Multiple sequence alignment - TraesCS1A01G273100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G273100 chr1A 100.000 3883 0 0 1 3883 466930244 466926362 0.000000e+00 7171
1 TraesCS1A01G273100 chr1D 92.170 1954 81 32 1824 3745 367430233 367428320 0.000000e+00 2695
2 TraesCS1A01G273100 chr1D 85.264 1873 147 74 1 1809 367432021 367430214 0.000000e+00 1810
3 TraesCS1A01G273100 chr1B 91.436 1950 87 34 1836 3745 491983709 491981800 0.000000e+00 2603
4 TraesCS1A01G273100 chr1B 83.767 1460 108 68 294 1678 491985208 491983803 0.000000e+00 1264
5 TraesCS1A01G273100 chr1B 89.908 218 9 9 6 223 491985726 491985522 6.390000e-68 268
6 TraesCS1A01G273100 chr1B 85.106 141 21 0 3743 3883 101470793 101470653 1.120000e-30 145
7 TraesCS1A01G273100 chr3D 77.833 1015 151 46 1896 2883 484822376 484823343 9.420000e-156 560
8 TraesCS1A01G273100 chr3D 85.455 110 15 1 1520 1629 484821957 484822065 3.170000e-21 113
9 TraesCS1A01G273100 chr3B 77.690 1013 155 43 1896 2883 647680070 647681036 1.580000e-153 553
10 TraesCS1A01G273100 chr3B 87.629 97 12 0 1533 1629 647679683 647679779 3.170000e-21 113
11 TraesCS1A01G273100 chr3A 78.836 567 97 17 1864 2420 627864194 627864747 1.030000e-95 361
12 TraesCS1A01G273100 chr3A 82.029 345 32 12 2539 2883 627864875 627865189 2.300000e-67 267
13 TraesCS1A01G273100 chr3A 86.364 110 14 1 1520 1629 627863816 627863924 6.820000e-23 119
14 TraesCS1A01G273100 chr7A 78.022 364 59 14 2539 2884 474296328 474295968 3.930000e-50 209
15 TraesCS1A01G273100 chr7B 77.657 367 61 14 2539 2884 427302946 427302580 1.830000e-48 204
16 TraesCS1A01G273100 chr7B 80.851 141 26 1 3743 3883 151405845 151405706 4.100000e-20 110
17 TraesCS1A01G273100 chr2B 92.562 121 9 0 2764 2884 792990050 792989930 1.430000e-39 174
18 TraesCS1A01G273100 chr2B 83.099 142 23 1 3742 3883 785199024 785198884 1.130000e-25 128
19 TraesCS1A01G273100 chr2A 91.736 121 10 0 2764 2884 769223290 769223410 6.670000e-38 169
20 TraesCS1A01G273100 chr7D 73.561 469 94 19 2209 2672 412886077 412885634 6.720000e-33 152
21 TraesCS1A01G273100 chr7D 85.915 142 20 0 3742 3883 613823935 613824076 6.720000e-33 152
22 TraesCS1A01G273100 chr2D 87.500 128 16 0 2533 2660 644095591 644095718 8.690000e-32 148
23 TraesCS1A01G273100 chr2D 89.109 101 11 0 3744 3844 131283187 131283287 4.070000e-25 126
24 TraesCS1A01G273100 chr4B 87.500 112 14 0 3743 3854 14108524 14108635 3.150000e-26 130
25 TraesCS1A01G273100 chr5D 86.538 104 12 2 3753 3856 347390916 347390815 3.170000e-21 113
26 TraesCS1A01G273100 chr5A 81.295 139 23 3 3746 3883 700866291 700866427 4.100000e-20 110
27 TraesCS1A01G273100 chr4D 83.333 114 17 2 3731 3844 35358486 35358597 1.910000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G273100 chr1A 466926362 466930244 3882 True 7171.000000 7171 100.000000 1 3883 1 chr1A.!!$R1 3882
1 TraesCS1A01G273100 chr1D 367428320 367432021 3701 True 2252.500000 2695 88.717000 1 3745 2 chr1D.!!$R1 3744
2 TraesCS1A01G273100 chr1B 491981800 491985726 3926 True 1378.333333 2603 88.370333 6 3745 3 chr1B.!!$R2 3739
3 TraesCS1A01G273100 chr3D 484821957 484823343 1386 False 336.500000 560 81.644000 1520 2883 2 chr3D.!!$F1 1363
4 TraesCS1A01G273100 chr3B 647679683 647681036 1353 False 333.000000 553 82.659500 1533 2883 2 chr3B.!!$F1 1350
5 TraesCS1A01G273100 chr3A 627863816 627865189 1373 False 249.000000 361 82.409667 1520 2883 3 chr3A.!!$F1 1363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 730 0.031721 ACAGTCGTCGTTCTTGTCCC 59.968 55.0 0.00 0.0 0.00 4.46 F
772 1083 0.033109 ATTTGTTCCTAGCAGGGGGC 60.033 55.0 2.86 0.0 45.30 5.80 F
2477 3104 0.037232 GCTCCCGTTACTTCAGCAGT 60.037 55.0 0.00 0.0 39.87 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2611 0.322366 TCCGCAAATGCATGAGACCA 60.322 50.0 0.0 0.0 42.21 4.02 R
2511 3141 0.459585 TCTTCGTCACGGCTTATGGC 60.460 55.0 0.0 0.0 40.90 4.40 R
3809 4484 0.040336 GTCGCAGTCAGTCTCGTTGA 60.040 55.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 0.334676 CACCTCACCTCCTCTCCTCT 59.665 60.000 0.00 0.00 0.00 3.69
44 46 0.629058 ACCTCACCTCCTCTCCTCTC 59.371 60.000 0.00 0.00 0.00 3.20
45 47 0.926293 CCTCACCTCCTCTCCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
46 48 1.133792 CCTCACCTCCTCTCCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
47 49 1.846439 CTCACCTCCTCTCCTCTCTCT 59.154 57.143 0.00 0.00 0.00 3.10
48 50 1.843851 TCACCTCCTCTCCTCTCTCTC 59.156 57.143 0.00 0.00 0.00 3.20
49 51 1.133792 CACCTCCTCTCCTCTCTCTCC 60.134 61.905 0.00 0.00 0.00 3.71
50 52 0.478507 CCTCCTCTCCTCTCTCTCCC 59.521 65.000 0.00 0.00 0.00 4.30
51 53 1.221635 CTCCTCTCCTCTCTCTCCCA 58.778 60.000 0.00 0.00 0.00 4.37
52 54 0.923358 TCCTCTCCTCTCTCTCCCAC 59.077 60.000 0.00 0.00 0.00 4.61
53 55 0.628522 CCTCTCCTCTCTCTCCCACA 59.371 60.000 0.00 0.00 0.00 4.17
80 82 0.537371 CGTGCCCAAGAAAGGAACCT 60.537 55.000 0.00 0.00 0.00 3.50
132 134 2.835431 CTGGAGCCGGATCGACCT 60.835 66.667 14.60 0.00 36.31 3.85
189 191 2.956964 CGGATCGGCGCTCAAGAC 60.957 66.667 13.15 0.00 0.00 3.01
190 192 2.586357 GGATCGGCGCTCAAGACC 60.586 66.667 13.15 0.00 0.00 3.85
223 225 2.285220 CGCTGATGTGAGTTATTTCGGG 59.715 50.000 0.00 0.00 0.00 5.14
224 226 2.614057 GCTGATGTGAGTTATTTCGGGG 59.386 50.000 0.00 0.00 0.00 5.73
225 227 3.681594 GCTGATGTGAGTTATTTCGGGGA 60.682 47.826 0.00 0.00 0.00 4.81
227 229 3.517901 TGATGTGAGTTATTTCGGGGAGT 59.482 43.478 0.00 0.00 0.00 3.85
228 230 3.604875 TGTGAGTTATTTCGGGGAGTC 57.395 47.619 0.00 0.00 0.00 3.36
232 234 3.055385 TGAGTTATTTCGGGGAGTCTTGG 60.055 47.826 0.00 0.00 0.00 3.61
234 236 0.544697 TATTTCGGGGAGTCTTGGCC 59.455 55.000 0.00 0.00 0.00 5.36
235 237 1.208165 ATTTCGGGGAGTCTTGGCCT 61.208 55.000 3.32 0.00 0.00 5.19
237 239 1.838073 TTCGGGGAGTCTTGGCCTTC 61.838 60.000 3.32 0.00 0.00 3.46
238 240 2.677848 GGGGAGTCTTGGCCTTCC 59.322 66.667 3.32 3.28 0.00 3.46
259 261 4.080356 TCCTCCGTCCTTGATTTGATTGAT 60.080 41.667 0.00 0.00 0.00 2.57
260 262 4.641989 CCTCCGTCCTTGATTTGATTGATT 59.358 41.667 0.00 0.00 0.00 2.57
261 263 5.449588 CCTCCGTCCTTGATTTGATTGATTG 60.450 44.000 0.00 0.00 0.00 2.67
262 264 5.252547 TCCGTCCTTGATTTGATTGATTGA 58.747 37.500 0.00 0.00 0.00 2.57
265 267 4.795278 GTCCTTGATTTGATTGATTGACGC 59.205 41.667 0.00 0.00 0.00 5.19
268 270 2.111756 GATTTGATTGATTGACGCGCC 58.888 47.619 5.73 0.00 0.00 6.53
318 563 1.179152 TTACTGTCCGGATCAAGCGA 58.821 50.000 7.81 0.00 0.00 4.93
372 639 5.836347 AGTTCTTGGCATCTTTTTGTTCTC 58.164 37.500 0.00 0.00 0.00 2.87
429 701 2.678934 TGTCCTAACGCCTCGGCT 60.679 61.111 6.35 0.00 39.32 5.52
458 730 0.031721 ACAGTCGTCGTTCTTGTCCC 59.968 55.000 0.00 0.00 0.00 4.46
471 743 0.534203 TTGTCCCCGCACAAGACTTC 60.534 55.000 0.00 0.00 32.36 3.01
472 744 1.070786 GTCCCCGCACAAGACTTCA 59.929 57.895 0.00 0.00 0.00 3.02
473 745 0.951040 GTCCCCGCACAAGACTTCAG 60.951 60.000 0.00 0.00 0.00 3.02
