90 0.00 0.00 2.24
1718 4069 4.998671 TTTGGATTGTCAACTGAAAGCA 57.001 36.364 0.00 0.00 37.60 3.91
1733 4084 4.619973 TGAAAGCAGTAAACCAATTGCAG 58.380 39.130 0.00 0.00 38.97 4.41
1734 4085 2.730550 AGCAGTAAACCAATTGCAGC 57.269 45.000 0.00 0.00 38.97 5.25
1752 4116 6.579666 TGCAGCTTTCTGAATCTTAACATT 57.420 33.333 0.00 0.00 42.95 2.71
1765 4180 9.567776 TGAATCTTAACATTTTGTTACTCCTGA 57.432 29.630 0.00 0.00 41.97 3.86
1773 4626 6.980397 ACATTTTGTTACTCCTGAAAAGCAAG 59.020 34.615 0.00 0.00 0.00 4.01
1779 4632 0.478072 TCCTGAAAAGCAAGGCCTGA 59.522 50.000 5.69 0.00 0.00 3.86
1803 4656 5.927281 ACTCTGAATATGCTTTTGCCATT 57.073 34.783 0.00 0.00 46.87 3.16
1813 4666 3.575256 TGCTTTTGCCATTCAATCTGAGT 59.425 39.130 0.00 0.00 46.87 3.41
1814 4667 4.766373 TGCTTTTGCCATTCAATCTGAGTA 59.234 37.500 0.00 0.00 46.87 2.59
1815 4668 5.106038 TGCTTTTGCCATTCAATCTGAGTAG 60.106 40.000 0.00 0.00 46.87 2.57
1817 4670 6.500684 TTTTGCCATTCAATCTGAGTAGAC 57.499 37.500 0.00 0.00 35.34 2.59
1839 4726 4.948004 ACCATAACTTCCTTTTTCCCGATC 59.052 41.667 0.00 0.00 0.00 3.69
1862 4750 5.411361 TCGGAAACTGGAGTGTAATTGAATG 59.589 40.000 0.00 0.00 0.00 2.67
1917 4805 2.437897 CTCAAGCCTGGCCAACCT 59.562 61.111 16.57 2.36 36.63 3.50
1936 4825 5.930837 ACCTGTCAAACATTTTTCCTGAA 57.069 34.783 0.00 0.00 0.00 3.02
1950 4839 0.809385 CCTGAATGTCTTGCCAGCAG 59.191 55.000 0.00 0.00 0.00 4.24
1978 4867 6.096141 GGTATGTCATTCTCTGAACTCTGAGA 59.904 42.308 12.44 11.12 45.24 3.27
2042 4931 2.792890 CGTCATTCTGAGCAGGACTACG 60.793 54.545 0.00 0.00 0.00 3.51
2043 4932 1.751351 TCATTCTGAGCAGGACTACGG 59.249 52.381 0.00 0.00 0.00 4.02
2061 4950 2.897969 ACGGGAGTAATGGCTCGATAAT 59.102 45.455 0.00 0.00 44.60 1.28
2062 4951 4.084287 ACGGGAGTAATGGCTCGATAATA 58.916 43.478 0.00 0.00 44.60 0.98
2063 4952 4.082354 ACGGGAGTAATGGCTCGATAATAC 60.082 45.833 0.00 0.00 44.60 1.89
2064 4953 4.082408 CGGGAGTAATGGCTCGATAATACA 60.082 45.833 0.00 0.00 36.41 2.29
2065 4954 5.411781 GGGAGTAATGGCTCGATAATACAG 58.588 45.833 0.00 0.00 36.41 2.74
2071 4960 4.569761 TGGCTCGATAATACAGAGACAC 57.430 45.455 0.00 0.00 44.30 3.67
2093 4982 6.154021 ACACTAAGTCGAATTAGGTACCATGT 59.846 38.462 29.78 21.85 37.13 3.21
2094 4983 6.475727 CACTAAGTCGAATTAGGTACCATGTG 59.524 42.308 29.78 16.75 37.13 3.21
2095 4984 5.416271 AAGTCGAATTAGGTACCATGTGT 57.584 39.130 15.94 0.00 0.00 3.72
2096 4985 6.534475 AAGTCGAATTAGGTACCATGTGTA 57.466 37.500 15.94 0.00 0.00 2.90
2097 4986 6.726490 AGTCGAATTAGGTACCATGTGTAT 57.274 37.500 15.94 0.00 0.00 2.29
2098 4987 6.513180 AGTCGAATTAGGTACCATGTGTATG 58.487 40.000 15.94 0.00 0.00 2.39
2099 4988 6.322969 AGTCGAATTAGGTACCATGTGTATGA 59.677 38.462 15.94 0.00 36.36 2.15
2113 5002 6.128007 CCATGTGTATGAGTGGGAAAACTAAC 60.128 42.308 0.00 0.00 36.36 2.34
2122 5011 3.826729 GTGGGAAAACTAACAGCCATTCT 59.173 43.478 0.00 0.00 0.00 2.40
2294 5183 4.458989 TGTTTTCCAGGCAGTCATGTATTC 59.541 41.667 0.00 0.00 0.00 1.75
2441 5331 9.739276 TCTCTTCTCAAACAAATATTACATGGT 57.261 29.630 0.00 0.00 0.00 3.55
2475 5365 1.153549 CCGCTGTAGGAACCTGAGC 60.154 63.158 13.35 13.35 32.71 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.219603 TGAATACAAAAACAACCACAAATTCAA 57.780 25.926 0.00 0.00 29.42 2.69
11 12 8.777865 TGAATACAAAAACAACCACAAATTCA 57.222 26.923 0.00 0.00 0.00 2.57
12 13 9.649024 CATGAATACAAAAACAACCACAAATTC 57.351 29.630 0.00 0.00 0.00 2.17
13 14 9.388506 TCATGAATACAAAAACAACCACAAATT 57.611 25.926 0.00 0.00 0.00 1.82
14 15 8.954950 TCATGAATACAAAAACAACCACAAAT 57.045 26.923 0.00 0.00 0.00 2.32
15 16 8.777865 TTCATGAATACAAAAACAACCACAAA 57.222 26.923 3.38 0.00 0.00 2.83
