Multiple sequence alignment - TraesCS1A01G272200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G272200 chr1A 100.000 7220 0 0 1 7220 465464185 465471404 0.000000e+00 13333.0
1 TraesCS1A01G272200 chr1B 89.871 2320 137 52 4967 7220 491085905 491088192 0.000000e+00 2892.0
2 TraesCS1A01G272200 chr1B 91.924 1622 87 23 509 2103 491081347 491082951 0.000000e+00 2230.0
3 TraesCS1A01G272200 chr1B 88.699 1699 142 27 2589 4263 491083534 491085206 0.000000e+00 2028.0
4 TraesCS1A01G272200 chr1B 92.135 356 25 2 2122 2477 491083044 491083396 3.890000e-137 499.0
5 TraesCS1A01G272200 chr1B 89.524 105 10 1 75 178 359902046 359902150 1.630000e-26 132.0
6 TraesCS1A01G272200 chr1B 96.429 56 2 0 2483 2538 491083481 491083536 7.710000e-15 93.5
7 TraesCS1A01G272200 chr1B 85.185 81 5 3 391 469 324790123 324790198 7.770000e-10 76.8
8 TraesCS1A01G272200 chr1B 92.500 40 2 1 2533 2572 614185497 614185459 1.000000e-03 56.5
9 TraesCS1A01G272200 chr1D 92.315 2056 122 19 510 2538 366680264 366678218 0.000000e+00 2889.0
10 TraesCS1A01G272200 chr1D 91.584 1616 80 18 5648 7220 366674920 366673318 0.000000e+00 2180.0
11 TraesCS1A01G272200 chr1D 84.034 1973 195 45 3387 5287 366677274 366675350 0.000000e+00 1788.0
12 TraesCS1A01G272200 chr1D 90.323 806 52 16 2589 3388 366678220 366677435 0.000000e+00 1033.0
13 TraesCS1A01G272200 chr1D 87.712 472 35 8 861 1316 197778607 197778143 4.960000e-146 529.0
14 TraesCS1A01G272200 chr1D 89.764 127 12 1 2 127 366680882 366680756 2.080000e-35 161.0
15 TraesCS1A01G272200 chr1D 100.000 29 0 0 2567 2595 22957661 22957633 4.000000e-03 54.7
16 TraesCS1A01G272200 chr1D 96.875 32 1 0 2567 2598 371198874 371198843 4.000000e-03 54.7
17 TraesCS1A01G272200 chr6B 90.476 105 9 1 73 177 346556987 346556884 3.510000e-28 137.0
18 TraesCS1A01G272200 chr6B 88.393 112 13 0 62 173 641674178 641674067 1.260000e-27 135.0
19 TraesCS1A01G272200 chr6B 86.842 76 3 5 396 469 482150054 482149984 2.160000e-10 78.7
20 TraesCS1A01G272200 chr6B 96.970 33 1 0 2567 2599 477834052 477834084 1.000000e-03 56.5
21 TraesCS1A01G272200 chr3D 89.815 108 10 1 66 173 556072215 556072109 3.510000e-28 137.0
22 TraesCS1A01G272200 chr7B 91.000 100 9 0 74 173 589348418 589348319 1.260000e-27 135.0
23 TraesCS1A01G272200 chr7B 86.842 76 3 5 396 469 618670019 618669949 2.160000e-10 78.7
24 TraesCS1A01G272200 chr7B 92.683 41 2 1 2534 2574 199754774 199754735 2.810000e-04 58.4
25 TraesCS1A01G272200 chr7B 92.500 40 2 1 2533 2572 730141466 730141428 1.000000e-03 56.5
26 TraesCS1A01G272200 chr6A 91.753 97 8 0 77 173 571277146 571277242 1.260000e-27 135.0
27 TraesCS1A01G272200 chr6A 100.000 29 0 0 2567 2595 447873663 447873691 4.000000e-03 54.7
28 TraesCS1A01G272200 chr7D 90.816 98 9 0 76 173 473596184 473596281 1.630000e-26 132.0
29 TraesCS1A01G272200 chr7D 90.816 98 8 1 77 173 58787937 58788034 5.880000e-26 130.0
30 TraesCS1A01G272200 chr7D 87.805 82 2 5 391 469 117763290 117763366 9.980000e-14 89.8
31 TraesCS1A01G272200 chr4D 84.884 86 6 3 386 469 5569931 5570011 6.000000e-11 80.5
32 TraesCS1A01G272200 chr5A 86.842 76 3 6 396 469 332033969 332034039 2.160000e-10 78.7
33 TraesCS1A01G272200 chr5A 86.842 76 3 6 396 469 478242640 478242710 2.160000e-10 78.7
34 TraesCS1A01G272200 chr5A 90.476 42 3 1 2533 2574 417902106 417902146 4.000000e-03 54.7
35 TraesCS1A01G272200 chr4B 86.842 76 3 6 396 469 230379531 230379601 2.160000e-10 78.7
36 TraesCS1A01G272200 chr4B 86.842 76 3 6 396 469 230411943 230412013 2.160000e-10 78.7
37 TraesCS1A01G272200 chr7A 94.737 38 1 1 2523 2560 556152012 556151976 2.810000e-04 58.4
38 TraesCS1A01G272200 chr7A 92.500 40 2 1 2533 2572 55160744 55160706 1.000000e-03 56.5
39 TraesCS1A01G272200 chr7A 92.500 40 2 1 2530 2569 581152520 581152558 1.000000e-03 56.5
40 TraesCS1A01G272200 chr5D 100.000 30 0 0 2566 2595 446275488 446275517 1.000000e-03 56.5
41 TraesCS1A01G272200 chr5D 96.970 33 1 0 2567 2599 558068090 558068058 1.000000e-03 56.5
42 TraesCS1A01G272200 chr5D 100.000 29 0 0 2567 2595 540591176 540591148 4.000000e-03 54.7
43 TraesCS1A01G272200 chr5D 100.000 29 0 0 2567 2595 540835712 540835684 4.000000e-03 54.7
44 TraesCS1A01G272200 chr3B 85.455 55 7 1 2520 2574 264012965 264013018 1.000000e-03 56.5
45 TraesCS1A01G272200 chrUn 100.000 29 0 0 2567 2595 112683085 112683113 4.000000e-03 54.7
46 TraesCS1A01G272200 chr2B 90.476 42 3 1 2533 2574 200473734 200473694 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G272200 chr1A 465464185 465471404 7219 False 13333.0 13333 100.0000 1 7220 1 chr1A.!!$F1 7219
1 TraesCS1A01G272200 chr1B 491081347 491088192 6845 False 1548.5 2892 91.8116 509 7220 5 chr1B.!!$F3 6711
2 TraesCS1A01G272200 chr1D 366673318 366680882 7564 True 1610.2 2889 89.6040 2 7220 5 chr1D.!!$R4 7218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 91 0.034380 GGAAAGTACTCCCCTTGCCC 60.034 60.0 0.00 0.00 32.18 5.36 F
1669 1813 0.179045 ATCCTGGTATTGTGCCTCGC 60.179 55.0 0.00 0.00 0.00 5.03 F
1873 2017 0.388649 ACTGTGTGGAGCGATTCGAC 60.389 55.0 10.88 2.76 35.32 4.20 F
3585 4052 0.676184 AGTCATCCGATATGCACGCT 59.324 50.0 0.00 0.00 0.00 5.07 F
4583 5135 0.033504 TTGGACGAGCAGGTGTTCTC 59.966 55.0 0.00 0.00 0.00 2.87 F
5644 6620 0.394080 GCTCAAGGCCTCTTCTGCAT 60.394 55.0 5.23 0.00 32.26 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 2017 1.002017 AACCCAGGGGCAATGATGG 59.998 57.895 11.37 0.00 39.32 3.51 R
2605 2903 0.251474 TGCAGGCCAGCTGATTCTTT 60.251 50.000 21.82 0.00 34.99 2.52 R
3730 4206 0.249911 GTCTTTGAGTCGTGCACCCT 60.250 55.000 12.15 7.38 0.00 4.34 R
4648 5208 0.031857 CTTTGCATGTGCCGACCAAA 59.968 50.000 2.07 0.00 41.18 3.28 R
5976 6955 0.393448 TCCCCATTTCGACGTCAACA 59.607 50.000 17.16 0.00 0.00 3.33 R
6453 7448 1.071605 GGCATCGAACACTGTCAGAC 58.928 55.000 6.91 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 5.903010 TCTAGAAGTCTTGTAATATGGCCCA 59.097 40.000 0.00 0.00 0.00 5.36
29 31 3.194005 AGTCTTGTAATATGGCCCACG 57.806 47.619 0.00 0.00 0.00 4.94
31 33 0.586319 CTTGTAATATGGCCCACGCG 59.414 55.000 3.53 3.53 35.02 6.01
84 86 7.707467 ATATTATGTTGGAAAGTACTCCCCT 57.293 36.000 12.88 0.00 34.22 4.79
85 87 5.853572 TTATGTTGGAAAGTACTCCCCTT 57.146 39.130 12.88 0.00 34.22 3.95
87 89 2.160205 GTTGGAAAGTACTCCCCTTGC 58.840 52.381 12.88 3.03 34.22 4.01
89 91 0.034380 GGAAAGTACTCCCCTTGCCC 60.034 60.000 0.00 0.00 32.18 5.36
93 95 1.001269 GTACTCCCCTTGCCCCAAC 60.001 63.158 0.00 0.00 0.00 3.77
107 109 2.749621 GCCCCAACATAAGTGTCTCAAG 59.250 50.000 0.00 0.00 37.67 3.02
138 140 7.795482 ACAACTTTGTACTGCAGTTAATACA 57.205 32.000 27.06 20.01 40.16 2.29
139 141 8.215926 ACAACTTTGTACTGCAGTTAATACAA 57.784 30.769 27.06 24.52 40.16 2.41
145 253 8.439993 TTGTACTGCAGTTAATACAAAGTTGA 57.560 30.769 27.06 3.99 35.23 3.18
166 274 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
172 280 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
179 287 5.786264 TGAGACGGAGGGAGTAATAAATC 57.214 43.478 0.00 0.00 0.00 2.17
183 291 5.602978 AGACGGAGGGAGTAATAAATCATGT 59.397 40.000 0.00 0.00 0.00 3.21
187 295 6.239317 CGGAGGGAGTAATAAATCATGTGAGA 60.239 42.308 0.00 0.00 0.00 3.27
258 368 7.559897 TGTCACATTAAATAAAAGGATCCCTCC 59.440 37.037 8.55 0.00 42.43 4.30
263 373 9.987272 CATTAAATAAAAGGATCCCTCCAAATC 57.013 33.333 8.55 0.00 44.79 2.17
264 374 8.547481 TTAAATAAAAGGATCCCTCCAAATCC 57.453 34.615 8.55 0.00 44.79 3.01
278 388 4.947645 TCCAAATCCACTCAAAGCTTTTG 58.052 39.130 9.53 5.64 0.00 2.44
290 400 4.036734 TCAAAGCTTTTGAGTGAGCGAAAT 59.963 37.500 9.53 0.00 43.53 2.17
297 407 6.129088 GCTTTTGAGTGAGCGAAATTAAAAGG 60.129 38.462 15.45 1.17 35.53 3.11
298 408 6.385649 TTTGAGTGAGCGAAATTAAAAGGT 57.614 33.333 0.00 0.00 0.00 3.50
300 410 5.997385 TGAGTGAGCGAAATTAAAAGGTTC 58.003 37.500 0.00 0.00 0.00 3.62
316 426 5.957842 AAGGTTCTGATTTGCACGATTAA 57.042 34.783 0.00 0.00 0.00 1.40
319 429 6.381801 AGGTTCTGATTTGCACGATTAAAAG 58.618 36.000 0.00 0.00 0.00 2.27
323 433 5.123820 TCTGATTTGCACGATTAAAAGAGGG 59.876 40.000 0.00 0.00 0.00 4.30
327 437 3.343617 TGCACGATTAAAAGAGGGAAGG 58.656 45.455 0.00 0.00 0.00 3.46
340 450 8.526667 AAAAGAGGGAAGGATCTTAAAATAGC 57.473 34.615 0.00 0.00 34.71 2.97
342 452 6.836242 AGAGGGAAGGATCTTAAAATAGCAG 58.164 40.000 0.00 0.00 0.00 4.24
343 453 5.380900 AGGGAAGGATCTTAAAATAGCAGC 58.619 41.667 0.00 0.00 0.00 5.25
347 457 7.201947 GGGAAGGATCTTAAAATAGCAGCATTT 60.202 37.037 0.00 0.00 0.00 2.32
358 468 7.884816 AAATAGCAGCATTTCAATGATATGC 57.115 32.000 24.47 24.47 43.66 3.14
383 493 9.397280 GCTAGTCCTTTAGAAAACTATGGAATT 57.603 33.333 0.00 0.00 0.00 2.17
386 496 9.807921 AGTCCTTTAGAAAACTATGGAATTGAA 57.192 29.630 0.00 0.00 0.00 2.69
