Multiple sequence alignment - TraesCS1A01G272100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G272100 chr1A 100.000 4881 0 0 1 4881 465456138 465451258 0.000000e+00 9014.0
1 TraesCS1A01G272100 chr1A 88.235 136 16 0 2510 2645 335828259 335828394 3.910000e-36 163.0
2 TraesCS1A01G272100 chr1B 87.926 3636 195 115 1 3493 491042368 491038834 0.000000e+00 4058.0
3 TraesCS1A01G272100 chr1B 87.797 631 50 13 3621 4247 491038812 491038205 0.000000e+00 713.0
4 TraesCS1A01G272100 chr1B 85.976 164 21 2 4244 4405 521219375 521219538 1.810000e-39 174.0
5 TraesCS1A01G272100 chr1B 91.200 125 7 3 4532 4654 491036531 491036409 3.020000e-37 167.0
6 TraesCS1A01G272100 chr1B 87.500 136 17 0 2510 2645 346167528 346167663 1.820000e-34 158.0
7 TraesCS1A01G272100 chr1B 90.541 74 5 2 4807 4879 490762717 490762645 4.020000e-16 97.1
8 TraesCS1A01G272100 chr1B 97.059 34 1 0 4840 4873 100131387 100131420 1.900000e-04 58.4
9 TraesCS1A01G272100 chr1D 90.499 1642 92 30 1889 3516 366724266 366725857 0.000000e+00 2109.0
10 TraesCS1A01G272100 chr1D 88.731 1686 89 47 274 1891 366722572 366724224 0.000000e+00 1967.0
11 TraesCS1A01G272100 chr1D 92.138 636 35 9 3615 4247 366725862 366726485 0.000000e+00 883.0
12 TraesCS1A01G272100 chr1D 87.019 208 19 4 4445 4649 366726569 366726771 1.370000e-55 228.0
13 TraesCS1A01G272100 chr1D 89.831 177 11 3 1 176 366722401 366722571 2.290000e-53 220.0
14 TraesCS1A01G272100 chr1D 88.235 136 16 0 2510 2645 267385359 267385224 3.910000e-36 163.0
15 TraesCS1A01G272100 chr4B 90.520 327 24 6 3922 4247 267355977 267355657 4.520000e-115 425.0
16 TraesCS1A01G272100 chr4B 87.709 179 14 4 4437 4613 267355579 267355407 8.280000e-48 202.0
17 TraesCS1A01G272100 chr4B 83.333 120 20 0 1505 1624 608967283 608967402 1.440000e-20 111.0
18 TraesCS1A01G272100 chr5B 88.235 170 12 4 4446 4613 444455512 444455349 3.850000e-46 196.0
19 TraesCS1A01G272100 chr3A 87.421 159 18 2 4246 4402 535000405 535000247 1.080000e-41 182.0
20 TraesCS1A01G272100 chr6D 86.585 164 20 2 4246 4407 467802432 467802269 3.880000e-41 180.0
21 TraesCS1A01G272100 chr6D 80.282 71 14 0 2513 2583 425902669 425902599 2.000000e-03 54.7
22 TraesCS1A01G272100 chr7D 85.465 172 23 2 4246 4415 454079408 454079237 1.400000e-40 178.0
23 TraesCS1A01G272100 chr7A 86.503 163 20 2 4245 4405 494786828 494786990 1.400000e-40 178.0
24 TraesCS1A01G272100 chr6B 86.061 165 21 2 4243 4405 226361515 226361679 5.020000e-40 176.0
25 TraesCS1A01G272100 chr6B 100.000 28 0 0 2556 2583 640978738 640978711 9.000000e-03 52.8
26 TraesCS1A01G272100 chr2D 85.714 168 22 2 4242 4407 387193691 387193858 5.020000e-40 176.0
27 TraesCS1A01G272100 chr4A 83.696 184 30 0 2213 2396 78160742 78160559 1.810000e-39 174.0
28 TraesCS1A01G272100 chr5A 85.802 162 21 2 4246 4405 320214405 320214244 2.340000e-38 171.0
29 TraesCS1A01G272100 chr5A 84.167 120 19 0 1505 1624 662530789 662530670 3.090000e-22 117.0
30 TraesCS1A01G272100 chr4D 84.940 166 25 0 2231 2396 396433673 396433508 8.400000e-38 169.0
31 TraesCS1A01G272100 chr4D 83.708 178 27 2 4231 4406 34661512 34661689 3.020000e-37 167.0
32 TraesCS1A01G272100 chr2B 80.110 181 33 3 1504 1682 154234146 154234325 1.100000e-26 132.0
