Multiple sequence alignment - TraesCS1A01G272400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G272400 chr1A 100.000 5737 0 0 1 5737 465500678 465506414 0.000000e+00 10595.0
1 TraesCS1A01G272400 chr1A 86.420 81 10 1 5457 5536 581758186 581758266 2.850000e-13 87.9
2 TraesCS1A01G272400 chr1B 93.983 3058 104 25 2350 5376 491239972 491242980 0.000000e+00 4554.0
3 TraesCS1A01G272400 chr1B 89.928 1807 85 34 600 2346 491237862 491239631 0.000000e+00 2239.0
4 TraesCS1A01G272400 chr1B 89.198 611 41 13 1 607 491236651 491237240 0.000000e+00 739.0
5 TraesCS1A01G272400 chr1D 94.486 2974 109 24 2350 5297 366245885 366242941 0.000000e+00 4532.0
6 TraesCS1A01G272400 chr1D 91.683 1022 53 20 503 1503 366249759 366248749 0.000000e+00 1387.0
7 TraesCS1A01G272400 chr1D 92.767 871 40 10 1499 2346 366247109 366246239 0.000000e+00 1238.0
8 TraesCS1A01G272400 chr1D 91.885 419 31 3 1 416 366250252 366249834 2.980000e-162 582.0
9 TraesCS1A01G272400 chr3D 86.286 700 58 18 2835 3522 18426781 18427454 0.000000e+00 726.0
10 TraesCS1A01G272400 chr3D 83.788 697 93 14 4568 5258 534127571 534128253 1.350000e-180 643.0
11 TraesCS1A01G272400 chr3D 84.105 648 79 13 4568 5211 18428034 18428661 6.360000e-169 604.0
12 TraesCS1A01G272400 chr3D 85.268 224 21 6 3431 3652 534127146 534127359 2.690000e-53 220.0
13 TraesCS1A01G272400 chr3D 92.258 155 8 2 4418 4569 315480578 315480425 3.480000e-52 217.0
14 TraesCS1A01G272400 chr3D 88.136 177 21 0 2485 2661 486043740 486043564 1.620000e-50 211.0
15 TraesCS1A01G272400 chr3D 87.879 99 10 1 4303 4401 18427929 18428025 1.310000e-21 115.0
16 TraesCS1A01G272400 chr3D 86.869 99 11 1 4303 4401 18427668 18427764 6.080000e-20 110.0
17 TraesCS1A01G272400 chr3D 85.714 105 8 6 4314 4417 534127474 534127572 2.830000e-18 104.0
18 TraesCS1A01G272400 chr3A 86.227 697 60 16 2837 3522 26004114 26003443 0.000000e+00 723.0
19 TraesCS1A01G272400 chr3A 85.031 648 73 13 4568 5211 26002860 26002233 6.270000e-179 638.0
20 TraesCS1A01G272400 chr3A 85.965 513 65 6 3789 4297 671349290 671349799 5.060000e-150 542.0
21 TraesCS1A01G272400 chr3A 87.571 177 22 0 2485 2661 629219180 629219004 7.530000e-49 206.0
22 TraesCS1A01G272400 chr3A 87.500 96 10 1 4306 4401 26002962 26002869 6.080000e-20 110.0
23 TraesCS1A01G272400 chr3A 74.517 259 59 6 2048 2303 629224070 629223816 7.860000e-19 106.0
24 TraesCS1A01G272400 chr3A 86.458 96 11 1 4306 4401 26003227 26003134 2.830000e-18 104.0
25 TraesCS1A01G272400 chrUn 86.310 672 56 16 2862 3522 37333312 37333958 0.000000e+00 699.0
26 TraesCS1A01G272400 chrUn 82.099 648 69 18 4568 5211 37334273 37334877 1.430000e-140 510.0
27 TraesCS1A01G272400 chrUn 81.951 410 53 11 3909 4309 255438563 255438960 1.540000e-85 327.0
28 TraesCS1A01G272400 chrUn 91.304 161 13 1 4421 4581 50619843 50620002 9.680000e-53 219.0
29 TraesCS1A01G272400 chrUn 86.869 99 10 2 4303 4401 37334169 37334264 2.190000e-19 108.0
30 TraesCS1A01G272400 chr5D 86.957 621 56 12 3034 3651 61698670 61698072 0.000000e+00 675.0
31 TraesCS1A01G272400 chr5D 82.765 528 71 11 4568 5092 61697850 61697340 2.440000e-123 453.0
32 TraesCS1A01G272400 chr5D 86.104 403 40 8 3916 4308 179649750 179650146 2.470000e-113 420.0
33 TraesCS1A01G272400 chr5D 89.831 59 6 0 4226 4284 179651291 179651349 6.160000e-10 76.8
34 TraesCS1A01G272400 chr3B 86.634 621 59 12 3034 3651 720194084 720194683 0.000000e+00 665.0
35 TraesCS1A01G272400 chr3B 90.909 176 16 0 2485 2660 648741216 648741041 2.670000e-58 237.0
36 TraesCS1A01G272400 chr3B 91.411 163 13 1 4418 4580 396272030 396271869 7.480000e-54 222.0
37 TraesCS1A01G272400 chr6D 86.151 621 62 10 3034 3651 4982718 4982119 0.000000e+00 649.0
38 TraesCS1A01G272400 chr5B 86.151 621 62 12 3034 3651 703732177 703732776 0.000000e+00 649.0
39 TraesCS1A01G272400 chr5B 85.000 460 53 8 4568 5025 703732998 703733443 2.440000e-123 453.0
40 TraesCS1A01G272400 chr5B 82.543 527 72 11 4568 5092 560510355 560509847 4.080000e-121 446.0
41 TraesCS1A01G272400 chr5A 85.714 525 67 7 3789 4310 5427740 5427221 1.090000e-151 547.0
42 TraesCS1A01G272400 chr6A 82.732 527 72 10 4568 5092 504346843 504346334 8.770000e-123 451.0
43 TraesCS1A01G272400 chr7A 84.504 413 46 10 3909 4309 88933967 88933561 5.390000e-105 392.0
44 TraesCS1A01G272400 chr7A 79.951 409 49 14 3909 4309 479836464 479836847 2.630000e-68 270.0
45 TraesCS1A01G272400 chr2A 82.152 409 53 9 3909 4309 361210693 361210297 3.310000e-87 333.0
46 TraesCS1A01G272400 chr2A 93.421 152 10 0 4418 4569 141506319 141506470 5.780000e-55 226.0
47 TraesCS1A01G272400 chr2A 78.912 294 40 12 5458 5737 205486541 205486826 4.570000e-41 180.0
48 TraesCS1A01G272400 chr2A 87.368 95 10 1 5643 5737 542470657 542470749 2.190000e-19 108.0
49 TraesCS1A01G272400 chr4D 93.506 154 9 1 4418 4570 74079503 74079350 1.610000e-55 228.0
50 TraesCS1A01G272400 chr4B 93.464 153 10 0 4418 4570 438375332 438375180 1.610000e-55 228.0
51 TraesCS1A01G272400 chr2D 92.949 156 10 1 4418 4573 79056318 79056164 5.780000e-55 226.0
52 TraesCS1A01G272400 chr7B 79.528 127 21 5 5605 5728 592186180 592186056 1.020000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G272400 chr1A 465500678 465506414 5736 False 10595.000000 10595 100.000000 1 5737 1 chr1A.!!$F1 5736
1 TraesCS1A01G272400 chr1B 491236651 491242980 6329 False 2510.666667 4554 91.036333 1 5376 3 chr1B.!!$F1 5375
2 TraesCS1A01G272400 chr1D 366242941 366250252 7311 True 1934.750000 4532 92.705250 1 5297 4 chr1D.!!$R1 5296
3 TraesCS1A01G272400 chr3D 18426781 18428661 1880 False 388.750000 726 86.284750 2835 5211 4 chr3D.!!$F1 2376
4 TraesCS1A01G272400 chr3D 534127146 534128253 1107 False 322.333333 643 84.923333 3431 5258 3 chr3D.!!$F2 1827
5 TraesCS1A01G272400 chr3A 671349290 671349799 509 False 542.000000 542 85.965000 3789 4297 1 chr3A.!!$F1 508
6 TraesCS1A01G272400 chr3A 26002233 26004114 1881 True 393.750000 723 86.304000 2837 5211 4 chr3A.!!$R3 2374
7 TraesCS1A01G272400 chrUn 37333312 37334877 1565 False 439.000000 699 85.092667 2862 5211 3 chrUn.!!$F3 2349
8 TraesCS1A01G272400 chr5D 61697340 61698670 1330 True 564.000000 675 84.861000 3034 5092 2 chr5D.!!$R1 2058
9 TraesCS1A01G272400 chr5D 179649750 179651349 1599 False 248.400000 420 87.967500 3916 4308 2 chr5D.!!$F1 392
10 TraesCS1A01G272400 chr3B 720194084 720194683 599 False 665.000000 665 86.634000 3034 3651 1 chr3B.!!$F1 617
11 TraesCS1A01G272400 chr6D 4982119 4982718 599 True 649.000000 649 86.151000 3034 3651 1 chr6D.!!$R1 617