474 746 1.118965 TCCCCGCACAAGACTTCAGA 61.119 55.000 0.00 0.00 0.00 3.27
475 747 0.036010 CCCCGCACAAGACTTCAGAT 60.036 55.000 0.00 0.00 0.00 2.90
476 748 1.363744 CCCGCACAAGACTTCAGATC 58.636 55.000 0.00 0.00 0.00 2.75
477 749 1.066573 CCCGCACAAGACTTCAGATCT 60.067 52.381 0.00 0.00 0.00 2.75
478 750 2.266554 CCGCACAAGACTTCAGATCTC 58.733 52.381 0.00 0.00 0.00 2.75
479 751 1.916651 CGCACAAGACTTCAGATCTCG 59.083 52.381 0.00 0.00 0.00 4.04
480 752 1.658095 GCACAAGACTTCAGATCTCGC 59.342 52.381 0.00 0.00 0.00 5.03
482 754 1.542030 ACAAGACTTCAGATCTCGCGT 59.458 47.619 5.77 0.00 0.00 6.01
483 755 2.747989 ACAAGACTTCAGATCTCGCGTA 59.252 45.455 5.77 0.00 0.00 4.42
484 756 3.181505 ACAAGACTTCAGATCTCGCGTAG 60.182 47.826 5.77 2.22 0.00 3.51
485 757 1.944024 AGACTTCAGATCTCGCGTAGG 59.056 52.381 5.77 0.00 0.00 3.18
486 758 1.941294 GACTTCAGATCTCGCGTAGGA 59.059 52.381 5.77 3.68 0.00 2.94
487 759 2.355132 GACTTCAGATCTCGCGTAGGAA 59.645 50.000 5.77 2.34 0.00 3.36
488 760 2.097791 ACTTCAGATCTCGCGTAGGAAC 59.902 50.000 5.77 2.44 0.00 3.62
489 761 1.022735 TCAGATCTCGCGTAGGAACC 58.977 55.000 5.77 0.83 0.00 3.62
490 762 1.025812 CAGATCTCGCGTAGGAACCT 58.974 55.000 5.77 0.00 0.00 3.50
491 763 1.025812 AGATCTCGCGTAGGAACCTG 58.974 55.000 5.77 0.00 0.00 4.00
492 764 0.739561 GATCTCGCGTAGGAACCTGT 59.260 55.000 5.77 0.00 0.00 4.00
493 765 0.739561 ATCTCGCGTAGGAACCTGTC 59.260 55.000 5.77 0.00 0.00 3.51
494 766 1.226323 CTCGCGTAGGAACCTGTCG 60.226 63.158 5.77 9.22 0.00 4.35
495 767 1.642037 CTCGCGTAGGAACCTGTCGA 61.642 60.000 5.77 14.62 0.00 4.20
499 772 1.925185 GCGTAGGAACCTGTCGATTTC 59.075 52.381 18.23 0.00 0.00 2.17
506 779 3.371285 GGAACCTGTCGATTTCTTAGCAC 59.629 47.826 0.00 0.00 0.00 4.40
522 795 8.932945 TTCTTAGCACTACATATGTTCTTCAG 57.067 34.615 14.77 7.35 0.00 3.02
559 838 2.759355 TGTCTCTATCCGGGGTGAAAT 58.241 47.619 0.00 0.00 0.00 2.17
561 840 2.047061 TCTCTATCCGGGGTGAAATGG 58.953 52.381 0.00 0.00 0.00 3.16
562 841 2.047061 CTCTATCCGGGGTGAAATGGA 58.953 52.381 0.00 0.00 34.45 3.41
563 842 2.037772 CTCTATCCGGGGTGAAATGGAG 59.962 54.545 0.00 0.00 33.21 3.86
564 843 0.472471 TATCCGGGGTGAAATGGAGC 59.528 55.000 0.00 0.00 33.21 4.70
565 844 2.284515 ATCCGGGGTGAAATGGAGCC 62.285 60.000 0.00 0.00 33.21 4.70
566 845 2.677228 CGGGGTGAAATGGAGCCT 59.323 61.111 0.00 0.00 0.00 4.58
567 846 1.000896 CGGGGTGAAATGGAGCCTT 60.001 57.895 0.00 0.00 0.00 4.35
568 847 1.032114 CGGGGTGAAATGGAGCCTTC 61.032 60.000 0.00 0.00 0.00 3.46
569 848 0.332972 GGGGTGAAATGGAGCCTTCT 59.667 55.000 0.00 0.00 0.00 2.85
570 849 1.272704 GGGGTGAAATGGAGCCTTCTT 60.273 52.381 0.00 0.00 0.00 2.52
580 867 9.253832 TGAAATGGAGCCTTCTTGATTTATTTA 57.746 29.630 0.00 0.00 0.00 1.40
598 886 5.923733 ATTTATTTTACCATGGAACGGCA 57.076 34.783 21.47 0.00 0.00 5.69
630 918 4.471386 AGTTTGTCATGGGATAGCTGTACT 59.529 41.667 0.00 0.00 0.00 2.73
637 925 2.516702 TGGGATAGCTGTACTAGGGTGA 59.483 50.000 0.00 0.00 33.29 4.02
651 939 6.056090 ACTAGGGTGAAGATTTCTTTCTCC 57.944 41.667 0.00 0.00 36.11 3.71
662 950 4.488126 TTTCTTTCTCCAAATGTCGCAG 57.512 40.909 0.00 0.00 0.00 5.18
677 965 4.108299 CAGCATGCCACCGGGGTA 62.108 66.667 15.66 4.01 39.65 3.69
687 977 1.211949 CCACCGGGGTATCATGTTCTT 59.788 52.381 6.32 0.00 0.00 2.52
725 1024 2.532235 CATGGCCATTTTCGATGTGTG 58.468 47.619 17.92 0.00 0.00 3.82
731 1030 3.181510 GCCATTTTCGATGTGTGGACTAC 60.182 47.826 9.89 0.00 31.59 2.73
742 1053 5.871396 TGTGTGGACTACTCTTTTTCTCT 57.129 39.130 0.00 0.00 0.00 3.10
743 1054 6.235231 TGTGTGGACTACTCTTTTTCTCTT 57.765 37.500 0.00 0.00 0.00 2.85
744 1055 6.049149 TGTGTGGACTACTCTTTTTCTCTTG 58.951 40.000 0.00 0.00 0.00 3.02
762 1073 2.787473 TGATGAGGCGATTTGTTCCT 57.213 45.000 0.00 0.00 0.00 3.36
766 1077 1.277842 TGAGGCGATTTGTTCCTAGCA 59.722 47.619 0.00 0.00 0.00 3.49
769 1080 1.017387 GCGATTTGTTCCTAGCAGGG 58.983 55.000 2.86 0.00 35.59 4.45
770 1081 1.668419 CGATTTGTTCCTAGCAGGGG 58.332 55.000 2.86 0.00 35.59 4.79
772 1083 0.033109 ATTTGTTCCTAGCAGGGGGC 60.033 55.000 2.86 0.00 45.30 5.80
783 1094 3.661648 AGGGGGCTGCAACGGAAT 61.662 61.111 0.50 0.00 0.00 3.01
786 1097 1.384222 GGGGGCTGCAACGGAATTAG 61.384 60.000 0.50 0.00 0.00 1.73
787 1098 0.679960 GGGGCTGCAACGGAATTAGT 60.680 55.000 0.50 0.00 0.00 2.24
788 1099 1.407712 GGGGCTGCAACGGAATTAGTA 60.408 52.381 0.50 0.00 0.00 1.82
790 1101 3.495453 GGGGCTGCAACGGAATTAGTATA 60.495 47.826 0.50 0.00 0.00 1.47
791 1102 4.131596 GGGCTGCAACGGAATTAGTATAA 58.868 43.478 0.50 0.00 0.00 0.98
793 1104 5.240844 GGGCTGCAACGGAATTAGTATAATT 59.759 40.000 0.50 0.00 0.00 1.40
794 1105 6.238925 GGGCTGCAACGGAATTAGTATAATTT 60.239 38.462 0.50 0.00 0.00 1.82
795 1106 7.200455 GGCTGCAACGGAATTAGTATAATTTT 58.800 34.615 0.50 0.00 0.00 1.82
796 1107 7.704899 GGCTGCAACGGAATTAGTATAATTTTT 59.295 33.333 0.50 0.00 0.00 1.94
797 1108 8.743099 GCTGCAACGGAATTAGTATAATTTTTC 58.257 33.333 0.00 0.00 0.00 2.29
798 1109 9.781834 CTGCAACGGAATTAGTATAATTTTTCA 57.218 29.630 0.00 0.00 0.00 2.69
799 1110 9.562583 TGCAACGGAATTAGTATAATTTTTCAC 57.437 29.630 0.00 0.00 0.00 3.18
800 1111 9.016623 GCAACGGAATTAGTATAATTTTTCACC 57.983 33.333 0.00 0.00 0.00 4.02
835 1146 6.478344 GTCTCTTTCATGCTATACTCACCAAG 59.522 42.308 0.00 0.00 0.00 3.61
836 1147 5.674525 TCTTTCATGCTATACTCACCAAGG 58.325 41.667 0.00 0.00 0.00 3.61
841 1152 7.136822 TCATGCTATACTCACCAAGGTTATT 57.863 36.000 0.00 0.00 0.00 1.40
842 1153 7.573710 TCATGCTATACTCACCAAGGTTATTT 58.426 34.615 0.00 0.00 0.00 1.40
844 1155 7.624360 TGCTATACTCACCAAGGTTATTTTG 57.376 36.000 0.00 0.00 0.00 2.44
853 1164 5.474876 CACCAAGGTTATTTTGCTCTCTCTT 59.525 40.000 0.00 0.00 0.00 2.85
854 1165 5.707764 ACCAAGGTTATTTTGCTCTCTCTTC 59.292 40.000 0.00 0.00 0.00 2.87
876 1187 2.222796 CGCAGGTACACGTTGATGATTG 60.223 50.000 0.00 0.00 0.00 2.67
883 1194 5.523916 GGTACACGTTGATGATTGCTTCTAT 59.476 40.000 0.00 0.00 0.00 1.98
897 1208 6.561737 TTGCTTCTATCTAGACATACTCCG 57.438 41.667 0.00 0.00 30.81 4.63
906 1217 0.175760 GACATACTCCGGAGCAGCAA 59.824 55.000 31.56 12.12 0.00 3.91
907 1218 0.833287 ACATACTCCGGAGCAGCAAT 59.167 50.000 31.56 13.33 0.00 3.56
908 1219 1.202580 ACATACTCCGGAGCAGCAATC 60.203 52.381 31.56 0.00 0.00 2.67
910 1221 0.687757 TACTCCGGAGCAGCAATCCT 60.688 55.000 31.56 11.00 34.45 3.24
932 1243 0.738762 CTCTGGTGCCGTGATCTGTG 60.739 60.000 0.00 0.00 0.00 3.66
934 1245 1.005037 TGGTGCCGTGATCTGTGAC 60.005 57.895 0.00 0.00 0.00 3.67
936 1247 1.293498 GTGCCGTGATCTGTGACCT 59.707 57.895 0.00 0.00 0.00 3.85
938 1249 0.900182 TGCCGTGATCTGTGACCTCT 60.900 55.000 0.00 0.00 0.00 3.69
940 1251 0.459237 CCGTGATCTGTGACCTCTGC 60.459 60.000 0.00 0.00 0.00 4.26
943 1254 1.547820 GTGATCTGTGACCTCTGCTCA 59.452 52.381 0.00 0.00 0.00 4.26
945 1256 2.836372 TGATCTGTGACCTCTGCTCAAT 59.164 45.455 0.00 0.00 0.00 2.57
966 1277 8.324163 TCAATAAGAGGAACAGTTTAGAAAGC 57.676 34.615 0.00 0.00 0.00 3.51
969 1280 6.869315 AAGAGGAACAGTTTAGAAAGCTTC 57.131 37.500 0.00 0.00 0.00 3.86