395 505 9.841880 GAAAACTATGGAATTGAAAACTACTCC 57.158 33.333 0.00 0.00 0.00 3.85
396 506 7.939784 AACTATGGAATTGAAAACTACTCCC 57.060 36.000 0.00 0.00 0.00 4.30
397 507 7.272144 ACTATGGAATTGAAAACTACTCCCT 57.728 36.000 0.00 0.00 0.00 4.20
398 508 7.339482 ACTATGGAATTGAAAACTACTCCCTC 58.661 38.462 0.00 0.00 0.00 4.30
399 509 4.918588 TGGAATTGAAAACTACTCCCTCC 58.081 43.478 0.00 0.00 0.00 4.30
404 514 3.999046 TGAAAACTACTCCCTCCGTTTC 58.001 45.455 0.00 0.00 0.00 2.78
405 515 3.644738 TGAAAACTACTCCCTCCGTTTCT 59.355 43.478 0.00 0.00 0.00 2.52
406 516 4.834496 TGAAAACTACTCCCTCCGTTTCTA 59.166 41.667 0.00 0.00 0.00 2.10
407 517 5.305128 TGAAAACTACTCCCTCCGTTTCTAA 59.695 40.000 0.00 0.00 0.00 2.10
408 518 5.813513 AAACTACTCCCTCCGTTTCTAAA 57.186 39.130 0.00 0.00 0.00 1.85
409 519 6.370186 AAACTACTCCCTCCGTTTCTAAAT 57.630 37.500 0.00 0.00 0.00 1.40
411 521 7.672122 AACTACTCCCTCCGTTTCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
412 522 7.052142 ACTACTCCCTCCGTTTCTAAATATG 57.948 40.000 0.00 0.00 0.00 1.78
414 524 4.966805 ACTCCCTCCGTTTCTAAATATGGA 59.033 41.667 0.00 0.00 0.00 3.41
415 525 5.070580 ACTCCCTCCGTTTCTAAATATGGAG 59.929 44.000 0.00 0.00 42.07 3.86
416 526 4.966805 TCCCTCCGTTTCTAAATATGGAGT 59.033 41.667 14.76 0.00 41.08 3.85
417 527 6.138263 TCCCTCCGTTTCTAAATATGGAGTA 58.862 40.000 14.76 5.70 41.08 2.59
419 529 6.929606 CCCTCCGTTTCTAAATATGGAGTAAG 59.070 42.308 14.76 5.58 41.08 2.34
420 530 7.418712 CCCTCCGTTTCTAAATATGGAGTAAGT 60.419 40.741 14.76 0.00 41.08 2.24
421 531 7.652507 CCTCCGTTTCTAAATATGGAGTAAGTC 59.347 40.741 14.76 0.00 41.08 3.01
422 532 8.302515 TCCGTTTCTAAATATGGAGTAAGTCT 57.697 34.615 0.00 0.00 0.00 3.24
424 534 9.379791 CCGTTTCTAAATATGGAGTAAGTCTTT 57.620 33.333 0.00 0.00 0.00 2.52
435 545 7.648039 TGGAGTAAGTCTTTCTAGAGATTCC 57.352 40.000 0.00 0.00 0.00 3.01
436 546 7.182760 TGGAGTAAGTCTTTCTAGAGATTCCA 58.817 38.462 0.00 0.00 29.45 3.53
438 548 8.194769 GGAGTAAGTCTTTCTAGAGATTCCAAG 58.805 40.741 0.00 0.00 0.00 3.61
439 549 8.658840 AGTAAGTCTTTCTAGAGATTCCAAGT 57.341 34.615 0.00 0.00 0.00 3.16
440 550 8.527810 AGTAAGTCTTTCTAGAGATTCCAAGTG 58.472 37.037 0.00 0.00 0.00 3.16
442 552 4.873259 GTCTTTCTAGAGATTCCAAGTGGC 59.127 45.833 0.00 0.00 34.44 5.01
444 554 5.958380 TCTTTCTAGAGATTCCAAGTGGCTA 59.042 40.000 0.00 0.00 34.44 3.93
447 557 5.211973 TCTAGAGATTCCAAGTGGCTACAT 58.788 41.667 2.02 0.00 34.44 2.29
448 558 6.373759 TCTAGAGATTCCAAGTGGCTACATA 58.626 40.000 2.02 0.00 34.44 2.29
449 559 5.283457 AGAGATTCCAAGTGGCTACATAC 57.717 43.478 2.02 0.00 34.44 2.39
450 560 4.051922 GAGATTCCAAGTGGCTACATACG 58.948 47.826 2.02 0.00 34.44 3.06
451 561 2.684001 TTCCAAGTGGCTACATACGG 57.316 50.000 2.02 0.00 34.44 4.02
453 563 2.181125 TCCAAGTGGCTACATACGGAA 58.819 47.619 2.02 0.00 34.44 4.30
458 568 4.010667 AGTGGCTACATACGGAACAAAA 57.989 40.909 2.02 0.00 0.00 2.44
460 570 4.394920 AGTGGCTACATACGGAACAAAATG 59.605 41.667 2.02 0.00 0.00 2.32
461 571 4.393680 GTGGCTACATACGGAACAAAATGA 59.606 41.667 0.00 0.00 0.00 2.57
462 572 4.634004 TGGCTACATACGGAACAAAATGAG 59.366 41.667 0.00 0.00 0.00 2.90
464 574 5.447279 GGCTACATACGGAACAAAATGAGTG 60.447 44.000 0.00 0.00 0.00 3.51
465 575 5.350365 GCTACATACGGAACAAAATGAGTGA 59.650 40.000 0.00 0.00 0.00 3.41
466 576 6.128391 GCTACATACGGAACAAAATGAGTGAA 60.128 38.462 0.00 0.00 0.00 3.18
467 577 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
468 578 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
469 579 4.766404 ACGGAACAAAATGAGTGAATCC 57.234 40.909 0.00 0.00 0.00 3.01
472 582 5.243730 ACGGAACAAAATGAGTGAATCCAAT 59.756 36.000 0.00 0.00 0.00 3.16
473 583 5.801947 CGGAACAAAATGAGTGAATCCAATC 59.198 40.000 0.00 0.00 37.85 2.67
482 592 5.116180 TGAGTGAATCCAATCATACGGAAC 58.884 41.667 0.00 0.00 41.76 3.62
484 594 5.496556 AGTGAATCCAATCATACGGAACAA 58.503 37.500 0.00 0.00 34.22 2.83
485 595 5.943416 AGTGAATCCAATCATACGGAACAAA 59.057 36.000 0.00 0.00 34.22 2.83
486 596 6.603201 AGTGAATCCAATCATACGGAACAAAT 59.397 34.615 0.00 0.00 34.22 2.32
487 597 7.122650 AGTGAATCCAATCATACGGAACAAATT 59.877 33.333 0.00 0.00 34.22 1.82
488 598 8.402472 GTGAATCCAATCATACGGAACAAATTA 58.598 33.333 0.00 0.00 34.22 1.40
489 599 8.961634 TGAATCCAATCATACGGAACAAATTAA 58.038 29.630 0.00 0.00 34.22 1.40
491 601 9.581099 AATCCAATCATACGGAACAAATTAAAC 57.419 29.630 0.00 0.00 34.22 2.01
493 603 8.577296 TCCAATCATACGGAACAAATTAAACAA 58.423 29.630 0.00 0.00 0.00 2.83
494 604 9.364989 CCAATCATACGGAACAAATTAAACAAT 57.635 29.630 0.00 0.00 0.00 2.71
498 608 9.400638 TCATACGGAACAAATTAAACAATTGTC 57.599 29.630 12.39 0.00 36.33 3.18
503 613 8.383619 CGGAACAAATTAAACAATTGTCACAAA 58.616 29.630 12.39 4.60 36.33 2.83
540 655 4.952262 ACAACATATGAGATGCACACAC 57.048 40.909 10.38 0.00 0.00 3.82
610 727 4.816392 AGTTTTTCTTGTTGTTGTCCCAC 58.184 39.130 0.00 0.00 0.00 4.61
622 739 1.448540 GTCCCACGCACTCATGAGG 60.449 63.158 26.08 15.76 0.00 3.86
623 740 2.821366 CCCACGCACTCATGAGGC 60.821 66.667 26.08 22.70 0.00 4.70
625 742 2.104859 CCACGCACTCATGAGGCTG 61.105 63.158 26.08 20.90 0.00 4.85
626 743 1.375140 CACGCACTCATGAGGCTGT 60.375 57.895 26.08 21.19 0.00 4.40
627 744 1.079543 ACGCACTCATGAGGCTGTC 60.080 57.895 26.08 11.33 0.00 3.51
748 865 3.126453 ACTCTGCTCCCCCAAATTCTAT 58.874 45.455 0.00 0.00 0.00 1.98
791 908 1.812324 CGTTTTACACCTCACCAGCCA 60.812 52.381 0.00 0.00 0.00 4.75
840 960 0.813210 CAGCTTTCCTCGCCTCATCC 60.813 60.000 0.00 0.00 0.00 3.51
1059 1191 7.779798 TGGAAAGGGAATAATGTAAAGATCCTG 59.220 37.037 0.00 0.00 0.00 3.86
1114 1246 1.605712 CGTGAACTGGGAGTCTTGGTC 60.606 57.143 0.00 0.00 0.00 4.02
1116 1248 1.694150 TGAACTGGGAGTCTTGGTCTG 59.306 52.381 0.00 0.00 0.00 3.51
1118 1250 2.334006 ACTGGGAGTCTTGGTCTGAT 57.666 50.000 0.00 0.00 0.00 2.90
1119 1251 1.905215 ACTGGGAGTCTTGGTCTGATG 59.095 52.381 0.00 0.00 0.00 3.07
1131 1272 1.407437 GGTCTGATGATTTCTGCCCGT 60.407 52.381 0.00 0.00 0.00 5.28
1140 1281 3.502211 TGATTTCTGCCCGTTTCTTTCTC 59.498 43.478 0.00 0.00 0.00 2.87
1154 1295 2.236395 TCTTTCTCGGGGAATTCCACTC 59.764 50.000 24.21 12.47 37.25 3.51
1161 1302 0.253327 GGGAATTCCACTCCTCGCTT 59.747 55.000 25.67 0.00 37.91 4.68
1173 1314 1.395608 TCCTCGCTTTTTATTTCGGCG 59.604 47.619 0.00 0.00 45.93 6.46
1240 1381 2.048503 GGCGGCGTGAACAGTAGT 60.049 61.111 9.37 0.00 0.00 2.73
1260 1401 3.125829 AGTGCGCTTAGTGTGATTTGATG 59.874 43.478 9.73 0.00 0.00 3.07
1264 1405 3.424829 CGCTTAGTGTGATTTGATGCGTT 60.425 43.478 0.00 0.00 36.78 4.84
1275 1416 3.651480 GATGCGTTGCCGTGTGCTC 62.651 63.158 0.00 0.00 42.00 4.26
1324 1465 1.452145 GCGTGACATGGTTGGTTGGT 61.452 55.000 0.00 0.00 0.00 3.67
1381 1522 2.668632 GGACCCGATGCCAAGTCA 59.331 61.111 0.00 0.00 0.00 3.41
1450 1591 2.511373 TTCATCGCGCCGCATCTT 60.511 55.556 10.75 0.00 0.00 2.40
1459 1600 2.202932 CCGCATCTTCTCCACCGG 60.203 66.667 0.00 0.00 0.00 5.28
1495 1636 2.431023 AGGATACGCGATTCCTGCT 58.569 52.632 26.13 9.33 40.88 4.24
1532 1673 5.354767 TCATGATCTATGTGAGTTCACTGC 58.645 41.667 12.97 0.00 46.55 4.40
1533 1674 4.806640 TGATCTATGTGAGTTCACTGCA 57.193 40.909 12.97 0.00 46.55 4.41
1536 1677 1.657594 CTATGTGAGTTCACTGCAGCG 59.342 52.381 15.27 3.95 46.55 5.18
1552 1693 2.467826 GCGATTCCTGCAGGCAGTC 61.468 63.158 28.91 21.77 42.15 3.51
1566 1710 3.311871 CAGGCAGTCATCAGTTAATCAGC 59.688 47.826 0.00 0.00 0.00 4.26
1660 1804 1.051812 CGGCTCAGGATCCTGGTATT 58.948 55.000 35.95 2.11 43.75 1.89
1669 1813 0.179045 ATCCTGGTATTGTGCCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
1714 1858 4.996113 GCGTATGGCAATCCGTTG 57.004 55.556 0.00 0.00 42.87 4.10
1759 1903 3.203716 GCAGTTTCCCCGTATAAAGGAG 58.796 50.000 0.00 0.00 0.00 3.69
1873 2017 0.388649 ACTGTGTGGAGCGATTCGAC 60.389 55.000 10.88 2.76 35.32 4.20
1919 2063 2.017049 GCATTGGTCAGGTACACCATC 58.983 52.381 4.51 0.00 43.66 3.51
1923 2067 1.906574 TGGTCAGGTACACCATCTTCC 59.093 52.381 0.38 0.00 39.11 3.46
1924 2068 2.188817 GGTCAGGTACACCATCTTCCT 58.811 52.381 0.38 0.00 38.89 3.36
2013 2157 1.235696 GAGCCAGAGGGAGGGAGAT 59.764 63.158 0.00 0.00 35.59 2.75
2016 2160 1.511747 AGCCAGAGGGAGGGAGATATT 59.488 52.381 0.00 0.00 35.59 1.28
2021 2165 5.338789 GCCAGAGGGAGGGAGATATTATTTC 60.339 48.000 0.00 0.00 35.59 2.17
2067 2211 1.562008 TGGGATTGGGCTATCGACAAA 59.438 47.619 0.00 0.00 0.00 2.83
2103 2247 7.509141 AAGTGAACACAACATGACATGATTA 57.491 32.000 22.19 0.00 0.00 1.75
2104 2248 7.137490 AGTGAACACAACATGACATGATTAG 57.863 36.000 22.19 10.90 0.00 1.73
2141 2359 7.075851 TGCCTAGTTACTCTAGAGCACTATA 57.924 40.000 23.41 14.70 46.53 1.31
2181 2399 5.645497 GCAAAGATGTATTGTTCTCCTCTGT 59.355 40.000 0.00 0.00 0.00 3.41