16 17 8.954950 ATTCATGAATACAAAAACAACCACAA 57.045 26.923 19.42 0.00 0.00 3.33
45 46 8.961294 TCTTGAAAATGTTTGTGGATTTGAAT 57.039 26.923 0.00 0.00 0.00 2.57
46 47 8.961294 ATCTTGAAAATGTTTGTGGATTTGAA 57.039 26.923 0.00 0.00 0.00 2.69
47 48 7.381948 CGATCTTGAAAATGTTTGTGGATTTGA 59.618 33.333 0.00 0.00 0.00 2.69
48 49 7.169645 ACGATCTTGAAAATGTTTGTGGATTTG 59.830 33.333 0.00 0.00 0.00 2.32
49 50 7.169645 CACGATCTTGAAAATGTTTGTGGATTT 59.830 33.333 0.00 0.00 0.00 2.17
50 51 6.642131 CACGATCTTGAAAATGTTTGTGGATT 59.358 34.615 0.00 0.00 0.00 3.01
51 52 6.151691 CACGATCTTGAAAATGTTTGTGGAT 58.848 36.000 0.00 0.00 0.00 3.41
52 53 5.067153 ACACGATCTTGAAAATGTTTGTGGA 59.933 36.000 6.16 0.00 0.00 4.02
53 54 5.280945 ACACGATCTTGAAAATGTTTGTGG 58.719 37.500 6.16 0.00 0.00 4.17
54 55 6.909895 TGTACACGATCTTGAAAATGTTTGTG 59.090 34.615 6.16 0.00 0.00 3.33
55 56 7.022055 TGTACACGATCTTGAAAATGTTTGT 57.978 32.000 6.16 0.00 0.00 2.83
56 57 8.506140 AATGTACACGATCTTGAAAATGTTTG 57.494 30.769 6.16 0.00 0.00 2.93
59 60 9.988350 GATAAATGTACACGATCTTGAAAATGT 57.012 29.630 6.16 0.00 0.00 2.71
60 61 9.986833 TGATAAATGTACACGATCTTGAAAATG 57.013 29.630 6.16 0.00 0.00 2.32
66 67 9.986833 TGAATTTGATAAATGTACACGATCTTG 57.013 29.630 0.00 0.00 0.00 3.02
71 72 9.767684 GTTCATGAATTTGATAAATGTACACGA 57.232 29.630 12.12 0.00 0.00 4.35
72 73 9.553418 TGTTCATGAATTTGATAAATGTACACG 57.447 29.630 12.12 0.00 0.00 4.49
87 88 8.542132 CGTGACTTTGAAAAATGTTCATGAATT 58.458 29.630 12.12 0.75 0.00 2.17
88 89 7.920151 TCGTGACTTTGAAAAATGTTCATGAAT 59.080 29.630 12.12 0.00 0.00 2.57
89 90 7.254137 TCGTGACTTTGAAAAATGTTCATGAA 58.746 30.769 3.38 3.38 0.00 2.57
90 91 6.790282 TCGTGACTTTGAAAAATGTTCATGA 58.210 32.000 0.00 0.00 0.00 3.07
91 92 7.379262 TGATCGTGACTTTGAAAAATGTTCATG 59.621 33.333 0.00 0.00 0.00 3.07
92 93 7.424803 TGATCGTGACTTTGAAAAATGTTCAT 58.575 30.769 0.00 0.00 0.00 2.57
93 94 6.790282 TGATCGTGACTTTGAAAAATGTTCA 58.210 32.000 0.00 0.00 0.00 3.18
94 95 7.858052 ATGATCGTGACTTTGAAAAATGTTC 57.142 32.000 0.00 0.00 0.00 3.18
95 96 8.647143 AAATGATCGTGACTTTGAAAAATGTT 57.353 26.923 0.00 0.00 0.00 2.71
96 97 8.647143 AAAATGATCGTGACTTTGAAAAATGT 57.353 26.923 0.00 0.00 0.00 2.71
177 178 7.875316 TTGAACACGTTCTTGAATTCAAAAA 57.125 28.000 20.82 12.35 40.14 1.94
178 179 8.472683 AATTGAACACGTTCTTGAATTCAAAA 57.527 26.923 20.82 14.64 38.95 2.44
179 180 8.472683 AAATTGAACACGTTCTTGAATTCAAA 57.527 26.923 20.82 9.98 38.95 2.69
180 181 7.757173 TGAAATTGAACACGTTCTTGAATTCAA 59.243 29.630 19.45 19.45 39.58 2.69
181 182 7.254137 TGAAATTGAACACGTTCTTGAATTCA 58.746 30.769 3.38 3.38 40.14 2.57
182 183 7.678194 TGAAATTGAACACGTTCTTGAATTC 57.322 32.000 11.01 0.00 40.14 2.17
183 184 7.920151 TCATGAAATTGAACACGTTCTTGAATT 59.080 29.630 11.01 6.27 40.14 2.17
184 185 7.424803 TCATGAAATTGAACACGTTCTTGAAT 58.575 30.769 11.01 0.73 40.14 2.57
185 186 6.790282 TCATGAAATTGAACACGTTCTTGAA 58.210 32.000 11.01 0.00 40.14 2.69
186 187 6.370433 TCATGAAATTGAACACGTTCTTGA 57.630 33.333 11.01 0.00 40.14 3.02
239 240 9.566530 CAATCACAAAATCAACGGATATTAACA 57.433 29.630 0.00 0.00 32.09 2.41
240 241 9.019764 CCAATCACAAAATCAACGGATATTAAC 57.980 33.333 0.00 0.00 32.09 2.01
241 242 8.744652 ACCAATCACAAAATCAACGGATATTAA 58.255 29.630 0.00 0.00 32.09 1.40
242 243 8.287439 ACCAATCACAAAATCAACGGATATTA 57.713 30.769 0.00 0.00 32.09 0.98
243 244 7.169158 ACCAATCACAAAATCAACGGATATT 57.831 32.000 0.00 0.00 32.09 1.28
244 245 6.773976 ACCAATCACAAAATCAACGGATAT 57.226 33.333 0.00 0.00 32.09 1.63