12 TraesCS1A01G272400 chr5B 703732177 703733443 1266 False 551.000000 649 85.575500 3034 5025 2 chr5B.!!$F1 1991
13 TraesCS1A01G272400 chr5B 560509847 560510355 508 True 446.000000 446 82.543000 4568 5092 1 chr5B.!!$R1 524
14 TraesCS1A01G272400 chr5A 5427221 5427740 519 True 547.000000 547 85.714000 3789 4310 1 chr5A.!!$R1 521
15 TraesCS1A01G272400 chr6A 504346334 504346843 509 True 451.000000 451 82.732000 4568 5092 1 chr6A.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 1370 0.536460 CTACGCCTCCTCTCCTCCTC 60.536 65.0 0.00 0.0 0.00 3.71 F
1377 2070 0.109781 TACGCCGTAAACAGTCCGAC 60.110 55.0 0.00 0.0 0.00 4.79 F
1928 4300 0.179018 AGACAACACTTGGACCCAGC 60.179 55.0 0.00 0.0 34.12 4.85 F
2954 5679 0.041400 TGAATGTTGCGACAACAGCG 60.041 50.0 23.03 0.0 39.66 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 3999 0.755686 ATAGCCTGCAGCCAGTACTC 59.244 55.000 8.66 0.0 45.47 2.59 R
2767 5490 0.320771 ACGCCATCCACTGACACTTC 60.321 55.000 0.00 0.0 0.00 3.01 R
3468 6215 1.813513 CCACACTAGGCTTGGTCTTG 58.186 55.000 0.00 0.0 0.00 3.02 R
4785 8253 1.077930 CACATGGCCTGGAGGACTG 60.078 63.158 3.32 0.0 45.91 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.496817 GGGCGGCTCACTAGTCAG 59.503 66.667 9.56 0.00 0.00 3.51
58 59 2.620886 GCTCACTAGTCAGTAGGGACCA 60.621 54.545 0.00 0.00 36.13 4.02
140 141 2.091665 CCAGGGCATTCCAGGTAAATCT 60.092 50.000 0.00 0.00 37.41 2.40
185 186 2.695666 ACACTTCCGAGATCATCCGAAT 59.304 45.455 0.00 0.00 0.00 3.34
187 188 4.122776 CACTTCCGAGATCATCCGAATTT 58.877 43.478 0.00 0.00 0.00 1.82
274 275 9.431887 AGTGAACGTGTGACTTTAATAATATGT 57.568 29.630 0.00 0.00 0.00 2.29
276 277 8.172484 TGAACGTGTGACTTTAATAATATGTGC 58.828 33.333 0.00 0.00 0.00 4.57
413 417 5.659440 ACAATCGCATACAATTCCCTTTT 57.341 34.783 0.00 0.00 0.00 2.27
461 467 8.426569 TTCCCTTTACTACGCCATATATTACT 57.573 34.615 0.00 0.00 0.00 2.24
492 498 2.554344 GCCCAAATGGACTGACTGGTAA 60.554 50.000 0.00 0.00 37.39 2.85
493 499 3.347216 CCCAAATGGACTGACTGGTAAG 58.653 50.000 0.00 0.00 37.39 2.34
498 523 2.846193 TGGACTGACTGGTAAGCAAAC 58.154 47.619 0.00 0.00 0.00 2.93
499 524 2.171659 TGGACTGACTGGTAAGCAAACA 59.828 45.455 0.00 0.00 0.00 2.83
501 526 2.808543 GACTGACTGGTAAGCAAACAGG 59.191 50.000 8.76 0.00 36.57 4.00
538 563 2.223618 GCCCAAACGCAAACAGTAGAAA 60.224 45.455 0.00 0.00 0.00 2.52
539 564 3.368495 CCCAAACGCAAACAGTAGAAAC 58.632 45.455 0.00 0.00 0.00 2.78
540 565 3.181495 CCCAAACGCAAACAGTAGAAACA 60.181 43.478 0.00 0.00 0.00 2.83
541 566 3.789224 CCAAACGCAAACAGTAGAAACAC 59.211 43.478 0.00 0.00 0.00 3.32
542 567 3.313274 AACGCAAACAGTAGAAACACG 57.687 42.857 0.00 0.00 0.00 4.49
547 572 0.601841 AACAGTAGAAACACGGGCCG 60.602 55.000 27.06 27.06 0.00 6.13
575 600 3.347958 TGGAAACATCGAACAAACAGC 57.652 42.857 0.00 0.00 33.40 4.40
708 1363 2.829458 GTCCGCTACGCCTCCTCT 60.829 66.667 0.00 0.00 0.00 3.69
709 1364 2.516460 TCCGCTACGCCTCCTCTC 60.516 66.667 0.00 0.00 0.00 3.20
710 1365 3.597728 CCGCTACGCCTCCTCTCC 61.598 72.222 0.00 0.00 0.00 3.71
711 1366 2.517402 CGCTACGCCTCCTCTCCT 60.517 66.667 0.00 0.00 0.00 3.69
712 1367 2.548295 CGCTACGCCTCCTCTCCTC 61.548 68.421 0.00 0.00 0.00 3.71
713 1368 2.197605 GCTACGCCTCCTCTCCTCC 61.198 68.421 0.00 0.00 0.00 4.30
714 1369 1.534697 CTACGCCTCCTCTCCTCCT 59.465 63.158 0.00 0.00 0.00 3.69
715 1370 0.536460 CTACGCCTCCTCTCCTCCTC 60.536 65.000 0.00 0.00 0.00 3.71
756 1412 2.508751 GCTATCTCCGGGACCCACC 61.509 68.421 12.15 0.00 38.08 4.61
791 1447 2.570181 CGTAGACCCCACGTCACC 59.430 66.667 0.00 0.00 44.66 4.02
1147 1821 3.512680 CGGATCGATCTGCCTTAATACC 58.487 50.000 23.96 3.47 0.00 2.73
1148 1822 3.512680 GGATCGATCTGCCTTAATACCG 58.487 50.000 23.96 0.00 0.00 4.02
1184 1859 2.187946 CGGTGGGGCTTAGAGCTG 59.812 66.667 0.00 0.00 41.99 4.24
1194 1869 0.250513 CTTAGAGCTGCCGAAACCCT 59.749 55.000 0.00 0.00 0.00 4.34
1198 1873 1.301677 GAGCTGCCGAAACCCTTCTG 61.302 60.000 0.00 0.00 0.00 3.02
1244 1928 0.179094 TCCCCGTTTGATCGAATCCG 60.179 55.000 0.00 0.00 37.07 4.18
1255 1939 1.153568 CGAATCCGAGGCTTCTGCA 60.154 57.895 4.49 0.00 38.42 4.41
1279 1970 2.358737 CTGGGGTTGTCACCGAGC 60.359 66.667 0.00 0.00 45.39 5.03
1292 1983 2.367567 TCACCGAGCTTGACTTTAAGGT 59.632 45.455 1.22 0.00 40.77 3.50
1314 2006 1.203162 TCCATGGTTGCATTGGAGGTT 60.203 47.619 12.58 0.00 0.00 3.50
1320 2012 0.597568 TTGCATTGGAGGTTCGCTTG 59.402 50.000 0.00 0.00 0.00 4.01
1321 2013 0.537143 TGCATTGGAGGTTCGCTTGT 60.537 50.000 0.00 0.00 0.00 3.16
1323 2015 1.000274 GCATTGGAGGTTCGCTTGTTT 60.000 47.619 0.00 0.00 0.00 2.83
1324 2016 2.922335 GCATTGGAGGTTCGCTTGTTTC 60.922 50.000 0.00 0.00 0.00 2.78
1360 2053 2.996621 GTGCTGTTGGTCAGATGTCTAC 59.003 50.000 0.00 0.00 46.27 2.59
1377 2070 0.109781 TACGCCGTAAACAGTCCGAC 60.110 55.000 0.00 0.00 0.00 4.79
1423 2116 3.150767 CGAGTCCTATTGGAGGTAGAGG 58.849 54.545 0.00 0.00 46.76 3.69
1427 2120 4.732957 AGTCCTATTGGAGGTAGAGGTACT 59.267 45.833 0.00 0.00 46.76 2.73
1491 2193 2.365617 ACCTACTATTCAGGATGCACGG 59.634 50.000 0.00 0.00 36.61 4.94
1492 2194 2.365617 CCTACTATTCAGGATGCACGGT 59.634 50.000 0.00 0.00 34.91 4.83
1527 3873 4.816392 ACCCGGCAAAAGTGAATTTAATC 58.184 39.130 0.00 0.00 0.00 1.75
1579 3927 6.440647 TGTCTGAATGACCTCCTATAACACTT 59.559 38.462 0.00 0.00 44.75 3.16
1591 3939 5.830991 TCCTATAACACTTTGCTTGGTTTGT 59.169 36.000 0.00 0.00 0.00 2.83
1642 4002 7.812690 TCTCATAAATAGCAAATGCATGAGT 57.187 32.000 21.87 2.17 42.39 3.41
1643 4003 8.907222 TCTCATAAATAGCAAATGCATGAGTA 57.093 30.769 21.87 12.44 42.39 2.59
1645 4005 8.681486 TCATAAATAGCAAATGCATGAGTACT 57.319 30.769 0.00 0.00 45.16 2.73
1646 4006 8.562052 TCATAAATAGCAAATGCATGAGTACTG 58.438 33.333 0.00 0.00 45.16 2.74
1647 4007 5.762825 AATAGCAAATGCATGAGTACTGG 57.237 39.130 0.00 0.00 45.16 4.00
1655 4019 1.094073 CATGAGTACTGGCTGCAGGC 61.094 60.000 31.92 31.92 41.50 4.85
1660 4024 1.689273 AGTACTGGCTGCAGGCTATAC 59.311 52.381 36.39 32.77 41.69 1.47
1720 4084 7.147976 AGGAATTTGACAACTGCAATTAGTTC 58.852 34.615 0.00 0.00 38.78 3.01
1776 4147 6.239289 CCAAACCCATGAACTGACACTAAAAT 60.239 38.462 0.00 0.00 0.00 1.82
1789 4160 5.769662 TGACACTAAAATTTGACAGCATCCT 59.230 36.000 0.00 0.00 0.00 3.24
1806 4178 3.238788 TCCTTCTGGGCGATCATACTA 57.761 47.619 0.00 0.00 34.39 1.82
1860 4232 5.227908 TCCATCTTGAAGTGTCGTTTAGTC 58.772 41.667 0.00 0.00 0.00 2.59
1928 4300 0.179018 AGACAACACTTGGACCCAGC 60.179 55.000 0.00 0.00 34.12 4.85
1988 4360 5.753721 ACCTGAATGAGCTCTACTTTCTT 57.246 39.130 16.19 0.00 0.00 2.52