2190 2408 4.060038 TGTTCTCCTCTGTTGAAGTGTC 57.940 45.455 0.00 0.00 0.00 3.67
2208 2426 2.293170 GTCTGCCCTCCTTAGAATTGC 58.707 52.381 0.00 0.00 0.00 3.56
2227 2445 1.808411 CCGTGCCTTATCAGTTGTGT 58.192 50.000 0.00 0.00 0.00 3.72
2257 2475 4.925054 GCTTTGCTAATGTGATTTTGCTCA 59.075 37.500 0.00 0.00 0.00 4.26
2265 2483 2.224018 TGTGATTTTGCTCAACTTGCCC 60.224 45.455 0.00 0.00 0.00 5.36
2281 2500 3.271055 TGCCCGGTATCTTTTCTTACC 57.729 47.619 0.00 0.00 35.52 2.85
2321 2540 3.670627 GCATGAAACCGTTCTTCATCACC 60.671 47.826 0.00 0.00 40.69 4.02
2346 2565 3.695830 TTGATACCACTTGAGGGACAC 57.304 47.619 0.00 0.00 0.00 3.67
2392 2611 8.721019 AAGGCACAATGTAAATCCATAATTTG 57.279 30.769 0.00 0.00 38.08 2.32
2407 2626 8.483307 TCCATAATTTGTACTTTAGTTCGGTC 57.517 34.615 0.00 0.00 0.00 4.79
2455 2674 6.324770 GGGATGACCATTTTTCCATAACAGAT 59.675 38.462 0.00 0.00 39.85 2.90
2477 2696 6.823689 AGATAAGCAAATGTACCAGGTTACAG 59.176 38.462 0.00 0.00 0.00 2.74
2478 2697 4.367039 AGCAAATGTACCAGGTTACAGT 57.633 40.909 0.00 0.00 0.00 3.55
2542 2840 9.128404 CTTTAAAAAGGTTACAAACTACTCCCT 57.872 33.333 0.00 0.00 32.40 4.20
2543 2841 8.681486 TTAAAAAGGTTACAAACTACTCCCTC 57.319 34.615 0.00 0.00 0.00 4.30
2544 2842 6.511017 AAAAGGTTACAAACTACTCCCTCT 57.489 37.500 0.00 0.00 0.00 3.69
2545 2843 5.485209 AAGGTTACAAACTACTCCCTCTG 57.515 43.478 0.00 0.00 0.00 3.35
2546 2844 4.490706 AGGTTACAAACTACTCCCTCTGT 58.509 43.478 0.00 0.00 0.00 3.41
2547 2845 5.648247 AGGTTACAAACTACTCCCTCTGTA 58.352 41.667 0.00 0.00 0.00 2.74
2548 2846 6.080009 AGGTTACAAACTACTCCCTCTGTAA 58.920 40.000 0.00 0.00 0.00 2.41
2549 2847 6.556116 AGGTTACAAACTACTCCCTCTGTAAA 59.444 38.462 0.00 0.00 32.68 2.01
2550 2848 6.648310 GGTTACAAACTACTCCCTCTGTAAAC 59.352 42.308 0.00 0.00 32.68 2.01
2551 2849 7.440198 GTTACAAACTACTCCCTCTGTAAACT 58.560 38.462 0.00 0.00 32.68 2.66
2552 2850 8.579863 GTTACAAACTACTCCCTCTGTAAACTA 58.420 37.037 0.00 0.00 32.68 2.24
2553 2851 7.607615 ACAAACTACTCCCTCTGTAAACTAA 57.392 36.000 0.00 0.00 0.00 2.24
2554 2852 8.203681 ACAAACTACTCCCTCTGTAAACTAAT 57.796 34.615 0.00 0.00 0.00 1.73
2555 2853 9.317827 ACAAACTACTCCCTCTGTAAACTAATA 57.682 33.333 0.00 0.00 0.00 0.98
2603 2901 4.031611 GAGGGAGTACCATAGAAACCAGT 58.968 47.826 0.00 0.00 43.89 4.00
2605 2903 5.596763 AGGGAGTACCATAGAAACCAGTTA 58.403 41.667 0.00 0.00 43.89 2.24
2617 2915 6.566197 AGAAACCAGTTAAAGAATCAGCTG 57.434 37.500 7.63 7.63 0.00 4.24
2623 2921 1.755179 TAAAGAATCAGCTGGCCTGC 58.245 50.000 25.96 25.96 41.50 4.85
2630 2928 1.194121 TCAGCTGGCCTGCAAGTAGA 61.194 55.000 32.96 19.67 41.50 2.59
2632 2930 1.139654 CAGCTGGCCTGCAAGTAGATA 59.860 52.381 32.96 0.00 34.21 1.98
2639 2937 3.181496 GGCCTGCAAGTAGATAAAGCAAC 60.181 47.826 0.00 0.00 34.45 4.17
2646 2944 7.362662 TGCAAGTAGATAAAGCAACTGAAAAG 58.637 34.615 0.00 0.00 31.42 2.27
2647 2945 6.306596 GCAAGTAGATAAAGCAACTGAAAAGC 59.693 38.462 0.00 0.00 0.00 3.51
2648 2946 6.502136 AGTAGATAAAGCAACTGAAAAGCC 57.498 37.500 0.00 0.00 0.00 4.35
2649 2947 6.003950 AGTAGATAAAGCAACTGAAAAGCCA 58.996 36.000 0.00 0.00 0.00 4.75
2650 2948 5.126396 AGATAAAGCAACTGAAAAGCCAC 57.874 39.130 0.00 0.00 0.00 5.01
2651 2949 4.584325 AGATAAAGCAACTGAAAAGCCACA 59.416 37.500 0.00 0.00 0.00 4.17
2655 2953 3.524541 AGCAACTGAAAAGCCACAAAAG 58.475 40.909 0.00 0.00 0.00 2.27
2656 2954 3.055891 AGCAACTGAAAAGCCACAAAAGT 60.056 39.130 0.00 0.00 0.00 2.66
2657 2955 4.159506 AGCAACTGAAAAGCCACAAAAGTA 59.840 37.500 0.00 0.00 0.00 2.24
2658 2956 4.504097 GCAACTGAAAAGCCACAAAAGTAG 59.496 41.667 0.00 0.00 0.00 2.57
2659 2957 5.650543 CAACTGAAAAGCCACAAAAGTAGT 58.349 37.500 0.00 0.00 0.00 2.73
2660 2958 6.679392 GCAACTGAAAAGCCACAAAAGTAGTA 60.679 38.462 0.00 0.00 0.00 1.82
2663 2961 8.007405 ACTGAAAAGCCACAAAAGTAGTAAAT 57.993 30.769 0.00 0.00 0.00 1.40
2664 2962 8.135529 ACTGAAAAGCCACAAAAGTAGTAAATC 58.864 33.333 0.00 0.00 0.00 2.17
2667 2965 6.481954 AAGCCACAAAAGTAGTAAATCTCG 57.518 37.500 0.00 0.00 0.00 4.04
2677 2975 9.601217 AAAAGTAGTAAATCTCGCTACAATCAT 57.399 29.630 0.00 0.00 37.97 2.45
2695 2993 4.694760 TCATGGAGGATTACACTGATGG 57.305 45.455 0.00 0.00 0.00 3.51
2699 2997 4.620723 TGGAGGATTACACTGATGGTAGT 58.379 43.478 0.00 0.00 0.00 2.73
2721 3019 2.359531 GTCCTCTATCTTCCACTGTCCG 59.640 54.545 0.00 0.00 0.00 4.79
2742 3041 3.483574 CGCACTACATTTTAGAAGCCACG 60.484 47.826 0.00 0.00 0.00 4.94
2854 3153 9.961266 GAACCTTGTTTTTGTTGTAAATGTTAC 57.039 29.630 0.00 0.00 0.00 2.50
3141 3440 1.672881 GGGCTCACTGGATTTCATTCG 59.327 52.381 0.00 0.00 0.00 3.34
3229 3529 6.542574 TTCAACCATGAATGCAACATTTTC 57.457 33.333 6.96 0.00 40.59 2.29
3242 3542 5.293079 TGCAACATTTTCTTGCTTGTTTACC 59.707 36.000 4.87 0.00 43.76 2.85
3243 3543 5.293079 GCAACATTTTCTTGCTTGTTTACCA 59.707 36.000 0.00 0.00 40.79 3.25
3244 3544 6.509997 GCAACATTTTCTTGCTTGTTTACCAG 60.510 38.462 0.00 0.00 40.79 4.00
3371 3675 1.734465 GACAGGCTGGAAAATCTCACG 59.266 52.381 20.34 0.00 0.00 4.35
3413 3880 9.301897 AGCAGTTAATTTAGTGGATCTTCTTTT 57.698 29.630 1.75 0.00 0.00 2.27
3471 3938 3.877735 GCACCTAAATCCAATGACTGGGT 60.878 47.826 0.00 0.00 46.44 4.51
3473 3940 3.591527 ACCTAAATCCAATGACTGGGTGA 59.408 43.478 0.00 0.00 46.44 4.02
3578 4045 7.969690 ATTTATCTCTCCAGTCATCCGATAT 57.030 36.000 0.00 0.00 0.00 1.63
3585 4052 0.676184 AGTCATCCGATATGCACGCT 59.324 50.000 0.00 0.00 0.00 5.07
3651 4118 1.636003 CCTTCCCCTTTAGCTGTTCCT 59.364 52.381 0.00 0.00 0.00 3.36
3676 4143 5.551760 GCATATGCACCTACACATAATCC 57.448 43.478 22.84 0.00 41.59 3.01
3682 4149 3.113322 CACCTACACATAATCCGACACG 58.887 50.000 0.00 0.00 0.00 4.49
3683 4150 2.756760 ACCTACACATAATCCGACACGT 59.243 45.455 0.00 0.00 0.00 4.49
3684 4151 3.194116 ACCTACACATAATCCGACACGTT 59.806 43.478 0.00 0.00 0.00 3.99
3685 4152 4.178540 CCTACACATAATCCGACACGTTT 58.821 43.478 0.00 0.00 0.00 3.60
3686 4153 4.628333 CCTACACATAATCCGACACGTTTT 59.372 41.667 0.00 0.00 0.00 2.43
3703 4170 8.384526 ACACGTTTTGTTTTTAATAGTCACAC 57.615 30.769 0.00 0.00 33.09 3.82
3704 4171 8.021973 ACACGTTTTGTTTTTAATAGTCACACA 58.978 29.630 0.00 0.00 33.09 3.72
3705 4172 8.520258 CACGTTTTGTTTTTAATAGTCACACAG 58.480 33.333 0.00 0.00 0.00 3.66
3706 4173 8.238631 ACGTTTTGTTTTTAATAGTCACACAGT 58.761 29.630 0.00 0.00 0.00 3.55
3707 4174 8.730427 CGTTTTGTTTTTAATAGTCACACAGTC 58.270 33.333 0.00 0.00 0.00 3.51
3708 4175 9.562583 GTTTTGTTTTTAATAGTCACACAGTCA 57.437 29.630 0.00 0.00 0.00 3.41
3709 4176 9.562583 TTTTGTTTTTAATAGTCACACAGTCAC 57.437 29.630 0.00 0.00 0.00 3.67
3710 4177 7.851387 TGTTTTTAATAGTCACACAGTCACA 57.149 32.000 0.00 0.00 0.00 3.58
3711 4178 7.690228 TGTTTTTAATAGTCACACAGTCACAC 58.310 34.615 0.00 0.00 0.00 3.82
3712 4179 6.519353 TTTTAATAGTCACACAGTCACACG 57.481 37.500 0.00 0.00 0.00 4.49
3713 4180 2.065993 ATAGTCACACAGTCACACGC 57.934 50.000 0.00 0.00 0.00 5.34
3715 4182 1.029681 AGTCACACAGTCACACGCTA 58.970 50.000 0.00 0.00 0.00 4.26
3719 4186 3.985279 GTCACACAGTCACACGCTATTTA 59.015 43.478 0.00 0.00 0.00 1.40
3720 4187 4.625742 GTCACACAGTCACACGCTATTTAT 59.374 41.667 0.00 0.00 0.00 1.40
3721 4188 4.862574 TCACACAGTCACACGCTATTTATC 59.137 41.667 0.00 0.00 0.00 1.75
3722 4189 3.857665 ACACAGTCACACGCTATTTATCG 59.142 43.478 0.00 0.00 0.00 2.92
3730 4206 7.650504 AGTCACACGCTATTTATCGCTTTATTA 59.349 33.333 0.00 0.00 0.00 0.98
3735 4211 6.367969 ACGCTATTTATCGCTTTATTAGGGTG 59.632 38.462 0.00 0.00 37.99 4.61
3738 4214 5.744666 TTTATCGCTTTATTAGGGTGCAC 57.255 39.130 8.80 8.80 37.99 4.57
3747 4223 2.163818 TTAGGGTGCACGACTCAAAG 57.836 50.000 14.93 0.00 0.00 2.77
3750 4226 0.531974 GGGTGCACGACTCAAAGACA 60.532 55.000 11.45 0.00 0.00 3.41
3760 4236 4.058124 CGACTCAAAGACAACCTCATCAA 58.942 43.478 0.00 0.00 0.00 2.57
3763 4239 6.368791 CGACTCAAAGACAACCTCATCAATTA 59.631 38.462 0.00 0.00 0.00 1.40
3772 4248 8.478877 AGACAACCTCATCAATTACTACCTAAG 58.521 37.037 0.00 0.00 0.00 2.18
3789 4273 6.182507 ACCTAAGTATGACCAAAGTGAACA 57.817 37.500 0.00 0.00 0.00 3.18
3855 4339 4.321230 CCTTGACTAATCCAACCAACTTGC 60.321 45.833 0.00 0.00 0.00 4.01
3859 4343 4.151883 ACTAATCCAACCAACTTGCACAT 58.848 39.130 0.00 0.00 0.00 3.21
3904 4389 7.882271 ACTTCTAAGAAATCCATATGCCTCATC 59.118 37.037 0.00 0.00 0.00 2.92
3938 4423 6.331061 ACGATGAGACCTTTATTCTGTGTAC 58.669 40.000 0.00 0.00 0.00 2.90
3978 4470 2.827921 AGATCATGGCCAAAGTCCAAAC 59.172 45.455 10.96 0.00 37.13 2.93
3979 4471 2.380064 TCATGGCCAAAGTCCAAACT 57.620 45.000 10.96 0.00 37.13 2.66
3980 4472 2.238521 TCATGGCCAAAGTCCAAACTC 58.761 47.619 10.96 0.00 37.13 3.01
3981 4473 1.273327 CATGGCCAAAGTCCAAACTCC 59.727 52.381 10.96 0.00 37.13 3.85
3982 4474 0.260230 TGGCCAAAGTCCAAACTCCA 59.740 50.000 0.61 0.00 33.48 3.86
3983 4475 1.342474 TGGCCAAAGTCCAAACTCCAA 60.342 47.619 0.61 0.00 33.48 3.53