245 246 6.582677 AACCAATCACAAAATCAACGGATA 57.417 33.333 0.00 0.00 32.09 2.59
246 247 5.467035 AACCAATCACAAAATCAACGGAT 57.533 34.783 0.00 0.00 34.43 4.18
247 248 4.927978 AACCAATCACAAAATCAACGGA 57.072 36.364 0.00 0.00 0.00 4.69
248 249 5.288804 AGAAACCAATCACAAAATCAACGG 58.711 37.500 0.00 0.00 0.00 4.44
249 250 5.976534 TGAGAAACCAATCACAAAATCAACG 59.023 36.000 0.00 0.00 0.00 4.10
250 251 7.202526 TCTGAGAAACCAATCACAAAATCAAC 58.797 34.615 0.00 0.00 0.00 3.18
251 252 7.345422 TCTGAGAAACCAATCACAAAATCAA 57.655 32.000 0.00 0.00 0.00 2.57
252 253 6.957920 TCTGAGAAACCAATCACAAAATCA 57.042 33.333 0.00 0.00 0.00 2.57
253 254 9.346725 GTATTCTGAGAAACCAATCACAAAATC 57.653 33.333 0.00 0.00 0.00 2.17
254 255 8.859090 TGTATTCTGAGAAACCAATCACAAAAT 58.141 29.630 0.00 0.00 0.00 1.82
255 256 8.231692 TGTATTCTGAGAAACCAATCACAAAA 57.768 30.769 0.00 0.00 0.00 2.44
256 257 7.502226 ACTGTATTCTGAGAAACCAATCACAAA 59.498 33.333 0.00 0.00 0.00 2.83
257 258 6.998074 ACTGTATTCTGAGAAACCAATCACAA 59.002 34.615 0.00 0.00 0.00 3.33
258 259 6.533730 ACTGTATTCTGAGAAACCAATCACA 58.466 36.000 0.00 0.00 0.00 3.58
259 260 7.440523 AACTGTATTCTGAGAAACCAATCAC 57.559 36.000 0.00 0.00 0.00 3.06
260 261 9.567776 TTAAACTGTATTCTGAGAAACCAATCA 57.432 29.630 0.00 0.00 0.00 2.57
291 292 7.547370 CGAGTCTGTTAGGATTGAGAGATTTTT 59.453 37.037 0.00 0.00 0.00 1.94
292 293 7.038659 CGAGTCTGTTAGGATTGAGAGATTTT 58.961 38.462 0.00 0.00 0.00 1.82
293 294 6.378564 TCGAGTCTGTTAGGATTGAGAGATTT 59.621 38.462 0.00 0.00 0.00 2.17
294 295 5.888724 TCGAGTCTGTTAGGATTGAGAGATT 59.111 40.000 0.00 0.00 0.00 2.40
295 296 5.441500 TCGAGTCTGTTAGGATTGAGAGAT 58.558 41.667 0.00 0.00 0.00 2.75
296 297 4.844884 TCGAGTCTGTTAGGATTGAGAGA 58.155 43.478 0.00 0.00 0.00 3.10
297 298 4.497340 GCTCGAGTCTGTTAGGATTGAGAG 60.497 50.000 15.13 0.00 0.00 3.20
298 299 3.378742 GCTCGAGTCTGTTAGGATTGAGA 59.621 47.826 15.13 0.00 0.00 3.27
299 300 3.701241 GCTCGAGTCTGTTAGGATTGAG 58.299 50.000 15.13 0.00 0.00 3.02
300 301 2.097629 CGCTCGAGTCTGTTAGGATTGA 59.902 50.000 15.13 0.00 0.00 2.57
301 302 2.097629 TCGCTCGAGTCTGTTAGGATTG 59.902 50.000 15.13 0.00 0.00 2.67
302 303 2.366533 TCGCTCGAGTCTGTTAGGATT 58.633 47.619 15.13 0.00 0.00 3.01
303 304 2.039818 TCGCTCGAGTCTGTTAGGAT 57.960 50.000 15.13 0.00 0.00 3.24
304 305 1.671328 CATCGCTCGAGTCTGTTAGGA 59.329 52.381 15.13 0.00 0.00 2.94
305 306 1.862008 GCATCGCTCGAGTCTGTTAGG 60.862 57.143 15.13 0.00 0.00 2.69
306 307 1.064803 AGCATCGCTCGAGTCTGTTAG 59.935 52.381 15.13 0.00 30.62 2.34
307 308 1.064208 GAGCATCGCTCGAGTCTGTTA 59.936 52.381 15.13 0.00 45.85 2.41
308 309 0.179150 GAGCATCGCTCGAGTCTGTT 60.179 55.000 15.13 7.15 45.85 3.16
309 310 1.431440 GAGCATCGCTCGAGTCTGT 59.569 57.895 15.13 0.00 45.85 3.41
310 311 4.300457 GAGCATCGCTCGAGTCTG 57.700 61.111 15.13 10.12 45.85 3.51
321 322 2.659897 CGGCCAGTAGCGAGCATC 60.660 66.667 2.24 0.00 45.17 3.91
322 323 4.227134 CCGGCCAGTAGCGAGCAT 62.227 66.667 2.24 0.00 45.17 3.79
324 325 4.874977 GACCGGCCAGTAGCGAGC 62.875 72.222 0.00 0.00 45.17 5.03
325 326 4.554363 CGACCGGCCAGTAGCGAG 62.554 72.222 0.00 0.00 45.17 5.03
336 337 0.822532 ACTCTACATAGGCCGACCGG 60.823 60.000 0.00 0.00 42.76 5.28
337 338 1.030457 AACTCTACATAGGCCGACCG 58.970 55.000 0.00 0.00 42.76 4.79
338 339 1.755380 ACAACTCTACATAGGCCGACC 59.245 52.381 0.00 0.00 0.00 4.79
339 340 2.165845 ACACAACTCTACATAGGCCGAC 59.834 50.000 0.00 0.00 0.00 4.79
340 341 2.165641 CACACAACTCTACATAGGCCGA 59.834 50.000 0.00 0.00 0.00 5.54
341 342 2.094182 ACACACAACTCTACATAGGCCG 60.094 50.000 0.00 0.00 0.00 6.13