2115 4487 2.357009 GACTGGATGGTATGCTTTGCAG 59.643 50.000 0.00 4.29 43.65 4.41
2297 4669 4.270325 GCTTGGAGTCGATGTATTTGGTAC 59.730 45.833 0.00 0.00 0.00 3.34
2346 4718 4.380867 CCACTTGCTGGTCATGGTAAAATC 60.381 45.833 0.00 0.00 34.90 2.17
2347 4719 4.218200 CACTTGCTGGTCATGGTAAAATCA 59.782 41.667 0.00 0.00 0.00 2.57
2673 5396 8.033178 TCACCAGGTAATTTATGATCATCTGA 57.967 34.615 12.53 0.00 0.00 3.27
2767 5490 6.551385 AGTGCATAACTGTTTCTTGAAGAG 57.449 37.500 0.00 0.00 37.88 2.85
2884 5608 8.957466 ACATTTATAGGCCACTAGTTTTTCTTC 58.043 33.333 5.01 0.00 31.54 2.87
2954 5679 0.041400 TGAATGTTGCGACAACAGCG 60.041 50.000 23.03 0.00 39.66 5.18
3048 5779 0.110486 GTTCCTTCTGCCCAACCAGA 59.890 55.000 0.00 0.00 39.94 3.86
3049 5780 0.850100 TTCCTTCTGCCCAACCAGAA 59.150 50.000 4.74 4.74 46.48 3.02
3251 5983 4.545610 TCAACCGAATTTGAATGCTTCAC 58.454 39.130 0.00 0.00 39.87 3.18
3468 6215 9.704098 GAGTGTAAAGATTCACCGAAAATAATC 57.296 33.333 0.00 0.00 35.45 1.75
3514 6262 4.101119 GGCTGGGCTTATCTTAGTAGTCAA 59.899 45.833 0.00 0.00 0.00 3.18
3610 6359 1.268625 GTGTAAACCCTGAAAAGGCCG 59.731 52.381 0.00 0.00 0.00 6.13
3687 6437 5.529060 CCAAATAATAGACTCACTTGGCTCC 59.471 44.000 0.00 0.00 0.00 4.70
3811 6569 3.625313 GGTCTTGAGCTCTAGAAAATGGC 59.375 47.826 26.14 14.18 30.13 4.40
3814 6572 2.621338 TGAGCTCTAGAAAATGGCGTG 58.379 47.619 16.19 0.00 0.00 5.34
3835 6593 9.651718 GGCGTGAAGAATTATTTATCAAGTTAG 57.348 33.333 7.95 0.00 0.00 2.34
3855 6613 7.676947 AGTTAGATTAAGGACAACTGCTACAA 58.323 34.615 0.00 0.00 0.00 2.41
3867 6625 2.039084 ACTGCTACAAAGAGTCAAGGGG 59.961 50.000 0.00 0.00 0.00 4.79
3869 6627 1.271379 GCTACAAAGAGTCAAGGGGCA 60.271 52.381 0.00 0.00 0.00 5.36
3891 6649 5.277011 GCATTTGTCCTTTCTTGTTTTCTGC 60.277 40.000 0.00 0.00 0.00 4.26
3914 6672 5.042463 TGTTTTGTCCAGGATCAACACTA 57.958 39.130 15.93 6.17 0.00 2.74
3922 6680 4.593206 TCCAGGATCAACACTAACAGAAGT 59.407 41.667 0.00 0.00 0.00 3.01
4166 6990 3.388024 TCCATTCGAGAAGGGATAGGTTG 59.612 47.826 14.34 0.00 45.18 3.77
4169 6993 2.108168 TCGAGAAGGGATAGGTTGGTG 58.892 52.381 0.00 0.00 0.00 4.17
4186 7010 4.295141 TGGTGTTATTTTGACGATCCCT 57.705 40.909 0.00 0.00 0.00 4.20
4270 7094 5.316327 AGCAGCTCCTTTAAATGCTAAAC 57.684 39.130 10.72 4.85 44.97 2.01
4434 7567 0.245539 TAACTCCCTCCGTTCGCAAG 59.754 55.000 0.00 0.00 0.00 4.01
4506 7639 6.030849 TCAGTGAACAAACACATTAAAACGG 58.969 36.000 0.00 0.00 42.45 4.44
4670 7987 0.035152 TGACCATGCCACAGGTGATC 60.035 55.000 0.00 0.00 38.50 2.92
4743 8209 3.876274 TGATGACTGTCTGAGGCTTAC 57.124 47.619 9.51 0.00 0.00 2.34
4785 8253 3.959449 AGGTATAGTCGAAGAACTTCCCC 59.041 47.826 8.66 0.79 39.69 4.81
4846 8476 2.166459 TCTGATCACTGGCCTAAGTTCG 59.834 50.000 3.32 0.00 0.00 3.95
4906 8753 3.501062 GCTACTAAAGGAACGCCAAAGTT 59.499 43.478 0.00 0.00 36.29 2.66
4912 8759 0.030235 GGAACGCCAAAGTTGTGGAC 59.970 55.000 7.90 0.78 41.65 4.02
5080 8943 5.964958 ACTGATAATGGTTTGTGGTTCTG 57.035 39.130 0.00 0.00 0.00 3.02
5126 8989 9.250624 GCTTAGTTACTCATGTTAGGTCATTAG 57.749 37.037 0.00 0.00 0.00 1.73
5129 8992 8.596781 AGTTACTCATGTTAGGTCATTAGAGT 57.403 34.615 0.00 0.00 36.13 3.24
5130 8993 9.696572 AGTTACTCATGTTAGGTCATTAGAGTA 57.303 33.333 0.00 0.00 34.86 2.59
5260 9130 2.267045 GGACAAATCCACCAGGCAC 58.733 57.895 0.00 0.00 45.47 5.01
5279 9151 0.390472 CCTGCCTGGAGTTTCTCGTC 60.390 60.000 0.00 0.00 38.35 4.20
5303 9175 1.806542 CTATCTGTGCGCTTGTTGGTT 59.193 47.619 9.73 0.00 0.00 3.67
5311 9183 1.334689 GCGCTTGTTGGTTAAGTGACC 60.335 52.381 0.00 0.00 37.75 4.02
5317 9189 3.804036 TGTTGGTTAAGTGACCTGTGAG 58.196 45.455 0.00 0.00 40.47 3.51
5347 9219 1.691434 ACCAAACATGGGCGACAATTT 59.309 42.857 0.00 0.00 0.00 1.82
5377 9249 6.470557 CAAACTTTTGCCCAGTGAATTATG 57.529 37.500 0.00 0.00 0.00 1.90
5378 9250 6.222389 CAAACTTTTGCCCAGTGAATTATGA 58.778 36.000 0.00 0.00 0.00 2.15
5379 9251 5.649782 ACTTTTGCCCAGTGAATTATGAG 57.350 39.130 0.00 0.00 0.00 2.90
5380 9252 4.463891 ACTTTTGCCCAGTGAATTATGAGG 59.536 41.667 0.00 0.00 0.00 3.86
5381 9253 2.057137 TGCCCAGTGAATTATGAGGC 57.943 50.000 0.00 0.00 39.41 4.70
5382 9254 0.947244 GCCCAGTGAATTATGAGGCG 59.053 55.000 0.00 0.00 0.00 5.52
5383 9255 1.747206 GCCCAGTGAATTATGAGGCGT 60.747 52.381 0.00 0.00 0.00 5.68
5384 9256 2.643551 CCCAGTGAATTATGAGGCGTT 58.356 47.619 0.00 0.00 0.00 4.84
5385 9257 3.804036 CCCAGTGAATTATGAGGCGTTA 58.196 45.455 0.00 0.00 0.00 3.18
5386 9258 4.389374 CCCAGTGAATTATGAGGCGTTAT 58.611 43.478 0.00 0.00 0.00 1.89
5387 9259 4.452455 CCCAGTGAATTATGAGGCGTTATC 59.548 45.833 0.00 0.00 0.00 1.75
5388 9260 5.056480 CCAGTGAATTATGAGGCGTTATCA 58.944 41.667 0.00 0.00 0.00 2.15
5389 9261 5.527214 CCAGTGAATTATGAGGCGTTATCAA 59.473 40.000 0.00 0.00 0.00 2.57
5390 9262 6.422223 CAGTGAATTATGAGGCGTTATCAAC 58.578 40.000 0.00 0.00 0.00 3.18
5391 9263 6.037062 CAGTGAATTATGAGGCGTTATCAACA 59.963 38.462 0.00 0.00 0.00 3.33
5392 9264 6.767902 AGTGAATTATGAGGCGTTATCAACAT 59.232 34.615 0.00 0.00 0.00 2.71
5393 9265 6.852853 GTGAATTATGAGGCGTTATCAACATG 59.147 38.462 0.00 0.00 0.00 3.21
5394 9266 6.542005 TGAATTATGAGGCGTTATCAACATGT 59.458 34.615 0.00 0.00 0.00 3.21
5395 9267 7.713073 TGAATTATGAGGCGTTATCAACATGTA 59.287 33.333 0.00 0.00 0.00 2.29
5396 9268 6.838198 TTATGAGGCGTTATCAACATGTAC 57.162 37.500 0.00 0.00 0.00 2.90
5397 9269 4.195225 TGAGGCGTTATCAACATGTACA 57.805 40.909 0.00 0.00 0.00 2.90
5398 9270 4.570930 TGAGGCGTTATCAACATGTACAA 58.429 39.130 0.00 0.00 0.00 2.41
5399 9271 5.182487 TGAGGCGTTATCAACATGTACAAT 58.818 37.500 0.00 0.00 0.00 2.71
5400 9272 6.342111 TGAGGCGTTATCAACATGTACAATA 58.658 36.000 0.00 0.00 0.00 1.90
5401 9273 6.256975 TGAGGCGTTATCAACATGTACAATAC 59.743 38.462 0.00 0.00 0.00 1.89
5402 9274 6.346096 AGGCGTTATCAACATGTACAATACT 58.654 36.000 0.00 0.00 0.00 2.12
5403 9275 7.494211 AGGCGTTATCAACATGTACAATACTA 58.506 34.615 0.00 0.00 0.00 1.82
5404 9276 7.982919 AGGCGTTATCAACATGTACAATACTAA 59.017 33.333 0.00 0.00 0.00 2.24
5405 9277 8.273557 GGCGTTATCAACATGTACAATACTAAG 58.726 37.037 0.00 0.00 0.00 2.18
5406 9278 8.814235 GCGTTATCAACATGTACAATACTAAGT 58.186 33.333 0.00 0.00 0.00 2.24
5470 9342 8.914011 ACTAATTTCATATGGGAAAAGCTTACC 58.086 33.333 0.00 6.73 39.94 2.85
5471 9343 5.828299 TTTCATATGGGAAAAGCTTACCG 57.172 39.130 0.00 0.00 38.59 4.02
5472 9344 4.497291 TCATATGGGAAAAGCTTACCGT 57.503 40.909 0.00 7.04 38.59 4.83
5473 9345 4.448210 TCATATGGGAAAAGCTTACCGTC 58.552 43.478 11.46 2.66 38.59 4.79
5474 9346 2.871096 ATGGGAAAAGCTTACCGTCA 57.129 45.000 0.00 1.99 38.59 4.35
5475 9347 1.886886 TGGGAAAAGCTTACCGTCAC 58.113 50.000 0.00 0.00 38.59 3.67