3984 4476 1.068588 GGCCAAAGTCCAAACTCCAAC 59.931 52.381 0.00 0.00 33.48 3.77
3993 4485 3.189287 GTCCAAACTCCAACTACATGCAG 59.811 47.826 0.00 0.00 0.00 4.41
4091 4583 4.219288 ACAGTTGAATTTCTCCTCCATTGC 59.781 41.667 0.00 0.00 0.00 3.56
4092 4584 4.219070 CAGTTGAATTTCTCCTCCATTGCA 59.781 41.667 0.00 0.00 0.00 4.08
4094 4586 5.305128 AGTTGAATTTCTCCTCCATTGCAAA 59.695 36.000 1.71 0.00 0.00 3.68
4122 4614 5.507482 GCTATGATGATAATCATGCATGGCC 60.507 44.000 25.97 11.30 39.65 5.36
4129 4621 5.186215 TGATAATCATGCATGGCCCTAATTG 59.814 40.000 25.97 0.00 0.00 2.32
4152 4644 4.997395 GTGTGAATTCTAACTCTTCAGCCA 59.003 41.667 7.05 0.00 30.03 4.75
4210 4702 9.912634 TGTTAGCAAGAGGAAAAATGAAATTAG 57.087 29.630 0.00 0.00 33.67 1.73
4238 4730 5.880332 GGTTGGTCTAGAAACTTGATGCATA 59.120 40.000 0.00 0.00 0.00 3.14
4308 4838 2.863809 AGCAAGTGAAACGGGAAGAAT 58.136 42.857 0.00 0.00 45.86 2.40
4310 4840 4.589908 AGCAAGTGAAACGGGAAGAATAT 58.410 39.130 0.00 0.00 45.86 1.28
4318 4848 6.817140 GTGAAACGGGAAGAATATAAGTGTCT 59.183 38.462 0.00 0.00 0.00 3.41
4319 4849 7.010275 GTGAAACGGGAAGAATATAAGTGTCTC 59.990 40.741 0.00 0.00 0.00 3.36
4327 4857 7.419057 GGAAGAATATAAGTGTCTCCCATCACA 60.419 40.741 0.00 0.00 37.07 3.58
4342 4872 6.177610 TCCCATCACATTTAGTTTGACCTAC 58.822 40.000 0.00 0.00 0.00 3.18
4367 4897 5.975410 TGAATTTTAAAGTTTGGTTGGCG 57.025 34.783 0.00 0.00 0.00 5.69
4399 4929 4.083271 AGAGGAAAAGATTTGCTTGCGTAC 60.083 41.667 0.00 0.00 36.80 3.67
4400 4930 3.057526 AGGAAAAGATTTGCTTGCGTACC 60.058 43.478 0.00 0.00 36.80 3.34
4442 4975 2.076863 CATTCGGGAAAGTGTCTGTCC 58.923 52.381 0.00 0.00 37.16 4.02
4452 4985 1.140816 GTGTCTGTCCGCAAAGAGAC 58.859 55.000 5.86 5.86 39.39 3.36
4460 4993 2.168728 GTCCGCAAAGAGACTAAGGGAT 59.831 50.000 0.00 0.00 0.00 3.85
4461 4994 2.838202 TCCGCAAAGAGACTAAGGGATT 59.162 45.455 0.00 0.00 0.00 3.01
4462 4995 3.263425 TCCGCAAAGAGACTAAGGGATTT 59.737 43.478 0.00 0.00 0.00 2.17
4491 5025 9.480053 TTTATTTATAGCGCTTAATACGAGGTT 57.520 29.630 18.68 0.00 0.00 3.50
4498 5032 5.290400 AGCGCTTAATACGAGGTTAGAAAAC 59.710 40.000 2.64 0.00 34.66 2.43
4503 5037 7.201617 GCTTAATACGAGGTTAGAAAACTGCAT 60.202 37.037 0.00 0.00 35.81 3.96
4510 5044 3.005791 GGTTAGAAAACTGCATGCCAAGT 59.994 43.478 16.68 10.26 35.81 3.16
4514 5048 3.503748 AGAAAACTGCATGCCAAGTAGTC 59.496 43.478 16.68 12.80 30.46 2.59
4520 5054 4.039730 ACTGCATGCCAAGTAGTCCTATAG 59.960 45.833 16.68 2.67 0.00 1.31
4530 5064 7.715686 GCCAAGTAGTCCTATAGTAGCAAAAAT 59.284 37.037 0.00 0.00 0.00 1.82
4545 5079 7.975616 AGTAGCAAAAATAATCACAAATCGCAT 59.024 29.630 0.00 0.00 0.00 4.73
4554 5088 8.939201 ATAATCACAAATCGCATATAGAGGAG 57.061 34.615 0.00 0.00 0.00 3.69
4583 5135 0.033504 TTGGACGAGCAGGTGTTCTC 59.966 55.000 0.00 0.00 0.00 2.87
4591 5143 0.737219 GCAGGTGTTCTCCATCATGC 59.263 55.000 0.00 0.00 0.00 4.06
4628 5183 7.432869 TGTGATGAACTTTAAAGATTGGTTGG 58.567 34.615 21.92 0.00 0.00 3.77
4648 5208 1.762708 CACAAGTGGTGGTGGAAAGT 58.237 50.000 0.00 0.00 44.04 2.66
4698 5258 4.079253 TGGTGGAGCATTCTAGGAAAAAC 58.921 43.478 0.00 0.00 0.00 2.43
4699 5259 4.202567 TGGTGGAGCATTCTAGGAAAAACT 60.203 41.667 0.00 0.00 0.00 2.66
4700 5260 4.767409 GGTGGAGCATTCTAGGAAAAACTT 59.233 41.667 0.00 0.00 0.00 2.66
4724 5284 0.473694 TGTCAGCCAAGAGAAGGGGA 60.474 55.000 0.00 0.00 0.00 4.81
4726 5286 0.911525 TCAGCCAAGAGAAGGGGAGG 60.912 60.000 0.00 0.00 0.00 4.30
4738 5298 9.105844 CAAGAGAAGGGGAGGATATTCTATTTA 57.894 37.037 0.00 0.00 32.50 1.40
4790 5455 2.036958 ATATTGCACGCTAAGCACCA 57.963 45.000 0.00 0.00 42.54 4.17
4791 5456 2.036958 TATTGCACGCTAAGCACCAT 57.963 45.000 0.00 0.00 42.54 3.55
4792 5457 2.036958 ATTGCACGCTAAGCACCATA 57.963 45.000 0.00 0.00 42.54 2.74
4793 5458 2.036958 TTGCACGCTAAGCACCATAT 57.963 45.000 0.00 0.00 42.54 1.78
4794 5459 2.900716 TGCACGCTAAGCACCATATA 57.099 45.000 0.00 0.00 37.02 0.86
4795 5460 3.186702 TGCACGCTAAGCACCATATAA 57.813 42.857 0.00 0.00 37.02 0.98
4796 5461 3.130633 TGCACGCTAAGCACCATATAAG 58.869 45.455 0.00 0.00 37.02 1.73
4797 5462 3.181470 TGCACGCTAAGCACCATATAAGA 60.181 43.478 0.00 0.00 37.02 2.10
4798 5463 3.807622 GCACGCTAAGCACCATATAAGAA 59.192 43.478 0.00 0.00 0.00 2.52
4799 5464 4.272504 GCACGCTAAGCACCATATAAGAAA 59.727 41.667 0.00 0.00 0.00 2.52
4800 5465 5.220777 GCACGCTAAGCACCATATAAGAAAA 60.221 40.000 0.00 0.00 0.00 2.29
4801 5466 6.676943 GCACGCTAAGCACCATATAAGAAAAA 60.677 38.462 0.00 0.00 0.00 1.94
4802 5467 6.907212 CACGCTAAGCACCATATAAGAAAAAG 59.093 38.462 0.00 0.00 0.00 2.27
4803 5468 6.598064 ACGCTAAGCACCATATAAGAAAAAGT 59.402 34.615 0.00 0.00 0.00 2.66
4851 5518 4.415881 TGTACTGGCAGAGAAAGACAAA 57.584 40.909 23.66 0.00 0.00 2.83
4854 5521 2.092429 ACTGGCAGAGAAAGACAAACCA 60.092 45.455 23.66 0.00 0.00 3.67
4857 5524 2.687935 GGCAGAGAAAGACAAACCACAA 59.312 45.455 0.00 0.00 0.00 3.33
4862 5529 4.949856 AGAGAAAGACAAACCACAACATGT 59.050 37.500 0.00 0.00 0.00 3.21
4868 5535 4.702612 AGACAAACCACAACATGTACACAA 59.297 37.500 0.00 0.00 0.00 3.33
4869 5536 5.184096 AGACAAACCACAACATGTACACAAA 59.816 36.000 0.00 0.00 0.00 2.83
4870 5537 5.971763 ACAAACCACAACATGTACACAAAT 58.028 33.333 0.00 0.00 0.00 2.32
4871 5538 6.402222 ACAAACCACAACATGTACACAAATT 58.598 32.000 0.00 0.00 0.00 1.82
4872 5539 7.548097 ACAAACCACAACATGTACACAAATTA 58.452 30.769 0.00 0.00 0.00 1.40
4876 5543 8.413899 ACCACAACATGTACACAAATTAAAAC 57.586 30.769 0.00 0.00 0.00 2.43
4878 5545 7.306283 CCACAACATGTACACAAATTAAAACCG 60.306 37.037 0.00 0.00 0.00 4.44
4879 5546 7.221067 CACAACATGTACACAAATTAAAACCGT 59.779 33.333 0.00 0.00 0.00 4.83
4904 5591 1.594194 GCCATGGTTTGTGCCATCGA 61.594 55.000 14.67 0.00 45.47 3.59
4909 5596 2.234143 TGGTTTGTGCCATCGATTTGA 58.766 42.857 0.00 0.00 32.81 2.69
4910 5597 2.824936 TGGTTTGTGCCATCGATTTGAT 59.175 40.909 0.00 0.00 38.01 2.57
4925 5612 5.689068 TCGATTTGATGACTGAAGATCGATG 59.311 40.000 0.54 0.00 38.96 3.84
4937 5624 5.088068 TGAAGATCGATGCAACAAAAATCG 58.912 37.500 0.54 0.00 43.47 3.34
4947 5634 3.612423 GCAACAAAAATCGAAGGGTATGC 59.388 43.478 0.00 0.00 0.00 3.14
4953 5640 4.602340 AAATCGAAGGGTATGCGACTAT 57.398 40.909 0.00 0.00 36.83 2.12
4961 5648 5.455056 AGGGTATGCGACTATCACTAAAG 57.545 43.478 0.00 0.00 0.00 1.85
4964 5651 5.221382 GGGTATGCGACTATCACTAAAGGAA 60.221 44.000 0.00 0.00 0.00 3.36
4992 5679 8.816640 ATATACTTTTTGTCACAAAAGCTTGG 57.183 30.769 15.18 7.77 39.05 3.61
4999 5686 3.069872 TGTCACAAAAGCTTGGCATCAAT 59.930 39.130 0.00 0.00 36.82 2.57
5008 5695 2.818432 GCTTGGCATCAATCCTAGGATG 59.182 50.000 25.20 17.77 42.92 3.51
5010 5697 3.777106 TGGCATCAATCCTAGGATGTC 57.223 47.619 25.20 15.82 44.35 3.06
5052 5739 1.909302 CACCCACCTCCACTTATCACT 59.091 52.381 0.00 0.00 0.00 3.41
5072 5759 5.043248 CACTCAAAAGACATTTGGTTGTCC 58.957 41.667 3.51 0.00 46.85 4.02
5075 5763 4.709397 TCAAAAGACATTTGGTTGTCCAGT 59.291 37.500 3.51 0.00 46.85 4.00
5076 5764 4.654091 AAAGACATTTGGTTGTCCAGTG 57.346 40.909 1.19 0.00 45.80 3.66
5209 5898 8.627208 AACAATATGGATAGCTCGATTCATTT 57.373 30.769 0.00 0.00 0.00 2.32
5211 5900 9.155975 ACAATATGGATAGCTCGATTCATTTAC 57.844 33.333 0.00 0.00 0.00 2.01
5262 5951 7.827819 TCTCAGTCAGTAATACGGAAAATTG 57.172 36.000 0.00 0.00 0.00 2.32
5265 5954 6.021596 CAGTCAGTAATACGGAAAATTGTGC 58.978 40.000 0.00 0.00 0.00 4.57
5287 5976 6.306356 GTGCAATTCAACTATGTTAGCTGTTG 59.694 38.462 0.00 0.65 40.53 3.33
5288 5977 6.206438 TGCAATTCAACTATGTTAGCTGTTGA 59.794 34.615 10.13 10.13 44.41 3.18
5289 5978 6.744537 GCAATTCAACTATGTTAGCTGTTGAG 59.255 38.462 12.95 5.77 45.88 3.02
5291 5980 7.986085 ATTCAACTATGTTAGCTGTTGAGTT 57.014 32.000 12.95 6.21 45.88 3.01
5292 5981 7.801716 TTCAACTATGTTAGCTGTTGAGTTT 57.198 32.000 12.95 0.00 45.88 2.66
5391 6367 4.939271 TCTGTTTGTGTACAGTTGATCGA 58.061 39.130 0.00 0.00 44.62 3.59
5444 6420 8.840321 GCTAGTGCAATATCAGGAAAGAATTTA 58.160 33.333 0.00 0.00 37.55 1.40
5457 6433 8.650714 CAGGAAAGAATTTAAAAATGCTGTAGC 58.349 33.333 0.00 0.00 39.27 3.58
5535 6511 4.267349 TCAGGCCACACTTTAGTCTTAC 57.733 45.455 5.01 0.00 0.00 2.34
5582 6558 6.155475 TGGTGGAAAGGAACAAAATTACAG 57.845 37.500 0.00 0.00 0.00 2.74
5584 6560 6.155393 TGGTGGAAAGGAACAAAATTACAGTT 59.845 34.615 0.00 0.00 0.00 3.16
5585 6561 6.478673 GGTGGAAAGGAACAAAATTACAGTTG 59.521 38.462 0.00 0.00 0.00 3.16
5608 6584 6.482524 TGTGTGTCCTCAACTACTAGTAGAT 58.517 40.000 31.93 20.30 36.97 1.98
5644 6620 0.394080 GCTCAAGGCCTCTTCTGCAT 60.394 55.000 5.23 0.00 32.26 3.96
5646 6622 0.694771 TCAAGGCCTCTTCTGCATGT 59.305 50.000 5.23 0.00 0.00 3.21
5687 6663 5.163332 ACAGTGCATGACTCTGATATGATGT 60.163 40.000 19.20 0.00 41.48 3.06
5697 6676 8.239314 TGACTCTGATATGATGTTTTGCTTTTC 58.761 33.333 0.00 0.00 0.00 2.29