342 343 3.611766 ACACACAACTCTACATAGGCC 57.388 47.619 0.00 0.00 0.00 5.19
343 344 3.612860 CGAACACACAACTCTACATAGGC 59.387 47.826 0.00 0.00 0.00 3.93
344 345 3.612860 GCGAACACACAACTCTACATAGG 59.387 47.826 0.00 0.00 0.00 2.57
345 346 3.612860 GGCGAACACACAACTCTACATAG 59.387 47.826 0.00 0.00 0.00 2.23
346 347 3.257375 AGGCGAACACACAACTCTACATA 59.743 43.478 0.00 0.00 0.00 2.29
347 348 2.037251 AGGCGAACACACAACTCTACAT 59.963 45.455 0.00 0.00 0.00 2.29
348 349 1.411246 AGGCGAACACACAACTCTACA 59.589 47.619 0.00 0.00 0.00 2.74
349 350 2.150397 AGGCGAACACACAACTCTAC 57.850 50.000 0.00 0.00 0.00 2.59
350 351 2.029649 GGTAGGCGAACACACAACTCTA 60.030 50.000 0.00 0.00 0.00 2.43
351 352 1.270147 GGTAGGCGAACACACAACTCT 60.270 52.381 0.00 0.00 0.00 3.24
352 353 1.145803 GGTAGGCGAACACACAACTC 58.854 55.000 0.00 0.00 0.00 3.01
353 354 0.250166 GGGTAGGCGAACACACAACT 60.250 55.000 0.00 0.00 0.00 3.16
354 355 1.562575 CGGGTAGGCGAACACACAAC 61.563 60.000 0.00 0.00 0.00 3.32
355 356 1.301087 CGGGTAGGCGAACACACAA 60.301 57.895 0.00 0.00 0.00 3.33
356 357 2.149803 CTCGGGTAGGCGAACACACA 62.150 60.000 0.00 0.00 0.00 3.72
357 358 1.445582 CTCGGGTAGGCGAACACAC 60.446 63.158 0.00 0.00 0.00 3.82
358 359 2.967397 CTCGGGTAGGCGAACACA 59.033 61.111 0.00 0.00 0.00 3.72
359 360 2.508663 GCTCGGGTAGGCGAACAC 60.509 66.667 0.00 0.00 0.00 3.32
365 366 2.775032 TTTGTGTCGCTCGGGTAGGC 62.775 60.000 0.00 0.00 0.00 3.93
366 367 0.320073 TTTTGTGTCGCTCGGGTAGG 60.320 55.000 0.00 0.00 0.00 3.18
367 368 1.068474 CTTTTGTGTCGCTCGGGTAG 58.932 55.000 0.00 0.00 0.00 3.18
368 369 0.390124 ACTTTTGTGTCGCTCGGGTA 59.610 50.000 0.00 0.00 0.00 3.69
369 370 0.463116 AACTTTTGTGTCGCTCGGGT 60.463 50.000 0.00 0.00 0.00 5.28
370 371 0.041312 CAACTTTTGTGTCGCTCGGG 60.041 55.000 0.00 0.00 0.00 5.14
371 372 0.041312 CCAACTTTTGTGTCGCTCGG 60.041 55.000 0.00 0.00 0.00 4.63
372 373 0.655733 ACCAACTTTTGTGTCGCTCG 59.344 50.000 0.00 0.00 0.00 5.03
373 374 3.423123 CGATACCAACTTTTGTGTCGCTC 60.423 47.826 0.56 0.00 0.00 5.03
374 375 2.478894 CGATACCAACTTTTGTGTCGCT 59.521 45.455 0.56 0.00 0.00 4.93
375 376 2.834689 CGATACCAACTTTTGTGTCGC 58.165 47.619 0.56 0.00 0.00 5.19
376 377 2.478894 AGCGATACCAACTTTTGTGTCG 59.521 45.455 7.65 7.65 32.81 4.35
377 378 4.024387 TCAAGCGATACCAACTTTTGTGTC 60.024 41.667 0.00 0.00 0.00 3.67
378 379 3.880490 TCAAGCGATACCAACTTTTGTGT 59.120 39.130 0.00 0.00 0.00 3.72
379 380 4.481930 TCAAGCGATACCAACTTTTGTG 57.518 40.909 0.00 0.00 0.00 3.33
380 381 4.556699 GCTTCAAGCGATACCAACTTTTGT 60.557 41.667 0.00 0.00 0.00 2.83
381 382 3.914364 GCTTCAAGCGATACCAACTTTTG 59.086 43.478 0.00 0.00 0.00 2.44
382 383 4.160736 GCTTCAAGCGATACCAACTTTT 57.839 40.909 0.00 0.00 0.00 2.27
383 384 3.831715 GCTTCAAGCGATACCAACTTT 57.168 42.857 0.00 0.00 0.00 2.66
395 396 1.262683 GTGATATGCTCCGCTTCAAGC 59.737 52.381 0.00 0.00 39.02 4.01
396 397 1.869767 GGTGATATGCTCCGCTTCAAG 59.130 52.381 0.00 0.00 0.00 3.02
397 398 1.486310 AGGTGATATGCTCCGCTTCAA 59.514 47.619 0.00 0.00 35.30 2.69
398 399 1.069204 GAGGTGATATGCTCCGCTTCA 59.931 52.381 0.00 0.00 35.30 3.02
399 400 1.606737 GGAGGTGATATGCTCCGCTTC 60.607 57.143 0.00 0.00 35.30 3.86
400 401 0.394565 GGAGGTGATATGCTCCGCTT 59.605 55.000 0.00 0.00 35.30 4.68
401 402 1.476007 GGGAGGTGATATGCTCCGCT 61.476 60.000 0.00 0.00 36.89 5.52
402 403 1.004440 GGGAGGTGATATGCTCCGC 60.004 63.158 0.00 0.00 36.89 5.54
403 404 0.833834 AGGGGAGGTGATATGCTCCG 60.834 60.000 0.00 0.00 36.89 4.63
404 405 0.980423 GAGGGGAGGTGATATGCTCC 59.020 60.000 0.00 0.00 35.38 4.70
405 406 1.722034 TGAGGGGAGGTGATATGCTC 58.278 55.000 0.00 0.00 0.00 4.26