33 TraesCS1A01G272100 chr2B 100.000 32 0 0 3550 3581 306923516 306923547 5.280000e-05 60.2
34 TraesCS1A01G272100 chr2A 80.220 182 31 5 1504 1682 101887667 101887846 1.100000e-26 132.0
35 TraesCS1A01G272100 chr2A 90.244 41 4 0 4828 4868 202103962 202104002 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G272100 chr1A 465451258 465456138 4880 True 9014.0 9014 100.000000 1 4881 1 chr1A.!!$R1 4880
1 TraesCS1A01G272100 chr1B 491036409 491042368 5959 True 1646.0 4058 88.974333 1 4654 3 chr1B.!!$R2 4653
2 TraesCS1A01G272100 chr1D 366722401 366726771 4370 False 1081.4 2109 89.643600 1 4649 5 chr1D.!!$F1 4648
3 TraesCS1A01G272100 chr4B 267355407 267355977 570 True 313.5 425 89.114500 3922 4613 2 chr4B.!!$R1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 82 0.107410 AATTGGTCGGCAGCGGAATA 60.107 50.0 3.86 0.00 0.00 1.75 F
509 545 0.110823 GACGGTGAAACGCATGTGTC 60.111 55.0 13.23 1.45 38.12 3.67 F
2139 2320 0.184933 CCAAAGGGTGGGTGAACTCA 59.815 55.0 0.00 0.00 44.64 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1771 0.588252 CGCACCTGTTGTTGAGAAGG 59.412 55.0 0.00 0.00 35.82 3.46 R
2144 2325 0.527600 CCGATCAAAGACGGCGATGA 60.528 55.0 16.62 12.68 42.55 2.92 R
3897 4105 0.037605 AAAACCCTAGGACGTGCGAG 60.038 55.0 11.48 10.20 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.930634 ATGCCTCTCTTTGACTTTTGC 57.069 42.857 0.00 0.00 0.00 3.68
37 38 7.033185 TCTCTTTGACTTTTGCTTTGTTTACC 58.967 34.615 0.00 0.00 0.00 2.85
43 45 2.500509 TTGCTTTGTTTACCGGCTTG 57.499 45.000 0.00 0.00 0.00 4.01
55 57 1.894756 CGGCTTGGACGGGAAAACA 60.895 57.895 0.00 0.00 0.00 2.83
60 62 2.607038 GCTTGGACGGGAAAACACATTC 60.607 50.000 0.00 0.00 0.00 2.67
79 81 1.378514 AATTGGTCGGCAGCGGAAT 60.379 52.632 3.86 0.00 0.00 3.01
80 82 0.107410 AATTGGTCGGCAGCGGAATA 60.107 50.000 3.86 0.00 0.00 1.75
81 83 0.814010 ATTGGTCGGCAGCGGAATAC 60.814 55.000 3.86 0.00 0.00 1.89
82 84 1.895020 TTGGTCGGCAGCGGAATACT 61.895 55.000 3.86 0.00 0.00 2.12
103 105 9.973450 AATACTTACTGTAGATTATCAGCACTG 57.027 33.333 0.00 0.00 35.37 3.66
147 150 2.172293 GGGGAAATGCAGAGATGAGAGT 59.828 50.000 0.00 0.00 0.00 3.24
152 155 0.822811 TGCAGAGATGAGAGTGGAGC 59.177 55.000 0.00 0.00 0.00 4.70
186 189 3.011119 ACGACAAGCAGAGTACTCCTAG 58.989 50.000 19.38 10.79 0.00 3.02
187 190 2.223386 CGACAAGCAGAGTACTCCTAGC 60.223 54.545 19.38 19.36 0.00 3.42
194 197 5.511363 AGCAGAGTACTCCTAGCTTAGAAA 58.489 41.667 22.31 0.00 31.61 2.52
195 198 5.592688 AGCAGAGTACTCCTAGCTTAGAAAG 59.407 44.000 22.31 0.00 31.61 2.62
207 210 9.331282 TCCTAGCTTAGAAAGATGCTAAATTTC 57.669 33.333 0.00 0.00 37.53 2.17
208 211 8.563732 CCTAGCTTAGAAAGATGCTAAATTTCC 58.436 37.037 0.00 0.00 37.53 3.13
209 212 9.336171 CTAGCTTAGAAAGATGCTAAATTTCCT 57.664 33.333 0.00 0.00 37.53 3.36
210 213 8.586879 AGCTTAGAAAGATGCTAAATTTCCTT 57.413 30.769 0.00 0.00 34.23 3.36
211 214 9.029368 AGCTTAGAAAGATGCTAAATTTCCTTT 57.971 29.630 0.00 0.00 34.23 3.11
245 272 1.821088 AAAGGAGGAGGTGAACAGGT 58.179 50.000 0.00 0.00 0.00 4.00
292 319 6.147656 GTGAAATGAAACCTTTTGCTAATGGG 59.852 38.462 15.36 7.96 33.86 4.00
304 331 2.290896 TGCTAATGGGAAACACCAGAGG 60.291 50.000 0.00 0.00 45.20 3.69
320 347 3.282885 CAGAGGCATTTTTCTCCCTACC 58.717 50.000 0.00 0.00 0.00 3.18
