Multiple sequence alignment - TraesCS1A01G273000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G273000 chr1A 100.000 4741 0 0 1 4741 466895731 466900471 0.000000e+00 8756.0
1 TraesCS1A01G273000 chr1B 93.664 2336 62 40 526 2816 491530897 491533191 0.000000e+00 3415.0
2 TraesCS1A01G273000 chr1B 91.307 1599 66 31 3158 4739 491533658 491535200 0.000000e+00 2115.0
3 TraesCS1A01G273000 chr1B 92.120 533 24 4 1 532 491527652 491528167 0.000000e+00 736.0
4 TraesCS1A01G273000 chr1B 96.353 329 7 3 2815 3139 491533274 491533601 1.940000e-148 536.0
5 TraesCS1A01G273000 chr1D 91.693 2179 102 35 1 2138 367399463 367401603 0.000000e+00 2948.0
6 TraesCS1A01G273000 chr1D 98.410 1006 11 4 2137 3139 367401685 367402688 0.000000e+00 1764.0
7 TraesCS1A01G273000 chr1D 90.625 960 31 11 3136 4091 367402736 367403640 0.000000e+00 1219.0
8 TraesCS1A01G273000 chr1D 94.815 540 22 3 4203 4741 367403836 367404370 0.000000e+00 837.0
9 TraesCS1A01G273000 chr1D 90.805 87 6 2 4053 4139 59875947 59876031 1.080000e-21 115.0
10 TraesCS1A01G273000 chr2D 91.011 89 6 2 4053 4141 383553884 383553798 8.330000e-23 119.0
11 TraesCS1A01G273000 chr3D 89.362 94 8 2 4046 4139 324311073 324311164 3.000000e-22 117.0
12 TraesCS1A01G273000 chr4B 90.805 87 6 2 4053 4139 420202873 420202957 1.080000e-21 115.0
13 TraesCS1A01G273000 chr3A 90.805 87 6 2 4053 4139 58929340 58929424 1.080000e-21 115.0
14 TraesCS1A01G273000 chr7A 90.698 86 6 2 4054 4139 433736426 433736509 3.880000e-21 113.0
15 TraesCS1A01G273000 chr5B 89.888 89 7 2 4052 4140 580289204 580289118 3.880000e-21 113.0
16 TraesCS1A01G273000 chr5B 92.500 40 3 0 1615 1654 516464054 516464015 1.840000e-04 58.4
17 TraesCS1A01G273000 chr2B 89.888 89 7 2 4053 4141 454012459 454012373 3.880000e-21 113.0
18 TraesCS1A01G273000 chr2A 89.888 89 6 2 4051 4139 758599097 758599182 1.390000e-20 111.0
19 TraesCS1A01G273000 chr5D 91.111 45 4 0 1615 1659 426457719 426457675 1.420000e-05 62.1
20 TraesCS1A01G273000 chr5A 92.500 40 3 0 1615 1654 540594426 540594387 1.840000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G273000 chr1A 466895731 466900471 4740 False 8756.0 8756 100.00000 1 4741 1 chr1A.!!$F1 4740
1 TraesCS1A01G273000 chr1B 491527652 491535200 7548 False 1700.5 3415 93.36100 1 4739 4 chr1B.!!$F1 4738