406 407 1.983691 CATGAGGGGAGGTGATATGCT 59.016 52.381 0.00 0.00 0.00 3.79
407 408 1.701847 ACATGAGGGGAGGTGATATGC 59.298 52.381 0.00 0.00 0.00 3.14
408 409 2.974794 TCACATGAGGGGAGGTGATATG 59.025 50.000 0.00 0.00 35.51 1.78
409 410 3.350992 TCACATGAGGGGAGGTGATAT 57.649 47.619 0.00 0.00 35.51 1.63
410 411 2.866923 TCACATGAGGGGAGGTGATA 57.133 50.000 0.00 0.00 35.51 2.15
411 412 2.203120 ATCACATGAGGGGAGGTGAT 57.797 50.000 0.00 0.00 43.93 3.06
412 413 1.206878 CATCACATGAGGGGAGGTGA 58.793 55.000 0.00 0.00 43.61 4.02
413 414 0.182061 CCATCACATGAGGGGAGGTG 59.818 60.000 4.61 0.00 41.94 4.00
414 415 1.639635 GCCATCACATGAGGGGAGGT 61.640 60.000 14.07 0.00 45.47 3.85
415 416 1.150081 GCCATCACATGAGGGGAGG 59.850 63.158 14.07 0.00 45.47 4.30
416 417 0.465097 GTGCCATCACATGAGGGGAG 60.465 60.000 14.07 0.00 46.55 4.30
417 418 1.609239 GTGCCATCACATGAGGGGA 59.391 57.895 14.07 8.68 45.47 4.81
418 419 4.247781 GTGCCATCACATGAGGGG 57.752 61.111 14.07 6.38 45.47 4.79
426 427 2.839629 TGATGTCGTGTGCCATCAC 58.160 52.632 0.00 0.00 41.77 3.06
428 429 1.655484 TGATGATGTCGTGTGCCATC 58.345 50.000 0.00 0.00 38.34 3.51
429 430 2.112380 TTGATGATGTCGTGTGCCAT 57.888 45.000 0.00 0.00 0.00 4.40
430 431 2.009051 GATTGATGATGTCGTGTGCCA 58.991 47.619 0.00 0.00 0.00 4.92
431 432 1.331756 GGATTGATGATGTCGTGTGCC 59.668 52.381 0.00 0.00 0.00 5.01
432 433 2.283298 AGGATTGATGATGTCGTGTGC 58.717 47.619 0.00 0.00 0.00 4.57
433 434 2.868583 GGAGGATTGATGATGTCGTGTG 59.131 50.000 0.00 0.00 0.00 3.82
434 435 2.501316 TGGAGGATTGATGATGTCGTGT 59.499 45.455 0.00 0.00 0.00 4.49
435 436 3.183793 TGGAGGATTGATGATGTCGTG 57.816 47.619 0.00 0.00 0.00 4.35
436 437 3.495629 CCATGGAGGATTGATGATGTCGT 60.496 47.826 5.56 0.00 41.22 4.34
437 438 3.072211 CCATGGAGGATTGATGATGTCG 58.928 50.000 5.56 0.00 41.22 4.35
438 439 2.818432 GCCATGGAGGATTGATGATGTC 59.182 50.000 18.40 0.00 41.22 3.06
439 440 2.176148 TGCCATGGAGGATTGATGATGT 59.824 45.455 18.40 0.00 41.22 3.06
440 441 2.871453 TGCCATGGAGGATTGATGATG 58.129 47.619 18.40 0.00 41.22 3.07
441 442 3.117246 AGTTGCCATGGAGGATTGATGAT 60.117 43.478 18.40 0.00 41.22 2.45
442 443 2.242965 AGTTGCCATGGAGGATTGATGA 59.757 45.455 18.40 0.00 41.22 2.92
443 444 2.621998 GAGTTGCCATGGAGGATTGATG 59.378 50.000 18.40 0.00 41.22 3.07
444 445 2.242965 TGAGTTGCCATGGAGGATTGAT 59.757 45.455 18.40 0.00 41.22 2.57
445 446 1.634973 TGAGTTGCCATGGAGGATTGA 59.365 47.619 18.40 0.00 41.22 2.57
446 447 2.133281 TGAGTTGCCATGGAGGATTG 57.867 50.000 18.40 0.00 41.22 2.67
447 448 2.450476 GTTGAGTTGCCATGGAGGATT 58.550 47.619 18.40 0.00 41.22 3.01
448 449 1.341383 GGTTGAGTTGCCATGGAGGAT 60.341 52.381 18.40 0.00 41.22 3.24
449 450 0.038166 GGTTGAGTTGCCATGGAGGA 59.962 55.000 18.40 0.00 41.22 3.71
450 451 0.967380 GGGTTGAGTTGCCATGGAGG 60.967 60.000 18.40 0.00 41.84 4.30
451 452 0.038744 AGGGTTGAGTTGCCATGGAG 59.961 55.000 18.40 0.00 0.00 3.86
452 453 0.251297 CAGGGTTGAGTTGCCATGGA 60.251 55.000 18.40 0.00 33.41 3.41
453 454 1.880819 GCAGGGTTGAGTTGCCATGG 61.881 60.000 7.63 7.63 37.08 3.66
454 455 1.180456 TGCAGGGTTGAGTTGCCATG 61.180 55.000 0.00 0.00 39.31 3.66
455 456 0.896940 CTGCAGGGTTGAGTTGCCAT 60.897 55.000 5.57 0.00 37.03 4.40
456 457 1.529010 CTGCAGGGTTGAGTTGCCA 60.529 57.895 5.57 0.00 37.03 4.92
457 458 1.109323 AACTGCAGGGTTGAGTTGCC 61.109 55.000 19.93 0.00 37.03 4.52
458 459 0.312102 GAACTGCAGGGTTGAGTTGC 59.688 55.000 19.93 0.00 38.30 4.17
459 460 1.972872 AGAACTGCAGGGTTGAGTTG 58.027 50.000 19.93 0.00 30.25 3.16
460 461 2.301346 CAAGAACTGCAGGGTTGAGTT 58.699 47.619 19.93 1.21 31.68 3.01