341 368 2.159198 CCAAGCAAGCAGTGAACACTTT 60.159 45.455 4.63 0.00 40.20 2.66
357 384 3.209410 CACTTTCCCTAAGCTAGGCATG 58.791 50.000 0.00 0.00 44.86 4.06
398 425 1.177401 GATTCCCCTCAACAACTGCC 58.823 55.000 0.00 0.00 0.00 4.85
414 441 0.396974 TGCCCTGCTTCTGGTTTTGT 60.397 50.000 0.00 0.00 0.00 2.83
416 443 1.960689 GCCCTGCTTCTGGTTTTGTAA 59.039 47.619 0.00 0.00 0.00 2.41
417 444 2.562738 GCCCTGCTTCTGGTTTTGTAAT 59.437 45.455 0.00 0.00 0.00 1.89
418 445 3.367395 GCCCTGCTTCTGGTTTTGTAATC 60.367 47.826 0.00 0.00 0.00 1.75
419 446 4.082125 CCCTGCTTCTGGTTTTGTAATCT 58.918 43.478 0.00 0.00 0.00 2.40
421 448 4.520492 CCTGCTTCTGGTTTTGTAATCTGT 59.480 41.667 0.00 0.00 0.00 3.41
429 465 2.406596 TTTGTAATCTGTACGCCCCC 57.593 50.000 0.00 0.00 0.00 5.40
471 507 3.338126 CTCCTCAACCGACGGTCCG 62.338 68.421 22.00 14.86 33.12 4.79
480 516 4.267503 GACGGTCCGGATCGAGCC 62.268 72.222 41.82 25.12 38.51 4.70
509 545 0.110823 GACGGTGAAACGCATGTGTC 60.111 55.000 13.23 1.45 38.12 3.67
534 570 1.546476 GAGTACACACCCCACAGAGAG 59.454 57.143 0.00 0.00 0.00 3.20
535 571 1.147191 AGTACACACCCCACAGAGAGA 59.853 52.381 0.00 0.00 0.00 3.10
536 572 2.180276 GTACACACCCCACAGAGAGAT 58.820 52.381 0.00 0.00 0.00 2.75
537 573 2.623418 ACACACCCCACAGAGAGATA 57.377 50.000 0.00 0.00 0.00 1.98
538 574 2.902608 ACACACCCCACAGAGAGATAA 58.097 47.619 0.00 0.00 0.00 1.75
539 575 2.567615 ACACACCCCACAGAGAGATAAC 59.432 50.000 0.00 0.00 0.00 1.89
542 578 3.008049 ACACCCCACAGAGAGATAACAAC 59.992 47.826 0.00 0.00 0.00 3.32
558 594 2.404995 AACGCCGAGGAGACGTAGG 61.405 63.158 0.00 0.00 39.49 3.18
578 614 2.094442 GGAGTACAGACAAGACAGAGGC 60.094 54.545 0.00 0.00 0.00 4.70
644 680 0.759436 TACTCCCAGATCCCTTCGCC 60.759 60.000 0.00 0.00 0.00 5.54
654 690 1.743252 CCCTTCGCCTCTGACTTGC 60.743 63.158 0.00 0.00 0.00 4.01
672 718 1.671845 TGCGACCTTTTGTTACACCAC 59.328 47.619 0.00 0.00 0.00 4.16
673 719 1.002142 GCGACCTTTTGTTACACCACC 60.002 52.381 0.00 0.00 0.00 4.61
674 720 1.262151 CGACCTTTTGTTACACCACCG 59.738 52.381 0.00 0.00 0.00 4.94
681 730 0.816018 TGTTACACCACCGCACCAAG 60.816 55.000 0.00 0.00 0.00 3.61
702 751 2.527100 CTCCGTGTCAGATTAACCGAC 58.473 52.381 0.00 0.00 0.00 4.79
827 876 0.305313 CGAGCTACCTACACTCTCGC 59.695 60.000 0.00 0.00 39.82 5.03
831 880 1.076485 TACCTACACTCTCGCCCCC 60.076 63.158 0.00 0.00 0.00 5.40
856 910 1.135803 GTCGTGCTCTCAGTCTCACTC 60.136 57.143 0.00 0.00 0.00 3.51
867 921 0.453615 GTCTCACTCGCTCACACTCG 60.454 60.000 0.00 0.00 0.00 4.18
868 922 1.154131 CTCACTCGCTCACACTCGG 60.154 63.158 0.00 0.00 0.00 4.63
893 952 3.393360 GGCCTCCCGCTATATGCT 58.607 61.111 0.00 0.00 40.11 3.79
940 999 1.376543 CATTGCTGCTAGTGGAGGTG 58.623 55.000 0.00 0.00 31.89 4.00
941 1000 0.254178 ATTGCTGCTAGTGGAGGTGG 59.746 55.000 0.00 0.00 31.89 4.61
942 1001 2.124942 GCTGCTAGTGGAGGTGGC 60.125 66.667 0.00 0.00 31.89 5.01
943 1002 2.664081 GCTGCTAGTGGAGGTGGCT 61.664 63.158 0.00 0.00 31.89 4.75
944 1003 1.220206 CTGCTAGTGGAGGTGGCTG 59.780 63.158 0.00 0.00 0.00 4.85
945 1004 2.124942 GCTAGTGGAGGTGGCTGC 60.125 66.667 0.00 0.00 0.00 5.25
946 1005 2.586792 CTAGTGGAGGTGGCTGCC 59.413 66.667 12.87 12.87 0.00 4.85
947 1006 2.203922 TAGTGGAGGTGGCTGCCA 60.204 61.111 19.30 19.30 0.00 4.92