5476 9348 1.162698 GGGAAAAGCTTACCGTCACC 58.837 55.000 0.00 0.00 0.00 4.02
5477 9349 1.162698 GGAAAAGCTTACCGTCACCC 58.837 55.000 0.00 0.00 0.00 4.61
5478 9350 0.794473 GAAAAGCTTACCGTCACCCG 59.206 55.000 0.00 0.00 0.00 5.28
5488 9360 4.451150 GTCACCCGGCTGATCGCA 62.451 66.667 2.05 0.00 41.67 5.10
5489 9361 4.147449 TCACCCGGCTGATCGCAG 62.147 66.667 0.00 7.15 45.13 5.18
5497 9369 2.510012 CTGATCGCAGCGGCAGAA 60.510 61.111 25.16 4.30 41.24 3.02
5498 9370 1.886313 CTGATCGCAGCGGCAGAAT 60.886 57.895 25.16 8.91 41.24 2.40
5499 9371 1.829349 CTGATCGCAGCGGCAGAATC 61.829 60.000 25.16 16.61 41.24 2.52
5500 9372 1.593750 GATCGCAGCGGCAGAATCT 60.594 57.895 16.42 0.00 41.24 2.40
5501 9373 1.829349 GATCGCAGCGGCAGAATCTG 61.829 60.000 16.42 5.78 41.24 2.90
5510 9382 4.972875 CAGAATCTGCCACCTCCC 57.027 61.111 0.00 0.00 0.00 4.30
5511 9383 1.225704 CAGAATCTGCCACCTCCCC 59.774 63.158 0.00 0.00 0.00 4.81
5512 9384 1.083706 AGAATCTGCCACCTCCCCT 59.916 57.895 0.00 0.00 0.00 4.79
5513 9385 1.225704 GAATCTGCCACCTCCCCTG 59.774 63.158 0.00 0.00 0.00 4.45
5514 9386 2.900671 GAATCTGCCACCTCCCCTGC 62.901 65.000 0.00 0.00 0.00 4.85
5515 9387 4.980592 TCTGCCACCTCCCCTGCA 62.981 66.667 0.00 0.00 0.00 4.41
5516 9388 3.736224 CTGCCACCTCCCCTGCAT 61.736 66.667 0.00 0.00 32.53 3.96
5517 9389 4.051167 TGCCACCTCCCCTGCATG 62.051 66.667 0.00 0.00 0.00 4.06
5518 9390 3.731728 GCCACCTCCCCTGCATGA 61.732 66.667 0.00 0.00 0.00 3.07
5519 9391 2.273449 CCACCTCCCCTGCATGAC 59.727 66.667 0.00 0.00 0.00 3.06
5520 9392 2.605607 CCACCTCCCCTGCATGACA 61.606 63.158 0.00 0.00 0.00 3.58
5521 9393 1.377725 CACCTCCCCTGCATGACAC 60.378 63.158 0.00 0.00 0.00 3.67
5522 9394 1.847506 ACCTCCCCTGCATGACACA 60.848 57.895 0.00 0.00 0.00 3.72
5523 9395 1.377725 CCTCCCCTGCATGACACAC 60.378 63.158 0.00 0.00 0.00 3.82
5524 9396 1.742880 CTCCCCTGCATGACACACG 60.743 63.158 0.00 0.00 0.00 4.49
5525 9397 2.032528 CCCCTGCATGACACACGT 59.967 61.111 0.00 0.00 0.00 4.49
5526 9398 2.034879 CCCCTGCATGACACACGTC 61.035 63.158 0.00 0.00 42.93 4.34
5527 9399 2.034879 CCCTGCATGACACACGTCC 61.035 63.158 0.00 0.00 41.85 4.79
5528 9400 1.301637 CCTGCATGACACACGTCCA 60.302 57.895 0.00 0.00 41.85 4.02
5529 9401 1.293963 CCTGCATGACACACGTCCAG 61.294 60.000 0.00 0.00 41.85 3.86
5530 9402 0.601046 CTGCATGACACACGTCCAGT 60.601 55.000 0.00 0.00 41.85 4.00
5539 9411 3.048602 ACGTCCAGTGAGGGTTCG 58.951 61.111 0.00 0.00 38.24 3.95
5540 9412 1.529948 ACGTCCAGTGAGGGTTCGA 60.530 57.895 0.00 0.00 38.24 3.71
5541 9413 1.111116 ACGTCCAGTGAGGGTTCGAA 61.111 55.000 0.00 0.00 38.24 3.71
5542 9414 0.246635 CGTCCAGTGAGGGTTCGAAT 59.753 55.000 0.00 0.00 38.24 3.34
5543 9415 1.475280 CGTCCAGTGAGGGTTCGAATA 59.525 52.381 0.00 0.00 38.24 1.75
5544 9416 2.734492 CGTCCAGTGAGGGTTCGAATAC 60.734 54.545 0.00 0.00 38.24 1.89
5545 9417 1.829222 TCCAGTGAGGGTTCGAATACC 59.171 52.381 12.46 12.46 38.24 2.73
5546 9418 1.470979 CCAGTGAGGGTTCGAATACCG 60.471 57.143 13.95 2.71 39.18 4.02
5547 9419 0.175073 AGTGAGGGTTCGAATACCGC 59.825 55.000 15.34 15.34 39.18 5.68
5548 9420 0.808847 GTGAGGGTTCGAATACCGCC 60.809 60.000 18.08 13.27 39.18 6.13
5549 9421 1.259142 TGAGGGTTCGAATACCGCCA 61.259 55.000 18.08 15.03 39.18 5.69
5550 9422 0.108041 GAGGGTTCGAATACCGCCAA 60.108 55.000 13.95 0.00 39.18 4.52
5551 9423 0.325602 AGGGTTCGAATACCGCCAAA 59.674 50.000 13.95 0.00 39.18 3.28
5552 9424 0.448990 GGGTTCGAATACCGCCAAAC 59.551 55.000 0.00 0.00 39.18 2.93
5553 9425 1.158434 GGTTCGAATACCGCCAAACA 58.842 50.000 0.00 0.00 38.37 2.83
5554 9426 1.741145 GGTTCGAATACCGCCAAACAT 59.259 47.619 0.00 0.00 38.37 2.71
5555 9427 2.477189 GGTTCGAATACCGCCAAACATG 60.477 50.000 0.00 0.00 38.37 3.21
5556 9428 0.730265 TCGAATACCGCCAAACATGC 59.270 50.000 0.00 0.00 38.37 4.06
5557 9429 0.732571 CGAATACCGCCAAACATGCT 59.267 50.000 0.00 0.00 0.00 3.79
5558 9430 1.132262 CGAATACCGCCAAACATGCTT 59.868 47.619 0.00 0.00 0.00 3.91
5559 9431 2.791158 CGAATACCGCCAAACATGCTTC 60.791 50.000 0.00 0.00 0.00 3.86
5560 9432 2.128771 ATACCGCCAAACATGCTTCT 57.871 45.000 0.00 0.00 0.00 2.85
5561 9433 1.164411 TACCGCCAAACATGCTTCTG 58.836 50.000 0.00 0.00 0.00 3.02
5562 9434 1.444895 CCGCCAAACATGCTTCTGC 60.445 57.895 0.00 0.00 40.20 4.26
5572 9444 3.660621 GCTTCTGCAACGAAGGCT 58.339 55.556 15.29 0.00 40.52 4.58
5573 9445 2.840974 GCTTCTGCAACGAAGGCTA 58.159 52.632 15.29 0.00 40.52 3.93
5574 9446 1.373570 GCTTCTGCAACGAAGGCTAT 58.626 50.000 15.29 0.00 40.52 2.97
5575 9447 1.063174 GCTTCTGCAACGAAGGCTATG 59.937 52.381 15.29 0.00 40.52 2.23
5576 9448 1.063174 CTTCTGCAACGAAGGCTATGC 59.937 52.381 7.63 7.34 37.37 3.14
5577 9449 1.083806 TCTGCAACGAAGGCTATGCG 61.084 55.000 9.09 6.45 41.61 4.73
5578 9450 2.040213 CTGCAACGAAGGCTATGCGG 62.040 60.000 8.35 8.35 41.61 5.69
5579 9451 2.106683 GCAACGAAGGCTATGCGGT 61.107 57.895 8.77 0.00 0.00 5.68
5580 9452 1.715585 CAACGAAGGCTATGCGGTG 59.284 57.895 7.76 7.76 36.34 4.94
5581 9453 1.019278 CAACGAAGGCTATGCGGTGT 61.019 55.000 12.42 0.00 37.90 4.16
5582 9454 0.321298 AACGAAGGCTATGCGGTGTT 60.321 50.000 8.77 0.00 0.00 3.32
5583 9455 1.019278 ACGAAGGCTATGCGGTGTTG 61.019 55.000 8.77 0.00 0.00 3.33
5584 9456 1.429423 GAAGGCTATGCGGTGTTGC 59.571 57.895 0.00 0.00 0.00 4.17
5591 9463 3.038280 TGCGGTGTTGCAATGGTC 58.962 55.556 0.59 0.00 43.02 4.02
5592 9464 1.528076 TGCGGTGTTGCAATGGTCT 60.528 52.632 0.59 0.00 43.02 3.85
5593 9465 0.250510 TGCGGTGTTGCAATGGTCTA 60.251 50.000 0.59 0.00 43.02 2.59
5594 9466 0.447801 GCGGTGTTGCAATGGTCTAG 59.552 55.000 0.59 0.00 34.15 2.43
5595 9467 1.808411 CGGTGTTGCAATGGTCTAGT 58.192 50.000 0.59 0.00 0.00 2.57
5596 9468 2.933492 GCGGTGTTGCAATGGTCTAGTA 60.933 50.000 0.59 0.00 34.15 1.82
5597 9469 3.531538 CGGTGTTGCAATGGTCTAGTAT 58.468 45.455 0.59 0.00 0.00 2.12
5598 9470 3.309682 CGGTGTTGCAATGGTCTAGTATG 59.690 47.826 0.59 0.00 0.00 2.39
5599 9471 4.513442 GGTGTTGCAATGGTCTAGTATGA 58.487 43.478 0.59 0.00 0.00 2.15
5600 9472 4.941263 GGTGTTGCAATGGTCTAGTATGAA 59.059 41.667 0.59 0.00 0.00 2.57
5601 9473 5.590259 GGTGTTGCAATGGTCTAGTATGAAT 59.410 40.000 0.59 0.00 0.00 2.57
5602 9474 6.238484 GGTGTTGCAATGGTCTAGTATGAATC 60.238 42.308 0.59 0.00 0.00 2.52
5603 9475 5.523552 TGTTGCAATGGTCTAGTATGAATCG 59.476 40.000 0.59 0.00 0.00 3.34
5604 9476 5.276461 TGCAATGGTCTAGTATGAATCGT 57.724 39.130 0.00 0.00 0.00 3.73
5605 9477 5.049828 TGCAATGGTCTAGTATGAATCGTG 58.950 41.667 0.00 0.00 0.00 4.35
5606 9478 5.050490 GCAATGGTCTAGTATGAATCGTGT 58.950 41.667 0.00 0.00 0.00 4.49