2 TraesCS1A01G273000 chr1D 367399463 367404370 4907 False 1692.0 2948 93.88575 1 4741 4 chr1D.!!$F2 4740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 384 0.868406 GACGGTGTTTCAAGCTCCTG 59.132 55.000 0.00 0.0 0.00 3.86 F
1644 4428 0.302890 GCATGATCAAGAACCGCGAG 59.697 55.000 8.23 0.0 0.00 5.03 F
2493 5374 2.043992 CACCAGGATTACCCACCGATA 58.956 52.381 0.00 0.0 37.41 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 4565 0.815213 GCGATGTAAGCCTGCATCCA 60.815 55.0 7.69 0.00 40.50 3.41 R
3031 5996 1.173043 CCGTTATTGCAAGGCCTTGA 58.827 50.0 42.96 26.96 42.93 3.02 R
3934 6958 1.259840 GGGGCATGCCATCACAAGTT 61.260 55.0 36.56 0.00 37.98 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.546570 CACTGAACAACACGATAGAGTGA 58.453 43.478 4.00 0.00 44.43 3.41
36 37 5.635280 CACTGAACAACACGATAGAGTGAAT 59.365 40.000 4.00 0.00 44.43 2.57
72 74 4.870426 CAGGTACCTAAACACATGCTACAG 59.130 45.833 15.80 0.00 0.00 2.74
83 85 2.304180 ACATGCTACAGCTCCAAGACTT 59.696 45.455 2.44 0.00 42.66 3.01
89 91 4.142730 GCTACAGCTCCAAGACTTTGAATG 60.143 45.833 0.00 0.00 35.77 2.67
219 221 9.034544 CGACATCTTCAACATTTGTATATCTCA 57.965 33.333 0.00 0.00 0.00 3.27
289 292 5.478332 AGCTTTTTCTAGCAACCAAGCTAAT 59.522 36.000 10.99 0.00 45.69 1.73
291 294 6.570378 GCTTTTTCTAGCAACCAAGCTAATCA 60.570 38.462 4.80 0.00 45.69 2.57
331 334 5.801380 ACAACCACACTTCTATACGGATTT 58.199 37.500 0.00 0.00 0.00 2.17
380 384 0.868406 GACGGTGTTTCAAGCTCCTG 59.132 55.000 0.00 0.00 0.00 3.86
387 391 4.072131 GTGTTTCAAGCTCCTGGACATTA 58.928 43.478 0.00 0.00 0.00 1.90
391 395 5.441718 TTCAAGCTCCTGGACATTAAGAT 57.558 39.130 0.00 0.00 0.00 2.40
396 400 6.313519 AGCTCCTGGACATTAAGATAACAA 57.686 37.500 0.00 0.00 0.00 2.83
406 410 8.609176 GGACATTAAGATAACAAATCGCAACTA 58.391 33.333 0.00 0.00 0.00 2.24
414 418 3.628017 ACAAATCGCAACTAGCAACAAC 58.372 40.909 0.00 0.00 46.13 3.32
514 522 8.341173 GCATTGAGAATACAATCTACCTCTTTG 58.659 37.037 0.00 0.00 38.25 2.77
522 530 5.360591 ACAATCTACCTCTTTGGCTATTCG 58.639 41.667 0.00 0.00 40.22 3.34
535 3279 3.129109 GGCTATTCGGTGCTTAAGTACC 58.871 50.000 27.58 27.58 45.70 3.34
556 3300 0.995024 AAGCAGGGCAATGTCCTAGT 59.005 50.000 5.89 0.00 34.19 2.57
596 3359 7.829725 TGTATCAAGCTTGATGTAAAATGCTT 58.170 30.769 39.83 20.36 46.68 3.91
603 3366 7.486647 AGCTTGATGTAAAATGCTTCTATTGG 58.513 34.615 0.00 0.00 0.00 3.16
691 3458 4.959210 TGTGATCCTTTTTCCTTGAAACCA 59.041 37.500 0.00 0.00 30.83 3.67
766 3535 8.138074 GTGACAAAAGAGGAAAGAAAAAGCTAT 58.862 33.333 0.00 0.00 0.00 2.97