959 1043 1.054406 GGCTGCCATAGGAGGGTGTA 61.054 60.000 15.17 0.00 0.00 2.90
973 1057 1.377333 GTGTAGCTTGGCAGGGGAC 60.377 63.158 0.00 0.00 0.00 4.46
1337 1443 2.183555 GTACCTCAAGGACGGCGG 59.816 66.667 13.24 0.00 38.94 6.13
1338 1444 3.766691 TACCTCAAGGACGGCGGC 61.767 66.667 13.24 8.60 38.94 6.53
1551 1657 2.809601 CACTGGTACACGCTCCGC 60.810 66.667 0.00 0.00 0.00 5.54
1665 1771 2.027625 CCAGGTCGCCGTCAAGAAC 61.028 63.158 0.00 0.00 0.00 3.01
1689 1795 2.822255 AACAACAGGTGCGTGCGT 60.822 55.556 0.00 0.00 0.00 5.24
1690 1796 3.107104 AACAACAGGTGCGTGCGTG 62.107 57.895 0.00 0.00 0.00 5.34
1691 1797 4.962122 CAACAGGTGCGTGCGTGC 62.962 66.667 0.00 0.00 0.00 5.34
1737 1867 1.517832 GTGGCTAGCTCCGTGACAT 59.482 57.895 15.72 0.00 0.00 3.06
1754 1884 4.032786 GTGACATGTTTGCCTTTGTGTTTC 59.967 41.667 0.00 0.00 0.00 2.78
1936 2110 1.993370 GTCTTTGTGCCTAGCTACGTG 59.007 52.381 0.00 0.00 0.00 4.49
1977 2151 0.461870 ACGCAGCACTTGACACTTGA 60.462 50.000 0.00 0.00 0.00 3.02
2115 2296 2.202932 ATGGACATCGTGCTCGGC 60.203 61.111 8.49 0.00 37.69 5.54
2138 2319 3.036431 CCAAAGGGTGGGTGAACTC 57.964 57.895 0.00 0.00 44.64 3.01
2139 2320 0.184933 CCAAAGGGTGGGTGAACTCA 59.815 55.000 0.00 0.00 44.64 3.41
2140 2321 1.203050 CCAAAGGGTGGGTGAACTCAT 60.203 52.381 0.00 0.00 44.64 2.90
2141 2322 2.162681 CAAAGGGTGGGTGAACTCATC 58.837 52.381 0.00 0.00 0.00 2.92
2142 2323 1.747444 AAGGGTGGGTGAACTCATCT 58.253 50.000 0.00 0.00 0.00 2.90
2143 2324 2.642171 AGGGTGGGTGAACTCATCTA 57.358 50.000 0.00 0.00 0.00 1.98
2144 2325 3.136641 AGGGTGGGTGAACTCATCTAT 57.863 47.619 0.00 0.00 0.00 1.98
2145 2326 3.041946 AGGGTGGGTGAACTCATCTATC 58.958 50.000 0.00 0.00 0.00 2.08
2146 2327 2.771943 GGGTGGGTGAACTCATCTATCA 59.228 50.000 0.00 0.00 0.00 2.15
2147 2328 3.392616 GGGTGGGTGAACTCATCTATCAT 59.607 47.826 0.00 0.00 0.00 2.45
2148 2329 4.503991 GGGTGGGTGAACTCATCTATCATC 60.504 50.000 0.00 0.00 0.00 2.92
2149 2330 4.302455 GTGGGTGAACTCATCTATCATCG 58.698 47.826 0.00 0.00 0.00 3.84
2150 2331 3.243873 TGGGTGAACTCATCTATCATCGC 60.244 47.826 0.00 0.00 0.00 4.58
2151 2332 3.321497 GGTGAACTCATCTATCATCGCC 58.679 50.000 0.00 0.00 0.00 5.54
2152 2333 2.983136 GTGAACTCATCTATCATCGCCG 59.017 50.000 0.00 0.00 0.00 6.46
2154 2335 2.999507 ACTCATCTATCATCGCCGTC 57.000 50.000 0.00 0.00 0.00 4.79
2155 2336 2.509569 ACTCATCTATCATCGCCGTCT 58.490 47.619 0.00 0.00 0.00 4.18
2156 2337 2.887783 ACTCATCTATCATCGCCGTCTT 59.112 45.455 0.00 0.00 0.00 3.01
2157 2338 3.319405 ACTCATCTATCATCGCCGTCTTT 59.681 43.478 0.00 0.00 0.00 2.52
2159 2340 3.317993 TCATCTATCATCGCCGTCTTTGA 59.682 43.478 0.00 0.00 0.00 2.69
2160 2341 4.021981 TCATCTATCATCGCCGTCTTTGAT 60.022 41.667 0.00 0.00 33.59 2.57
2161 2342 3.902150 TCTATCATCGCCGTCTTTGATC 58.098 45.455 0.00 0.00 31.59 2.92
2162 2343 1.491670 ATCATCGCCGTCTTTGATCG 58.508 50.000 0.00 0.00 0.00 3.69
2167 2348 2.890474 CCGTCTTTGATCGGCCGG 60.890 66.667 27.83 8.07 40.28 6.13
2201 2382 0.391597 ATCGGTCGGTTAATGGCGAT 59.608 50.000 0.00 0.00 0.00 4.58
2203 2384 0.249322 CGGTCGGTTAATGGCGATCT 60.249 55.000 0.00 0.00 0.00 2.75
2309 2499 2.743928 GCTGGACAAGCGGTGGAG 60.744 66.667 0.00 0.00 43.45 3.86