5607 9479 5.523916 GCAATGGTCTAGTATGAATCGTGTT 59.476 40.000 0.00 0.00 0.00 3.32
5608 9480 6.037172 GCAATGGTCTAGTATGAATCGTGTTT 59.963 38.462 0.00 0.00 0.00 2.83
5609 9481 7.414098 GCAATGGTCTAGTATGAATCGTGTTTT 60.414 37.037 0.00 0.00 0.00 2.43
5610 9482 9.093970 CAATGGTCTAGTATGAATCGTGTTTTA 57.906 33.333 0.00 0.00 0.00 1.52
5611 9483 8.644318 ATGGTCTAGTATGAATCGTGTTTTAC 57.356 34.615 0.00 0.00 0.00 2.01
5612 9484 7.604549 TGGTCTAGTATGAATCGTGTTTTACA 58.395 34.615 0.00 0.00 0.00 2.41
5613 9485 8.089597 TGGTCTAGTATGAATCGTGTTTTACAA 58.910 33.333 0.00 0.00 0.00 2.41
5614 9486 8.378421 GGTCTAGTATGAATCGTGTTTTACAAC 58.622 37.037 0.00 0.00 0.00 3.32
5615 9487 8.918658 GTCTAGTATGAATCGTGTTTTACAACA 58.081 33.333 0.00 0.00 40.82 3.33
5616 9488 9.478768 TCTAGTATGAATCGTGTTTTACAACAA 57.521 29.630 0.00 0.00 44.72 2.83
5619 9491 9.228636 AGTATGAATCGTGTTTTACAACAAAAC 57.771 29.630 0.00 5.81 44.72 2.43
5620 9492 9.011407 GTATGAATCGTGTTTTACAACAAAACA 57.989 29.630 10.39 10.39 44.72 2.83
5628 9500 6.613233 TGTTTTACAACAAAACATCTGTCGT 58.387 32.000 10.39 0.00 42.96 4.34
5629 9501 6.524933 TGTTTTACAACAAAACATCTGTCGTG 59.475 34.615 10.39 0.00 42.96 4.35
5630 9502 3.691049 ACAACAAAACATCTGTCGTGG 57.309 42.857 0.00 0.00 0.00 4.94
5631 9503 3.275143 ACAACAAAACATCTGTCGTGGA 58.725 40.909 0.00 0.00 0.00 4.02
5632 9504 3.692101 ACAACAAAACATCTGTCGTGGAA 59.308 39.130 0.00 0.00 0.00 3.53
5633 9505 4.338118 ACAACAAAACATCTGTCGTGGAAT 59.662 37.500 0.00 0.00 0.00 3.01
5634 9506 5.163561 ACAACAAAACATCTGTCGTGGAATT 60.164 36.000 0.00 0.00 0.00 2.17
5635 9507 5.514274 ACAAAACATCTGTCGTGGAATTT 57.486 34.783 0.00 0.00 0.00 1.82
5636 9508 5.901552 ACAAAACATCTGTCGTGGAATTTT 58.098 33.333 0.00 0.00 0.00 1.82
5637 9509 6.337356 ACAAAACATCTGTCGTGGAATTTTT 58.663 32.000 0.00 0.00 0.00 1.94
5655 9527 2.435372 TTTTGCAACCAGACCTCAGT 57.565 45.000 0.00 0.00 0.00 3.41
5656 9528 2.435372 TTTGCAACCAGACCTCAGTT 57.565 45.000 0.00 0.00 0.00 3.16
5657 9529 1.679139 TTGCAACCAGACCTCAGTTG 58.321 50.000 0.00 0.00 42.95 3.16
5659 9531 3.402186 CAACCAGACCTCAGTTGCA 57.598 52.632 0.00 0.00 34.98 4.08
5660 9532 1.679139 CAACCAGACCTCAGTTGCAA 58.321 50.000 0.00 0.00 34.98 4.08
5661 9533 2.023673 CAACCAGACCTCAGTTGCAAA 58.976 47.619 0.00 0.00 34.98 3.68
5662 9534 2.426738 CAACCAGACCTCAGTTGCAAAA 59.573 45.455 0.00 0.00 34.98 2.44
5663 9535 2.733956 ACCAGACCTCAGTTGCAAAAA 58.266 42.857 0.00 0.00 0.00 1.94
5664 9536 3.299503 ACCAGACCTCAGTTGCAAAAAT 58.700 40.909 0.00 0.00 0.00 1.82
5665 9537 4.469657 ACCAGACCTCAGTTGCAAAAATA 58.530 39.130 0.00 0.00 0.00 1.40
5666 9538 4.892934 ACCAGACCTCAGTTGCAAAAATAA 59.107 37.500 0.00 0.00 0.00 1.40
5667 9539 5.539955 ACCAGACCTCAGTTGCAAAAATAAT 59.460 36.000 0.00 0.00 0.00 1.28
5668 9540 6.041979 ACCAGACCTCAGTTGCAAAAATAATT 59.958 34.615 0.00 0.00 0.00 1.40
5669 9541 6.930722 CCAGACCTCAGTTGCAAAAATAATTT 59.069 34.615 0.00 0.00 0.00 1.82
5670 9542 7.442062 CCAGACCTCAGTTGCAAAAATAATTTT 59.558 33.333 0.00 0.00 39.30 1.82
5684 9556 9.934190 CAAAAATAATTTTGCAACTAAACAGCT 57.066 25.926 0.00 0.00 46.26 4.24
5685 9557 9.934190 AAAAATAATTTTGCAACTAAACAGCTG 57.066 25.926 13.48 13.48 37.36 4.24
5686 9558 8.661352 AAATAATTTTGCAACTAAACAGCTGT 57.339 26.923 15.25 15.25 0.00 4.40
5687 9559 8.661352 AATAATTTTGCAACTAAACAGCTGTT 57.339 26.923 26.36 26.36 40.50 3.16
5688 9560 5.971895 ATTTTGCAACTAAACAGCTGTTG 57.028 34.783 31.73 22.03 42.55 3.33
5694 9566 5.776519 CAACTAAACAGCTGTTGCAAAAA 57.223 34.783 31.73 12.58 42.74 1.94
5715 9587 6.939551 AAAATTTCTGCAACAAGATCGATG 57.060 33.333 0.54 0.00 0.00 3.84
5716 9588 5.633830 AATTTCTGCAACAAGATCGATGT 57.366 34.783 0.54 0.00 0.00 3.06
5717 9589 5.633830 ATTTCTGCAACAAGATCGATGTT 57.366 34.783 0.54 0.92 41.50 2.71
5718 9590 5.437289 TTTCTGCAACAAGATCGATGTTT 57.563 34.783 14.77 0.00 38.90 2.83
5719 9591 4.668576 TCTGCAACAAGATCGATGTTTC 57.331 40.909 14.77 11.80 38.90 2.78
5720 9592 4.064388 TCTGCAACAAGATCGATGTTTCA 58.936 39.130 14.77 14.89 38.90 2.69
5721 9593 4.152938 TCTGCAACAAGATCGATGTTTCAG 59.847 41.667 25.85 25.85 46.50 3.02
5722 9594 4.064388 TGCAACAAGATCGATGTTTCAGA 58.936 39.130 14.77 0.00 38.90 3.27
5723 9595 4.514816 TGCAACAAGATCGATGTTTCAGAA 59.485 37.500 14.77 0.30 38.90 3.02
5724 9596 5.008514 TGCAACAAGATCGATGTTTCAGAAA 59.991 36.000 14.77 0.00 38.90 2.52
5725 9597 6.088824 GCAACAAGATCGATGTTTCAGAAAT 58.911 36.000 14.77 0.00 38.90 2.17
5726 9598 7.094848 TGCAACAAGATCGATGTTTCAGAAATA 60.095 33.333 14.77 0.00 38.90 1.40
5727 9599 7.750458 GCAACAAGATCGATGTTTCAGAAATAA 59.250 33.333 14.77 0.00 38.90 1.40
5728 9600 9.778993 CAACAAGATCGATGTTTCAGAAATAAT 57.221 29.630 14.77 0.00 38.90 1.28
5730 9602 9.994432 ACAAGATCGATGTTTCAGAAATAATTC 57.006 29.630 0.54 0.00 35.70 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.074775 TAGTGAGCCGCCCCCTATT 60.075 57.895 0.00 0.00 0.00 1.73
49 50 9.793259 TTCAAGAATATTATGAATGGTCCCTAC 57.207 33.333 10.57 0.00 0.00 3.18
191 192 3.366396 AGAATGAGAGAACGGGCTCTAA 58.634 45.455 8.98 3.19 44.92 2.10
192 193 2.952978 GAGAATGAGAGAACGGGCTCTA 59.047 50.000 8.98 0.61 44.92 2.43
274 275 2.779755 AGGTGTTCCGAACATATGCA 57.220 45.000 16.80 0.00 44.35 3.96
276 277 3.930229 TCGAAAGGTGTTCCGAACATATG 59.070 43.478 16.80 0.00 44.35 1.78
413 417 6.916360 ATTGTATGCCTCAAAAGGAAAAGA 57.084 33.333 0.00 0.00 46.67 2.52
461 467 1.713647 TCCATTTGGGCCTCTGGTTTA 59.286 47.619 4.53 0.00 36.21 2.01
467 473 0.329596 GTCAGTCCATTTGGGCCTCT 59.670 55.000 4.53 0.00 41.83 3.69
514 539 2.829003 TGTTTGCGTTTGGGCCGA 60.829 55.556 0.00 0.00 0.00 5.54
542 567 3.540367 TTTCCAAGTCGACCGGCCC 62.540 63.158 13.01 0.00 0.00 5.80
547 572 2.074547 TCGATGTTTCCAAGTCGACC 57.925 50.000 13.01 0.00 38.09 4.79
555 580 2.286713 CGCTGTTTGTTCGATGTTTCCA 60.287 45.455 0.00 0.00 0.00 3.53
556 581 2.307049 CGCTGTTTGTTCGATGTTTCC 58.693 47.619 0.00 0.00 0.00 3.13
575 600 2.116533 GGTTTTATCCGTGGGCCCG 61.117 63.158 19.37 5.74 0.00 6.13
708 1363 1.862138 TGTGGGAGGAGGAGGAGGA 60.862 63.158 0.00 0.00 0.00 3.71
709 1364 1.382420 CTGTGGGAGGAGGAGGAGG 60.382 68.421 0.00 0.00 0.00 4.30
710 1365 2.063378 GCTGTGGGAGGAGGAGGAG 61.063 68.421 0.00 0.00 0.00 3.69
711 1366 2.039624 GCTGTGGGAGGAGGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
712 1367 2.040278 AGCTGTGGGAGGAGGAGG 59.960 66.667 0.00 0.00 0.00 4.30
713 1368 2.365586 CCAGCTGTGGGAGGAGGAG 61.366 68.421 13.81 0.00 40.67 3.69
714 1369 2.284921 CCAGCTGTGGGAGGAGGA 60.285 66.667 13.81 0.00 40.67 3.71
736 1391 3.992317 GGGTCCCGGAGATAGCGC 61.992 72.222 0.73 0.00 0.00 5.92