970 1281 4.991687 AGAGGAACAGTTTAGAAAGCTTCG 59.008 41.667 0.00 0.00 34.02 3.79
971 1282 4.957296 AGGAACAGTTTAGAAAGCTTCGA 58.043 39.130 0.00 0.00 34.02 3.71
973 1284 4.377533 GGAACAGTTTAGAAAGCTTCGAGC 60.378 45.833 0.00 0.00 42.84 5.03
990 1317 0.179936 AGCTTCCAGCCTGCATCTAC 59.820 55.000 0.00 0.00 43.77 2.59
1376 1703 4.074970 TCTCTGAAGCAGGTGAAATTTCC 58.925 43.478 15.48 6.89 31.51 3.13
1377 1704 3.157087 TCTGAAGCAGGTGAAATTTCCC 58.843 45.455 15.48 14.92 31.51 3.97
1379 1706 1.202348 GAAGCAGGTGAAATTTCCCCG 59.798 52.381 15.48 10.57 29.33 5.73
1381 1708 0.243636 GCAGGTGAAATTTCCCCGTG 59.756 55.000 15.48 16.37 29.33 4.94
1383 1710 1.269448 CAGGTGAAATTTCCCCGTGTG 59.731 52.381 15.48 4.59 29.33 3.82
1386 1713 2.156098 GTGAAATTTCCCCGTGTGCTA 58.844 47.619 15.48 0.00 0.00 3.49
1389 1716 4.396790 GTGAAATTTCCCCGTGTGCTAATA 59.603 41.667 15.48 0.00 0.00 0.98
1413 1742 5.116084 AGCAATCCTTAACCTGAATGCTA 57.884 39.130 0.50 0.00 43.87 3.49
1432 1761 6.588719 TGCTACCAAGAATGCTATTTTGTT 57.411 33.333 0.00 0.00 0.00 2.83
1461 1793 2.756840 TGGCAACATCTGAGACTGAG 57.243 50.000 0.00 0.00 46.17 3.35
1469 1801 3.900601 ACATCTGAGACTGAGGAGTGTTT 59.099 43.478 0.00 0.00 30.16 2.83
1475 1807 4.192317 GAGACTGAGGAGTGTTTGTTGTT 58.808 43.478 0.00 0.00 30.16 2.83
1508 1841 4.569943 TCATGCCTCTTAAGTCAAGACAC 58.430 43.478 1.63 0.00 38.39 3.67
1512 1845 3.006967 GCCTCTTAAGTCAAGACACCTGA 59.993 47.826 1.63 0.00 38.39 3.86
1514 1847 4.039245 CCTCTTAAGTCAAGACACCTGACA 59.961 45.833 1.63 0.00 38.39 3.58
1515 1848 4.945246 TCTTAAGTCAAGACACCTGACAC 58.055 43.478 1.63 0.00 38.39 3.67
1516 1849 4.649674 TCTTAAGTCAAGACACCTGACACT 59.350 41.667 1.63 0.00 38.39 3.55
1517 1850 3.460857 AAGTCAAGACACCTGACACTC 57.539 47.619 2.72 0.00 35.23 3.51
1518 1851 1.338337 AGTCAAGACACCTGACACTCG 59.662 52.381 2.72 0.00 35.23 4.18
1519 1852 1.067212 GTCAAGACACCTGACACTCGT 59.933 52.381 0.00 0.00 33.20 4.18
1522 1855 3.382227 TCAAGACACCTGACACTCGTTTA 59.618 43.478 0.00 0.00 0.00 2.01
1523 1856 4.038763 TCAAGACACCTGACACTCGTTTAT 59.961 41.667 0.00 0.00 0.00 1.40
1526 1859 5.365619 AGACACCTGACACTCGTTTATTTT 58.634 37.500 0.00 0.00 0.00 1.82
1629 1965 4.225042 ACTTGTGCCTGACTAATGGTATGA 59.775 41.667 0.00 0.00 0.00 2.15
1632 1968 6.101650 TGTGCCTGACTAATGGTATGATAG 57.898 41.667 0.00 0.00 0.00 2.08
1684 2034 4.566004 TCATATATTGTGCTAAGGTCGCC 58.434 43.478 0.00 0.00 0.00 5.54
1685 2035 2.256117 ATATTGTGCTAAGGTCGCCC 57.744 50.000 0.00 0.00 0.00 6.13
1686 2036 0.179468 TATTGTGCTAAGGTCGCCCC 59.821 55.000 0.00 0.00 0.00 5.80
1687 2037 1.847798 ATTGTGCTAAGGTCGCCCCA 61.848 55.000 0.00 0.00 34.66 4.96
1692 2042 1.984288 GCTAAGGTCGCCCCAAGGAT 61.984 60.000 0.00 0.00 34.66 3.24
1694 2044 1.978580 CTAAGGTCGCCCCAAGGATAT 59.021 52.381 0.00 0.00 34.66 1.63
1695 2045 0.474184 AAGGTCGCCCCAAGGATATG 59.526 55.000 0.00 0.00 34.66 1.78
1696 2046 0.399949 AGGTCGCCCCAAGGATATGA 60.400 55.000 0.00 0.00 34.66 2.15
1697 2047 0.250338 GGTCGCCCCAAGGATATGAC 60.250 60.000 0.00 0.00 33.47 3.06
1702 2252 2.358898 CGCCCCAAGGATATGACTTTTG 59.641 50.000 0.00 0.00 33.47 2.44
1703 2253 2.101415 GCCCCAAGGATATGACTTTTGC 59.899 50.000 0.00 0.00 33.47 3.68
1708 2268 5.185635 CCCAAGGATATGACTTTTGCTGAAA 59.814 40.000 0.00 0.00 0.00 2.69
1751 2311 5.792741 TGAAATTCTACATTTTGGCCTTGG 58.207 37.500 3.32 0.00 0.00 3.61
1759 2319 3.199727 ACATTTTGGCCTTGGTTTTGTCT 59.800 39.130 3.32 0.00 0.00 3.41
1762 2322 2.151502 TGGCCTTGGTTTTGTCTCAA 57.848 45.000 3.32 0.00 0.00 3.02
1763 2323 2.461695 TGGCCTTGGTTTTGTCTCAAA 58.538 42.857 3.32 0.00 0.00 2.69
1764 2324 3.037549 TGGCCTTGGTTTTGTCTCAAAT 58.962 40.909 3.32 0.00 0.00 2.32
1765 2325 3.181467 TGGCCTTGGTTTTGTCTCAAATG 60.181 43.478 3.32 0.00 0.00 2.32
1767 2327 4.441792 GCCTTGGTTTTGTCTCAAATGTT 58.558 39.130 0.00 0.00 0.00 2.71
1768 2328 4.875536 GCCTTGGTTTTGTCTCAAATGTTT 59.124 37.500 0.00 0.00 0.00 2.83
1769 2329 5.006649 GCCTTGGTTTTGTCTCAAATGTTTC 59.993 40.000 0.00 0.00 0.00 2.78
1781 2341 9.179909 TGTCTCAAATGTTTCTACCTGTTTTTA 57.820 29.630 0.00 0.00 0.00 1.52
1811 2371 6.049263 GATGAAATCGTGGTGAAGTTATCC 57.951 41.667 0.00 0.00 31.13 2.59
1812 2372 3.930229 TGAAATCGTGGTGAAGTTATCCG 59.070 43.478 0.00 0.00 0.00 4.18
1813 2373 1.935933 ATCGTGGTGAAGTTATCCGC 58.064 50.000 0.81 0.81 0.00 5.54
1814 2374 0.604073 TCGTGGTGAAGTTATCCGCA 59.396 50.000 9.15 0.00 0.00 5.69
1815 2375 1.001068 TCGTGGTGAAGTTATCCGCAA 59.999 47.619 9.15 0.00 0.00 4.85
1816 2376 1.801771 CGTGGTGAAGTTATCCGCAAA 59.198 47.619 9.15 0.00 0.00 3.68
1817 2377 2.224549 CGTGGTGAAGTTATCCGCAAAA 59.775 45.455 9.15 0.00 0.00 2.44
1818 2378 3.304123 CGTGGTGAAGTTATCCGCAAAAA 60.304 43.478 9.15 0.00 0.00 1.94
1819 2379 4.226761 GTGGTGAAGTTATCCGCAAAAAG 58.773 43.478 4.98 0.00 0.00 2.27
1820 2380 4.023536 GTGGTGAAGTTATCCGCAAAAAGA 60.024 41.667 4.98 0.00 0.00 2.52
1821 2381 4.580995 TGGTGAAGTTATCCGCAAAAAGAA 59.419 37.500 0.00 0.00 0.00 2.52
1822 2382 5.067936 TGGTGAAGTTATCCGCAAAAAGAAA 59.932 36.000 0.00 0.00 0.00 2.52
1827 2387 8.087750 TGAAGTTATCCGCAAAAAGAAAATGAT 58.912 29.630 0.00 0.00 0.00 2.45
1842 2402 9.865321 AAAGAAAATGATATCATGGTGAAGTTG 57.135 29.630 18.85 0.00 36.56 3.16
1845 2405 7.578310 AAATGATATCATGGTGAAGTTGAGG 57.422 36.000 18.85 0.00 36.56 3.86
1862 2422 7.150783 AGTTGAGGTGCTGATCTTTTATTTC 57.849 36.000 0.00 0.00 0.00 2.17
1863 2423 6.944862 AGTTGAGGTGCTGATCTTTTATTTCT 59.055 34.615 0.00 0.00 0.00 2.52
2016 2577 4.630069 CCTACATTGGAAAACTGAGGTACG 59.370 45.833 0.00 0.00 0.00 3.67
2049 2611 7.127339 ACATGTATACTGTAACCATTTCCTCCT 59.873 37.037 0.00 0.00 0.00 3.69
2085 2649 5.054390 TGCGGATAATGAAACCAACTTTC 57.946 39.130 0.00 0.00 39.11 2.62
2087 2651 5.242838 TGCGGATAATGAAACCAACTTTCTT 59.757 36.000 0.00 0.00 39.36 2.52
2201 2801 2.691011 GAGTAGCCGGAGATTCAACTCT 59.309 50.000 5.05 0.00 37.13 3.24
2327 2927 2.731571 GCACTCCATACCGGCCTCA 61.732 63.158 0.00 0.00 33.14 3.86
2477 3104 0.037232 GCTCCCGTTACTTCAGCAGT 60.037 55.000 0.00 0.00 39.87 4.40
2487 3114 0.875059 CTTCAGCAGTTCCCGGTTTC 59.125 55.000 0.00 0.00 0.00 2.78
2938 3571 4.814294 CGGCGGTCGAAGGAAGGG 62.814 72.222 0.00 0.00 42.43 3.95
2939 3572 3.387947 GGCGGTCGAAGGAAGGGA 61.388 66.667 0.00 0.00 0.00 4.20
2940 3573 2.660802 GCGGTCGAAGGAAGGGAA 59.339 61.111 0.00 0.00 0.00 3.97
2941 3574 1.448013 GCGGTCGAAGGAAGGGAAG 60.448 63.158 0.00 0.00 0.00 3.46
2942 3575 1.885163 GCGGTCGAAGGAAGGGAAGA 61.885 60.000 0.00 0.00 0.00 2.87
2943 3576 0.606604 CGGTCGAAGGAAGGGAAGAA 59.393 55.000 0.00 0.00 0.00 2.52
2944 3577 1.001633 CGGTCGAAGGAAGGGAAGAAA 59.998 52.381 0.00 0.00 0.00 2.52
2945 3578 2.701107 GGTCGAAGGAAGGGAAGAAAG 58.299 52.381 0.00 0.00 0.00 2.62
2946 3579 2.038689 GGTCGAAGGAAGGGAAGAAAGT 59.961 50.000 0.00 0.00 0.00 2.66
2997 3631 3.632333 TCCATTCTAGATCACGGACACT 58.368 45.455 0.00 0.00 0.00 3.55
2998 3632 3.632604 TCCATTCTAGATCACGGACACTC 59.367 47.826 0.00 0.00 0.00 3.51