5802 6781 1.975407 CCTGTGCAGCAAGGGGAAG 60.975 63.158 13.21 0.00 0.00 3.46
5889 6868 1.144936 GCAGATGGAGGAGGAACCG 59.855 63.158 0.00 0.00 44.74 4.44
5970 6949 3.774959 CTCTCGGCGGCGCAACTAT 62.775 63.158 34.36 0.00 0.00 2.12
5976 6955 1.595382 GCGGCGCAACTATGAGGAT 60.595 57.895 29.21 0.00 0.00 3.24
6024 7003 2.047179 GGTGAGACGGAAGGCACC 60.047 66.667 0.00 0.00 46.78 5.01
6114 7093 3.997400 CTCGAGCTGGGACCGGAGA 62.997 68.421 9.46 0.00 0.00 3.71
6217 7196 2.125106 GGCCGCGGTCTCAAAGAT 60.125 61.111 28.70 0.00 0.00 2.40
6232 7212 7.067737 GGTCTCAAAGATAACTCACTAGTAGCT 59.932 40.741 0.00 0.00 33.75 3.32
6233 7213 7.913297 GTCTCAAAGATAACTCACTAGTAGCTG 59.087 40.741 0.00 0.00 33.75 4.24
6235 7215 8.349568 TCAAAGATAACTCACTAGTAGCTGAA 57.650 34.615 0.00 0.00 33.75 3.02
6236 7216 8.803235 TCAAAGATAACTCACTAGTAGCTGAAA 58.197 33.333 0.00 0.00 33.75 2.69
6295 7277 3.120304 GGGTTCTGCGATTGTTTACTGAC 60.120 47.826 0.00 0.00 0.00 3.51
6315 7297 1.004918 GTGACACACCGGGAGAAGG 60.005 63.158 6.32 0.00 0.00 3.46
6317 7299 1.911766 GACACACCGGGAGAAGGGA 60.912 63.158 6.32 0.00 0.00 4.20
6320 7302 1.305381 ACACCGGGAGAAGGGAGAG 60.305 63.158 6.32 0.00 0.00 3.20
6453 7448 2.921538 TTTTTGCGCCGGTGTTGTCG 62.922 55.000 17.91 4.53 0.00 4.35
6557 7552 6.407202 TCCTTGGAAATGTCTCTAGTTTAGC 58.593 40.000 0.00 0.00 0.00 3.09
6572 7567 7.611770 TCTAGTTTAGCTTGCATCTCAACTTA 58.388 34.615 16.29 7.35 32.29 2.24
6627 7622 8.991026 CATTCTTCTGATGAACAAGGAGATATC 58.009 37.037 7.99 0.00 0.00 1.63
6631 7626 9.339850 CTTCTGATGAACAAGGAGATATCAAAT 57.660 33.333 5.32 0.00 0.00 2.32
6641 7646 8.184192 ACAAGGAGATATCAAATTTAGTTTGCG 58.816 33.333 5.32 0.00 45.45 4.85
6647 7652 8.511321 AGATATCAAATTTAGTTTGCGTGTTGA 58.489 29.630 5.32 0.00 45.45 3.18
6649 7654 5.641709 TCAAATTTAGTTTGCGTGTTGACA 58.358 33.333 0.00 0.00 45.45 3.58
6670 7675 6.028146 ACATCATCTATTTGTTTGCAAGCA 57.972 33.333 12.36 12.36 35.82 3.91
6695 7705 6.036844 AGACGTAAAACTCTTTGTGTTCTTCC 59.963 38.462 0.00 0.00 0.00 3.46
6740 7750 2.027285 AGGTTGGCAGTTGCTTTGTTTT 60.027 40.909 3.88 0.00 41.70 2.43
6803 7827 0.035881 TCTCTGACTGCTGCAAAGGG 59.964 55.000 3.02 1.93 0.00 3.95
6804 7828 1.584380 CTCTGACTGCTGCAAAGGGC 61.584 60.000 3.02 0.00 45.13 5.19
6815 7839 1.956802 CAAAGGGCGGACTTGAACC 59.043 57.895 0.00 0.00 0.00 3.62
6886 7910 1.985622 TCAGGATCCCAGGTCCATTT 58.014 50.000 8.55 0.00 38.25 2.32
6948 7980 3.904136 TGCAGCTTCAAACTTAAGAGC 57.096 42.857 10.09 7.24 0.00 4.09
6966 7998 1.879380 AGCTTTGCGTGCAACTCATAA 59.121 42.857 6.80 0.00 35.46 1.90
7004 8041 9.733219 GTCAGTCCTACTAATCATTTGTACTAC 57.267 37.037 0.00 0.00 0.00 2.73
7005 8042 9.696572 TCAGTCCTACTAATCATTTGTACTACT 57.303 33.333 0.00 0.00 0.00 2.57
7038 8075 0.327924 AAATGACTGCCACGATCCCA 59.672 50.000 0.00 0.00 0.00 4.37
7042 8079 1.040646 GACTGCCACGATCCCAGATA 58.959 55.000 0.00 0.00 0.00 1.98
7083 8123 0.524180 GACGGTCGTCGGATGGTAAC 60.524 60.000 7.77 0.00 44.45 2.50
7092 8132 2.688958 GTCGGATGGTAACTCTACTGCT 59.311 50.000 0.00 0.00 37.61 4.24
7093 8133 3.130693 GTCGGATGGTAACTCTACTGCTT 59.869 47.826 0.00 0.00 37.61 3.91
7094 8134 3.767673 TCGGATGGTAACTCTACTGCTTT 59.232 43.478 0.00 0.00 37.61 3.51
7095 8135 3.865745 CGGATGGTAACTCTACTGCTTTG 59.134 47.826 0.00 0.00 37.61 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.773690 GGGCCATATTACAAGACTTCTAGAAAA 59.226 37.037 4.39 0.00 0.00 2.29
27 29 1.478622 GCATGTTTTGTTGCACGCGT 61.479 50.000 5.58 5.58 38.72 6.01
29 31 2.295692 TGCATGTTTTGTTGCACGC 58.704 47.368 0.00 0.00 43.54 5.34
61 63 7.343357 CAAGGGGAGTACTTTCCAACATAATA 58.657 38.462 15.29 0.00 39.09 0.98
65 67 3.814316 GCAAGGGGAGTACTTTCCAACAT 60.814 47.826 15.29 0.00 39.09 2.71
83 85 2.749621 GAGACACTTATGTTGGGGCAAG 59.250 50.000 0.00 0.00 39.95 4.01
84 86 2.107378 TGAGACACTTATGTTGGGGCAA 59.893 45.455 0.00 0.00 39.95 4.52
85 87 1.702401 TGAGACACTTATGTTGGGGCA 59.298 47.619 0.00 0.00 39.95 5.36
87 89 2.749621 GCTTGAGACACTTATGTTGGGG 59.250 50.000 0.00 0.00 39.95 4.96
89 91 5.934625 ACTAAGCTTGAGACACTTATGTTGG 59.065 40.000 9.86 0.00 39.95 3.77
93 95 7.815068 AGTTGTACTAAGCTTGAGACACTTATG 59.185 37.037 9.86 0.00 0.00 1.90
127 129 7.190920 AGTGTCTCAACTTTGTATTAACTGC 57.809 36.000 0.00 0.00 0.00 4.40
135 137 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
136 138 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
137 139 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
138 140 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
139 141 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
145 253 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
159 267 5.602978 ACATGATTTATTACTCCCTCCGTCT 59.397 40.000 0.00 0.00 0.00 4.18
166 274 7.047891 TGTGTCTCACATGATTTATTACTCCC 58.952 38.462 0.00 0.00 39.62 4.30
172 280 9.671279 TCAGTATTGTGTCTCACATGATTTATT 57.329 29.630 0.00 0.00 44.16 1.40
183 291 9.860898 GCATGTATATATCAGTATTGTGTCTCA 57.139 33.333 0.00 0.00 0.00 3.27
236 345 8.909423 TTTGGAGGGATCCTTTTATTTAATGT 57.091 30.769 12.58 0.00 31.76 2.71
243 352 5.196574 AGTGGATTTGGAGGGATCCTTTTAT 59.803 40.000 12.58 0.00 41.92 1.40
244 353 4.544152 AGTGGATTTGGAGGGATCCTTTTA 59.456 41.667 12.58 0.00 41.92 1.52
278 388 6.073222 TCAGAACCTTTTAATTTCGCTCACTC 60.073 38.462 0.00 0.00 0.00 3.51
280 390 5.997385 TCAGAACCTTTTAATTTCGCTCAC 58.003 37.500 0.00 0.00 0.00 3.51
284 394 6.145371 TGCAAATCAGAACCTTTTAATTTCGC 59.855 34.615 0.00 0.00 0.00 4.70
285 395 7.501515 GTGCAAATCAGAACCTTTTAATTTCG 58.498 34.615 0.00 0.00 0.00 3.46
290 400 5.759506 TCGTGCAAATCAGAACCTTTTAA 57.240 34.783 0.00 0.00 0.00 1.52
297 407 6.524586 CCTCTTTTAATCGTGCAAATCAGAAC 59.475 38.462 0.00 0.00 0.00 3.01
298 408 6.349280 CCCTCTTTTAATCGTGCAAATCAGAA 60.349 38.462 0.00 0.00 0.00 3.02
300 410 5.123820 TCCCTCTTTTAATCGTGCAAATCAG 59.876 40.000 0.00 0.00 0.00 2.90
316 426 7.643123 TGCTATTTTAAGATCCTTCCCTCTTT 58.357 34.615 0.00 0.00 33.83 2.52
319 429 5.471797 GCTGCTATTTTAAGATCCTTCCCTC 59.528 44.000 0.00 0.00 0.00 4.30
323 433 8.408601 TGAAATGCTGCTATTTTAAGATCCTTC 58.591 33.333 0.00 0.00 30.78 3.46
327 437 9.740239 TCATTGAAATGCTGCTATTTTAAGATC 57.260 29.630 0.00 0.00 36.36 2.75
342 452 6.814506 AGGACTAGCATATCATTGAAATGC 57.185 37.500 0.00 0.00 45.02 3.56
354 464 9.209048 TCCATAGTTTTCTAAAGGACTAGCATA 57.791 33.333 0.00 0.00 36.45 3.14
356 466 7.490657 TCCATAGTTTTCTAAAGGACTAGCA 57.509 36.000 0.00 0.00 36.45 3.49
357 467 8.966069 ATTCCATAGTTTTCTAAAGGACTAGC 57.034 34.615 0.00 0.00 39.04 3.42
369 479 9.841880 GGAGTAGTTTTCAATTCCATAGTTTTC 57.158 33.333 0.00 0.00 0.00 2.29
373 483 7.272144 AGGGAGTAGTTTTCAATTCCATAGT 57.728 36.000 0.00 0.00 0.00 2.12
378 488 3.939592 CGGAGGGAGTAGTTTTCAATTCC 59.060 47.826 0.00 0.00 0.00 3.01
379 489 4.576879 ACGGAGGGAGTAGTTTTCAATTC 58.423 43.478 0.00 0.00 0.00 2.17
383 493 3.644738 AGAAACGGAGGGAGTAGTTTTCA 59.355 43.478 0.00 0.00 37.00 2.69
384 494 4.268797 AGAAACGGAGGGAGTAGTTTTC 57.731 45.455 0.00 0.00 37.00 2.29
386 496 5.813513 TTTAGAAACGGAGGGAGTAGTTT 57.186 39.130 0.00 0.00 39.21 2.66
394 504 5.291905 ACTCCATATTTAGAAACGGAGGG 57.708 43.478 15.88 1.78 43.55 4.30
395 505 7.498443 ACTTACTCCATATTTAGAAACGGAGG 58.502 38.462 15.88 6.26 43.55 4.30
396 506 8.414778 AGACTTACTCCATATTTAGAAACGGAG 58.585 37.037 12.26 12.26 44.57 4.63
397 507 8.302515 AGACTTACTCCATATTTAGAAACGGA 57.697 34.615 0.00 0.00 0.00 4.69
398 508 8.943909 AAGACTTACTCCATATTTAGAAACGG 57.056 34.615 0.00 0.00 0.00 4.44
409 519 9.357161 GGAATCTCTAGAAAGACTTACTCCATA 57.643 37.037 0.00 0.00 0.00 2.74
411 521 7.182760 TGGAATCTCTAGAAAGACTTACTCCA 58.817 38.462 0.00 0.00 0.00 3.86
412 522 7.648039 TGGAATCTCTAGAAAGACTTACTCC 57.352 40.000 0.00 0.00 0.00 3.85
414 524 8.527810 CACTTGGAATCTCTAGAAAGACTTACT 58.472 37.037 6.61 0.00 0.00 2.24
415 525 7.762159 CCACTTGGAATCTCTAGAAAGACTTAC 59.238 40.741 6.61 0.00 37.39 2.34
416 526 7.579723 GCCACTTGGAATCTCTAGAAAGACTTA 60.580 40.741 0.00 0.00 37.39 2.24
417 527 6.706295 CCACTTGGAATCTCTAGAAAGACTT 58.294 40.000 6.61 0.00 37.39 3.01
419 529 4.873259 GCCACTTGGAATCTCTAGAAAGAC 59.127 45.833 0.00 0.00 37.39 3.01
420 530 4.780021 AGCCACTTGGAATCTCTAGAAAGA 59.220 41.667 0.00 0.00 37.39 2.52
421 531 5.096443 AGCCACTTGGAATCTCTAGAAAG 57.904 43.478 0.00 0.00 37.39 2.62
422 532 5.483937 TGTAGCCACTTGGAATCTCTAGAAA 59.516 40.000 0.00 0.00 37.39 2.52
424 534 4.610333 TGTAGCCACTTGGAATCTCTAGA 58.390 43.478 0.00 0.00 37.39 2.43
426 536 5.009710 CGTATGTAGCCACTTGGAATCTCTA 59.990 44.000 0.00 0.00 37.39 2.43
430 540 3.131396 CCGTATGTAGCCACTTGGAATC 58.869 50.000 0.00 0.00 37.39 2.52
431 541 2.769663 TCCGTATGTAGCCACTTGGAAT 59.230 45.455 0.00 0.00 37.39 3.01