767 3536 9.349713 TGACAAAAGAGGAAAGAAAAAGCTATA 57.650 29.630 0.00 0.00 0.00 1.31
827 3597 3.582120 CGCACACCACACCACACC 61.582 66.667 0.00 0.00 0.00 4.16
828 3598 2.439338 GCACACCACACCACACCA 60.439 61.111 0.00 0.00 0.00 4.17
829 3599 2.770589 GCACACCACACCACACCAC 61.771 63.158 0.00 0.00 0.00 4.16
830 3600 1.377856 CACACCACACCACACCACA 60.378 57.895 0.00 0.00 0.00 4.17
831 3601 1.377987 ACACCACACCACACCACAC 60.378 57.895 0.00 0.00 0.00 3.82
832 3602 1.377856 CACCACACCACACCACACA 60.378 57.895 0.00 0.00 0.00 3.72
833 3603 1.377987 ACCACACCACACCACACAC 60.378 57.895 0.00 0.00 0.00 3.82
1461 4245 2.496341 GACGGTAGGGTTACGGCC 59.504 66.667 0.00 0.00 34.46 6.13
1644 4428 0.302890 GCATGATCAAGAACCGCGAG 59.697 55.000 8.23 0.00 0.00 5.03
1693 4477 2.811431 CAGGTTACGCCAAATGTCTCAA 59.189 45.455 0.00 0.00 40.61 3.02
1694 4478 3.252215 CAGGTTACGCCAAATGTCTCAAA 59.748 43.478 0.00 0.00 40.61 2.69
1707 4491 7.041848 CCAAATGTCTCAAAAGGGACAAATTTC 60.042 37.037 1.92 0.00 44.10 2.17
1751 4536 2.922740 TTGTCCCAGTTGTACAGTCC 57.077 50.000 0.00 0.00 0.00 3.85
1780 4565 6.676237 AATTTGACGCTTTCATTTGGTTTT 57.324 29.167 0.00 0.00 32.84 2.43
1786 4571 3.120580 CGCTTTCATTTGGTTTTGGATGC 60.121 43.478 0.00 0.00 0.00 3.91
2131 4926 4.331168 CCAGCTCTTTCACATAACTACAGC 59.669 45.833 0.00 0.00 0.00 4.40
2138 4933 7.331026 TCTTTCACATAACTACAGCAAGCTAT 58.669 34.615 0.00 0.00 0.00 2.97
2141 4936 7.921786 TCACATAACTACAGCAAGCTATTTT 57.078 32.000 0.00 0.00 0.00 1.82
2142 4937 9.443323 TTCACATAACTACAGCAAGCTATTTTA 57.557 29.630 0.00 0.00 0.00 1.52
2441 5322 6.147985 TGTTCGTTGATTCATTATGGTTTCGA 59.852 34.615 0.00 0.00 0.00 3.71
2493 5374 2.043992 CACCAGGATTACCCACCGATA 58.956 52.381 0.00 0.00 37.41 2.92
2824 5706 8.834465 CCATATGCCAAATAGATATGTAGAAGC 58.166 37.037 0.00 0.00 30.95 3.86
2830 5795 8.770828 GCCAAATAGATATGTAGAAGCGTTTTA 58.229 33.333 0.00 0.00 0.00 1.52
2849 5814 9.735646 GCGTTTTACTTTTTATTTAAAGATGGC 57.264 29.630 0.00 0.00 38.27 4.40
3031 5996 7.947332 TCCTCTATTCTTATATCTCAGTGCACT 59.053 37.037 15.25 15.25 0.00 4.40
3139 6108 8.721478 TGCTAAAGCTTAAGTACTCTTTGATTG 58.279 33.333 14.44 6.25 42.66 2.67
3140 6109 7.694367 GCTAAAGCTTAAGTACTCTTTGATTGC 59.306 37.037 14.44 10.46 38.21 3.56
3141 6110 7.510549 AAAGCTTAAGTACTCTTTGATTGCA 57.489 32.000 0.00 0.00 35.36 4.08
3277 6298 3.085952 TCTTGCATTTCCTTACCCCTG 57.914 47.619 0.00 0.00 0.00 4.45