756 1412 1.887198 ACGGTCTACCTGTCACTGAAG 59.113 52.381 0.00 0.00 0.00 3.02
958 1615 3.036959 GGGAGGGGAGGAGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
1122 1794 4.654412 GGCAGATCGATCCGCGCT 62.654 66.667 23.57 3.04 40.61 5.92
1123 1795 2.749110 TAAGGCAGATCGATCCGCGC 62.749 60.000 23.57 21.04 40.61 6.86
1124 1796 0.318699 TTAAGGCAGATCGATCCGCG 60.319 55.000 23.57 13.61 42.69 6.46
1125 1797 2.086054 ATTAAGGCAGATCGATCCGC 57.914 50.000 22.73 22.73 0.00 5.54
1142 1816 1.052694 GGGGGACTACAGGCGGTATT 61.053 60.000 0.00 0.00 0.00 1.89
1143 1817 1.458967 GGGGGACTACAGGCGGTAT 60.459 63.158 0.00 0.00 0.00 2.73
1144 1818 2.042639 GGGGGACTACAGGCGGTA 60.043 66.667 0.00 0.00 0.00 4.02
1182 1857 3.987404 CCAGAAGGGTTTCGGCAG 58.013 61.111 0.00 0.00 38.38 4.85
1194 1869 0.036732 ATCCGAGCAAGCAACCAGAA 59.963 50.000 0.00 0.00 0.00 3.02
1198 1873 1.372087 CCAGATCCGAGCAAGCAACC 61.372 60.000 0.00 0.00 0.00 3.77
1227 1902 1.209128 CTCGGATTCGATCAAACGGG 58.791 55.000 0.00 0.00 45.04 5.28
1255 1939 0.251341 GTGACAACCCCAGAAGGCAT 60.251 55.000 0.00 0.00 0.00 4.40
1279 1970 6.215845 CAACCATGGAAACCTTAAAGTCAAG 58.784 40.000 21.47 0.00 0.00 3.02
1292 1983 1.901159 CCTCCAATGCAACCATGGAAA 59.099 47.619 21.47 0.32 32.23 3.13
1360 2053 0.940519 TTGTCGGACTGTTTACGGCG 60.941 55.000 4.80 4.80 34.51 6.46
1377 2070 4.023450 ACTGACACTGATGCAGTCAATTTG 60.023 41.667 7.10 0.00 43.43 2.32
1423 2116 1.725164 GCTCCGCAGTAACACAAGTAC 59.275 52.381 0.00 0.00 0.00 2.73
1427 2120 0.320421 GGAGCTCCGCAGTAACACAA 60.320 55.000 19.06 0.00 0.00 3.33
1464 2166 6.821665 GTGCATCCTGAATAGTAGGTTTGTTA 59.178 38.462 0.00 0.00 36.67 2.41
1465 2167 5.648092 GTGCATCCTGAATAGTAGGTTTGTT 59.352 40.000 0.00 0.00 36.67 2.83
1540 3886 2.340337 TCAGACACATGCAAGATGACG 58.660 47.619 0.00 0.00 0.00 4.35
1579 3927 3.030291 ACCTCATGAACAAACCAAGCAA 58.970 40.909 0.00 0.00 0.00 3.91
1591 3939 4.811555 GCAAATGCGTATACCTCATGAA 57.188 40.909 0.00 0.00 0.00 2.57
1639 3999 0.755686 ATAGCCTGCAGCCAGTACTC 59.244 55.000 8.66 0.00 45.47 2.59
1640 4000 1.689273 GTATAGCCTGCAGCCAGTACT 59.311 52.381 8.66 0.00 45.47 2.73
1642 4002 2.088104 AGTATAGCCTGCAGCCAGTA 57.912 50.000 8.66 0.00 45.47 2.74
1643 4003 1.139853 GAAGTATAGCCTGCAGCCAGT 59.860 52.381 8.66 0.00 45.47 4.00
1645 4005 1.139654 CAGAAGTATAGCCTGCAGCCA 59.860 52.381 8.66 0.00 45.47 4.75
1646 4006 1.139853 ACAGAAGTATAGCCTGCAGCC 59.860 52.381 8.66 0.00 45.47 4.85
1647 4007 2.611225 ACAGAAGTATAGCCTGCAGC 57.389 50.000 8.66 3.91 44.25 5.25
1655 4019 8.893219 TTGCATATTCTCCAACAGAAGTATAG 57.107 34.615 0.00 0.00 44.71 1.31
1660 4024 5.747197 GCATTTGCATATTCTCCAACAGAAG 59.253 40.000 0.00 0.00 41.82 2.85
1720 4084 2.035576 GACCTAATACTACGGGGCAGTG 59.964 54.545 0.00 0.00 0.00 3.66
1776 4147 1.887956 GCCCAGAAGGATGCTGTCAAA 60.888 52.381 0.00 0.00 41.55 2.69
1789 4160 6.474140 TTTAAGTAGTATGATCGCCCAGAA 57.526 37.500 0.00 0.00 0.00 3.02
1827 4199 8.331022 CGACACTTCAAGATGGAAAATATGTAG 58.669 37.037 0.00 0.00 0.00 2.74
1860 4232 1.737793 GTGCCTAAGAACCGATGGTTG 59.262 52.381 5.85 0.00 46.95 3.77
1928 4300 7.063456 CAGAACAAGAACGTACAGTAACAATG 58.937 38.462 0.00 0.00 0.00 2.82
2115 4487 6.372659 TCTTGCAACTTCTATGAATCAGTTCC 59.627 38.462 0.00 0.00 33.26 3.62
2173 4545 6.640907 GGGAAAATAACTACACTGCAAACAAG 59.359 38.462 0.00 0.00 0.00 3.16
2253 4625 3.373439 GCTTTGCATAGAGTGGACTGAAG 59.627 47.826 8.49 0.00 0.00 3.02
2346 4718 8.467598 ACTCAATGATTTCAAAGGATCTCAATG 58.532 33.333 0.00 0.00 0.00 2.82
2347 4719 8.591114 ACTCAATGATTTCAAAGGATCTCAAT 57.409 30.769 0.00 0.00 0.00 2.57
2673 5396 5.046014 AGTTGTCAGATATTCTGGAGCACTT 60.046 40.000 4.78 0.00 44.39 3.16
2767 5490 0.320771 ACGCCATCCACTGACACTTC 60.321 55.000 0.00 0.00 0.00 3.01
2853 5577 8.417273 AAACTAGTGGCCTATAAATGTGTTTT 57.583 30.769 3.32 0.00 0.00 2.43
2876 5600 9.897744 CATAAGCTCATGTAACTTGAAGAAAAA 57.102 29.630 0.00 0.00 0.00 1.94
2954 5679 3.243367 TGGTGCATAGAAACAGCAAACAC 60.243 43.478 0.00 0.00 41.00 3.32
3311 6058 5.603596 AGTACGGTGTGAATCTTTGTGTAA 58.396 37.500 0.00 0.00 0.00 2.41
3468 6215 1.813513 CCACACTAGGCTTGGTCTTG 58.186 55.000 0.00 0.00 0.00 3.02
3514 6262 9.771140 AGAGATTATAGGTTAATCCGGATAAGT 57.229 33.333 19.48 4.63 41.99 2.24
3610 6359 2.106477 AACTTGAAGCAGCTCTAGCC 57.894 50.000 0.00 0.00 43.38 3.93
3687 6437 5.551760 ACCAGCAAATAATCTTTGAGACG 57.448 39.130 2.05 0.00 0.00 4.18
3835 6593 6.651225 ACTCTTTGTAGCAGTTGTCCTTAATC 59.349 38.462 0.00 0.00 0.00 1.75
3855 6613 2.519013 GACAAATGCCCCTTGACTCTT 58.481 47.619 0.00 0.00 0.00 2.85
3867 6625 5.277011 GCAGAAAACAAGAAAGGACAAATGC 60.277 40.000 0.00 0.00 0.00 3.56
3869 6627 6.044682 CAGCAGAAAACAAGAAAGGACAAAT 58.955 36.000 0.00 0.00 0.00 2.32
3891 6649 3.885297 AGTGTTGATCCTGGACAAAACAG 59.115 43.478 22.79 0.00 36.89 3.16
3914 6672 7.766278 GGTATCACATAGTTCATCACTTCTGTT 59.234 37.037 0.00 0.00 36.88 3.16
3922 6680 9.764363 GACAATTAGGTATCACATAGTTCATCA 57.236 33.333 0.00 0.00 0.00 3.07
4027 6787 2.620115 CACCTTTGTCAGTCTGCAATGT 59.380 45.455 9.53 7.98 0.00 2.71
4166 6990 5.638596 AAAGGGATCGTCAAAATAACACC 57.361 39.130 0.00 0.00 0.00 4.16
4169 6993 8.027189 AGCTTAAAAAGGGATCGTCAAAATAAC 58.973 33.333 0.00 0.00 0.00 1.89
4186 7010 8.522830 CAGTGGAAATGATAAGGAGCTTAAAAA 58.477 33.333 0.00 0.00 30.28 1.94
4270 7094 1.959042 ATTCGCAAGTGCTGATAGGG 58.041 50.000 1.21 0.00 39.32 3.53
4506 7639 9.706691 TTTTTCTGAATCGGATGTATATAGACC 57.293 33.333 0.00 0.00 0.00 3.85
4540 7674 6.099125 TCCCTCCGTTCACAAATATAAGATGA 59.901 38.462 0.00 0.00 0.00 2.92
4670 7987 2.510238 GCAGGTCCTAGCGCTGTG 60.510 66.667 22.90 12.83 0.00 3.66
4743 8209 3.869832 CCTGAGATATGCTGGCGATATTG 59.130 47.826 0.00 0.00 0.00 1.90
4785 8253 1.077930 CACATGGCCTGGAGGACTG 60.078 63.158 3.32 0.00 45.91 3.51
4846 8476 5.897377 AGGTTAAATGTCAATGCCTACAC 57.103 39.130 0.00 0.00 0.00 2.90
4853 8686 9.912634 AACATCTACAAAGGTTAAATGTCAATG 57.087 29.630 0.00 0.00 0.00 2.82
4906 8753 2.099405 TCAGATGTAGCATCGTCCACA 58.901 47.619 3.81 0.00 0.00 4.17
4912 8759 6.775939 AATTGTACATCAGATGTAGCATCG 57.224 37.500 21.60 0.00 45.62 3.84
4968 8817 2.088950 ACCGGTGTTTTACTCCATCG 57.911 50.000 6.12 0.00 35.04 3.84
5046 8896 9.599866 CAAACCATTATCAGTAATCTCAGTACA 57.400 33.333 0.00 0.00 0.00 2.90
5126 8989 9.472361 TGTCTCAGTTTAAGTTACATTGTACTC 57.528 33.333 0.00 0.00 0.00 2.59
5127 8990 9.477484 CTGTCTCAGTTTAAGTTACATTGTACT 57.523 33.333 0.00 0.00 0.00 2.73
5128 8991 8.709646 CCTGTCTCAGTTTAAGTTACATTGTAC 58.290 37.037 0.00 0.00 0.00 2.90
5129 8992 8.426489 ACCTGTCTCAGTTTAAGTTACATTGTA 58.574 33.333 0.00 0.00 0.00 2.41