434 544 2.277084 GTTCCGTATGTAGCCACTTGG 58.723 52.381 0.00 0.00 38.53 3.61
435 545 2.967362 TGTTCCGTATGTAGCCACTTG 58.033 47.619 0.00 0.00 0.00 3.16
436 546 3.688694 TTGTTCCGTATGTAGCCACTT 57.311 42.857 0.00 0.00 0.00 3.16
438 548 4.393680 TCATTTTGTTCCGTATGTAGCCAC 59.606 41.667 0.00 0.00 0.00 5.01
439 549 4.580868 TCATTTTGTTCCGTATGTAGCCA 58.419 39.130 0.00 0.00 0.00 4.75
440 550 4.634443 ACTCATTTTGTTCCGTATGTAGCC 59.366 41.667 0.00 0.00 0.00 3.93
442 552 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
444 554 6.128007 GGATTCACTCATTTTGTTCCGTATGT 60.128 38.462 0.00 0.00 0.00 2.29
447 557 5.309638 TGGATTCACTCATTTTGTTCCGTA 58.690 37.500 0.00 0.00 0.00 4.02
448 558 4.141287 TGGATTCACTCATTTTGTTCCGT 58.859 39.130 0.00 0.00 0.00 4.69
449 559 4.764679 TGGATTCACTCATTTTGTTCCG 57.235 40.909 0.00 0.00 0.00 4.30
450 560 6.690530 TGATTGGATTCACTCATTTTGTTCC 58.309 36.000 0.00 0.00 29.31 3.62
451 561 9.294030 GTATGATTGGATTCACTCATTTTGTTC 57.706 33.333 11.76 0.00 39.33 3.18
453 563 7.415541 CCGTATGATTGGATTCACTCATTTTGT 60.416 37.037 11.76 0.00 39.33 2.83
458 568 5.551305 TCCGTATGATTGGATTCACTCAT 57.449 39.130 11.30 11.30 43.04 2.90
460 570 5.116180 TGTTCCGTATGATTGGATTCACTC 58.884 41.667 0.00 0.00 33.42 3.51
461 571 5.097742 TGTTCCGTATGATTGGATTCACT 57.902 39.130 0.00 0.00 33.42 3.41
462 572 5.811399 TTGTTCCGTATGATTGGATTCAC 57.189 39.130 0.00 0.00 33.42 3.18
464 574 9.796120 TTTAATTTGTTCCGTATGATTGGATTC 57.204 29.630 0.00 0.00 33.42 2.52
465 575 9.581099 GTTTAATTTGTTCCGTATGATTGGATT 57.419 29.630 0.00 0.00 33.42 3.01
466 576 8.744652 TGTTTAATTTGTTCCGTATGATTGGAT 58.255 29.630 0.00 0.00 33.42 3.41
467 577 8.112016 TGTTTAATTTGTTCCGTATGATTGGA 57.888 30.769 0.00 0.00 0.00 3.53
468 578 8.749841 TTGTTTAATTTGTTCCGTATGATTGG 57.250 30.769 0.00 0.00 0.00 3.16
472 582 9.400638 GACAATTGTTTAATTTGTTCCGTATGA 57.599 29.630 13.36 0.00 34.34 2.15
473 583 9.186323 TGACAATTGTTTAATTTGTTCCGTATG 57.814 29.630 13.36 0.00 34.34 2.39
474 584 9.187455 GTGACAATTGTTTAATTTGTTCCGTAT 57.813 29.630 13.36 0.00 34.34 3.06
475 585 8.188799 TGTGACAATTGTTTAATTTGTTCCGTA 58.811 29.630 13.36 0.00 34.34 4.02
477 587 7.456684 TGTGACAATTGTTTAATTTGTTCCG 57.543 32.000 13.36 0.00 34.34 4.30
610 727 2.163390 CGACAGCCTCATGAGTGCG 61.163 63.158 21.11 18.81 32.37 5.34
622 739 1.204312 GCTTCACCGAAACGACAGC 59.796 57.895 0.00 0.00 0.00 4.40
623 740 1.566018 GGGCTTCACCGAAACGACAG 61.566 60.000 0.00 0.00 40.62 3.51
625 742 3.250986 GGGCTTCACCGAAACGAC 58.749 61.111 0.00 0.00 40.62 4.34
748 865 2.884639 CCGCCTTTTTCCTTTCTCAGAA 59.115 45.455 0.00 0.00 0.00 3.02
840 960 2.060980 CGAGGAACTGGGAGAGGGG 61.061 68.421 0.00 0.00 41.55 4.79
1106 1238 3.376546 GGCAGAAATCATCAGACCAAGAC 59.623 47.826 0.00 0.00 0.00 3.01
1114 1246 3.012518 AGAAACGGGCAGAAATCATCAG 58.987 45.455 0.00 0.00 0.00 2.90
1116 1248 4.156739 AGAAAGAAACGGGCAGAAATCATC 59.843 41.667 0.00 0.00 0.00 2.92
1118 1250 3.486383 AGAAAGAAACGGGCAGAAATCA 58.514 40.909 0.00 0.00 0.00 2.57
1119 1251 3.424962 CGAGAAAGAAACGGGCAGAAATC 60.425 47.826 0.00 0.00 0.00 2.17
1131 1272 3.073946 AGTGGAATTCCCCGAGAAAGAAA 59.926 43.478 21.90 0.00 38.21 2.52
1140 1281 1.144057 CGAGGAGTGGAATTCCCCG 59.856 63.158 21.90 11.10 45.22 5.73
1161 1302 7.062022 GCACTAAATAAAACCGCCGAAATAAAA 59.938 33.333 0.00 0.00 0.00 1.52
1173 1314 7.153217 ACACATACAGGCACTAAATAAAACC 57.847 36.000 0.00 0.00 36.02 3.27
1240 1381 2.159531 GCATCAAATCACACTAAGCGCA 60.160 45.455 11.47 0.00 0.00 6.09
1324 1465 2.550830 GGAAGAACCTCTGCAGACAA 57.449 50.000 13.74 0.00 35.41 3.18
1381 1522 2.049063 GCAACCGAGACGAGCAGT 60.049 61.111 0.00 0.00 0.00 4.40
1447 1588 2.667348 GGAGAACCGGTGGAGAAGA 58.333 57.895 8.52 0.00 0.00 2.87
1459 1600 1.352156 CTGCGTTGTAGCCGGAGAAC 61.352 60.000 5.05 0.00 45.21 3.01
1495 1636 1.228521 CATGAACCCCACTGCCACA 60.229 57.895 0.00 0.00 0.00 4.17
1532 1673 2.437180 TGCCTGCAGGAATCGCTG 60.437 61.111 37.21 7.51 37.39 5.18
1533 1674 2.124819 CTGCCTGCAGGAATCGCT 60.125 61.111 37.21 0.00 40.17 4.93
1552 1693 4.808077 AATGCTCGCTGATTAACTGATG 57.192 40.909 0.00 0.00 0.00 3.07
1566 1710 1.033746 ATGAGTGCCCCAAATGCTCG 61.034 55.000 0.00 0.00 0.00 5.03
1669 1813 4.889856 TCCGGTGGATGCGATGCG 62.890 66.667 0.00 0.00 0.00 4.73
1759 1903 2.949447 AGCATCCCATTAACCATCACC 58.051 47.619 0.00 0.00 0.00 4.02
1834 1978 4.152223 CAGTTGTTGCATATCGAACAGTGA 59.848 41.667 0.00 0.00 33.73 3.41
1873 2017 1.002017 AACCCAGGGGCAATGATGG 59.998 57.895 11.37 0.00 39.32 3.51
1919 2063 3.742433 ACAGAGTTCAGTGTGAGGAAG 57.258 47.619 0.00 0.00 0.00 3.46
1923 2067 7.426410 TCTTTAAGTACAGAGTTCAGTGTGAG 58.574 38.462 0.00 0.00 0.00 3.51
1924 2068 7.342769 TCTTTAAGTACAGAGTTCAGTGTGA 57.657 36.000 0.00 0.00 0.00 3.58
2021 2165 6.319048 ACCCTATCTGATTAAGCCCATATG 57.681 41.667 0.00 0.00 0.00 1.78
2067 2211 6.097554 TGTTGTGTTCACTTTATCAAATGGGT 59.902 34.615 4.59 0.00 0.00 4.51
2079 2223 6.395426 AATCATGTCATGTTGTGTTCACTT 57.605 33.333 12.54 0.00 0.00 3.16
2080 2224 6.348786 GCTAATCATGTCATGTTGTGTTCACT 60.349 38.462 12.54 0.00 0.00 3.41
2103 2247 2.174210 ACTAGGCACCATGAATCATGCT 59.826 45.455 17.27 11.19 40.20 3.79
2104 2248 2.579873 ACTAGGCACCATGAATCATGC 58.420 47.619 17.27 8.18 40.20 4.06
2113 2257 3.892588 GCTCTAGAGTAACTAGGCACCAT 59.107 47.826 20.75 0.00 46.08 3.55
2119 2263 9.953565 AGAATATAGTGCTCTAGAGTAACTAGG 57.046 37.037 27.15 5.61 46.08 3.02
2141 2359 8.302515 ACATCTTTGCCTCAATTAATCAGAAT 57.697 30.769 0.00 0.00 0.00 2.40
2147 2365 9.807649 GAACAATACATCTTTGCCTCAATTAAT 57.192 29.630 0.00 0.00 0.00 1.40
2181 2399 1.140312 AAGGAGGGCAGACACTTCAA 58.860 50.000 0.00 0.00 0.00 2.69
2190 2408 1.685148 GGCAATTCTAAGGAGGGCAG 58.315 55.000 0.00 0.00 0.00 4.85
2208 2426 1.464608 CACACAACTGATAAGGCACGG 59.535 52.381 0.00 0.00 0.00 4.94
2227 2445 5.664294 ATCACATTAGCAAAGCAATTCCA 57.336 34.783 0.00 0.00 0.00 3.53
2257 2475 3.434940 AGAAAAGATACCGGGCAAGTT 57.565 42.857 6.32 0.00 0.00 2.66
2265 2483 8.767478 TTAAGAACAGGTAAGAAAAGATACCG 57.233 34.615 0.00 0.00 45.08 4.02
2294 2513 5.103290 TGAAGAACGGTTTCATGCTTAAC 57.897 39.130 0.00 0.00 33.72 2.01
2321 2540 4.809426 GTCCCTCAAGTGGTATCAATTACG 59.191 45.833 0.00 0.00 29.38 3.18
2346 2565 7.646130 TGCCTTATAAAAGTTCAAACAGAAACG 59.354 33.333 0.00 0.00 38.13 3.60
2382 2601 7.276218 CGACCGAACTAAAGTACAAATTATGGA 59.724 37.037 0.00 0.00 0.00 3.41
2387 2606 4.152938 GGCGACCGAACTAAAGTACAAATT 59.847 41.667 0.00 0.00 0.00 1.82
2392 2611 2.095059 TCAGGCGACCGAACTAAAGTAC 60.095 50.000 0.00 0.00 0.00 2.73
2398 2617 1.679680 CCTAATCAGGCGACCGAACTA 59.320 52.381 0.00 0.00 34.35 2.24
2455 2674 5.871834 ACTGTAACCTGGTACATTTGCTTA 58.128 37.500 0.00 0.00 38.20 3.09
2566 2864 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
2569 2867 9.584008 CTATGGTACTCCCTCTGTAAACTAATA 57.416 37.037 0.00 0.00 0.00 0.98
2570 2868 8.287350 TCTATGGTACTCCCTCTGTAAACTAAT 58.713 37.037 0.00 0.00 0.00 1.73
2571 2869 7.645942 TCTATGGTACTCCCTCTGTAAACTAA 58.354 38.462 0.00 0.00 0.00 2.24
2572 2870 7.217028 TCTATGGTACTCCCTCTGTAAACTA 57.783 40.000 0.00 0.00 0.00 2.24
2573 2871 6.088541 TCTATGGTACTCCCTCTGTAAACT 57.911 41.667 0.00 0.00 0.00 2.66
2574 2872 6.786967 TTCTATGGTACTCCCTCTGTAAAC 57.213 41.667 0.00 0.00 0.00 2.01
2575 2873 6.155737 GGTTTCTATGGTACTCCCTCTGTAAA 59.844 42.308 0.00 0.00 0.00 2.01
2576 2874 5.659971 GGTTTCTATGGTACTCCCTCTGTAA 59.340 44.000 0.00 0.00 0.00 2.41
2577 2875 5.206587 GGTTTCTATGGTACTCCCTCTGTA 58.793 45.833 0.00 0.00 0.00 2.74
2578 2876 4.031611 GGTTTCTATGGTACTCCCTCTGT 58.968 47.826 0.00 0.00 0.00 3.41
2579 2877 4.030913 TGGTTTCTATGGTACTCCCTCTG 58.969 47.826 0.00 0.00 0.00 3.35
2580 2878 4.264895 ACTGGTTTCTATGGTACTCCCTCT 60.265 45.833 0.00 0.00 0.00 3.69
2581 2879 4.031611 ACTGGTTTCTATGGTACTCCCTC 58.968 47.826 0.00 0.00 0.00 4.30
2582 2880 4.076175 ACTGGTTTCTATGGTACTCCCT 57.924 45.455 0.00 0.00 0.00 4.20
2583 2881 4.838904 AACTGGTTTCTATGGTACTCCC 57.161 45.455 0.00 0.00 0.00 4.30
2584 2882 7.618137 TCTTTAACTGGTTTCTATGGTACTCC 58.382 38.462 0.00 0.00 0.00 3.85
2585 2883 9.668497 ATTCTTTAACTGGTTTCTATGGTACTC 57.332 33.333 0.00 0.00 0.00 2.59
2586 2884 9.668497 GATTCTTTAACTGGTTTCTATGGTACT 57.332 33.333 0.00 0.00 0.00 2.73
2587 2885 9.444600 TGATTCTTTAACTGGTTTCTATGGTAC 57.555 33.333 0.00 0.00 0.00 3.34
2588 2886 9.667107 CTGATTCTTTAACTGGTTTCTATGGTA 57.333 33.333 0.00 0.00 0.00 3.25
2589 2887 7.121315 GCTGATTCTTTAACTGGTTTCTATGGT 59.879 37.037 0.00 0.00 0.00 3.55
2590 2888 7.337942 AGCTGATTCTTTAACTGGTTTCTATGG 59.662 37.037 0.00 0.00 0.00 2.74
2591 2889 8.180267 CAGCTGATTCTTTAACTGGTTTCTATG 58.820 37.037 8.42 0.00 0.00 2.23
2603 2901 2.094675 GCAGGCCAGCTGATTCTTTAA 58.905 47.619 17.39 0.00 0.00 1.52