3368 6389 7.305993 CGGCTGTTTTTCAACTTCATTTCTTAC 60.306 37.037 0.00 0.00 33.58 2.34
3587 6609 2.938956 AGCAGCAAGACTTGTTAGGT 57.061 45.000 16.39 9.25 0.00 3.08
3593 6616 2.814336 GCAAGACTTGTTAGGTGAAGGG 59.186 50.000 16.39 0.00 0.00 3.95
3668 6691 1.523758 GAAAGGTCACGCCATTCAGT 58.476 50.000 0.00 0.00 42.73 3.41
3766 6789 5.724328 TGTAGAATAGAGTTGCCTCAGTTG 58.276 41.667 0.00 0.00 40.40 3.16
3839 6862 3.701040 AGTTTCAGTTTGACACATTGGCT 59.299 39.130 0.00 0.00 29.91 4.75
3891 6914 5.590530 TTGCCACAAGTGTGAAATACTTT 57.409 34.783 13.02 0.00 46.70 2.66
3934 6958 6.402456 TGTGATGATCAATTTGTTCACCAA 57.598 33.333 17.82 2.78 34.11 3.67
3986 7012 1.109323 AAGTGTGGTGAAAGCCTGGC 61.109 55.000 11.65 11.65 0.00 4.85
4059 7086 8.798975 TTAAATGTGGATAGAATCTACTCCCT 57.201 34.615 12.80 0.00 40.90 4.20
4091 7118 9.612620 CCCATAATATAAGATCGTTTTTCAAGC 57.387 33.333 0.00 0.00 0.00 4.01
4140 7223 2.661176 TTGGGGACAGAGGGAGTAAT 57.339 50.000 0.00 0.00 44.54 1.89
4170 7253 6.055588 ACCGTAGATACTCAAAATTCCATGG 58.944 40.000 4.97 4.97 0.00 3.66
4188 7271 2.426522 TGGAAGTGATTCAGAAAGCGG 58.573 47.619 0.00 0.00 0.00 5.52
4249 7360 9.855021 CTTTATATTACACAAAACAAAGGGGAG 57.145 33.333 0.00 0.00 0.00 4.30
4251 7362 1.859302 ACACAAAACAAAGGGGAGCA 58.141 45.000 0.00 0.00 0.00 4.26
4360 7471 1.609072 GGCTTTGTGAGAAGGGTTGAC 59.391 52.381 0.00 0.00 0.00 3.18
4363 7474 2.702592 TTGTGAGAAGGGTTGACGTT 57.297 45.000 0.00 0.00 0.00 3.99
4637 7749 5.512473 AGAGAATAGAAACGATACGCACTC 58.488 41.667 0.00 0.00 0.00 3.51
4653 7765 3.241773 CGCACTCAGACACAAATGATACG 60.242 47.826 0.00 0.00 0.00 3.06
4712 7825 0.764890 TCTCTCAAACCCACCACCAG 59.235 55.000 0.00 0.00 0.00 4.00
4714 7827 1.152777 CTCAAACCCACCACCAGCA 60.153 57.895 0.00 0.00 0.00 4.41
4729 7842 4.712425 GCAGCAGCGGCAACAAGG 62.712 66.667 13.20 0.00 44.61 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.393866 AGGTACCTGAATGTTGGTCAAATT 58.606 37.500 15.42 0.00 37.74 1.82
36 37 4.447138 AGGTACCTGAATGTTGGTCAAA 57.553 40.909 15.42 0.00 37.74 2.69
72 74 4.378874 GCAGTACATTCAAAGTCTTGGAGC 60.379 45.833 0.00 0.00 33.01 4.70
331 334 1.152860 TGCCGAAGCCAAACCAAGA 60.153 52.632 0.00 0.00 38.69 3.02
380 384 7.472543 AGTTGCGATTTGTTATCTTAATGTCC 58.527 34.615 0.00 0.00 0.00 4.02
387 391 6.072728 TGTTGCTAGTTGCGATTTGTTATCTT 60.073 34.615 0.00 0.00 46.63 2.40
391 395 5.209240 GTTGTTGCTAGTTGCGATTTGTTA 58.791 37.500 0.00 0.00 46.63 2.41