2388 2578 1.377202 CACCAGGGTCATGGGAACG 60.377 63.158 6.61 0.00 45.25 3.95
2397 2587 2.081462 GTCATGGGAACGTTTGGGTAG 58.919 52.381 0.46 0.00 0.00 3.18
2402 2592 1.625315 GGGAACGTTTGGGTAGTACCT 59.375 52.381 18.85 0.00 38.64 3.08
2403 2593 2.354103 GGGAACGTTTGGGTAGTACCTC 60.354 54.545 18.85 9.69 38.64 3.85
2405 2595 2.014010 ACGTTTGGGTAGTACCTCCA 57.986 50.000 18.85 6.73 38.64 3.86
2407 2597 3.711863 ACGTTTGGGTAGTACCTCCATA 58.288 45.455 18.85 2.36 38.64 2.74
2408 2598 4.292643 ACGTTTGGGTAGTACCTCCATAT 58.707 43.478 18.85 0.00 38.64 1.78
2412 2602 5.899631 TTGGGTAGTACCTCCATATTTCC 57.100 43.478 18.85 0.00 38.64 3.13
2414 2604 5.544682 TGGGTAGTACCTCCATATTTCCTT 58.455 41.667 18.85 0.00 38.64 3.36
2415 2605 5.605488 TGGGTAGTACCTCCATATTTCCTTC 59.395 44.000 18.85 0.00 38.64 3.46
2416 2606 5.605488 GGGTAGTACCTCCATATTTCCTTCA 59.395 44.000 18.85 0.00 38.64 3.02
2417 2607 6.272558 GGGTAGTACCTCCATATTTCCTTCAT 59.727 42.308 18.85 0.00 38.64 2.57
2418 2608 7.202195 GGGTAGTACCTCCATATTTCCTTCATT 60.202 40.741 18.85 0.00 38.64 2.57
2419 2609 8.218488 GGTAGTACCTCCATATTTCCTTCATTT 58.782 37.037 12.41 0.00 34.73 2.32
2420 2610 9.628500 GTAGTACCTCCATATTTCCTTCATTTT 57.372 33.333 0.00 0.00 0.00 1.82
2422 2612 8.971073 AGTACCTCCATATTTCCTTCATTTTTG 58.029 33.333 0.00 0.00 0.00 2.44
2429 2619 4.769345 TTTCCTTCATTTTTGGCACCTT 57.231 36.364 0.00 0.00 0.00 3.50
2432 2622 5.878406 TCCTTCATTTTTGGCACCTTAAA 57.122 34.783 0.00 0.00 0.00 1.52
2449 2639 4.578516 CCTTAAATGCATCCATCGGTGTAA 59.421 41.667 0.00 0.00 0.00 2.41
2458 2648 3.472652 TCCATCGGTGTAATACATTGCC 58.527 45.455 0.00 0.00 0.00 4.52
2459 2649 3.118223 TCCATCGGTGTAATACATTGCCA 60.118 43.478 0.00 0.00 0.00 4.92
2492 2683 5.750067 AGTTGTGTCTGAATTTGAATTGTGC 59.250 36.000 0.00 0.00 0.00 4.57
2493 2684 5.518848 TGTGTCTGAATTTGAATTGTGCT 57.481 34.783 0.00 0.00 0.00 4.40
2650 2842 2.363795 TCCCACGGAGGTAGGCAG 60.364 66.667 0.00 0.00 34.66 4.85
2659 2851 1.801309 GAGGTAGGCAGGCTAGCTCG 61.801 65.000 34.66 7.12 40.52 5.03
2675 2867 2.808543 AGCTCGGAATGTGTCTGTTTTC 59.191 45.455 0.00 0.00 33.88 2.29
2711 2903 2.089201 TGCAGAATCAGCTCAACCATG 58.911 47.619 0.00 0.00 0.00 3.66
2721 2913 0.883833 CTCAACCATGGCTTGTGTCC 59.116 55.000 13.04 0.00 0.00 4.02
2742 2934 1.002430 TGTGGGTGCATCTCTCTTCAC 59.998 52.381 0.00 0.00 0.00 3.18
2743 2935 1.277557 GTGGGTGCATCTCTCTTCACT 59.722 52.381 0.00 0.00 0.00 3.41
2744 2936 1.552337 TGGGTGCATCTCTCTTCACTC 59.448 52.381 0.00 0.00 0.00 3.51
2745 2937 1.830477 GGGTGCATCTCTCTTCACTCT 59.170 52.381 0.00 0.00 0.00 3.24
2746 2938 2.235898 GGGTGCATCTCTCTTCACTCTT 59.764 50.000 0.00 0.00 0.00 2.85
2747 2939 3.520569 GGTGCATCTCTCTTCACTCTTC 58.479 50.000 0.00 0.00 0.00 2.87
2748 2940 3.056250 GGTGCATCTCTCTTCACTCTTCA 60.056 47.826 0.00 0.00 0.00 3.02
2803 2995 1.889530 GCAACAGGGACTACGAGGCT 61.890 60.000 0.00 0.00 36.02 4.58
2806 2998 0.966370 ACAGGGACTACGAGGCTGTC 60.966 60.000 0.00 0.00 36.02 3.51
2959 3151 0.394080 ACGACTTCCCCTACCGAGAG 60.394 60.000 0.00 0.00 0.00 3.20
2979 3171 2.188207 GAGCCTCCCCGCTTCTTC 59.812 66.667 0.00 0.00 39.87 2.87
3008 3203 8.991026 CCTCTTTATCATCAAGTCAATCTCATC 58.009 37.037 0.00 0.00 0.00 2.92
3013 3208 2.802256 TCAAGTCAATCTCATCGCTCG 58.198 47.619 0.00 0.00 0.00 5.03