3004 3638 1.550976 AGATCACGGACACTCCCTTTC 59.449 52.381 0.00 0.00 31.13 2.62
3037 3671 6.917477 TGTAATTCTGCTTTGTTTGTAGCTTG 59.083 34.615 0.00 0.00 38.22 4.01
3038 3672 3.354089 TCTGCTTTGTTTGTAGCTTGC 57.646 42.857 0.00 0.00 38.22 4.01
3040 3674 3.047796 CTGCTTTGTTTGTAGCTTGCTG 58.952 45.455 5.26 0.00 38.22 4.41
3042 3676 2.034558 GCTTTGTTTGTAGCTTGCTGGA 59.965 45.455 5.26 0.00 34.57 3.86
3044 3678 3.708563 TTGTTTGTAGCTTGCTGGAAC 57.291 42.857 5.26 7.74 0.00 3.62
3045 3679 2.930950 TGTTTGTAGCTTGCTGGAACT 58.069 42.857 5.26 0.00 0.00 3.01
3046 3680 2.618241 TGTTTGTAGCTTGCTGGAACTG 59.382 45.455 5.26 0.00 0.00 3.16
3062 3696 1.227380 CTGGGACTCGGTAGCATGC 60.227 63.158 10.51 10.51 0.00 4.06
3064 3698 2.494918 GGACTCGGTAGCATGCGT 59.505 61.111 13.01 2.22 0.00 5.24
3119 3753 1.231958 TTTCGTGGATGCGGTTGGTC 61.232 55.000 0.00 0.00 0.00 4.02
3120 3754 2.047274 CGTGGATGCGGTTGGTCT 60.047 61.111 0.00 0.00 0.00 3.85
3121 3755 2.100631 CGTGGATGCGGTTGGTCTC 61.101 63.158 0.00 0.00 0.00 3.36
3122 3756 1.296715 GTGGATGCGGTTGGTCTCT 59.703 57.895 0.00 0.00 0.00 3.10
3145 3779 3.200605 TCCGGATTTAACCTAAGGTTCCC 59.799 47.826 0.00 0.00 43.05 3.97
3185 3825 5.126061 GCCTTTGAGCTTTTTCTATGGATGA 59.874 40.000 0.00 0.00 0.00 2.92
3186 3826 6.183360 GCCTTTGAGCTTTTTCTATGGATGAT 60.183 38.462 0.00 0.00 0.00 2.45
3187 3827 7.201145 CCTTTGAGCTTTTTCTATGGATGATG 58.799 38.462 0.00 0.00 0.00 3.07
3188 3828 5.762825 TGAGCTTTTTCTATGGATGATGC 57.237 39.130 0.00 0.00 0.00 3.91
3189 3829 4.581824 TGAGCTTTTTCTATGGATGATGCC 59.418 41.667 0.00 0.00 0.00 4.40
3190 3830 3.893813 AGCTTTTTCTATGGATGATGCCC 59.106 43.478 0.00 0.00 0.00 5.36
3191 3831 3.638160 GCTTTTTCTATGGATGATGCCCA 59.362 43.478 0.00 0.00 38.19 5.36
3239 3880 6.238759 GGTTCAGTGCTTCTGTTCTTTTACAT 60.239 38.462 8.75 0.00 43.97 2.29
3240 3881 6.942532 TCAGTGCTTCTGTTCTTTTACATT 57.057 33.333 8.75 0.00 43.97 2.71
3265 3923 4.913376 CATGTGTGCTTGCCTTATTCTAC 58.087 43.478 0.00 0.00 0.00 2.59
3315 3973 3.607741 CTTGTCTCACATGATGAAGCCT 58.392 45.455 0.00 0.00 36.69 4.58
3375 4033 3.741856 TGCATGTTGTTTTAGCAAGCATG 59.258 39.130 0.00 12.68 38.89 4.06
3395 4053 5.630680 GCATGAACAGTGGTTTTGTCTAATG 59.369 40.000 0.00 0.00 37.36 1.90
3416 4074 3.947196 TGGGAGAATCATTGCACATGTAC 59.053 43.478 0.00 0.00 36.25 2.90
3417 4075 3.002656 GGGAGAATCATTGCACATGTACG 59.997 47.826 0.00 0.00 36.25 3.67
3418 4076 3.623060 GGAGAATCATTGCACATGTACGT 59.377 43.478 0.00 0.00 36.25 3.57
3419 4077 4.808895 GGAGAATCATTGCACATGTACGTA 59.191 41.667 0.00 0.00 36.25 3.57
3437 4096 2.095263 CGTACCTGCCACCTTTTTCATG 60.095 50.000 0.00 0.00 0.00 3.07
3455 4114 3.565482 TCATGAGCTTTTGAGTGTTCCAC 59.435 43.478 0.00 0.00 34.10 4.02
3481 4140 2.094675 CCTTTGGGTTCAGCTACCATG 58.905 52.381 7.95 0.00 40.09 3.66
3499 4158 0.991920 TGATTTCTGGGAGGTGGGTC 59.008 55.000 0.00 0.00 0.00 4.46
3526 4185 0.250234 TTTCAGCATGGAGGAGGACG 59.750 55.000 0.00 0.00 36.16 4.79
3549 4216 6.042777 CGCATTTCCTGTAGTGAGAAAGATA 58.957 40.000 0.00 0.00 33.33 1.98
3657 4324 1.357761 ACCGGATGGGAGGAACAATTT 59.642 47.619 9.46 0.00 40.75 1.82
3660 4327 3.119137 CCGGATGGGAGGAACAATTTTTC 60.119 47.826 0.00 0.00 38.47 2.29
3705 4380 0.528466 ACGTGACTGAGCGCATATGG 60.528 55.000 11.47 0.00 0.00 2.74
3718 4393 1.268234 GCATATGGCTGACAGCGAAAC 60.268 52.381 20.82 7.85 43.62 2.78
3745 4420 5.193728 ACCCACCATACCAGAAAATCATACT 59.806 40.000 0.00 0.00 0.00 2.12
3746 4421 5.765182 CCCACCATACCAGAAAATCATACTC 59.235 44.000 0.00 0.00 0.00 2.59
3747 4422 5.765182 CCACCATACCAGAAAATCATACTCC 59.235 44.000 0.00 0.00 0.00 3.85
3748 4423 6.356556 CACCATACCAGAAAATCATACTCCA 58.643 40.000 0.00 0.00 0.00 3.86
3749 4424 7.000472 CACCATACCAGAAAATCATACTCCAT 59.000 38.462 0.00 0.00 0.00 3.41
3750 4425 7.173907 CACCATACCAGAAAATCATACTCCATC 59.826 40.741 0.00 0.00 0.00 3.51
3751 4426 7.147320 ACCATACCAGAAAATCATACTCCATCA 60.147 37.037 0.00 0.00 0.00 3.07
3752 4427 7.720957 CCATACCAGAAAATCATACTCCATCAA 59.279 37.037 0.00 0.00 0.00 2.57
3753 4428 9.293404 CATACCAGAAAATCATACTCCATCAAT 57.707 33.333 0.00 0.00 0.00 2.57
3754 4429 9.872684 ATACCAGAAAATCATACTCCATCAATT 57.127 29.630 0.00 0.00 0.00 2.32
3755 4430 8.230472 ACCAGAAAATCATACTCCATCAATTC 57.770 34.615 0.00 0.00 0.00 2.17
3756 4431 7.286316 ACCAGAAAATCATACTCCATCAATTCC 59.714 37.037 0.00 0.00 0.00 3.01
3757 4432 7.286087 CCAGAAAATCATACTCCATCAATTCCA 59.714 37.037 0.00 0.00 0.00 3.53
3758 4433 8.133627 CAGAAAATCATACTCCATCAATTCCAC 58.866 37.037 0.00 0.00 0.00 4.02
3759 4434 7.835682 AGAAAATCATACTCCATCAATTCCACA 59.164 33.333 0.00 0.00 0.00 4.17
3760 4435 7.959658 AAATCATACTCCATCAATTCCACAA 57.040 32.000 0.00 0.00 0.00 3.33
3761 4436 8.543293 AAATCATACTCCATCAATTCCACAAT 57.457 30.769 0.00 0.00 0.00 2.71
3762 4437 6.947644 TCATACTCCATCAATTCCACAATG 57.052 37.500 0.00 0.00 0.00 2.82
3763 4438 6.425735 TCATACTCCATCAATTCCACAATGT 58.574 36.000 0.00 0.00 0.00 2.71
3764 4439 7.572814 TCATACTCCATCAATTCCACAATGTA 58.427 34.615 0.00 0.00 0.00 2.29
3765 4440 7.716560 TCATACTCCATCAATTCCACAATGTAG 59.283 37.037 0.00 0.00 0.00 2.74
3766 4441 5.819991 ACTCCATCAATTCCACAATGTAGT 58.180 37.500 0.00 0.00 0.00 2.73
3767 4442 5.649395 ACTCCATCAATTCCACAATGTAGTG 59.351 40.000 0.00 0.00 39.21 2.74
3768 4443 4.398988 TCCATCAATTCCACAATGTAGTGC 59.601 41.667 0.00 0.00 38.18 4.40
3769 4444 4.345288 CATCAATTCCACAATGTAGTGCG 58.655 43.478 0.00 0.00 38.18 5.34
3770 4445 2.161410 TCAATTCCACAATGTAGTGCGC 59.839 45.455 0.00 0.00 38.18 6.09
3771 4446 1.094785 ATTCCACAATGTAGTGCGCC 58.905 50.000 4.18 0.00 38.18 6.53
3772 4447 0.958382 TTCCACAATGTAGTGCGCCC 60.958 55.000 4.18 0.00 38.18 6.13
3773 4448 2.749865 CCACAATGTAGTGCGCCCG 61.750 63.158 4.18 0.00 38.18 6.13
3774 4449 3.124921 ACAATGTAGTGCGCCCGC 61.125 61.111 4.18 5.60 42.35 6.13
3775 4450 4.222589 CAATGTAGTGCGCCCGCG 62.223 66.667 4.18 4.36 45.51 6.46
3786 4461 2.512515 GCCCGCGCTTTCAGAGAT 60.513 61.111 5.56 0.00 0.00 2.75
3787 4462 2.529619 GCCCGCGCTTTCAGAGATC 61.530 63.158 5.56 0.00 0.00 2.75
3788 4463 1.884926 CCCGCGCTTTCAGAGATCC 60.885 63.158 5.56 0.00 0.00 3.36
3789 4464 1.153568 CCGCGCTTTCAGAGATCCA 60.154 57.895 5.56 0.00 0.00 3.41
3790 4465 0.740868 CCGCGCTTTCAGAGATCCAA 60.741 55.000 5.56 0.00 0.00 3.53
3791 4466 0.649475 CGCGCTTTCAGAGATCCAAG 59.351 55.000 5.56 0.00 0.00 3.61
3792 4467 1.731720 GCGCTTTCAGAGATCCAAGT 58.268 50.000 0.00 0.00 0.00 3.16
3793 4468 2.079925 GCGCTTTCAGAGATCCAAGTT 58.920 47.619 0.00 0.00 0.00 2.66
3794 4469 2.485814 GCGCTTTCAGAGATCCAAGTTT 59.514 45.455 0.00 0.00 0.00 2.66
3795 4470 3.669023 GCGCTTTCAGAGATCCAAGTTTG 60.669 47.826 0.00 0.00 0.00 2.93
3796 4471 3.748048 CGCTTTCAGAGATCCAAGTTTGA 59.252 43.478 0.00 0.00 0.00 2.69
3797 4472 4.394300 CGCTTTCAGAGATCCAAGTTTGAT 59.606 41.667 0.00 0.00 0.00 2.57
3798 4473 5.106396 CGCTTTCAGAGATCCAAGTTTGATT 60.106 40.000 0.00 0.00 0.00 2.57