396 400 2.616376 TGTGTTGTTGCTAGTTGCGATT 59.384 40.909 0.00 0.00 46.63 3.34
414 418 2.290514 TGGAAGGAGGAAGAAGCATGTG 60.291 50.000 0.00 0.00 0.00 3.21
514 522 3.129109 GGTACTTAAGCACCGAATAGCC 58.871 50.000 9.15 0.00 0.00 3.93
535 3279 0.107703 TAGGACATTGCCCTGCTTCG 60.108 55.000 1.16 0.00 35.30 3.79
556 3300 7.063593 AGCTTGATACAGAGAGTATGTCCTTA 58.936 38.462 0.00 0.00 43.39 2.69
661 3428 9.919416 TTCAAGGAAAAAGGATCACATATATCA 57.081 29.630 0.00 0.00 0.00 2.15
685 3452 9.139174 CAACCATTACACTAAATCATTGGTTTC 57.861 33.333 0.00 0.00 42.02 2.78
691 3458 8.121305 TGAAGCAACCATTACACTAAATCATT 57.879 30.769 0.00 0.00 0.00 2.57
766 3535 1.133945 AGCTCTCGATGGCTGAGTCTA 60.134 52.381 10.76 0.00 37.41 2.59
767 3536 0.395586 AGCTCTCGATGGCTGAGTCT 60.396 55.000 10.76 1.85 37.41 3.24
827 3597 2.261345 CTTTTTGCCAGTGTGTGTGTG 58.739 47.619 0.00 0.00 0.00 3.82
828 3598 1.404047 GCTTTTTGCCAGTGTGTGTGT 60.404 47.619 0.00 0.00 35.15 3.72
829 3599 1.280066 GCTTTTTGCCAGTGTGTGTG 58.720 50.000 0.00 0.00 35.15 3.82
830 3600 0.894141 TGCTTTTTGCCAGTGTGTGT 59.106 45.000 0.00 0.00 42.00 3.72
831 3601 1.280066 GTGCTTTTTGCCAGTGTGTG 58.720 50.000 0.00 0.00 42.00 3.82
832 3602 0.179140 CGTGCTTTTTGCCAGTGTGT 60.179 50.000 0.00 0.00 42.00 3.72
833 3603 0.871163 CCGTGCTTTTTGCCAGTGTG 60.871 55.000 0.00 0.00 42.00 3.82
876 3646 3.323136 GCGACTGTCTATGGCGCG 61.323 66.667 0.00 0.00 38.24 6.86
1461 4245 1.301716 CGCCATATTCCCCTCCACG 60.302 63.158 0.00 0.00 0.00 4.94
1569 4353 1.222936 CATCAGCGCCCTCTTCCTT 59.777 57.895 2.29 0.00 0.00 3.36
1644 4428 4.767255 CTGGACCTGGCCGCAGAC 62.767 72.222 0.00 0.00 0.00 3.51
1693 4477 4.806640 ATGCATCGAAATTTGTCCCTTT 57.193 36.364 0.00 0.00 0.00 3.11
1694 4478 4.806640 AATGCATCGAAATTTGTCCCTT 57.193 36.364 0.00 0.00 0.00 3.95
1751 4536 6.349426 CAAATGAAAGCGTCAAATTTCACTG 58.651 36.000 2.74 1.22 45.38 3.66
1780 4565 0.815213 GCGATGTAAGCCTGCATCCA 60.815 55.000 7.69 0.00 40.50 3.41
1786 4571 1.662629 CAGTTCTGCGATGTAAGCCTG 59.337 52.381 0.00 0.00 0.00 4.85
2441 5322 9.520515 AGTATGACATTGACAGGAATAAAAAGT 57.479 29.630 0.00 0.00 0.00 2.66
2493 5374 5.431765 CAGGAAGATACTTTGGCACACTAT 58.568 41.667 0.00 0.00 39.29 2.12
2830 5795 6.406370 GCTGGGCCATCTTTAAATAAAAAGT 58.594 36.000 6.72 0.00 37.65 2.66
2849 5814 1.265236 TACCAAAATTGCTGGCTGGG 58.735 50.000 6.73 0.00 37.48 4.45
2959 5924 6.487668 TGTTATCTGCCCATAGTCATCAATTG 59.512 38.462 0.00 0.00 0.00 2.32