3021 3216 0.798389 TCTCATCGCTCGTTTGCTCG 60.798 55.000 0.00 0.00 0.00 5.03
3043 3238 5.988092 CGTACCAACGTAAATTTTCTGGAA 58.012 37.500 5.68 0.00 44.21 3.53
3063 3258 3.982576 AAACCAAGTCAATTCCACGTC 57.017 42.857 0.00 0.00 0.00 4.34
3064 3259 2.930826 ACCAAGTCAATTCCACGTCT 57.069 45.000 0.00 0.00 0.00 4.18
3065 3260 3.208747 ACCAAGTCAATTCCACGTCTT 57.791 42.857 0.00 0.00 0.00 3.01
3068 3263 4.695455 ACCAAGTCAATTCCACGTCTTATG 59.305 41.667 0.00 0.00 0.00 1.90
3082 3285 1.831389 CTTATGCCCGAATCCACGCG 61.831 60.000 3.53 3.53 0.00 6.01
3126 3329 4.695217 AAATGTGTGCCAGTTTATACCG 57.305 40.909 0.00 0.00 0.00 4.02
3176 3379 0.612229 AGTGGACACCTCTGCATCTG 59.388 55.000 0.00 0.00 0.00 2.90
3177 3380 0.610174 GTGGACACCTCTGCATCTGA 59.390 55.000 0.00 0.00 0.00 3.27
3178 3381 0.900421 TGGACACCTCTGCATCTGAG 59.100 55.000 0.00 0.00 0.00 3.35
3211 3414 2.821366 GACAGGGCAGGTGCATCG 60.821 66.667 4.01 0.00 44.36 3.84
3228 3431 1.420430 TCGGGGGTTAGAATAGCAGG 58.580 55.000 0.00 0.00 0.00 4.85
3251 3454 3.868077 GTGCTGGCTCTGATTACTAGTTG 59.132 47.826 0.00 0.00 0.00 3.16
3252 3455 3.769300 TGCTGGCTCTGATTACTAGTTGA 59.231 43.478 0.00 0.00 0.00 3.18
3253 3456 4.142071 TGCTGGCTCTGATTACTAGTTGAG 60.142 45.833 0.00 3.26 0.00 3.02
3392 3595 7.085116 GTCTGTCATCTCGAAAAAGAACTCTA 58.915 38.462 0.00 0.00 0.00 2.43
3474 3678 2.290323 CCCCTGAACTAGTCTTTGGTGG 60.290 54.545 0.00 0.00 0.00 4.61
3498 3702 0.813184 ATCCGATGCTGTTTTGGCAG 59.187 50.000 0.00 0.00 43.15 4.85
3507 3711 1.000506 CTGTTTTGGCAGCTTCAGCAT 59.999 47.619 0.75 0.00 45.16 3.79
3520 3724 4.075763 CTTCAGCATAAGCACACTGAAC 57.924 45.455 0.00 0.00 42.56 3.18
3521 3725 3.124578 TCAGCATAAGCACACTGAACA 57.875 42.857 0.00 0.00 45.49 3.18
3522 3726 2.807967 TCAGCATAAGCACACTGAACAC 59.192 45.455 0.00 0.00 45.49 3.32
3524 3728 3.189910 CAGCATAAGCACACTGAACACAT 59.810 43.478 0.00 0.00 45.49 3.21
3525 3729 4.392754 CAGCATAAGCACACTGAACACATA 59.607 41.667 0.00 0.00 45.49 2.29
3526 3730 4.633126 AGCATAAGCACACTGAACACATAG 59.367 41.667 0.00 0.00 45.49 2.23
3527 3731 4.393062 GCATAAGCACACTGAACACATAGT 59.607 41.667 0.00 0.00 41.58 2.12
3528 3732 5.580691 GCATAAGCACACTGAACACATAGTA 59.419 40.000 0.00 0.00 41.58 1.82
3529 3733 6.258727 GCATAAGCACACTGAACACATAGTAT 59.741 38.462 0.00 0.00 41.58 2.12
3530 3734 7.624661 CATAAGCACACTGAACACATAGTATG 58.375 38.462 8.66 8.66 0.00 2.39
3531 3735 5.405935 AGCACACTGAACACATAGTATGA 57.594 39.130 17.13 0.00 0.00 2.15
3532 3736 5.982356 AGCACACTGAACACATAGTATGAT 58.018 37.500 17.13 1.72 0.00 2.45
3533 3737 5.814188 AGCACACTGAACACATAGTATGATG 59.186 40.000 17.13 12.72 0.00 3.07
3534 3738 5.812127 GCACACTGAACACATAGTATGATGA 59.188 40.000 17.13 0.00 0.00 2.92
3535 3739 6.237942 GCACACTGAACACATAGTATGATGAC 60.238 42.308 17.13 10.59 0.00 3.06
3536 3740 6.813152 CACACTGAACACATAGTATGATGACA 59.187 38.462 17.13 13.51 0.00 3.58
3537 3741 7.493645 CACACTGAACACATAGTATGATGACAT 59.506 37.037 17.13 0.00 40.16 3.06
3538 3742 8.695456 ACACTGAACACATAGTATGATGACATA 58.305 33.333 17.13 0.00 37.87 2.29
3539 3743 9.702494 CACTGAACACATAGTATGATGACATAT 57.298 33.333 17.13 6.51 40.45 1.78
3540 3744 9.702494 ACTGAACACATAGTATGATGACATATG 57.298 33.333 17.13 0.00 40.45 1.78