461 462 1.972872 CAAGAACTGCAGGGTTGAGT 58.027 50.000 19.93 0.00 0.00 3.41
472 473 0.950555 TGTAGCAGCGGCAAGAACTG 60.951 55.000 12.44 0.00 44.61 3.16
473 474 0.250295 TTGTAGCAGCGGCAAGAACT 60.250 50.000 12.44 0.00 44.61 3.01
474 475 0.804989 ATTGTAGCAGCGGCAAGAAC 59.195 50.000 12.44 4.25 44.61 3.01
475 476 1.199789 CAATTGTAGCAGCGGCAAGAA 59.800 47.619 12.44 0.01 44.61 2.52
476 477 0.804364 CAATTGTAGCAGCGGCAAGA 59.196 50.000 12.44 0.00 44.61 3.02
477 478 0.804364 TCAATTGTAGCAGCGGCAAG 59.196 50.000 12.44 0.00 44.61 4.01
478 479 1.242989 TTCAATTGTAGCAGCGGCAA 58.757 45.000 12.44 7.05 44.61 4.52
479 480 1.068610 GTTTCAATTGTAGCAGCGGCA 60.069 47.619 12.44 0.00 44.61 5.69
480 481 1.617740 GTTTCAATTGTAGCAGCGGC 58.382 50.000 5.13 0.00 41.61 6.53
481 482 1.882198 CGTTTCAATTGTAGCAGCGG 58.118 50.000 5.13 0.00 0.00 5.52
482 483 1.135972 AGCGTTTCAATTGTAGCAGCG 60.136 47.619 5.13 3.87 0.00 5.18
483 484 2.619013 AGCGTTTCAATTGTAGCAGC 57.381 45.000 5.13 6.50 0.00 5.25
484 485 3.485877 GGCTAGCGTTTCAATTGTAGCAG 60.486 47.826 19.29 13.83 35.60 4.24
485 486 2.418628 GGCTAGCGTTTCAATTGTAGCA 59.581 45.455 19.29 7.16 35.60 3.49
486 487 2.536928 CGGCTAGCGTTTCAATTGTAGC 60.537 50.000 9.00 12.67 33.59 3.58
487 488 2.671396 ACGGCTAGCGTTTCAATTGTAG 59.329 45.455 9.00 0.00 0.00 2.74
488 489 2.690786 ACGGCTAGCGTTTCAATTGTA 58.309 42.857 9.00 0.00 0.00 2.41
489 490 1.519408 ACGGCTAGCGTTTCAATTGT 58.481 45.000 9.00 0.00 0.00 2.71
490 491 3.944422 ATACGGCTAGCGTTTCAATTG 57.056 42.857 15.48 0.00 0.00 2.32
491 492 3.687698 ACAATACGGCTAGCGTTTCAATT 59.312 39.130 15.48 8.05 0.00 2.32
492 493 3.063452 CACAATACGGCTAGCGTTTCAAT 59.937 43.478 15.48 3.13 0.00 2.57
493 494 2.413796 CACAATACGGCTAGCGTTTCAA 59.586 45.455 15.48 1.10 0.00 2.69
494 495 1.996898 CACAATACGGCTAGCGTTTCA 59.003 47.619 15.48 1.41 0.00 2.69
495 496 1.997606 ACACAATACGGCTAGCGTTTC 59.002 47.619 15.48 0.00 0.00 2.78
496 497 1.730064 CACACAATACGGCTAGCGTTT 59.270 47.619 15.48 7.07 0.00 3.60
497 498 1.355971 CACACAATACGGCTAGCGTT 58.644 50.000 15.48 4.91 0.00 4.84
498 499 0.459585 CCACACAATACGGCTAGCGT 60.460 55.000 9.00 12.55 0.00 5.07
499 500 1.151777 CCCACACAATACGGCTAGCG 61.152 60.000 9.00 6.83 0.00 4.26
500 501 0.814010 CCCCACACAATACGGCTAGC 60.814 60.000 6.04 6.04 0.00 3.42
501 502 0.828022 TCCCCACACAATACGGCTAG 59.172 55.000 0.00 0.00 0.00 3.42
502 503 1.208535 CTTCCCCACACAATACGGCTA 59.791 52.381 0.00 0.00 0.00 3.93
503 504 0.035439 CTTCCCCACACAATACGGCT 60.035 55.000 0.00 0.00 0.00 5.52
504 505 0.035820 TCTTCCCCACACAATACGGC 60.036 55.000 0.00 0.00 0.00 5.68
505 506 1.553248 TCTCTTCCCCACACAATACGG 59.447 52.381 0.00 0.00 0.00 4.02
506 507 3.262420 CTTCTCTTCCCCACACAATACG 58.738 50.000 0.00 0.00 0.00 3.06
507 508 3.263425 TCCTTCTCTTCCCCACACAATAC 59.737 47.826 0.00 0.00 0.00 1.89
508 509 3.526899 TCCTTCTCTTCCCCACACAATA 58.473 45.455 0.00 0.00 0.00 1.90
509 510 2.348472 TCCTTCTCTTCCCCACACAAT 58.652 47.619 0.00 0.00 0.00 2.71
510 511 1.814429 TCCTTCTCTTCCCCACACAA 58.186 50.000 0.00 0.00 0.00 3.33
511 512 1.814429 TTCCTTCTCTTCCCCACACA 58.186 50.000 0.00 0.00 0.00 3.72
512 513 2.305927 TCATTCCTTCTCTTCCCCACAC 59.694 50.000 0.00 0.00 0.00 3.82
513 514 2.305927 GTCATTCCTTCTCTTCCCCACA 59.694 50.000 0.00 0.00 0.00 4.17
514 515 2.573915 AGTCATTCCTTCTCTTCCCCAC 59.426 50.000 0.00 0.00 0.00 4.61
515 516 2.921221 AGTCATTCCTTCTCTTCCCCA 58.079 47.619 0.00 0.00 0.00 4.96
516 517 4.308526 AAAGTCATTCCTTCTCTTCCCC 57.691 45.455 0.00 0.00 0.00 4.81
538 539 3.065510 CCACATGTGTCACGTGGTAAAAA 59.934 43.478 25.31 0.00 44.27 1.94