3799 4474 6.091437 GCTTTCAGAGATCCAAGTTTGATTG 58.909 40.000 0.00 0.00 0.00 2.67
3800 4475 6.294397 GCTTTCAGAGATCCAAGTTTGATTGT 60.294 38.462 0.00 0.00 0.00 2.71
3801 4476 7.094634 GCTTTCAGAGATCCAAGTTTGATTGTA 60.095 37.037 0.00 0.00 0.00 2.41
3802 4477 8.690203 TTTCAGAGATCCAAGTTTGATTGTAA 57.310 30.769 0.00 0.00 0.00 2.41
3803 4478 8.690203 TTCAGAGATCCAAGTTTGATTGTAAA 57.310 30.769 0.00 0.00 0.00 2.01
3804 4479 8.868522 TCAGAGATCCAAGTTTGATTGTAAAT 57.131 30.769 0.00 0.00 0.00 1.40
3805 4480 9.300681 TCAGAGATCCAAGTTTGATTGTAAATT 57.699 29.630 0.00 0.00 0.00 1.82
3806 4481 9.918630 CAGAGATCCAAGTTTGATTGTAAATTT 57.081 29.630 0.00 0.00 0.00 1.82
3823 4498 8.827177 TGTAAATTTAATCAACGAGACTGACT 57.173 30.769 0.00 0.00 0.00 3.41
3824 4499 8.708742 TGTAAATTTAATCAACGAGACTGACTG 58.291 33.333 0.00 0.00 0.00 3.51
3825 4500 5.786401 ATTTAATCAACGAGACTGACTGC 57.214 39.130 0.00 0.00 0.00 4.40
3826 4501 1.702886 AATCAACGAGACTGACTGCG 58.297 50.000 0.00 0.00 0.00 5.18
3827 4502 0.881796 ATCAACGAGACTGACTGCGA 59.118 50.000 0.00 0.00 0.00 5.10
3828 4503 0.040336 TCAACGAGACTGACTGCGAC 60.040 55.000 0.00 0.00 0.00 5.19
3829 4504 1.082038 AACGAGACTGACTGCGACG 60.082 57.895 0.00 0.00 0.00 5.12
3830 4505 2.202362 CGAGACTGACTGCGACGG 60.202 66.667 0.00 0.00 0.00 4.79
3831 4506 2.179517 GAGACTGACTGCGACGGG 59.820 66.667 0.00 0.00 0.00 5.28
3832 4507 2.282251 AGACTGACTGCGACGGGA 60.282 61.111 0.00 0.00 0.00 5.14
3833 4508 2.179517 GACTGACTGCGACGGGAG 59.820 66.667 0.00 0.00 37.67 4.30
3834 4509 3.973267 GACTGACTGCGACGGGAGC 62.973 68.421 0.00 0.00 34.49 4.70
3835 4510 4.056125 CTGACTGCGACGGGAGCA 62.056 66.667 0.00 2.04 42.99 4.26
3836 4511 3.573772 CTGACTGCGACGGGAGCAA 62.574 63.158 0.00 0.00 44.67 3.91
3837 4512 2.357034 GACTGCGACGGGAGCAAA 60.357 61.111 0.00 0.00 44.67 3.68
3838 4513 1.959226 GACTGCGACGGGAGCAAAA 60.959 57.895 0.00 0.00 44.67 2.44
3839 4514 1.503818 GACTGCGACGGGAGCAAAAA 61.504 55.000 0.00 0.00 44.67 1.94
3840 4515 0.889186 ACTGCGACGGGAGCAAAAAT 60.889 50.000 0.00 0.00 44.67 1.82
3841 4516 0.240945 CTGCGACGGGAGCAAAAATT 59.759 50.000 0.00 0.00 44.67 1.82
3842 4517 1.466950 CTGCGACGGGAGCAAAAATTA 59.533 47.619 0.00 0.00 44.67 1.40
3843 4518 2.088423 TGCGACGGGAGCAAAAATTAT 58.912 42.857 0.00 0.00 42.18 1.28
3844 4519 2.159448 TGCGACGGGAGCAAAAATTATG 60.159 45.455 0.00 0.00 42.18 1.90
3845 4520 2.159435 GCGACGGGAGCAAAAATTATGT 60.159 45.455 0.00 0.00 34.19 2.29
3846 4521 3.680789 CGACGGGAGCAAAAATTATGTC 58.319 45.455 0.00 0.00 0.00 3.06
3847 4522 3.126171 CGACGGGAGCAAAAATTATGTCA 59.874 43.478 0.00 0.00 0.00 3.58
3848 4523 4.412207 GACGGGAGCAAAAATTATGTCAC 58.588 43.478 0.00 0.00 0.00 3.67
3849 4524 3.192633 ACGGGAGCAAAAATTATGTCACC 59.807 43.478 0.00 0.00 0.00 4.02
3850 4525 3.730662 CGGGAGCAAAAATTATGTCACCG 60.731 47.826 0.00 0.00 0.00 4.94
3851 4526 3.442273 GGGAGCAAAAATTATGTCACCGA 59.558 43.478 0.00 0.00 0.00 4.69
3852 4527 4.082463 GGGAGCAAAAATTATGTCACCGAA 60.082 41.667 0.00 0.00 0.00 4.30
3853 4528 5.394115 GGGAGCAAAAATTATGTCACCGAAT 60.394 40.000 0.00 0.00 0.00 3.34
3854 4529 6.099341 GGAGCAAAAATTATGTCACCGAATT 58.901 36.000 0.00 0.00 0.00 2.17
3855 4530 6.253512 GGAGCAAAAATTATGTCACCGAATTC 59.746 38.462 0.00 0.00 0.00 2.17
3856 4531 6.686630 AGCAAAAATTATGTCACCGAATTCA 58.313 32.000 6.22 0.00 0.00 2.57
3857 4532 7.151308 AGCAAAAATTATGTCACCGAATTCAA 58.849 30.769 6.22 0.00 0.00 2.69
3858 4533 7.655328 AGCAAAAATTATGTCACCGAATTCAAA 59.345 29.630 6.22 0.00 0.00 2.69
3859 4534 8.442384 GCAAAAATTATGTCACCGAATTCAAAT 58.558 29.630 6.22 0.00 0.00 2.32
3862 4537 9.703892 AAAATTATGTCACCGAATTCAAATTGA 57.296 25.926 6.22 0.00 0.00 2.57
3863 4538 9.703892 AAATTATGTCACCGAATTCAAATTGAA 57.296 25.926 11.10 11.10 41.09 2.69
3864 4539 9.703892 AATTATGTCACCGAATTCAAATTGAAA 57.296 25.926 12.75 0.00 40.12 2.69
3865 4540 9.703892 ATTATGTCACCGAATTCAAATTGAAAA 57.296 25.926 12.75 0.00 40.12 2.29
3866 4541 9.703892 TTATGTCACCGAATTCAAATTGAAAAT 57.296 25.926 12.75 4.88 40.12 1.82
3868 4543 8.514136 TGTCACCGAATTCAAATTGAAAATAC 57.486 30.769 12.75 5.43 40.12 1.89
3869 4544 7.324856 TGTCACCGAATTCAAATTGAAAATACG 59.675 33.333 12.75 13.98 40.12 3.06
3870 4545 7.535940 GTCACCGAATTCAAATTGAAAATACGA 59.464 33.333 12.75 3.27 40.12 3.43
3871 4546 8.076781 TCACCGAATTCAAATTGAAAATACGAA 58.923 29.630 12.75 3.76 40.12 3.85
3872 4547 8.859156 CACCGAATTCAAATTGAAAATACGAAT 58.141 29.630 12.75 5.66 40.12 3.34
3873 4548 9.418045 ACCGAATTCAAATTGAAAATACGAATT 57.582 25.926 12.75 0.00 40.12 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 1.587043 CGCGAAGAGTGTGGGAGAGA 61.587 60.000 0.00 0.00 0.00 3.10
44 46 1.153939 CGCGAAGAGTGTGGGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
45 47 1.901948 ACGCGAAGAGTGTGGGAGA 60.902 57.895 15.93 0.00 40.50 3.71
46 48 2.651361 ACGCGAAGAGTGTGGGAG 59.349 61.111 15.93 0.00 40.50 4.30
53 55 2.357517 CTTGGGCACGCGAAGAGT 60.358 61.111 15.93 0.00 45.01 3.24
132 134 2.687805 CGCCTCTGGAGACGAACGA 61.688 63.158 0.16 0.00 36.37 3.85
223 225 1.604915 GGAGGAAGGCCAAGACTCC 59.395 63.158 16.66 16.66 40.72 3.85
224 226 1.219393 CGGAGGAAGGCCAAGACTC 59.781 63.158 5.01 6.87 36.29 3.36
225 227 1.536662 ACGGAGGAAGGCCAAGACT 60.537 57.895 5.01 0.00 36.29 3.24
227 229 2.291043 GGACGGAGGAAGGCCAAGA 61.291 63.158 5.01 0.00 36.29 3.02
228 230 1.842381 AAGGACGGAGGAAGGCCAAG 61.842 60.000 5.01 0.00 36.29 3.61
232 234 0.253327 AATCAAGGACGGAGGAAGGC 59.747 55.000 0.00 0.00 0.00 4.35
234 236 3.334583 TCAAATCAAGGACGGAGGAAG 57.665 47.619 0.00 0.00 0.00 3.46
235 237 4.009675 CAATCAAATCAAGGACGGAGGAA 58.990 43.478 0.00 0.00 0.00 3.36
237 239 3.609853 TCAATCAAATCAAGGACGGAGG 58.390 45.455 0.00 0.00 0.00 4.30
238 240 5.355071 TCAATCAATCAAATCAAGGACGGAG 59.645 40.000 0.00 0.00 0.00 4.63
277 279 4.410400 CCCGAAAAGCTCGCCCCT 62.410 66.667 0.00 0.00 46.71 4.79
372 639 1.580704 CGGACGAATTTAACGGACGAG 59.419 52.381 0.00 0.00 36.63 4.18
439 711 0.031721 GGGACAAGAACGACGACTGT 59.968 55.000 0.00 0.00 0.00 3.55
458 730 2.266554 GAGATCTGAAGTCTTGTGCGG 58.733 52.381 0.00 0.00 0.00 5.69
467 739 2.039818 TCCTACGCGAGATCTGAAGT 57.960 50.000 15.93 0.00 0.00 3.01
471 743 1.025812 AGGTTCCTACGCGAGATCTG 58.974 55.000 15.93 0.00 0.00 2.90
472 744 1.025812 CAGGTTCCTACGCGAGATCT 58.974 55.000 15.93 0.00 0.00 2.75
473 745 0.739561 ACAGGTTCCTACGCGAGATC 59.260 55.000 15.93 5.61 0.00 2.75
474 746 0.739561 GACAGGTTCCTACGCGAGAT 59.260 55.000 15.93 0.00 0.00 2.75
475 747 1.642037 CGACAGGTTCCTACGCGAGA 61.642 60.000 15.93 3.14 0.00 4.04
476 748 1.226323 CGACAGGTTCCTACGCGAG 60.226 63.158 15.93 5.77 0.00 5.03
477 749 1.028330 ATCGACAGGTTCCTACGCGA 61.028 55.000 15.93 10.51 0.00 5.87
478 750 0.179145 AATCGACAGGTTCCTACGCG 60.179 55.000 3.53 3.53 0.00 6.01
479 751 1.925185 GAAATCGACAGGTTCCTACGC 59.075 52.381 10.82 0.00 0.00 4.42
480 752 3.505464 AGAAATCGACAGGTTCCTACG 57.495 47.619 0.00 9.86 0.00 3.51