2605 2903 0.251474 TGCAGGCCAGCTGATTCTTT 60.251 50.000 21.82 0.00 34.99 2.52
2617 2915 2.643551 TGCTTTATCTACTTGCAGGCC 58.356 47.619 0.00 0.00 0.00 5.19
2623 2921 6.803807 GGCTTTTCAGTTGCTTTATCTACTTG 59.196 38.462 0.00 0.00 0.00 3.16
2630 2928 4.935352 TGTGGCTTTTCAGTTGCTTTAT 57.065 36.364 0.00 0.00 0.00 1.40
2632 2930 3.608316 TTGTGGCTTTTCAGTTGCTTT 57.392 38.095 0.00 0.00 0.00 3.51
2639 2937 8.352942 AGATTTACTACTTTTGTGGCTTTTCAG 58.647 33.333 0.00 0.00 33.93 3.02
2646 2944 4.392138 AGCGAGATTTACTACTTTTGTGGC 59.608 41.667 0.00 0.00 33.93 5.01
2647 2945 6.588756 TGTAGCGAGATTTACTACTTTTGTGG 59.411 38.462 0.00 0.00 37.70 4.17
2648 2946 7.576750 TGTAGCGAGATTTACTACTTTTGTG 57.423 36.000 0.00 0.00 37.70 3.33
2649 2947 8.773404 ATTGTAGCGAGATTTACTACTTTTGT 57.227 30.769 0.00 0.00 37.70 2.83
2650 2948 8.869897 TGATTGTAGCGAGATTTACTACTTTTG 58.130 33.333 0.00 0.00 37.70 2.44
2651 2949 8.997621 TGATTGTAGCGAGATTTACTACTTTT 57.002 30.769 0.00 0.00 37.70 2.27
2655 2953 7.145985 TCCATGATTGTAGCGAGATTTACTAC 58.854 38.462 0.00 0.00 37.40 2.73
2656 2954 7.284919 TCCATGATTGTAGCGAGATTTACTA 57.715 36.000 0.00 0.00 0.00 1.82
2657 2955 6.161855 TCCATGATTGTAGCGAGATTTACT 57.838 37.500 0.00 0.00 0.00 2.24
2658 2956 5.406780 CCTCCATGATTGTAGCGAGATTTAC 59.593 44.000 0.00 0.00 0.00 2.01
2659 2957 5.304357 TCCTCCATGATTGTAGCGAGATTTA 59.696 40.000 0.00 0.00 0.00 1.40
2660 2958 4.101585 TCCTCCATGATTGTAGCGAGATTT 59.898 41.667 0.00 0.00 0.00 2.17
2663 2961 2.666317 TCCTCCATGATTGTAGCGAGA 58.334 47.619 0.00 0.00 0.00 4.04
2664 2962 3.674528 ATCCTCCATGATTGTAGCGAG 57.325 47.619 0.00 0.00 0.00 5.03
2667 2965 5.468072 CAGTGTAATCCTCCATGATTGTAGC 59.532 44.000 0.00 0.00 35.77 3.58
2677 2975 4.405680 CACTACCATCAGTGTAATCCTCCA 59.594 45.833 0.00 0.00 40.89 3.86
2695 2993 4.951094 ACAGTGGAAGATAGAGGACACTAC 59.049 45.833 0.00 0.00 37.09 2.73
2699 2997 3.366396 GGACAGTGGAAGATAGAGGACA 58.634 50.000 0.00 0.00 0.00 4.02
2721 3019 3.727970 GCGTGGCTTCTAAAATGTAGTGC 60.728 47.826 0.00 0.00 0.00 4.40
2742 3041 4.013728 TGACCTATACAACACCCAAATGC 58.986 43.478 0.00 0.00 0.00 3.56
2777 3076 5.880054 TTCACCTAGCAAAGCAATACTTC 57.120 39.130 0.00 0.00 37.75 3.01
2780 3079 6.183360 GCATTTTTCACCTAGCAAAGCAATAC 60.183 38.462 0.00 0.00 0.00 1.89
2781 3080 5.868801 GCATTTTTCACCTAGCAAAGCAATA 59.131 36.000 0.00 0.00 0.00 1.90
3108 3407 2.203625 AGCCCGCCAACAAACCAT 60.204 55.556 0.00 0.00 0.00 3.55
3141 3440 6.163135 ACCTGGTTAGTGCTAATGAGATAC 57.837 41.667 0.00 0.00 0.00 2.24
3204 3504 6.548441 AAATGTTGCATTCATGGTTGAAAG 57.452 33.333 5.81 0.00 44.70 2.62
3223 3523 7.425606 AGTACTGGTAAACAAGCAAGAAAATG 58.574 34.615 0.00 0.00 34.56 2.32
3229 3529 4.642429 AGGAGTACTGGTAAACAAGCAAG 58.358 43.478 0.00 0.00 34.56 4.01
3278 3578 8.420222 TCAATGTACTCATGGTTGAAAACAAAT 58.580 29.630 0.00 0.00 40.21 2.32
3332 3634 6.342111 CCTGTCTATCTTTTCTGGTTAGACC 58.658 44.000 0.00 0.00 38.53 3.85
3371 3675 9.631452 AATTAACTGCTAGAGATTTGCTTTTTC 57.369 29.630 0.00 0.00 0.00 2.29
3471 3938 6.556874 TGGTACATCTGTCATAATATGGGTCA 59.443 38.462 0.00 0.00 0.00 4.02
3473 3940 7.072454 AGTTGGTACATCTGTCATAATATGGGT 59.928 37.037 0.00 0.00 36.96 4.51
3545 4012 6.778069 TGACTGGAGAGATAAATACGGAAGAT 59.222 38.462 0.00 0.00 0.00 2.40
3554 4021 7.632462 GCATATCGGATGACTGGAGAGATAAAT 60.632 40.741 0.00 0.00 0.00 1.40
3613 4080 7.124298 AGGGGAAGGAATTAATTTTGCTAAGAC 59.876 37.037 1.43 0.00 0.00 3.01
3676 4143 7.425882 TGTGACTATTAAAAACAAAACGTGTCG 59.574 33.333 0.00 0.00 40.60 4.35
3682 4149 9.562583 TGACTGTGTGACTATTAAAAACAAAAC 57.437 29.630 0.00 0.00 0.00 2.43
3683 4150 9.562583 GTGACTGTGTGACTATTAAAAACAAAA 57.437 29.630 0.00 0.00 0.00 2.44
3684 4151 8.731605 TGTGACTGTGTGACTATTAAAAACAAA 58.268 29.630 0.00 0.00 0.00 2.83
3685 4152 8.178964 GTGTGACTGTGTGACTATTAAAAACAA 58.821 33.333 0.00 0.00 0.00 2.83
3686 4153 7.464844 CGTGTGACTGTGTGACTATTAAAAACA 60.465 37.037 0.00 0.00 0.00 2.83
3703 4170 3.116300 AGCGATAAATAGCGTGTGACTG 58.884 45.455 0.00 0.00 37.43 3.51
3704 4171 3.438297 AGCGATAAATAGCGTGTGACT 57.562 42.857 0.00 0.00 37.43 3.41
3705 4172 4.516092 AAAGCGATAAATAGCGTGTGAC 57.484 40.909 0.00 0.00 37.43 3.67
3706 4173 6.838198 AATAAAGCGATAAATAGCGTGTGA 57.162 33.333 0.00 0.00 37.43 3.58
3707 4174 7.227461 CCTAATAAAGCGATAAATAGCGTGTG 58.773 38.462 0.00 0.00 37.43 3.82
3708 4175 6.367969 CCCTAATAAAGCGATAAATAGCGTGT 59.632 38.462 0.00 0.00 37.43 4.49
3709 4176 6.367969 ACCCTAATAAAGCGATAAATAGCGTG 59.632 38.462 0.00 0.00 37.43 5.34
3710 4177 6.367969 CACCCTAATAAAGCGATAAATAGCGT 59.632 38.462 0.00 0.00 37.43 5.07
3711 4178 6.672357 GCACCCTAATAAAGCGATAAATAGCG 60.672 42.308 0.00 0.00 38.61 4.26
3712 4179 6.148811 TGCACCCTAATAAAGCGATAAATAGC 59.851 38.462 0.00 0.00 0.00 2.97
3713 4180 7.519002 GTGCACCCTAATAAAGCGATAAATAG 58.481 38.462 5.22 0.00 0.00 1.73
3715 4182 5.049680 CGTGCACCCTAATAAAGCGATAAAT 60.050 40.000 12.15 0.00 0.00 1.40
3719 4186 2.159014 TCGTGCACCCTAATAAAGCGAT 60.159 45.455 12.15 0.00 0.00 4.58
3720 4187 1.205179 TCGTGCACCCTAATAAAGCGA 59.795 47.619 12.15 0.00 0.00 4.93
3721 4188 1.326548 GTCGTGCACCCTAATAAAGCG 59.673 52.381 12.15 0.00 0.00 4.68
3722 4189 2.608090 GAGTCGTGCACCCTAATAAAGC 59.392 50.000 12.15 0.00 0.00 3.51
3730 4206 0.249911 GTCTTTGAGTCGTGCACCCT 60.250 55.000 12.15 7.38 0.00 4.34
3735 4211 1.527311 GAGGTTGTCTTTGAGTCGTGC 59.473 52.381 0.00 0.00 0.00 5.34
3738 4214 3.653344 TGATGAGGTTGTCTTTGAGTCG 58.347 45.455 0.00 0.00 0.00 4.18
3747 4223 8.258708 ACTTAGGTAGTAATTGATGAGGTTGTC 58.741 37.037 0.00 0.00 34.56 3.18
3760 4236 9.263446 TCACTTTGGTCATACTTAGGTAGTAAT 57.737 33.333 0.00 0.00 42.45 1.89
3763 4239 7.015877 TGTTCACTTTGGTCATACTTAGGTAGT 59.984 37.037 0.00 0.00 41.04 2.73
3772 4248 6.312399 TGTTCATGTTCACTTTGGTCATAC 57.688 37.500 0.00 0.00 0.00 2.39
3789 4273 5.127682 GTGCCTTTATTTCCTGGATGTTCAT 59.872 40.000 0.00 0.00 0.00 2.57
3921 4406 8.997621 TTCATACTGTACACAGAATAAAGGTC 57.002 34.615 16.05 0.00 46.59 3.85
3978 4470 3.387374 AGATCCTCTGCATGTAGTTGGAG 59.613 47.826 23.17 10.93 36.49 3.86
3979 4471 3.133542 CAGATCCTCTGCATGTAGTTGGA 59.866 47.826 21.99 21.99 37.72 3.53
3980 4472 3.464907 CAGATCCTCTGCATGTAGTTGG 58.535 50.000 10.80 13.48 37.72 3.77
3993 4485 3.065655 GCTACATCATGTGCAGATCCTC 58.934 50.000 0.00 0.00 0.00 3.71
4004 4496 2.096980 CACTTGCACAGGCTACATCATG 59.903 50.000 0.00 0.00 41.91 3.07
4040 4532 2.936202 AGATTTAGGCGCCACATCAAT 58.064 42.857 31.54 17.78 0.00 2.57
4091 4583 9.418045 TGCATGATTATCATCATAGCAAATTTG 57.582 29.630 14.03 14.03 46.79 2.32
4094 4586 8.197439 CCATGCATGATTATCATCATAGCAAAT 58.803 33.333 28.31 10.29 46.79 2.32
4108 4600 4.281435 CACAATTAGGGCCATGCATGATTA 59.719 41.667 28.31 11.08 0.00 1.75
4122 4614 9.219603 TGAAGAGTTAGAATTCACACAATTAGG 57.780 33.333 8.44 0.00 0.00 2.69
4129 4621 4.997395 TGGCTGAAGAGTTAGAATTCACAC 59.003 41.667 8.44 3.60 0.00 3.82
4184 4676 9.912634 CTAATTTCATTTTTCCTCTTGCTAACA 57.087 29.630 0.00 0.00 0.00 2.41
4210 4702 4.457466 TCAAGTTTCTAGACCAACCAACC 58.543 43.478 4.07 0.00 0.00 3.77
4287 4817 2.341846 TCTTCCCGTTTCACTTGCTT 57.658 45.000 0.00 0.00 0.00 3.91
4308 4838 8.319057 ACTAAATGTGATGGGAGACACTTATA 57.681 34.615 0.00 0.00 37.81 0.98
4310 4840 6.620877 ACTAAATGTGATGGGAGACACTTA 57.379 37.500 0.00 0.00 37.81 2.24
4318 4848 5.255397 AGGTCAAACTAAATGTGATGGGA 57.745 39.130 0.00 0.00 0.00 4.37
4319 4849 5.064707 CGTAGGTCAAACTAAATGTGATGGG 59.935 44.000 0.00 0.00 0.00 4.00
4342 4872 6.589454 GCCAACCAAACTTTAAAATTCATCG 58.411 36.000 0.00 0.00 0.00 3.84
4367 4897 1.211190 CTTTTCCTCTGCCGCTTGC 59.789 57.895 0.00 0.00 41.77 4.01
4399 4929 0.533308 TCCTGTTTCACGTTTCCGGG 60.533 55.000 0.00 0.00 39.43 5.73
4400 4930 0.865769 CTCCTGTTTCACGTTTCCGG 59.134 55.000 0.00 0.00 38.78 5.14
4415 4945 1.065854 CACTTTCCCGAATGCTCTCCT 60.066 52.381 0.00 0.00 0.00 3.69
4442 4975 5.629079 AAAAATCCCTTAGTCTCTTTGCG 57.371 39.130 0.00 0.00 0.00 4.85
4472 5006 5.954296 TCTAACCTCGTATTAAGCGCTAT 57.046 39.130 12.05 3.57 0.00 2.97
4491 5025 4.651778 ACTACTTGGCATGCAGTTTTCTA 58.348 39.130 21.36 0.00 0.00 2.10
4498 5032 2.988010 TAGGACTACTTGGCATGCAG 57.012 50.000 21.36 11.91 0.00 4.41
4503 5037 4.800023 TGCTACTATAGGACTACTTGGCA 58.200 43.478 4.43 0.00 0.00 4.92
4520 5054 7.504922 TGCGATTTGTGATTATTTTTGCTAC 57.495 32.000 0.00 0.00 0.00 3.58
4530 5064 7.323420 CCTCCTCTATATGCGATTTGTGATTA 58.677 38.462 0.00 0.00 0.00 1.75
4534 5068 3.681897 GCCTCCTCTATATGCGATTTGTG 59.318 47.826 0.00 0.00 0.00 3.33
4538 5072 4.833478 ATTGCCTCCTCTATATGCGATT 57.167 40.909 0.00 0.00 0.00 3.34
4542 5076 7.394359 TCCAATTAAATTGCCTCCTCTATATGC 59.606 37.037 0.00 0.00 38.92 3.14
4545 5079 6.934645 CGTCCAATTAAATTGCCTCCTCTATA 59.065 38.462 0.00 0.00 38.92 1.31