3541 3745 8.538409 TGAACACATAGTATGATGACATATGC 57.462 34.615 17.13 0.00 40.45 3.14
3542 3746 8.149647 TGAACACATAGTATGATGACATATGCA 58.850 33.333 17.13 2.39 40.45 3.96
3543 3747 8.907222 AACACATAGTATGATGACATATGCAA 57.093 30.769 17.13 0.00 40.45 4.08
3544 3748 9.511272 AACACATAGTATGATGACATATGCAAT 57.489 29.630 17.13 0.00 40.45 3.56
3545 3749 8.943002 ACACATAGTATGATGACATATGCAATG 58.057 33.333 17.13 0.00 40.45 2.82
3546 3750 8.943002 CACATAGTATGATGACATATGCAATGT 58.057 33.333 17.13 12.41 40.45 2.71
3551 3755 9.645059 AGTATGATGACATATGCAATGTAGTAC 57.355 33.333 12.51 0.00 40.45 2.73
3552 3756 9.645059 GTATGATGACATATGCAATGTAGTACT 57.355 33.333 12.51 0.00 40.45 2.73
3554 3758 8.593492 TGATGACATATGCAATGTAGTACTTC 57.407 34.615 0.00 0.00 31.52 3.01
3555 3759 7.657354 TGATGACATATGCAATGTAGTACTTCC 59.343 37.037 0.00 0.00 31.52 3.46
3556 3760 7.124573 TGACATATGCAATGTAGTACTTCCT 57.875 36.000 0.00 0.00 31.52 3.36
3557 3761 7.210174 TGACATATGCAATGTAGTACTTCCTC 58.790 38.462 0.00 0.00 31.52 3.71
3558 3762 7.069950 TGACATATGCAATGTAGTACTTCCTCT 59.930 37.037 0.00 0.00 31.52 3.69
3559 3763 8.478775 ACATATGCAATGTAGTACTTCCTCTA 57.521 34.615 0.00 0.00 0.00 2.43
3560 3764 9.094578 ACATATGCAATGTAGTACTTCCTCTAT 57.905 33.333 0.00 0.00 0.00 1.98
3561 3765 9.579768 CATATGCAATGTAGTACTTCCTCTATC 57.420 37.037 0.00 0.00 0.00 2.08
3562 3766 6.406692 TGCAATGTAGTACTTCCTCTATCC 57.593 41.667 0.00 0.00 0.00 2.59
3563 3767 5.304614 TGCAATGTAGTACTTCCTCTATCCC 59.695 44.000 0.00 0.00 0.00 3.85
3564 3768 5.304614 GCAATGTAGTACTTCCTCTATCCCA 59.695 44.000 0.00 0.00 0.00 4.37
3565 3769 6.014156 GCAATGTAGTACTTCCTCTATCCCAT 60.014 42.308 0.00 0.00 0.00 4.00
3566 3770 7.178628 GCAATGTAGTACTTCCTCTATCCCATA 59.821 40.741 0.00 0.00 0.00 2.74
3567 3771 9.090103 CAATGTAGTACTTCCTCTATCCCATAA 57.910 37.037 0.00 0.00 0.00 1.90
3568 3772 9.845214 AATGTAGTACTTCCTCTATCCCATAAT 57.155 33.333 0.00 0.00 0.00 1.28
3609 3813 9.999009 TGCTCTTTATATTATATTACGAGACGG 57.001 33.333 8.31 0.00 0.00 4.79
3616 3820 8.804912 ATATTATATTACGAGACGGAGGAAGT 57.195 34.615 0.00 0.00 0.00 3.01
3617 3821 9.896645 ATATTATATTACGAGACGGAGGAAGTA 57.103 33.333 0.00 0.00 0.00 2.24
3632 3836 6.587990 CGGAGGAAGTATATATGTTTCTGCTG 59.412 42.308 0.00 0.00 0.00 4.41
3659 3863 2.484241 CCGTCATTCTGCATCTCATCCA 60.484 50.000 0.00 0.00 0.00 3.41
3681 3885 5.592688 CCAAAGTTTCAGAAACCAGGACTTA 59.407 40.000 20.47 0.00 42.34 2.24
3682 3886 6.238759 CCAAAGTTTCAGAAACCAGGACTTAG 60.239 42.308 20.47 1.78 42.34 2.18
3683 3887 5.632034 AGTTTCAGAAACCAGGACTTAGT 57.368 39.130 20.47 0.00 42.34 2.24
3684 3888 6.742559 AGTTTCAGAAACCAGGACTTAGTA 57.257 37.500 20.47 0.00 42.34 1.82
3697 3901 9.047947 ACCAGGACTTAGTAACTCTGAAATTAT 57.952 33.333 0.00 0.00 0.00 1.28
3729 3937 5.011943 CCCCCTCAAAATCACAATTCTTTGA 59.988 40.000 0.00 0.00 36.64 2.69
3734 3942 6.205784 TCAAAATCACAATTCTTTGACCGTC 58.794 36.000 0.00 0.00 36.64 4.79
3735 3943 6.039270 TCAAAATCACAATTCTTTGACCGTCT 59.961 34.615 0.00 0.00 36.64 4.18
3748 3956 2.202544 CGTCTCTGCTCGCAGGAC 60.203 66.667 17.93 19.64 43.75 3.85
3793 4001 0.462759 GCAGTCCCCTGGAGAAATCG 60.463 60.000 0.00 0.00 39.22 3.34
3820 4028 1.021390 CGGTGACAGAATCAGGCCAC 61.021 60.000 5.01 0.00 38.28 5.01