539 540 2.614520 CCACATGTGTCACGTGGTAAAA 59.385 45.455 25.31 0.00 44.27 1.52
540 541 2.214347 CCACATGTGTCACGTGGTAAA 58.786 47.619 25.31 0.05 44.27 2.01
541 542 1.872388 CCACATGTGTCACGTGGTAA 58.128 50.000 25.31 0.00 44.27 2.85
542 543 3.597550 CCACATGTGTCACGTGGTA 57.402 52.632 25.31 1.73 44.27 3.25
543 544 4.454948 CCACATGTGTCACGTGGT 57.545 55.556 25.31 11.12 44.27 4.16
545 546 3.063485 TGATTACCACATGTGTCACGTG 58.937 45.455 23.79 21.25 40.80 4.49
546 547 3.394674 TGATTACCACATGTGTCACGT 57.605 42.857 23.79 16.29 0.00 4.49
547 548 4.944962 ATTGATTACCACATGTGTCACG 57.055 40.909 23.79 11.29 0.00 4.35
548 549 6.252967 TGAATTGATTACCACATGTGTCAC 57.747 37.500 23.79 9.88 0.00 3.67
549 550 6.890979 TTGAATTGATTACCACATGTGTCA 57.109 33.333 23.79 17.32 0.00 3.58
550 551 7.370383 AGTTTGAATTGATTACCACATGTGTC 58.630 34.615 23.79 14.99 0.00 3.67
551 552 7.288810 AGTTTGAATTGATTACCACATGTGT 57.711 32.000 23.79 14.29 0.00 3.72
552 553 9.859427 AATAGTTTGAATTGATTACCACATGTG 57.141 29.630 19.31 19.31 0.00 3.21
603 604 1.339929 GGGCGTTGATGTGTTTCCTTT 59.660 47.619 0.00 0.00 0.00 3.11
632 633 8.637986 TCTTTTCCTTGAGCAATTTTAAGCTTA 58.362 29.630 0.86 0.86 42.04 3.09
648 649 3.665323 CGAGACATGCGTTCTTTTCCTTG 60.665 47.826 0.00 0.00 0.00 3.61
654 655 2.271800 GGATCGAGACATGCGTTCTTT 58.728 47.619 0.00 0.00 0.00 2.52
684 685 2.362120 CCCTCTGCTTGGGCCTTG 60.362 66.667 4.53 0.00 37.99 3.61
705 706 2.048127 GAGTGGGCTGTGACCGTC 60.048 66.667 0.00 0.00 29.56 4.79
724 725 1.586028 CCCTGATTGGTTGCGGTTG 59.414 57.895 0.00 0.00 0.00 3.77
802 804 0.928505 TAGAGTGGACGGTGGGGATA 59.071 55.000 0.00 0.00 0.00 2.59
849 852 1.367471 GGTGCTGGTTTTGGGAAGC 59.633 57.895 0.00 0.00 36.18 3.86
935 961 3.641925 GAGGAGGACGACGGGGAGT 62.642 68.421 0.00 0.00 0.00 3.85
1478 3802 1.014352 ACGCAACACAGGTTCAGAAC 58.986 50.000 4.52 4.52 34.21 3.01
1530 3861 1.375908 GCCATGGCACGAACAGAGA 60.376 57.895 32.08 0.00 41.49 3.10
1548 3879 1.136085 CACAAGAACATAACACGGCCG 60.136 52.381 26.86 26.86 0.00 6.13
1552 3883 3.544651 CACAGCACAAGAACATAACACG 58.455 45.455 0.00 0.00 0.00 4.49
1642 3984 1.408422 GTCGGCAAACAATCAGTTGC 58.592 50.000 0.00 0.00 41.19 4.17
1643 3985 1.002900 ACGTCGGCAAACAATCAGTTG 60.003 47.619 0.00 0.00 41.19 3.16
1644 3986 1.002900 CACGTCGGCAAACAATCAGTT 60.003 47.619 0.00 0.00 43.89 3.16
1645 3987 0.586319 CACGTCGGCAAACAATCAGT 59.414 50.000 0.00 0.00 0.00 3.41
1646 3988 0.865111 TCACGTCGGCAAACAATCAG 59.135 50.000 0.00 0.00 0.00 2.90
1647 3989 1.463056 GATCACGTCGGCAAACAATCA 59.537 47.619 0.00 0.00 0.00 2.57
1648 3990 1.732259 AGATCACGTCGGCAAACAATC 59.268 47.619 0.00 0.00 0.00 2.67
1657 3999 0.389817 TTGAGGCAAGATCACGTCGG 60.390 55.000 0.00 0.00 0.00 4.79
1659 4001 4.161333 CAAATTTGAGGCAAGATCACGTC 58.839 43.478 13.08 0.00 0.00 4.34
1686 4028 8.567948 CAGTTGACAATCCAAAATAGTAACAGT 58.432 33.333 0.00 0.00 0.00 3.55
1687 4029 8.783093 TCAGTTGACAATCCAAAATAGTAACAG 58.217 33.333 0.00 0.00 0.00 3.16
1688 4030 8.684386 TCAGTTGACAATCCAAAATAGTAACA 57.316 30.769 0.00 0.00 0.00 2.41
1689 4031 9.959749 TTTCAGTTGACAATCCAAAATAGTAAC 57.040 29.630 0.00 0.00 0.00 2.50
1692 4034 7.147976 GCTTTCAGTTGACAATCCAAAATAGT 58.852 34.615 0.00 0.00 0.00 2.12
1693 4035 7.147312 TGCTTTCAGTTGACAATCCAAAATAG 58.853 34.615 0.00 0.00 0.00 1.73
1694 4036 7.048629 TGCTTTCAGTTGACAATCCAAAATA 57.951 32.000 0.00 0.00 0.00 1.40
1718 4069 4.584325 TCAGAAAGCTGCAATTGGTTTACT 59.416 37.500 7.72 0.43 42.01 2.24
1719 4070 4.870363 TCAGAAAGCTGCAATTGGTTTAC 58.130 39.130 7.72 0.00 42.01 2.01