3031 5996 1.173043 CCGTTATTGCAAGGCCTTGA 58.827 50.000 42.96 26.96 42.93 3.02
3083 6050 6.134535 AGGATAGTTCTCGATAGTGGAGAT 57.865 41.667 0.00 0.00 40.05 2.75
3139 6108 6.323739 TCCTATGGAAAAATCCTATGGTTTGC 59.676 38.462 0.00 0.00 0.00 3.68
3140 6109 7.896383 TCCTATGGAAAAATCCTATGGTTTG 57.104 36.000 0.00 0.00 0.00 2.93
3277 6298 3.592898 ATTCGCAGGATTTCCAAAACC 57.407 42.857 0.00 0.00 38.89 3.27
3368 6389 6.807720 TGAGCTGCATAAACACACAATAATTG 59.192 34.615 1.02 0.00 0.00 2.32
3371 6392 5.956068 TGAGCTGCATAAACACACAATAA 57.044 34.783 1.02 0.00 0.00 1.40
3376 6397 2.813754 TCCTTGAGCTGCATAAACACAC 59.186 45.455 1.02 0.00 0.00 3.82
3587 6609 1.557099 TTTCGAGCTAGAGCCCTTCA 58.443 50.000 0.00 0.00 43.38 3.02
3593 6616 4.095782 TCTCTTCTCTTTTCGAGCTAGAGC 59.904 45.833 12.90 0.00 42.18 4.09
3615 6638 5.354792 ACAGAACCTCGTCTACTACATCTTC 59.645 44.000 0.00 0.00 0.00 2.87
3668 6691 4.937201 AATAGCTGATCACACACCGATA 57.063 40.909 0.00 0.00 0.00 2.92
3766 6789 6.698766 ACAAACATCTCTTCAAATGTCTTTGC 59.301 34.615 0.00 0.00 41.29 3.68
3794 6817 2.851195 ACGAGGCTGAAAACTGAACAT 58.149 42.857 0.00 0.00 0.00 2.71
3839 6862 2.937519 TGTGTGGCTATGAACCAACAA 58.062 42.857 0.00 0.00 39.39 2.83
3934 6958 1.259840 GGGGCATGCCATCACAAGTT 61.260 55.000 36.56 0.00 37.98 2.66
4059 7086 5.266788 ACGATCTTATATTATGGGACGGGA 58.733 41.667 0.00 0.00 0.00 5.14
4111 7194 5.917087 TCCCTCTGTCCCCAAATATAAGATT 59.083 40.000 0.00 0.00 0.00 2.40
4128 7211 2.420022 CGGTTTGCAATTACTCCCTCTG 59.580 50.000 0.00 0.00 0.00 3.35
4140 7223 6.811253 ATTTTGAGTATCTACGGTTTGCAA 57.189 33.333 0.00 0.00 34.92 4.08
4170 7253 4.954092 ATTCCGCTTTCTGAATCACTTC 57.046 40.909 0.00 0.00 0.00 3.01
4232 7343 1.859302 TGCTCCCCTTTGTTTTGTGT 58.141 45.000 0.00 0.00 0.00 3.72
4249 7360 2.095059 AGCTCGTGATCCAAACATTTGC 60.095 45.455 0.00 0.00 36.86 3.68
4251 7362 4.074970 AGAAGCTCGTGATCCAAACATTT 58.925 39.130 0.00 0.00 0.00 2.32
4360 7471 2.107950 TATTTGTGAGGGAGCCAACG 57.892 50.000 0.00 0.00 0.00 4.10
4363 7474 4.671831 TCATTTTATTTGTGAGGGAGCCA 58.328 39.130 0.00 0.00 0.00 4.75
4637 7749 2.095853 GGTGCCGTATCATTTGTGTCTG 59.904 50.000 0.00 0.00 0.00 3.51
4653 7765 1.027357 CTTGTGCTATCCATGGTGCC 58.973 55.000 12.58 9.40 0.00 5.01
4712 7825 4.712425 CCTTGTTGCCGCTGCTGC 62.712 66.667 9.23 9.23 38.71 5.25
4714 7827 2.034687 ATCCTTGTTGCCGCTGCT 59.965 55.556 0.70 0.00 38.71 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.