5130 8993 7.280356 ACCTGTCTCAGTTTAAGTTACATTGT 58.720 34.615 0.00 0.00 0.00 2.71
5258 9128 0.671781 CGAGAAACTCCAGGCAGGTG 60.672 60.000 0.00 0.00 39.02 4.00
5260 9130 0.390472 GACGAGAAACTCCAGGCAGG 60.390 60.000 0.00 0.00 39.47 4.85
5279 9151 0.458543 ACAAGCGCACAGATAGGACG 60.459 55.000 11.47 0.00 0.00 4.79
5303 9175 2.494059 GCAAAGCTCACAGGTCACTTA 58.506 47.619 0.00 0.00 0.00 2.24
5311 9183 0.036732 TGGTAGGGCAAAGCTCACAG 59.963 55.000 0.00 0.00 0.00 3.66
5317 9189 1.066929 CCATGTTTGGTAGGGCAAAGC 60.067 52.381 0.00 0.00 38.30 3.51
5361 9233 2.378038 GCCTCATAATTCACTGGGCAA 58.622 47.619 0.00 0.00 38.16 4.52
5363 9235 0.947244 CGCCTCATAATTCACTGGGC 59.053 55.000 0.00 0.00 35.33 5.36
5368 9240 6.358118 TGTTGATAACGCCTCATAATTCAC 57.642 37.500 0.00 0.00 0.00 3.18
5376 9248 4.195225 TGTACATGTTGATAACGCCTCA 57.805 40.909 2.30 0.00 0.00 3.86
5377 9249 5.734855 ATTGTACATGTTGATAACGCCTC 57.265 39.130 2.30 0.00 0.00 4.70
5378 9250 6.346096 AGTATTGTACATGTTGATAACGCCT 58.654 36.000 2.30 0.00 0.00 5.52
5379 9251 6.598753 AGTATTGTACATGTTGATAACGCC 57.401 37.500 2.30 0.00 0.00 5.68
5380 9252 8.814235 ACTTAGTATTGTACATGTTGATAACGC 58.186 33.333 2.30 0.00 0.00 4.84
5444 9316 8.914011 GGTAAGCTTTTCCCATATGAAATTAGT 58.086 33.333 3.20 0.00 34.41 2.24
5445 9317 8.076178 CGGTAAGCTTTTCCCATATGAAATTAG 58.924 37.037 3.20 0.00 34.41 1.73
5446 9318 7.558444 ACGGTAAGCTTTTCCCATATGAAATTA 59.442 33.333 3.20 0.00 34.41 1.40
5447 9319 6.379988 ACGGTAAGCTTTTCCCATATGAAATT 59.620 34.615 3.20 0.00 34.41 1.82
5448 9320 5.891551 ACGGTAAGCTTTTCCCATATGAAAT 59.108 36.000 3.20 0.00 34.41 2.17
5449 9321 5.258051 ACGGTAAGCTTTTCCCATATGAAA 58.742 37.500 3.20 0.00 32.60 2.69
5450 9322 4.850680 ACGGTAAGCTTTTCCCATATGAA 58.149 39.130 3.20 0.00 0.00 2.57
5451 9323 4.080807 TGACGGTAAGCTTTTCCCATATGA 60.081 41.667 3.20 0.00 0.00 2.15
5452 9324 4.035208 GTGACGGTAAGCTTTTCCCATATG 59.965 45.833 3.20 0.00 0.00 1.78
5453 9325 4.196971 GTGACGGTAAGCTTTTCCCATAT 58.803 43.478 3.20 0.00 0.00 1.78
5454 9326 3.602483 GTGACGGTAAGCTTTTCCCATA 58.398 45.455 3.20 0.00 0.00 2.74
5455 9327 2.433436 GTGACGGTAAGCTTTTCCCAT 58.567 47.619 3.20 0.00 0.00 4.00
5456 9328 1.543871 GGTGACGGTAAGCTTTTCCCA 60.544 52.381 3.20 0.08 0.00 4.37
5457 9329 1.162698 GGTGACGGTAAGCTTTTCCC 58.837 55.000 3.20 1.56 0.00 3.97
5458 9330 1.162698 GGGTGACGGTAAGCTTTTCC 58.837 55.000 3.20 7.30 0.00 3.13
5459 9331 0.794473 CGGGTGACGGTAAGCTTTTC 59.206 55.000 3.20 0.00 39.42 2.29
5460 9332 2.922779 CGGGTGACGGTAAGCTTTT 58.077 52.632 3.20 0.00 39.42 2.27
5461 9333 4.687464 CGGGTGACGGTAAGCTTT 57.313 55.556 3.20 0.00 39.42 3.51
5480 9352 1.829349 GATTCTGCCGCTGCGATCAG 61.829 60.000 25.45 26.17 41.78 2.90
5481 9353 1.884464 GATTCTGCCGCTGCGATCA 60.884 57.895 25.45 18.71 41.78 2.92
5482 9354 1.593750 AGATTCTGCCGCTGCGATC 60.594 57.895 25.45 17.24 41.78 3.69
5483 9355 1.886313 CAGATTCTGCCGCTGCGAT 60.886 57.895 25.45 8.39 41.78 4.58
5484 9356 2.510012 CAGATTCTGCCGCTGCGA 60.510 61.111 25.45 2.65 41.78 5.10
5493 9365 1.225704 GGGGAGGTGGCAGATTCTG 59.774 63.158 9.40 9.40 34.12 3.02
5494 9366 1.083706 AGGGGAGGTGGCAGATTCT 59.916 57.895 0.00 0.00 0.00 2.40
5495 9367 1.225704 CAGGGGAGGTGGCAGATTC 59.774 63.158 0.00 0.00 0.00 2.52
5496 9368 2.988839 GCAGGGGAGGTGGCAGATT 61.989 63.158 0.00 0.00 0.00 2.40
5497 9369 3.415087 GCAGGGGAGGTGGCAGAT 61.415 66.667 0.00 0.00 0.00 2.90
5498 9370 4.980592 TGCAGGGGAGGTGGCAGA 62.981 66.667 0.00 0.00 0.00 4.26
5499 9371 3.736224 ATGCAGGGGAGGTGGCAG 61.736 66.667 0.00 0.00 39.95 4.85
5500 9372 4.051167 CATGCAGGGGAGGTGGCA 62.051 66.667 0.00 0.00 41.00 4.92
5501 9373 3.731728 TCATGCAGGGGAGGTGGC 61.732 66.667 0.00 0.00 0.00 5.01
5502 9374 2.273449 GTCATGCAGGGGAGGTGG 59.727 66.667 0.00 0.00 0.00 4.61
5503 9375 1.377725 GTGTCATGCAGGGGAGGTG 60.378 63.158 0.00 0.00 0.00 4.00
5504 9376 1.847506 TGTGTCATGCAGGGGAGGT 60.848 57.895 0.00 0.00 0.00 3.85
5505 9377 1.377725 GTGTGTCATGCAGGGGAGG 60.378 63.158 0.00 0.00 0.00 4.30
5506 9378 1.742880 CGTGTGTCATGCAGGGGAG 60.743 63.158 0.00 0.00 0.00 4.30
5507 9379 2.347114 CGTGTGTCATGCAGGGGA 59.653 61.111 0.00 0.00 0.00 4.81
5508 9380 2.032528 ACGTGTGTCATGCAGGGG 59.967 61.111 0.00 0.00 0.00 4.79
5509 9381 3.566261 GACGTGTGTCATGCAGGG 58.434 61.111 0.00 0.00 44.82 4.45
5517 9389 1.006102 CCCTCACTGGACGTGTGTC 60.006 63.158 0.00 0.00 44.16 3.67
5518 9390 1.335132 AACCCTCACTGGACGTGTGT 61.335 55.000 0.00 0.00 44.16 3.72
5519 9391 0.600255 GAACCCTCACTGGACGTGTG 60.600 60.000 0.00 0.00 44.16 3.82
5520 9392 1.746517 GAACCCTCACTGGACGTGT 59.253 57.895 0.00 0.00 44.16 4.49
5521 9393 1.372997 CGAACCCTCACTGGACGTG 60.373 63.158 0.00 0.00 45.18 4.49
5522 9394 1.111116 TTCGAACCCTCACTGGACGT 61.111 55.000 0.00 0.00 38.35 4.34
5523 9395 0.246635 ATTCGAACCCTCACTGGACG 59.753 55.000 0.00 0.00 38.35 4.79
5524 9396 2.418334 GGTATTCGAACCCTCACTGGAC 60.418 54.545 0.00 0.00 38.35 4.02
5525 9397 1.829222 GGTATTCGAACCCTCACTGGA 59.171 52.381 0.00 0.00 38.35 3.86
5526 9398 1.470979 CGGTATTCGAACCCTCACTGG 60.471 57.143 0.00 0.00 42.43 4.00
5527 9399 1.922570 CGGTATTCGAACCCTCACTG 58.077 55.000 0.00 0.00 42.43 3.66
5528 9400 0.175073 GCGGTATTCGAACCCTCACT 59.825 55.000 0.00 0.00 42.43 3.41
5529 9401 0.808847 GGCGGTATTCGAACCCTCAC 60.809 60.000 0.00 0.00 42.43 3.51
5530 9402 1.259142 TGGCGGTATTCGAACCCTCA 61.259 55.000 0.00 2.61 42.43 3.86
5531 9403 0.108041 TTGGCGGTATTCGAACCCTC 60.108 55.000 0.00 0.00 42.43 4.30
5532 9404 0.325602 TTTGGCGGTATTCGAACCCT 59.674 50.000 0.00 0.00 42.43 4.34
5533 9405 0.448990 GTTTGGCGGTATTCGAACCC 59.551 55.000 0.00 2.42 42.43 4.11
5534 9406 1.158434 TGTTTGGCGGTATTCGAACC 58.842 50.000 0.00 0.00 42.43 3.62
5535 9407 2.780993 CATGTTTGGCGGTATTCGAAC 58.219 47.619 0.00 0.00 42.43 3.95
5536 9408 1.131504 GCATGTTTGGCGGTATTCGAA 59.868 47.619 0.00 0.00 42.43 3.71
5537 9409 0.730265 GCATGTTTGGCGGTATTCGA 59.270 50.000 0.00 0.00 42.43 3.71
5538 9410 0.732571 AGCATGTTTGGCGGTATTCG 59.267 50.000 0.00 0.00 42.76 3.34
5539 9411 2.423538 AGAAGCATGTTTGGCGGTATTC 59.576 45.455 0.00 0.00 36.08 1.75
5540 9412 2.164219 CAGAAGCATGTTTGGCGGTATT 59.836 45.455 0.00 0.00 36.08 1.89
5541 9413 1.745087 CAGAAGCATGTTTGGCGGTAT 59.255 47.619 0.00 0.00 36.08 2.73
5542 9414 1.164411 CAGAAGCATGTTTGGCGGTA 58.836 50.000 0.00 0.00 36.08 4.02
5543 9415 1.959085 CAGAAGCATGTTTGGCGGT 59.041 52.632 0.00 0.00 36.08 5.68
5544 9416 1.444895 GCAGAAGCATGTTTGGCGG 60.445 57.895 0.00 0.00 41.58 6.13
5545 9417 4.157817 GCAGAAGCATGTTTGGCG 57.842 55.556 0.00 0.00 41.58 5.69