1720 4071 5.528043 TTCAGAAAGCTGCAATTGGTTTA 57.472 34.783 7.72 0.00 42.01 2.01
1752 4116 4.202111 GCCTTGCTTTTCAGGAGTAACAAA 60.202 41.667 0.00 0.00 0.00 2.83
1765 4180 2.363359 CAGAGTTTCAGGCCTTGCTTTT 59.637 45.455 0.00 0.00 0.00 2.27
1766 4181 1.959282 CAGAGTTTCAGGCCTTGCTTT 59.041 47.619 0.00 0.00 0.00 3.51
1773 4626 3.549794 AGCATATTCAGAGTTTCAGGCC 58.450 45.455 0.00 0.00 0.00 5.19
1779 4632 5.726980 TGGCAAAAGCATATTCAGAGTTT 57.273 34.783 0.00 0.00 0.00 2.66
1803 4656 6.897966 AGGAAGTTATGGTCTACTCAGATTGA 59.102 38.462 0.00 0.00 32.09 2.57
1813 4666 5.248934 TCGGGAAAAAGGAAGTTATGGTCTA 59.751 40.000 0.00 0.00 0.00 2.59
1814 4667 4.042435 TCGGGAAAAAGGAAGTTATGGTCT 59.958 41.667 0.00 0.00 0.00 3.85
1815 4668 4.329392 TCGGGAAAAAGGAAGTTATGGTC 58.671 43.478 0.00 0.00 0.00 4.02
1817 4670 4.035208 CGATCGGGAAAAAGGAAGTTATGG 59.965 45.833 7.38 0.00 0.00 2.74
1839 4726 5.181245 ACATTCAATTACACTCCAGTTTCCG 59.819 40.000 0.00 0.00 0.00 4.30
1862 4750 7.010923 CAGACTAGCTTAACCATTGATCAGAAC 59.989 40.741 0.00 0.00 0.00 3.01
1917 4805 7.111247 AGACATTCAGGAAAAATGTTTGACA 57.889 32.000 3.28 0.00 45.02 3.58
1936 4825 1.303888 CCCACTGCTGGCAAGACAT 60.304 57.895 0.00 0.00 36.00 3.06
1950 4839 5.091261 AGTTCAGAGAATGACATACCCAC 57.909 43.478 0.00 0.00 37.77 4.61
1978 4867 2.730934 AGCAGCAATCCATCAGACAT 57.269 45.000 0.00 0.00 0.00 3.06
2042 4931 5.185249 TCTGTATTATCGAGCCATTACTCCC 59.815 44.000 0.00 0.00 32.79 4.30
2043 4932 6.151312 TCTCTGTATTATCGAGCCATTACTCC 59.849 42.308 0.00 0.00 32.79 3.85
2061 4950 6.883217 ACCTAATTCGACTTAGTGTCTCTGTA 59.117 38.462 18.05 0.00 43.25 2.74
2062 4951 5.711036 ACCTAATTCGACTTAGTGTCTCTGT 59.289 40.000 18.05 7.02 43.25 3.41
2063 4952 6.197364 ACCTAATTCGACTTAGTGTCTCTG 57.803 41.667 18.05 6.51 43.25 3.35
2064 4953 6.318396 GGTACCTAATTCGACTTAGTGTCTCT 59.682 42.308 18.05 1.61 43.25 3.10
2065 4954 6.094603 TGGTACCTAATTCGACTTAGTGTCTC 59.905 42.308 18.05 12.38 43.25 3.36
2071 4960 6.570692 ACACATGGTACCTAATTCGACTTAG 58.429 40.000 14.36 13.97 0.00 2.18
2077 4966 6.420903 CACTCATACACATGGTACCTAATTCG 59.579 42.308 14.36 0.00 34.07 3.34
2082 4971 3.964688 CCCACTCATACACATGGTACCTA 59.035 47.826 14.36 0.00 34.07 3.08
2093 4982 5.001232 GCTGTTAGTTTTCCCACTCATACA 58.999 41.667 0.00 0.00 0.00 2.29
2094 4983 4.395231 GGCTGTTAGTTTTCCCACTCATAC 59.605 45.833 0.00 0.00 0.00 2.39
2095 4984 4.042311 TGGCTGTTAGTTTTCCCACTCATA 59.958 41.667 0.00 0.00 0.00 2.15
2096 4985 3.181434 TGGCTGTTAGTTTTCCCACTCAT 60.181 43.478 0.00 0.00 0.00 2.90
2097 4986 2.173782 TGGCTGTTAGTTTTCCCACTCA 59.826 45.455 0.00 0.00 0.00 3.41
2098 4987 2.858745 TGGCTGTTAGTTTTCCCACTC 58.141 47.619 0.00 0.00 0.00 3.51
2099 4988 3.525800 ATGGCTGTTAGTTTTCCCACT 57.474 42.857 0.00 0.00 0.00 4.00
2113 5002 2.012673 GTGGAGTGCTTAGAATGGCTG 58.987 52.381 0.00 0.00 0.00 4.85
2122 5011 4.565652 GGATTCTTTCCAGTGGAGTGCTTA 60.566 45.833 12.67 0.00 44.74 3.09
2188 5077 1.466950 GCTTGTACTGCATGCCGTTTA 59.533 47.619 20.20 7.02 40.95 2.01
2278 5167 1.935873 CACCGAATACATGACTGCCTG 59.064 52.381 0.00 0.00 0.00 4.85
2294 5183 2.017049 GATTGAGGGGATTTCACACCG 58.983 52.381 0.00 0.00 38.55 4.94
2405 5295 6.340962 TGTTTGAGAAGAGACTCGGAATAA 57.659 37.500 0.00 0.00 39.49 1.40
2411 5301 9.140286 TGTAATATTTGTTTGAGAAGAGACTCG 57.860 33.333 0.00 0.00 39.49 4.18
2441 5331 0.941542 GCGGCGGCATCAAACTATTA 59.058 50.000 9.78 0.00 39.62 0.98
2475 5365 1.514657 CCGCAAACATCACCGCATG 60.515 57.895 0.00 0.00 0.00 4.06
2572 5707 4.039703 GCGGTTTACACCTTCAAGAAAAC 58.960 43.478 0.00 0.00 41.64 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.