482 754 4.464951 TGCTAAGAAATCGACAGGTTCCTA 59.535 41.667 0.00 0.00 0.00 2.94
483 755 3.260884 TGCTAAGAAATCGACAGGTTCCT 59.739 43.478 0.00 0.00 0.00 3.36
484 756 3.371285 GTGCTAAGAAATCGACAGGTTCC 59.629 47.826 0.00 0.00 0.00 3.62
485 757 4.246458 AGTGCTAAGAAATCGACAGGTTC 58.754 43.478 0.00 0.00 0.00 3.62
486 758 4.273148 AGTGCTAAGAAATCGACAGGTT 57.727 40.909 0.00 0.00 0.00 3.50
487 759 3.963428 AGTGCTAAGAAATCGACAGGT 57.037 42.857 0.00 0.00 0.00 4.00
488 760 4.744570 TGTAGTGCTAAGAAATCGACAGG 58.255 43.478 0.00 0.00 0.00 4.00
489 761 7.649705 ACATATGTAGTGCTAAGAAATCGACAG 59.350 37.037 6.56 0.00 0.00 3.51
490 762 7.489160 ACATATGTAGTGCTAAGAAATCGACA 58.511 34.615 6.56 0.00 0.00 4.35
491 763 7.932120 ACATATGTAGTGCTAAGAAATCGAC 57.068 36.000 6.56 0.00 0.00 4.20
492 764 8.414003 AGAACATATGTAGTGCTAAGAAATCGA 58.586 33.333 9.21 0.00 0.00 3.59
493 765 8.581057 AGAACATATGTAGTGCTAAGAAATCG 57.419 34.615 9.21 0.00 0.00 3.34
495 767 9.890629 TGAAGAACATATGTAGTGCTAAGAAAT 57.109 29.630 9.21 0.00 0.00 2.17
499 772 8.409371 TCTCTGAAGAACATATGTAGTGCTAAG 58.591 37.037 9.21 3.40 0.00 2.18
580 867 6.462347 GGAAATATGCCGTTCCATGGTAAAAT 60.462 38.462 12.58 2.46 42.51 1.82
596 884 5.105392 TCCCATGACAAACTTGGAAATATGC 60.105 40.000 0.00 0.00 43.75 3.14
598 886 7.014615 GCTATCCCATGACAAACTTGGAAATAT 59.985 37.037 0.00 0.00 43.75 1.28
630 918 6.448369 TTGGAGAAAGAAATCTTCACCCTA 57.552 37.500 0.00 0.00 34.63 3.53
637 925 5.241506 TGCGACATTTGGAGAAAGAAATCTT 59.758 36.000 0.00 0.00 37.91 2.40
651 939 1.213275 TGGCATGCTGCGACATTTG 59.787 52.632 18.92 0.00 46.21 2.32
662 950 2.594592 GATACCCCGGTGGCATGC 60.595 66.667 9.90 9.90 37.83 4.06
716 1015 4.866508 AAAAGAGTAGTCCACACATCGA 57.133 40.909 0.00 0.00 0.00 3.59
717 1016 5.230942 AGAAAAAGAGTAGTCCACACATCG 58.769 41.667 0.00 0.00 0.00 3.84
742 1053 3.071874 AGGAACAAATCGCCTCATCAA 57.928 42.857 0.00 0.00 0.00 2.57
743 1054 2.787473 AGGAACAAATCGCCTCATCA 57.213 45.000 0.00 0.00 0.00 3.07
744 1055 2.545946 GCTAGGAACAAATCGCCTCATC 59.454 50.000 0.00 0.00 33.28 2.92
766 1077 1.858739 TAATTCCGTTGCAGCCCCCT 61.859 55.000 0.00 0.00 0.00 4.79
769 1080 2.032680 TACTAATTCCGTTGCAGCCC 57.967 50.000 0.00 0.00 0.00 5.19
770 1081 5.941948 ATTATACTAATTCCGTTGCAGCC 57.058 39.130 0.00 0.00 0.00 4.85
772 1083 9.781834 TGAAAAATTATACTAATTCCGTTGCAG 57.218 29.630 0.00 0.00 0.00 4.41
773 1084 9.562583 GTGAAAAATTATACTAATTCCGTTGCA 57.437 29.630 0.00 0.00 0.00 4.08
774 1085 9.016623 GGTGAAAAATTATACTAATTCCGTTGC 57.983 33.333 0.00 0.00 0.00 4.17
783 1094 7.884354 ACCCGTCTTGGTGAAAAATTATACTAA 59.116 33.333 0.00 0.00 37.20 2.24
786 1097 6.505044 ACCCGTCTTGGTGAAAAATTATAC 57.495 37.500 0.00 0.00 37.20 1.47
805 1116 2.672961 TAGCATGAAAGAGACACCCG 57.327 50.000 0.00 0.00 0.00 5.28
814 1125 5.431765 ACCTTGGTGAGTATAGCATGAAAG 58.568 41.667 0.00 0.00 0.00 2.62
835 1146 3.064134 GCGGAAGAGAGAGCAAAATAACC 59.936 47.826 0.00 0.00 0.00 2.85
836 1147 3.684788 TGCGGAAGAGAGAGCAAAATAAC 59.315 43.478 0.00 0.00 36.60 1.89
841 1152 0.036952 CCTGCGGAAGAGAGAGCAAA 60.037 55.000 0.00 0.00 39.26 3.68
842 1153 1.188219 ACCTGCGGAAGAGAGAGCAA 61.188 55.000 0.00 0.00 39.26 3.91
844 1155 0.101579 GTACCTGCGGAAGAGAGAGC 59.898 60.000 0.00 0.00 0.00 4.09
853 1164 0.389296 CATCAACGTGTACCTGCGGA 60.389 55.000 0.00 0.00 0.00 5.54
854 1165 0.389296 TCATCAACGTGTACCTGCGG 60.389 55.000 0.00 0.00 0.00 5.69
870 1181 8.748412 GGAGTATGTCTAGATAGAAGCAATCAT 58.252 37.037 0.00 0.00 33.47 2.45
876 1187 5.247084 TCCGGAGTATGTCTAGATAGAAGC 58.753 45.833 0.00 0.00 33.47 3.86
883 1194 2.852449 CTGCTCCGGAGTATGTCTAGA 58.148 52.381 31.43 4.99 0.00 2.43
906 1217 2.270205 CGGCACCAGAGCAAGGAT 59.730 61.111 0.00 0.00 35.83 3.24
907 1218 3.241530 ACGGCACCAGAGCAAGGA 61.242 61.111 0.00 0.00 35.83 3.36
908 1219 2.809861 ATCACGGCACCAGAGCAAGG 62.810 60.000 0.00 0.00 35.83 3.61
910 1221 1.375908 GATCACGGCACCAGAGCAA 60.376 57.895 0.00 0.00 35.83 3.91
914 1225 1.184970 TCACAGATCACGGCACCAGA 61.185 55.000 0.00 0.00 0.00 3.86
918 1229 0.737715 GAGGTCACAGATCACGGCAC 60.738 60.000 0.00 0.00 0.00 5.01
919 1230 0.900182 AGAGGTCACAGATCACGGCA 60.900 55.000 0.00 0.00 0.00 5.69
936 1247 5.489792 AACTGTTCCTCTTATTGAGCAGA 57.510 39.130 9.79 0.00 41.35 4.26
938 1249 7.004555 TCTAAACTGTTCCTCTTATTGAGCA 57.995 36.000 0.00 0.00 41.35 4.26
940 1251 8.447053 GCTTTCTAAACTGTTCCTCTTATTGAG 58.553 37.037 0.00 0.00 42.30 3.02
943 1254 8.926092 AAGCTTTCTAAACTGTTCCTCTTATT 57.074 30.769 0.00 0.00 0.00 1.40
945 1256 6.645415 CGAAGCTTTCTAAACTGTTCCTCTTA 59.355 38.462 0.00 0.00 0.00 2.10
950 1261 4.377533 GCTCGAAGCTTTCTAAACTGTTCC 60.378 45.833 0.00 0.00 38.45 3.62
973 1284 0.835941 AGGTAGATGCAGGCTGGAAG 59.164 55.000 14.16 0.00 0.00 3.46
975 1286 1.709578 CTAGGTAGATGCAGGCTGGA 58.290 55.000 17.64 15.09 0.00 3.86
976 1287 0.034616 GCTAGGTAGATGCAGGCTGG 59.965 60.000 17.64 0.00 0.00 4.85
990 1317 0.872021 GGAACGACATCTGCGCTAGG 60.872 60.000 9.73 0.41 0.00 3.02
1386 1713 7.124750 AGCATTCAGGTTAAGGATTGCTTTATT 59.875 33.333 12.02 0.00 44.01 1.40
1389 1716 4.774200 AGCATTCAGGTTAAGGATTGCTTT 59.226 37.500 12.02 0.00 44.01 3.51
1396 1723 4.534500 TCTTGGTAGCATTCAGGTTAAGGA 59.466 41.667 0.00 0.00 0.00 3.36
1403 1730 3.285484 AGCATTCTTGGTAGCATTCAGG 58.715 45.455 0.00 0.00 0.00 3.86
1404 1731 6.630444 AATAGCATTCTTGGTAGCATTCAG 57.370 37.500 0.00 0.00 39.08 3.02
1405 1732 7.093814 ACAAAATAGCATTCTTGGTAGCATTCA 60.094 33.333 0.00 0.00 39.08 2.57
1406 1733 7.260603 ACAAAATAGCATTCTTGGTAGCATTC 58.739 34.615 0.00 0.00 39.08 2.67
1413 1742 6.948309 AGGTAGAACAAAATAGCATTCTTGGT 59.052 34.615 0.00 0.00 37.36 3.67
1461 1793 6.756542 AGAATAAGCAAAACAACAAACACTCC 59.243 34.615 0.00 0.00 0.00 3.85
1469 1801 5.010922 AGGCATGAGAATAAGCAAAACAACA 59.989 36.000 0.00 0.00 0.00 3.33
1475 1807 6.886459 ACTTAAGAGGCATGAGAATAAGCAAA 59.114 34.615 10.09 0.00 0.00 3.68
1526 1859 0.827507 GAGGGCCAGGCTGTTGAAAA 60.828 55.000 12.43 0.00 0.00 2.29
1657 2007 7.545965 GCGACCTTAGCACAATATATGAATAGT 59.454 37.037 0.00 0.00 34.19 2.12
1658 2008 7.010552 GGCGACCTTAGCACAATATATGAATAG 59.989 40.741 0.00 0.00 36.08 1.73
1659 2009 6.816640 GGCGACCTTAGCACAATATATGAATA 59.183 38.462 0.00 0.00 36.08 1.75
1663 2013 4.928661 GGCGACCTTAGCACAATATATG 57.071 45.455 0.00 0.00 36.08 1.78
1679 2029 0.759346 AGTCATATCCTTGGGGCGAC 59.241 55.000 0.00 0.00 0.00 5.19
1684 2034 4.272489 TCAGCAAAAGTCATATCCTTGGG 58.728 43.478 0.00 0.00 0.00 4.12
1685 2035 5.902613 TTCAGCAAAAGTCATATCCTTGG 57.097 39.130 0.00 0.00 0.00 3.61
1686 2036 7.373493 AGTTTTCAGCAAAAGTCATATCCTTG 58.627 34.615 0.00 0.00 30.48 3.61
1687 2037 7.530426 AGTTTTCAGCAAAAGTCATATCCTT 57.470 32.000 0.00 0.00 30.48 3.36
1692 2042 8.615878 TTAGCTAGTTTTCAGCAAAAGTCATA 57.384 30.769 0.00 0.00 41.66 2.15
1694 2044 6.935741 TTAGCTAGTTTTCAGCAAAAGTCA 57.064 33.333 0.00 0.00 41.66 3.41
1695 2045 9.495754 CATATTAGCTAGTTTTCAGCAAAAGTC 57.504 33.333 0.00 0.00 41.66 3.01