5555 9427 1.063174 CATAGCCTTCGTTGCAGAAGC 59.937 52.381 9.62 6.23 44.56 3.86
5556 9428 1.063174 GCATAGCCTTCGTTGCAGAAG 59.937 52.381 8.39 8.39 45.26 2.85
5557 9429 1.086696 GCATAGCCTTCGTTGCAGAA 58.913 50.000 0.00 0.00 35.22 3.02
5558 9430 1.083806 CGCATAGCCTTCGTTGCAGA 61.084 55.000 0.00 0.00 34.80 4.26
5559 9431 1.349627 CGCATAGCCTTCGTTGCAG 59.650 57.895 0.00 0.00 34.80 4.41
5560 9432 2.106074 CCGCATAGCCTTCGTTGCA 61.106 57.895 0.00 0.00 34.80 4.08
5561 9433 2.106683 ACCGCATAGCCTTCGTTGC 61.107 57.895 0.00 0.00 0.00 4.17
5562 9434 1.019278 ACACCGCATAGCCTTCGTTG 61.019 55.000 0.00 0.00 0.00 4.10
5563 9435 0.321298 AACACCGCATAGCCTTCGTT 60.321 50.000 0.00 0.00 0.00 3.85
5564 9436 1.019278 CAACACCGCATAGCCTTCGT 61.019 55.000 0.00 0.00 0.00 3.85
5565 9437 1.715585 CAACACCGCATAGCCTTCG 59.284 57.895 0.00 0.00 0.00 3.79
5566 9438 1.305219 TGCAACACCGCATAGCCTTC 61.305 55.000 0.00 0.00 36.86 3.46
5567 9439 0.893270 TTGCAACACCGCATAGCCTT 60.893 50.000 0.00 0.00 42.62 4.35
5568 9440 0.680921 ATTGCAACACCGCATAGCCT 60.681 50.000 0.00 0.00 42.62 4.58
5569 9441 0.526096 CATTGCAACACCGCATAGCC 60.526 55.000 0.00 0.00 42.62 3.93
5570 9442 0.526096 CCATTGCAACACCGCATAGC 60.526 55.000 0.00 0.00 42.62 2.97
5571 9443 0.810648 ACCATTGCAACACCGCATAG 59.189 50.000 0.00 0.00 42.62 2.23
5572 9444 0.808125 GACCATTGCAACACCGCATA 59.192 50.000 0.00 0.00 42.62 3.14
5573 9445 0.895100 AGACCATTGCAACACCGCAT 60.895 50.000 0.00 0.00 42.62 4.73
5574 9446 0.250510 TAGACCATTGCAACACCGCA 60.251 50.000 0.00 0.00 41.03 5.69
5575 9447 0.447801 CTAGACCATTGCAACACCGC 59.552 55.000 0.00 0.00 0.00 5.68
5576 9448 1.808411 ACTAGACCATTGCAACACCG 58.192 50.000 0.00 0.00 0.00 4.94
5577 9449 4.513442 TCATACTAGACCATTGCAACACC 58.487 43.478 0.00 0.00 0.00 4.16
5578 9450 6.510157 CGATTCATACTAGACCATTGCAACAC 60.510 42.308 0.00 0.00 0.00 3.32
5579 9451 5.523552 CGATTCATACTAGACCATTGCAACA 59.476 40.000 0.00 0.00 0.00 3.33
5580 9452 5.523916 ACGATTCATACTAGACCATTGCAAC 59.476 40.000 0.00 0.00 0.00 4.17
5581 9453 5.523552 CACGATTCATACTAGACCATTGCAA 59.476 40.000 0.00 0.00 0.00 4.08
5582 9454 5.049828 CACGATTCATACTAGACCATTGCA 58.950 41.667 0.00 0.00 0.00 4.08
5583 9455 5.050490 ACACGATTCATACTAGACCATTGC 58.950 41.667 0.00 0.00 0.00 3.56
5584 9456 7.539712 AAACACGATTCATACTAGACCATTG 57.460 36.000 0.00 0.00 0.00 2.82
5585 9457 9.095065 GTAAAACACGATTCATACTAGACCATT 57.905 33.333 0.00 0.00 0.00 3.16
5586 9458 8.255206 TGTAAAACACGATTCATACTAGACCAT 58.745 33.333 0.00 0.00 0.00 3.55
5587 9459 7.604549 TGTAAAACACGATTCATACTAGACCA 58.395 34.615 0.00 0.00 0.00 4.02
5588 9460 8.378421 GTTGTAAAACACGATTCATACTAGACC 58.622 37.037 0.00 0.00 0.00 3.85
5589 9461 8.918658 TGTTGTAAAACACGATTCATACTAGAC 58.081 33.333 0.00 0.00 0.00 2.59
5590 9462 9.478768 TTGTTGTAAAACACGATTCATACTAGA 57.521 29.630 0.00 0.00 31.49 2.43
5593 9465 9.228636 GTTTTGTTGTAAAACACGATTCATACT 57.771 29.630 0.00 0.00 39.30 2.12
5594 9466 9.011407 TGTTTTGTTGTAAAACACGATTCATAC 57.989 29.630 12.40 0.00 42.96 2.39
5605 9477 6.020995 CCACGACAGATGTTTTGTTGTAAAAC 60.021 38.462 7.99 7.99 40.35 2.43
5606 9478 6.030849 CCACGACAGATGTTTTGTTGTAAAA 58.969 36.000 0.00 0.00 40.35 1.52
5607 9479 5.354513 TCCACGACAGATGTTTTGTTGTAAA 59.645 36.000 0.00 0.00 40.35 2.01
5608 9480 4.876679 TCCACGACAGATGTTTTGTTGTAA 59.123 37.500 0.00 0.00 40.35 2.41
5609 9481 4.443621 TCCACGACAGATGTTTTGTTGTA 58.556 39.130 0.00 0.00 40.35 2.41
5610 9482 3.275143 TCCACGACAGATGTTTTGTTGT 58.725 40.909 0.00 0.00 42.47 3.32
5611 9483 3.961477 TCCACGACAGATGTTTTGTTG 57.039 42.857 0.00 0.00 36.27 3.33
5612 9484 5.514274 AATTCCACGACAGATGTTTTGTT 57.486 34.783 0.00 0.00 0.00 2.83
5613 9485 5.514274 AAATTCCACGACAGATGTTTTGT 57.486 34.783 0.00 0.00 0.00 2.83
5614 9486 6.826893 AAAAATTCCACGACAGATGTTTTG 57.173 33.333 0.00 0.00 0.00 2.44
5635 9507 2.733956 ACTGAGGTCTGGTTGCAAAAA 58.266 42.857 0.00 0.00 0.00 1.94
5636 9508 2.426738 CAACTGAGGTCTGGTTGCAAAA 59.573 45.455 0.00 0.00 34.85 2.44
5637 9509 2.023673 CAACTGAGGTCTGGTTGCAAA 58.976 47.619 0.00 0.00 34.85 3.68
5638 9510 1.679139 CAACTGAGGTCTGGTTGCAA 58.321 50.000 0.00 0.00 34.85 4.08
5639 9511 3.402186 CAACTGAGGTCTGGTTGCA 57.598 52.632 0.00 0.00 34.85 4.08
5641 9513 1.679139 TTGCAACTGAGGTCTGGTTG 58.321 50.000 0.00 0.00 41.96 3.77
5642 9514 2.435372 TTTGCAACTGAGGTCTGGTT 57.565 45.000 0.00 0.00 0.00 3.67
5643 9515 2.435372 TTTTGCAACTGAGGTCTGGT 57.565 45.000 0.00 0.00 0.00 4.00
5644 9516 5.452078 TTATTTTTGCAACTGAGGTCTGG 57.548 39.130 0.00 0.00 0.00 3.86
5645 9517 7.951530 AAATTATTTTTGCAACTGAGGTCTG 57.048 32.000 0.00 0.00 0.00 3.51
5646 9518 8.369218 CAAAATTATTTTTGCAACTGAGGTCT 57.631 30.769 0.00 0.00 43.67 3.85
5659 9531 9.934190 CAGCTGTTTAGTTGCAAAATTATTTTT 57.066 25.926 5.25 0.00 35.41 1.94
5660 9532 9.108284 ACAGCTGTTTAGTTGCAAAATTATTTT 57.892 25.926 15.25 0.00 38.56 1.82
5661 9533 8.661352 ACAGCTGTTTAGTTGCAAAATTATTT 57.339 26.923 15.25 0.00 38.56 1.40
5662 9534 8.550376 CAACAGCTGTTTAGTTGCAAAATTATT 58.450 29.630 29.23 0.00 38.56 1.40
5663 9535 8.075593 CAACAGCTGTTTAGTTGCAAAATTAT 57.924 30.769 29.23 0.00 38.56 1.28
5664 9536 7.462109 CAACAGCTGTTTAGTTGCAAAATTA 57.538 32.000 29.23 0.00 38.56 1.40
5665 9537 6.348621 CAACAGCTGTTTAGTTGCAAAATT 57.651 33.333 29.23 0.16 38.56 1.82
5666 9538 5.971895 CAACAGCTGTTTAGTTGCAAAAT 57.028 34.783 29.23 0.65 38.56 1.82
5672 9544 5.776519 TTTTTGCAACAGCTGTTTAGTTG 57.223 34.783 29.23 19.22 44.01 3.16
5691 9563 6.925165 ACATCGATCTTGTTGCAGAAATTTTT 59.075 30.769 0.00 0.00 0.00 1.94
5692 9564 6.449698 ACATCGATCTTGTTGCAGAAATTTT 58.550 32.000 0.00 0.00 0.00 1.82
5693 9565 6.017400 ACATCGATCTTGTTGCAGAAATTT 57.983 33.333 0.00 0.00 0.00 1.82
5694 9566 5.633830 ACATCGATCTTGTTGCAGAAATT 57.366 34.783 0.00 0.00 0.00 1.82
5695 9567 5.633830 AACATCGATCTTGTTGCAGAAAT 57.366 34.783 9.37 0.00 36.02 2.17
5696 9568 5.008514 TGAAACATCGATCTTGTTGCAGAAA 59.991 36.000 12.65 0.00 37.64 2.52
5697 9569 4.514816 TGAAACATCGATCTTGTTGCAGAA 59.485 37.500 12.65 0.00 37.64 3.02
5698 9570 4.064388 TGAAACATCGATCTTGTTGCAGA 58.936 39.130 12.65 0.00 37.64 4.26
5699 9571 4.408993 TGAAACATCGATCTTGTTGCAG 57.591 40.909 12.65 0.00 37.64 4.41
5700 9572 4.064388 TCTGAAACATCGATCTTGTTGCA 58.936 39.130 14.83 14.83 39.72 4.08
5701 9573 4.668576 TCTGAAACATCGATCTTGTTGC 57.331 40.909 10.55 9.59 37.38 4.17
5702 9574 9.778993 ATTATTTCTGAAACATCGATCTTGTTG 57.221 29.630 4.73 0.00 37.38 3.33
5704 9576 9.994432 GAATTATTTCTGAAACATCGATCTTGT 57.006 29.630 4.73 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.