4554 5088 3.438360 CTGCTCGTCCAATTAAATTGCC 58.562 45.455 0.00 0.00 38.92 4.52
4583 5135 3.316029 ACATGACCAATTACGCATGATGG 59.684 43.478 16.04 0.00 40.29 3.51
4591 5143 5.801350 AGTTCATCACATGACCAATTACG 57.199 39.130 0.00 0.00 39.39 3.18
4628 5183 0.385390 CTTTCCACCACCACTTGTGC 59.615 55.000 0.00 0.00 44.01 4.57
4633 5188 1.006639 ACCAAACTTTCCACCACCACT 59.993 47.619 0.00 0.00 0.00 4.00
4635 5190 1.770294 GACCAAACTTTCCACCACCA 58.230 50.000 0.00 0.00 0.00 4.17
4638 5198 1.104577 GCCGACCAAACTTTCCACCA 61.105 55.000 0.00 0.00 0.00 4.17
4648 5208 0.031857 CTTTGCATGTGCCGACCAAA 59.968 50.000 2.07 0.00 41.18 3.28
4698 5258 3.674528 TCTCTTGGCTGACAGAGAAAG 57.325 47.619 6.65 6.29 33.44 2.62
4699 5259 3.244353 CCTTCTCTTGGCTGACAGAGAAA 60.244 47.826 19.13 9.10 40.01 2.52
4700 5260 2.301296 CCTTCTCTTGGCTGACAGAGAA 59.699 50.000 18.19 18.19 39.16 2.87
4762 5322 5.506317 GCTTAGCGTGCAATATTCCTTTCAT 60.506 40.000 0.00 0.00 0.00 2.57
4792 5457 9.447040 GCGTTTCTGAAACTTACTTTTTCTTAT 57.553 29.630 25.64 0.00 39.23 1.73
4793 5458 7.911727 GGCGTTTCTGAAACTTACTTTTTCTTA 59.088 33.333 25.64 0.00 39.23 2.10
4794 5459 6.750501 GGCGTTTCTGAAACTTACTTTTTCTT 59.249 34.615 25.64 0.00 39.23 2.52
4795 5460 6.127842 TGGCGTTTCTGAAACTTACTTTTTCT 60.128 34.615 25.64 0.00 39.23 2.52
4796 5461 6.031471 TGGCGTTTCTGAAACTTACTTTTTC 58.969 36.000 25.64 9.04 39.23 2.29
4797 5462 5.956642 TGGCGTTTCTGAAACTTACTTTTT 58.043 33.333 25.64 0.00 39.23 1.94
4798 5463 5.570234 TGGCGTTTCTGAAACTTACTTTT 57.430 34.783 25.64 0.00 39.23 2.27
4799 5464 5.124936 ACTTGGCGTTTCTGAAACTTACTTT 59.875 36.000 25.64 8.12 39.23 2.66
4800 5465 4.638865 ACTTGGCGTTTCTGAAACTTACTT 59.361 37.500 25.64 7.69 39.23 2.24
4801 5466 4.196971 ACTTGGCGTTTCTGAAACTTACT 58.803 39.130 25.64 5.73 39.23 2.24
4802 5467 4.547406 ACTTGGCGTTTCTGAAACTTAC 57.453 40.909 25.64 17.28 39.23 2.34
4803 5468 5.117584 TGTACTTGGCGTTTCTGAAACTTA 58.882 37.500 25.64 12.40 39.23 2.24
4835 5500 2.297701 GTGGTTTGTCTTTCTCTGCCA 58.702 47.619 0.00 0.00 0.00 4.92
4851 5518 7.492994 GGTTTTAATTTGTGTACATGTTGTGGT 59.507 33.333 2.30 0.00 0.00 4.16
4854 5521 7.221067 CACGGTTTTAATTTGTGTACATGTTGT 59.779 33.333 2.30 0.00 0.00 3.32
4857 5524 6.210078 CCACGGTTTTAATTTGTGTACATGT 58.790 36.000 2.69 2.69 0.00 3.21
4862 5529 3.635373 TGCCCACGGTTTTAATTTGTGTA 59.365 39.130 0.00 0.00 0.00 2.90
4868 5535 0.606096 GGCTGCCCACGGTTTTAATT 59.394 50.000 7.66 0.00 0.00 1.40
4869 5536 0.540830 TGGCTGCCCACGGTTTTAAT 60.541 50.000 17.53 0.00 35.79 1.40
4870 5537 0.540830 ATGGCTGCCCACGGTTTTAA 60.541 50.000 17.53 0.00 45.77 1.52
4871 5538 1.075836 ATGGCTGCCCACGGTTTTA 59.924 52.632 17.53 0.00 45.77 1.52
4872 5539 2.203625 ATGGCTGCCCACGGTTTT 60.204 55.556 17.53 0.00 45.77 2.43
4878 5545 2.209315 ACAAACCATGGCTGCCCAC 61.209 57.895 17.53 0.00 45.77 4.61
4904 5591 5.121105 TGCATCGATCTTCAGTCATCAAAT 58.879 37.500 0.00 0.00 0.00 2.32
4909 5596 3.865446 TGTTGCATCGATCTTCAGTCAT 58.135 40.909 0.00 0.00 0.00 3.06
4910 5597 3.317603 TGTTGCATCGATCTTCAGTCA 57.682 42.857 0.00 0.00 0.00 3.41
4911 5598 4.668576 TTTGTTGCATCGATCTTCAGTC 57.331 40.909 0.00 0.00 0.00 3.51
4912 5599 5.437289 TTTTTGTTGCATCGATCTTCAGT 57.563 34.783 0.00 0.00 0.00 3.41
4914 5601 5.088068 CGATTTTTGTTGCATCGATCTTCA 58.912 37.500 0.00 0.00 41.96 3.02
4915 5602 5.323900 TCGATTTTTGTTGCATCGATCTTC 58.676 37.500 0.00 0.00 42.91 2.87
4925 5612 3.612423 GCATACCCTTCGATTTTTGTTGC 59.388 43.478 0.00 0.00 0.00 4.17
4937 5624 5.449107 TTAGTGATAGTCGCATACCCTTC 57.551 43.478 0.00 0.00 0.00 3.46
4971 5658 3.684305 GCCAAGCTTTTGTGACAAAAAGT 59.316 39.130 22.08 10.95 45.12 2.66
4973 5660 3.668447 TGCCAAGCTTTTGTGACAAAAA 58.332 36.364 22.08 5.14 0.00 1.94
4984 5671 3.053395 TCCTAGGATTGATGCCAAGCTTT 60.053 43.478 7.62 0.00 38.63 3.51
4992 5679 4.699257 GGAATGACATCCTAGGATTGATGC 59.301 45.833 22.29 11.83 41.63 3.91
5008 5695 2.433604 TCCTCTGCTCATCAGGAATGAC 59.566 50.000 0.00 0.00 43.06 3.06
5010 5697 3.773418 ATCCTCTGCTCATCAGGAATG 57.227 47.619 0.00 0.00 43.06 2.67
5034 5721 2.187958 TGAGTGATAAGTGGAGGTGGG 58.812 52.381 0.00 0.00 0.00 4.61
5052 5739 4.709397 ACTGGACAACCAAATGTCTTTTGA 59.291 37.500 11.71 0.00 46.36 2.69
5130 5818 6.423905 TCAACTCCGAGAAAAATGTCAACTAG 59.576 38.462 1.33 0.00 0.00 2.57
5142 5830 2.612212 GTGTTGCTTCAACTCCGAGAAA 59.388 45.455 1.33 0.00 43.85 2.52
5209 5898 6.659745 ATATACAATCCGTGTTAGGCTGTA 57.340 37.500 0.00 0.00 41.98 2.74
5211 5900 6.861065 AAATATACAATCCGTGTTAGGCTG 57.139 37.500 0.00 0.00 41.98 4.85
5262 5951 5.942872 ACAGCTAACATAGTTGAATTGCAC 58.057 37.500 8.02 0.00 39.07 4.57
5265 5954 7.810658 ACTCAACAGCTAACATAGTTGAATTG 58.189 34.615 13.93 7.26 46.56 2.32
5323 6264 9.903682 CTATTTTGCATAATTCATAGGACTTGG 57.096 33.333 7.71 0.00 0.00 3.61
5391 6367 7.333528 TGCAAGTTTTGACTTTATCAGTTCT 57.666 32.000 0.00 0.00 38.99 3.01
5400 6376 5.750067 CACTAGCATTGCAAGTTTTGACTTT 59.250 36.000 11.91 0.00 0.00 2.66
5450 6426 1.826385 AGGAACAACCATGCTACAGC 58.174 50.000 0.00 0.00 42.04 4.40
5452 6428 2.304470 TGCTAGGAACAACCATGCTACA 59.696 45.455 0.00 0.00 42.04 2.74
5457 6433 3.149196 ACACTTGCTAGGAACAACCATG 58.851 45.455 0.00 0.00 42.04 3.66
5502 6478 6.889301 AGTGTGGCCTGATGATAATAATTG 57.111 37.500 3.32 0.00 0.00 2.32
5505 6481 7.573710 ACTAAAGTGTGGCCTGATGATAATAA 58.426 34.615 3.32 0.00 0.00 1.40
5543 6519 2.171237 CCACCATACAGCTTCATCCAGA 59.829 50.000 0.00 0.00 0.00 3.86
5553 6529 2.790433 TGTTCCTTTCCACCATACAGC 58.210 47.619 0.00 0.00 0.00 4.40
5582 6558 5.197682 ACTAGTAGTTGAGGACACACAAC 57.802 43.478 0.00 0.00 45.02 3.32
5584 6560 5.872963 TCTACTAGTAGTTGAGGACACACA 58.127 41.667 25.58 2.87 34.84 3.72
5585 6561 7.120873 TCAATCTACTAGTAGTTGAGGACACAC 59.879 40.741 26.72 0.00 33.79 3.82
5687 6663 4.319190 CGTATGTCGTCTGGAAAAGCAAAA 60.319 41.667 0.00 0.00 34.52 2.44
5697 6676 4.027621 CGAAAATTCTCGTATGTCGTCTGG 60.028 45.833 0.00 0.00 40.80 3.86
5802 6781 1.454201 GGAACCTGTGCTTAGAAGGC 58.546 55.000 0.00 0.00 34.18 4.35
5970 6949 2.804697 TTTCGACGTCAACATCCTCA 57.195 45.000 17.16 0.00 0.00 3.86
5976 6955 0.393448 TCCCCATTTCGACGTCAACA 59.607 50.000 17.16 0.00 0.00 3.33
6114 7093 1.073923 GACATGTCCCAGTTCCCACTT 59.926 52.381 15.31 0.00 0.00 3.16
6142 7121 1.602311 GATGCGCTCCTTCCAATCAT 58.398 50.000 9.73 0.00 0.00 2.45
6147 7126 2.434843 ATCCGATGCGCTCCTTCCA 61.435 57.895 9.73 0.00 0.00 3.53
6200 7179 0.461339 TTATCTTTGAGACCGCGGCC 60.461 55.000 28.58 16.50 0.00 6.13
6217 7196 7.598869 CACACATTTTCAGCTACTAGTGAGTTA 59.401 37.037 5.39 0.00 37.10 2.24
6281 7261 3.054166 TGTCACCGTCAGTAAACAATCG 58.946 45.455 0.00 0.00 0.00 3.34
6339 7321 4.432712 ACATGGCAGTCAAAAGTCAAAAC 58.567 39.130 0.00 0.00 0.00 2.43
6453 7448 1.071605 GGCATCGAACACTGTCAGAC 58.928 55.000 6.91 0.00 0.00 3.51
6572 7567 2.094762 AGGCGCGACAAGAACTTATT 57.905 45.000 17.71 0.00 0.00 1.40
6631 7626 4.884458 TGATGTCAACACGCAAACTAAA 57.116 36.364 0.00 0.00 0.00 1.85
6641 7646 6.862608 TGCAAACAAATAGATGATGTCAACAC 59.137 34.615 0.00 0.00 0.00 3.32
6647 7652 6.028146 TGCTTGCAAACAAATAGATGATGT 57.972 33.333 0.00 0.00 34.74 3.06
6649 7654 6.327934 GTCTGCTTGCAAACAAATAGATGAT 58.672 36.000 3.80 0.00 34.74 2.45
6670 7675 6.036844 GGAAGAACACAAAGAGTTTTACGTCT 59.963 38.462 0.00 0.00 0.00 4.18
6725 7735 2.604462 CCACTCAAAACAAAGCAACTGC 59.396 45.455 0.00 0.00 42.49 4.40
6740 7750 1.527034 GCTCAATGCAGTTCCACTCA 58.473 50.000 0.00 0.00 42.31 3.41
6803 7827 2.434359 CCTCCGGTTCAAGTCCGC 60.434 66.667 0.00 0.00 45.71 5.54
6804 7828 1.080025 GTCCTCCGGTTCAAGTCCG 60.080 63.158 0.00 0.00 46.49 4.79
6840 7864 2.027192 TCTGGTTTGTCACTATCAGGCC 60.027 50.000 0.00 0.00 0.00 5.19
6941 7971 1.946768 AGTTGCACGCAAAGCTCTTAA 59.053 42.857 5.94 0.00 37.70 1.85
6948 7980 3.058983 TGTCTTATGAGTTGCACGCAAAG 60.059 43.478 5.94 0.00 37.70 2.77
6966 7998 2.625639 AGGACTGACTTTCCCATGTCT 58.374 47.619 0.00 0.00 33.01 3.41
7004 8041 6.074088 GGCAGTCATTTTCGATGTCTATGTAG 60.074 42.308 0.00 0.00 0.00 2.74
7005 8042 5.753438 GGCAGTCATTTTCGATGTCTATGTA 59.247 40.000 0.00 0.00 0.00 2.29
7006 8043 4.572389 GGCAGTCATTTTCGATGTCTATGT 59.428 41.667 0.00 0.00 0.00 2.29
7011 8048 2.474526 CGTGGCAGTCATTTTCGATGTC 60.475 50.000 0.00 0.00 0.00 3.06
7083 8123 4.143030 CCACGATCAAACAAAGCAGTAGAG 60.143 45.833 0.00 0.00 0.00 2.43
7092 8132 4.158764 AGTTTTGGTCCACGATCAAACAAA 59.841 37.500 15.32 0.00 41.52 2.83
7093 8133 3.697045 AGTTTTGGTCCACGATCAAACAA 59.303 39.130 15.32 0.00 41.52 2.83
7094 8134 3.066064 CAGTTTTGGTCCACGATCAAACA 59.934 43.478 15.32 0.00 41.52 2.83
7095 8135 3.550030 CCAGTTTTGGTCCACGATCAAAC 60.550 47.826 7.71 7.71 41.52 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.