1696 2046 7.970614 GCATATTAGCTAGTTTTCAGCAAAAGT 59.029 33.333 0.00 0.00 41.66 2.66
1697 2047 8.186821 AGCATATTAGCTAGTTTTCAGCAAAAG 58.813 33.333 0.00 0.00 44.50 2.27
1726 2286 7.180051 ACCAAGGCCAAAATGTAGAATTTCATA 59.820 33.333 5.01 0.00 0.00 2.15
1730 2290 5.823861 ACCAAGGCCAAAATGTAGAATTT 57.176 34.783 5.01 0.00 0.00 1.82
1736 2296 4.407296 AGACAAAACCAAGGCCAAAATGTA 59.593 37.500 5.01 0.00 0.00 2.29
1737 2297 3.199727 AGACAAAACCAAGGCCAAAATGT 59.800 39.130 5.01 0.00 0.00 2.71
1751 2311 7.480810 ACAGGTAGAAACATTTGAGACAAAAC 58.519 34.615 0.00 0.00 0.00 2.43
1781 2341 7.050377 ACTTCACCACGATTTCATCATAGAAT 58.950 34.615 0.00 0.00 0.00 2.40
1784 2344 6.668541 AACTTCACCACGATTTCATCATAG 57.331 37.500 0.00 0.00 0.00 2.23
1786 2346 6.260936 GGATAACTTCACCACGATTTCATCAT 59.739 38.462 0.00 0.00 0.00 2.45
1790 2350 3.930229 CGGATAACTTCACCACGATTTCA 59.070 43.478 0.00 0.00 0.00 2.69
1791 2351 3.242316 GCGGATAACTTCACCACGATTTC 60.242 47.826 0.00 0.00 0.00 2.17
1792 2352 2.676342 GCGGATAACTTCACCACGATTT 59.324 45.455 0.00 0.00 0.00 2.17
1793 2353 2.277084 GCGGATAACTTCACCACGATT 58.723 47.619 0.00 0.00 0.00 3.34
1795 2355 0.604073 TGCGGATAACTTCACCACGA 59.396 50.000 0.00 0.00 0.00 4.35
1796 2356 1.434555 TTGCGGATAACTTCACCACG 58.565 50.000 0.00 0.00 0.00 4.94
1797 2357 3.907894 TTTTGCGGATAACTTCACCAC 57.092 42.857 0.00 0.00 0.00 4.16
1798 2358 4.138290 TCTTTTTGCGGATAACTTCACCA 58.862 39.130 0.00 0.00 0.00 4.17
1799 2359 4.759516 TCTTTTTGCGGATAACTTCACC 57.240 40.909 0.00 0.00 0.00 4.02
1800 2360 7.381139 TCATTTTCTTTTTGCGGATAACTTCAC 59.619 33.333 0.00 0.00 0.00 3.18
1801 2361 7.429633 TCATTTTCTTTTTGCGGATAACTTCA 58.570 30.769 0.00 0.00 0.00 3.02
1802 2362 7.867445 TCATTTTCTTTTTGCGGATAACTTC 57.133 32.000 0.00 0.00 0.00 3.01
1804 2364 9.736023 GATATCATTTTCTTTTTGCGGATAACT 57.264 29.630 0.00 0.00 0.00 2.24
1805 2365 9.515020 TGATATCATTTTCTTTTTGCGGATAAC 57.485 29.630 0.00 0.00 0.00 1.89
1807 2367 9.681692 CATGATATCATTTTCTTTTTGCGGATA 57.318 29.630 15.74 0.00 33.61 2.59
1808 2368 7.654520 CCATGATATCATTTTCTTTTTGCGGAT 59.345 33.333 15.74 0.00 33.61 4.18
1809 2369 6.979817 CCATGATATCATTTTCTTTTTGCGGA 59.020 34.615 15.74 0.00 33.61 5.54
1810 2370 6.757947 ACCATGATATCATTTTCTTTTTGCGG 59.242 34.615 15.74 11.24 33.61 5.69
1811 2371 7.488792 TCACCATGATATCATTTTCTTTTTGCG 59.511 33.333 15.74 0.39 33.61 4.85
1812 2372 8.706492 TCACCATGATATCATTTTCTTTTTGC 57.294 30.769 15.74 0.00 33.61 3.68
1816 2376 9.865321 CAACTTCACCATGATATCATTTTCTTT 57.135 29.630 15.74 1.50 33.61 2.52
1817 2377 9.246670 TCAACTTCACCATGATATCATTTTCTT 57.753 29.630 15.74 0.00 33.61 2.52
1818 2378 8.812513 TCAACTTCACCATGATATCATTTTCT 57.187 30.769 15.74 0.00 33.61 2.52
1819 2379 8.133627 CCTCAACTTCACCATGATATCATTTTC 58.866 37.037 15.74 0.00 33.61 2.29
1820 2380 7.616935 ACCTCAACTTCACCATGATATCATTTT 59.383 33.333 15.74 2.85 33.61 1.82
1821 2381 7.067859 CACCTCAACTTCACCATGATATCATTT 59.932 37.037 15.74 3.21 33.61 2.32
1822 2382 6.544931 CACCTCAACTTCACCATGATATCATT 59.455 38.462 15.74 0.00 33.61 2.57
1827 2387 3.264193 AGCACCTCAACTTCACCATGATA 59.736 43.478 0.00 0.00 0.00 2.15
1862 2422 7.807907 ACAAGTACCGCTGATTCAAAATAAAAG 59.192 33.333 0.00 0.00 0.00 2.27
1863 2423 7.593273 CACAAGTACCGCTGATTCAAAATAAAA 59.407 33.333 0.00 0.00 0.00 1.52
1943 2504 7.332678 TCAGCATCCATTGAGATAACATATTCG 59.667 37.037 0.00 0.00 0.00 3.34
2049 2611 0.322366 TCCGCAAATGCATGAGACCA 60.322 50.000 0.00 0.00 42.21 4.02
2085 2649 5.985530 GGAAGTTTGACCTGGAAATGAAAAG 59.014 40.000 0.00 0.00 0.00 2.27
2087 2651 5.208121 AGGAAGTTTGACCTGGAAATGAAA 58.792 37.500 0.00 0.00 34.99 2.69
2201 2801 3.496160 GCACCTTGGGAGACACTTTCTTA 60.496 47.826 0.00 0.00 33.22 2.10
2511 3141 0.459585 TCTTCGTCACGGCTTATGGC 60.460 55.000 0.00 0.00 40.90 4.40
2512 3142 1.278238 GTCTTCGTCACGGCTTATGG 58.722 55.000 0.00 0.00 0.00 2.74
2513 3143 0.914551 CGTCTTCGTCACGGCTTATG 59.085 55.000 0.00 0.00 33.46 1.90
2522 3152 1.166129 CCTTCTCTCCGTCTTCGTCA 58.834 55.000 0.00 0.00 35.01 4.35
2923 3556 1.448013 CTTCCCTTCCTTCGACCGC 60.448 63.158 0.00 0.00 0.00 5.68
2926 3559 3.404224 ACTTTCTTCCCTTCCTTCGAC 57.596 47.619 0.00 0.00 0.00 4.20
2927 3560 4.158015 ACTACTTTCTTCCCTTCCTTCGA 58.842 43.478 0.00 0.00 0.00 3.71
2928 3561 4.538746 ACTACTTTCTTCCCTTCCTTCG 57.461 45.455 0.00 0.00 0.00 3.79
2937 3570 5.997384 TGAGGGTTCTACTACTTTCTTCC 57.003 43.478 0.00 0.00 0.00 3.46
2938 3571 7.042950 GGAATGAGGGTTCTACTACTTTCTTC 58.957 42.308 0.00 0.00 0.00 2.87
2939 3572 6.070136 GGGAATGAGGGTTCTACTACTTTCTT 60.070 42.308 0.00 0.00 0.00 2.52
2940 3573 5.425862 GGGAATGAGGGTTCTACTACTTTCT 59.574 44.000 0.00 0.00 0.00 2.52
2941 3574 5.396548 GGGGAATGAGGGTTCTACTACTTTC 60.397 48.000 0.00 0.00 0.00 2.62
2942 3575 4.473922 GGGGAATGAGGGTTCTACTACTTT 59.526 45.833 0.00 0.00 0.00 2.66
2943 3576 4.038633 GGGGAATGAGGGTTCTACTACTT 58.961 47.826 0.00 0.00 0.00 2.24
2944 3577 3.632906 GGGGGAATGAGGGTTCTACTACT 60.633 52.174 0.00 0.00 0.00 2.57
2945 3578 2.704596 GGGGGAATGAGGGTTCTACTAC 59.295 54.545 0.00 0.00 0.00 2.73
2946 3579 3.056201 GGGGGAATGAGGGTTCTACTA 57.944 52.381 0.00 0.00 0.00 1.82
2997 3631 4.825085 AGAATTACAAGCAAACGAAAGGGA 59.175 37.500 0.00 0.00 0.00 4.20
2998 3632 4.917415 CAGAATTACAAGCAAACGAAAGGG 59.083 41.667 0.00 0.00 0.00 3.95
3004 3638 4.739716 ACAAAGCAGAATTACAAGCAAACG 59.260 37.500 0.00 0.00 0.00 3.60
3037 3671 1.255667 TACCGAGTCCCAGTTCCAGC 61.256 60.000 0.00 0.00 0.00 4.85
3038 3672 0.818296 CTACCGAGTCCCAGTTCCAG 59.182 60.000 0.00 0.00 0.00 3.86
3040 3674 1.255667 TGCTACCGAGTCCCAGTTCC 61.256 60.000 0.00 0.00 0.00 3.62
3042 3676 0.537188 CATGCTACCGAGTCCCAGTT 59.463 55.000 0.00 0.00 0.00 3.16
3044 3678 1.227380 GCATGCTACCGAGTCCCAG 60.227 63.158 11.37 0.00 0.00 4.45
3045 3679 2.900273 GCATGCTACCGAGTCCCA 59.100 61.111 11.37 0.00 0.00 4.37
3046 3680 2.279517 CGCATGCTACCGAGTCCC 60.280 66.667 17.13 0.00 0.00 4.46
3096 3730 1.001815 CAACCGCATCCACGAAACTTT 60.002 47.619 0.00 0.00 34.06 2.66
3119 3753 5.354842 ACCTTAGGTTAAATCCGGAAGAG 57.645 43.478 9.01 0.00 27.29 2.85
3120 3754 5.338626 GGAACCTTAGGTTAAATCCGGAAGA 60.339 44.000 17.49 0.00 46.95 2.87
3121 3755 4.880120 GGAACCTTAGGTTAAATCCGGAAG 59.120 45.833 17.49 0.00 46.95 3.46
3122 3756 4.324486 GGGAACCTTAGGTTAAATCCGGAA 60.324 45.833 17.49 0.00 46.95 4.30
3145 3779 4.219070 TCAAAGGCAAATCATGAAGGTGAG 59.781 41.667 0.00 0.00 0.00 3.51
3190 3830 5.106396 CCTTTCTGCTCTTTACCAGACAATG 60.106 44.000 0.00 0.00 37.78 2.82
3191 3831 5.006386 CCTTTCTGCTCTTTACCAGACAAT 58.994 41.667 0.00 0.00 37.78 2.71
3265 3923 1.067084 ATGATCCTCGTCTGCGCTG 59.933 57.895 9.73 8.88 38.14 5.18
3315 3973 0.687757 CATGGACCGAGGAGGGAGAA 60.688 60.000 0.00 0.00 46.96 2.87
3375 4033 4.825085 TCCCATTAGACAAAACCACTGTTC 59.175 41.667 0.00 0.00 32.15 3.18
3395 4053 3.002656 CGTACATGTGCAATGATTCTCCC 59.997 47.826 14.55 0.00 0.00 4.30
3416 4074 1.600023 TGAAAAAGGTGGCAGGTACG 58.400 50.000 0.00 0.00 0.00 3.67
3417 4075 3.153919 TCATGAAAAAGGTGGCAGGTAC 58.846 45.455 0.00 0.00 0.00 3.34
3418 4076 3.420893 CTCATGAAAAAGGTGGCAGGTA 58.579 45.455 0.00 0.00 0.00 3.08
3419 4077 2.242043 CTCATGAAAAAGGTGGCAGGT 58.758 47.619 0.00 0.00 0.00 4.00
3455 4114 1.065854 AGCTGAACCCAAAGGAGATCG 60.066 52.381 0.00 0.00 36.73 3.69
3481 4140 0.107654 CGACCCACCTCCCAGAAATC 60.108 60.000 0.00 0.00 0.00 2.17
3499 4158 2.417933 CCTCCATGCTGAAAAGAACTCG 59.582 50.000 0.00 0.00 0.00 4.18
3526 4185 7.550906 ACTTATCTTTCTCACTACAGGAAATGC 59.449 37.037 0.00 0.00 0.00 3.56
3615 4282 2.439701 CTCAGCAGCCACCATGGG 60.440 66.667 18.09 4.89 38.19 4.00
3639 4306 3.763897 AGAAAAATTGTTCCTCCCATCCG 59.236 43.478 4.66 0.00 0.00 4.18
3660 4327 6.373774 AGCACATGATAACTTCTTCAGGAAAG 59.626 38.462 0.00 0.00 36.22 2.62
3705 4380 1.204312 GGTTCGTTTCGCTGTCAGC 59.796 57.895 15.22 15.22 38.02 4.26
3718 4393 2.483014 TTTCTGGTATGGTGGGTTCG 57.517 50.000 0.00 0.00 0.00 3.95
3745 4420 4.398988 GCACTACATTGTGGAATTGATGGA 59.601 41.667 7.20 0.00 38.31 3.41
3746 4421 4.675510 GCACTACATTGTGGAATTGATGG 58.324 43.478 7.20 0.00 38.31 3.51
3747 4422 4.345288 CGCACTACATTGTGGAATTGATG 58.655 43.478 7.20 0.00 38.31 3.07
3748 4423 3.181497 GCGCACTACATTGTGGAATTGAT 60.181 43.478 0.30 0.00 38.31 2.57
3749 4424 2.161410 GCGCACTACATTGTGGAATTGA 59.839 45.455 0.30 0.00 38.31 2.57
3750 4425 2.518949 GCGCACTACATTGTGGAATTG 58.481 47.619 0.30 0.00 38.31 2.32
3751 4426 1.472480 GGCGCACTACATTGTGGAATT 59.528 47.619 10.83 0.00 38.31 2.17
3752 4427 1.094785 GGCGCACTACATTGTGGAAT 58.905 50.000 10.83 0.00 38.31 3.01
3753 4428 0.958382 GGGCGCACTACATTGTGGAA 60.958 55.000 10.83 0.00 38.31 3.53
3754 4429 1.376683 GGGCGCACTACATTGTGGA 60.377 57.895 10.83 0.00 38.31 4.02
3755 4430 2.749865 CGGGCGCACTACATTGTGG 61.750 63.158 8.62 0.00 38.31 4.17
3756 4431 2.784596 CGGGCGCACTACATTGTG 59.215 61.111 8.62 0.00 40.62 3.33
3757 4432 3.124921 GCGGGCGCACTACATTGT 61.125 61.111 8.62 0.00 41.49 2.71
3758 4433 4.222589 CGCGGGCGCACTACATTG 62.223 66.667 8.62 0.00 42.06 2.82
3769 4444 2.512515 ATCTCTGAAAGCGCGGGC 60.513 61.111 17.92 17.92 40.37 6.13
3770 4445 1.884926 GGATCTCTGAAAGCGCGGG 60.885 63.158 8.83 0.00 0.00 6.13
3771 4446 0.740868 TTGGATCTCTGAAAGCGCGG 60.741 55.000 8.83 0.00 0.00 6.46
3772 4447 0.649475 CTTGGATCTCTGAAAGCGCG 59.351 55.000 0.00 0.00 0.00 6.86
3773 4448 1.731720 ACTTGGATCTCTGAAAGCGC 58.268 50.000 0.00 0.00 0.00 5.92
3774 4449 3.748048 TCAAACTTGGATCTCTGAAAGCG 59.252 43.478 0.00 0.00 0.00 4.68
3775 4450 5.893897 ATCAAACTTGGATCTCTGAAAGC 57.106 39.130 0.00 0.00 0.00 3.51
3776 4451 7.211966 ACAATCAAACTTGGATCTCTGAAAG 57.788 36.000 0.00 0.00 0.00 2.62
3777 4452 8.690203 TTACAATCAAACTTGGATCTCTGAAA 57.310 30.769 0.00 0.00 0.00 2.69
3778 4453 8.690203 TTTACAATCAAACTTGGATCTCTGAA 57.310 30.769 0.00 0.00 0.00 3.02
3779 4454 8.868522 ATTTACAATCAAACTTGGATCTCTGA 57.131 30.769 0.00 0.00 0.00 3.27
3780 4455 9.918630 AAATTTACAATCAAACTTGGATCTCTG 57.081 29.630 0.00 0.00 0.00 3.35
3797 4472 9.268268 AGTCAGTCTCGTTGATTAAATTTACAA 57.732 29.630 0.00 0.00 0.00 2.41
3798 4473 8.708742 CAGTCAGTCTCGTTGATTAAATTTACA 58.291 33.333 0.00 0.00 0.00 2.41
3799 4474 7.688578 GCAGTCAGTCTCGTTGATTAAATTTAC 59.311 37.037 0.00 0.00 0.00 2.01
3800 4475 7.411480 CGCAGTCAGTCTCGTTGATTAAATTTA 60.411 37.037 0.00 0.00 0.00 1.40
3801 4476 6.603095 GCAGTCAGTCTCGTTGATTAAATTT 58.397 36.000 0.00 0.00 0.00 1.82
3802 4477 5.163953 CGCAGTCAGTCTCGTTGATTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
3803 4478 4.327357 CGCAGTCAGTCTCGTTGATTAAAT 59.673 41.667 0.00 0.00 0.00 1.40
3804 4479 3.673338 CGCAGTCAGTCTCGTTGATTAAA 59.327 43.478 0.00 0.00 0.00 1.52
3805 4480 3.057806 TCGCAGTCAGTCTCGTTGATTAA 60.058 43.478 0.00 0.00 0.00 1.40
3806 4481 2.486592 TCGCAGTCAGTCTCGTTGATTA 59.513 45.455 0.00 0.00 0.00 1.75
3807 4482 1.269723 TCGCAGTCAGTCTCGTTGATT 59.730 47.619 0.00 0.00 0.00 2.57
3808 4483 0.881796 TCGCAGTCAGTCTCGTTGAT 59.118 50.000 0.00 0.00 0.00 2.57
3809 4484 0.040336 GTCGCAGTCAGTCTCGTTGA 60.040 55.000 0.00 0.00 0.00 3.18
3810 4485 1.330779 CGTCGCAGTCAGTCTCGTTG 61.331 60.000 0.00 0.00 0.00 4.10
3811 4486 1.082038 CGTCGCAGTCAGTCTCGTT 60.082 57.895 0.00 0.00 0.00 3.85
3812 4487 2.556792 CGTCGCAGTCAGTCTCGT 59.443 61.111 0.00 0.00 0.00 4.18
3813 4488 2.202362 CCGTCGCAGTCAGTCTCG 60.202 66.667 0.00 0.00 0.00 4.04
3814 4489 2.179517 CCCGTCGCAGTCAGTCTC 59.820 66.667 0.00 0.00 0.00 3.36
3815 4490 2.282251 TCCCGTCGCAGTCAGTCT 60.282 61.111 0.00 0.00 0.00 3.24
3816 4491 2.179517 CTCCCGTCGCAGTCAGTC 59.820 66.667 0.00 0.00 0.00 3.51
3817 4492 4.057428 GCTCCCGTCGCAGTCAGT 62.057 66.667 0.00 0.00 0.00 3.41
3818 4493 3.573772 TTGCTCCCGTCGCAGTCAG 62.574 63.158 0.00 0.00 38.80 3.51
3819 4494 2.652382 TTTTGCTCCCGTCGCAGTCA 62.652 55.000 0.00 0.00 38.80 3.41
3820 4495 1.503818 TTTTTGCTCCCGTCGCAGTC 61.504 55.000 0.00 0.00 38.80 3.51
3821 4496 0.889186 ATTTTTGCTCCCGTCGCAGT 60.889 50.000 0.00 0.00 38.80 4.40
3822 4497 0.240945 AATTTTTGCTCCCGTCGCAG 59.759 50.000 0.00 0.00 38.80 5.18
3823 4498 1.524848 TAATTTTTGCTCCCGTCGCA 58.475 45.000 0.00 0.00 35.22 5.10
3824 4499 2.159435 ACATAATTTTTGCTCCCGTCGC 60.159 45.455 0.00 0.00 0.00 5.19
3825 4500 3.126171 TGACATAATTTTTGCTCCCGTCG 59.874 43.478 0.00 0.00 0.00 5.12
3826 4501 4.412207 GTGACATAATTTTTGCTCCCGTC 58.588 43.478 0.00 0.00 0.00 4.79
3827 4502 3.192633 GGTGACATAATTTTTGCTCCCGT 59.807 43.478 0.00 0.00 0.00 5.28
3828 4503 3.730662 CGGTGACATAATTTTTGCTCCCG 60.731 47.826 0.00 0.00 0.00 5.14
3829 4504 3.442273 TCGGTGACATAATTTTTGCTCCC 59.558 43.478 0.00 0.00 0.00 4.30
3830 4505 4.695217 TCGGTGACATAATTTTTGCTCC 57.305 40.909 0.00 0.00 0.00 4.70
3831 4506 6.806249 TGAATTCGGTGACATAATTTTTGCTC 59.194 34.615 0.04 0.00 0.00 4.26
3832 4507 6.686630 TGAATTCGGTGACATAATTTTTGCT 58.313 32.000 0.04 0.00 0.00 3.91
3833 4508 6.942886 TGAATTCGGTGACATAATTTTTGC 57.057 33.333 0.04 0.00 0.00 3.68
3836 4511 9.703892 TCAATTTGAATTCGGTGACATAATTTT 57.296 25.926 0.04 0.00 0.00 1.82
3837 4512 9.703892 TTCAATTTGAATTCGGTGACATAATTT 57.296 25.926 7.74 0.00 30.26 1.82
3838 4513 9.703892 TTTCAATTTGAATTCGGTGACATAATT 57.296 25.926 12.39 0.00 36.11 1.40
3839 4514 9.703892 TTTTCAATTTGAATTCGGTGACATAAT 57.296 25.926 12.39 0.00 36.11 1.28
3840 4515 9.703892 ATTTTCAATTTGAATTCGGTGACATAA 57.296 25.926 12.39 0.71 36.11 1.90
3842 4517 9.139174 GTATTTTCAATTTGAATTCGGTGACAT 57.861 29.630 12.39 0.52 36.11 3.06
3843 4518 7.324856 CGTATTTTCAATTTGAATTCGGTGACA 59.675 33.333 12.39 0.00 36.11 3.58
3844 4519 7.535940 TCGTATTTTCAATTTGAATTCGGTGAC 59.464 33.333 12.39 4.43 36.11 3.67
3845 4520 7.585867 TCGTATTTTCAATTTGAATTCGGTGA 58.414 30.769 12.39 4.95 36.11 4.02
3846 4521 7.789341 TCGTATTTTCAATTTGAATTCGGTG 57.211 32.000 12.39 2.93 36.11 4.94
3847 4522 8.980143 ATTCGTATTTTCAATTTGAATTCGGT 57.020 26.923 12.39 6.01 36.11 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.