3893 4101 1.289830 TCCAGTAGGGCTAGTTGGCTA 59.710 52.381 0.00 0.00 41.48 3.93
3894 4102 2.090719 TCCAGTAGGGCTAGTTGGCTAT 60.091 50.000 0.00 0.00 41.48 2.97
3895 4103 2.037772 CCAGTAGGGCTAGTTGGCTATG 59.962 54.545 0.00 0.00 41.48 2.23
3896 4104 2.037772 CAGTAGGGCTAGTTGGCTATGG 59.962 54.545 0.00 0.00 41.48 2.74
3897 4105 1.056660 TAGGGCTAGTTGGCTATGGC 58.943 55.000 0.00 0.00 41.48 4.40
3898 4106 0.695803 AGGGCTAGTTGGCTATGGCT 60.696 55.000 0.00 0.00 41.48 4.75
3919 4127 1.874739 CGCACGTCCTAGGGTTTTTGA 60.875 52.381 9.46 0.00 0.00 2.69
4086 4295 3.764972 GGGTGTAGGTCAGCTATATCCTC 59.235 52.174 2.72 0.00 43.26 3.71
4186 4395 2.764010 TGCCGGACTGTTGTATAGTGAT 59.236 45.455 5.05 0.00 0.00 3.06
4220 4429 0.703466 CAGAACGTTTCTCGCTCGTC 59.297 55.000 0.46 0.00 44.19 4.20
4247 4456 6.897259 TGTGTACAAAACTGTGAGTTCTAC 57.103 37.500 0.00 0.00 37.47 2.59
4249 4458 6.533723 TGTGTACAAAACTGTGAGTTCTACTG 59.466 38.462 0.00 0.00 37.47 2.74
4250 4459 5.522460 TGTACAAAACTGTGAGTTCTACTGC 59.478 40.000 0.00 0.00 37.47 4.40
4251 4460 3.877508 ACAAAACTGTGAGTTCTACTGCC 59.122 43.478 0.00 0.00 37.47 4.85
4252 4461 4.130118 CAAAACTGTGAGTTCTACTGCCT 58.870 43.478 0.00 0.00 37.47 4.75
4253 4462 3.669251 AACTGTGAGTTCTACTGCCTC 57.331 47.619 0.00 0.00 31.77 4.70
4254 4463 1.896465 ACTGTGAGTTCTACTGCCTCC 59.104 52.381 0.00 0.00 0.00 4.30
4255 4464 0.888619 TGTGAGTTCTACTGCCTCCG 59.111 55.000 0.00 0.00 0.00 4.63
4258 4467 1.968493 TGAGTTCTACTGCCTCCGTTT 59.032 47.619 0.00 0.00 0.00 3.60
4259 4468 2.367567 TGAGTTCTACTGCCTCCGTTTT 59.632 45.455 0.00 0.00 0.00 2.43
4260 4469 3.181458 TGAGTTCTACTGCCTCCGTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
4261 4470 4.039488 TGAGTTCTACTGCCTCCGTTTTTA 59.961 41.667 0.00 0.00 0.00 1.52
4262 4471 4.964593 AGTTCTACTGCCTCCGTTTTTAA 58.035 39.130 0.00 0.00 0.00 1.52
4263 4472 5.370679 AGTTCTACTGCCTCCGTTTTTAAA 58.629 37.500 0.00 0.00 0.00 1.52
4264 4473 6.002082 AGTTCTACTGCCTCCGTTTTTAAAT 58.998 36.000 0.00 0.00 0.00 1.40
4265 4474 7.163441 AGTTCTACTGCCTCCGTTTTTAAATA 58.837 34.615 0.00 0.00 0.00 1.40
4266 4475 7.827729 AGTTCTACTGCCTCCGTTTTTAAATAT 59.172 33.333 0.00 0.00 0.00 1.28
4267 4476 7.548196 TCTACTGCCTCCGTTTTTAAATATG 57.452 36.000 0.00 0.00 0.00 1.78
4268 4477 7.332557 TCTACTGCCTCCGTTTTTAAATATGA 58.667 34.615 0.00 0.00 0.00 2.15
4269 4478 6.436843 ACTGCCTCCGTTTTTAAATATGAG 57.563 37.500 0.00 1.73 0.00 2.90
4270 4479 5.944007 ACTGCCTCCGTTTTTAAATATGAGT 59.056 36.000 0.00 0.00 0.00 3.41
4271 4480 6.093633 ACTGCCTCCGTTTTTAAATATGAGTC 59.906 38.462 0.00 0.00 0.00 3.36
4272 4481 6.177610 TGCCTCCGTTTTTAAATATGAGTCT 58.822 36.000 0.00 0.00 0.00 3.24
4273 4482 6.657541 TGCCTCCGTTTTTAAATATGAGTCTT 59.342 34.615 0.00 0.00 0.00 3.01
4274 4483 7.175990 TGCCTCCGTTTTTAAATATGAGTCTTT 59.824 33.333 0.00 0.00 0.00 2.52
4275 4484 8.027189 GCCTCCGTTTTTAAATATGAGTCTTTT 58.973 33.333 0.00 0.00 0.00 2.27
4276 4485 9.908152 CCTCCGTTTTTAAATATGAGTCTTTTT 57.092 29.630 0.00 0.00 0.00 1.94
4303 4512 8.514594 ACAGATTTTAATATGGATTGCATACGG 58.485 33.333 0.00 0.00 32.12 4.02
4304 4513 8.729756 CAGATTTTAATATGGATTGCATACGGA 58.270 33.333 0.00 0.00 0.00 4.69
4305 4514 9.466497 AGATTTTAATATGGATTGCATACGGAT 57.534 29.630 0.00 0.00 0.00 4.18
4306 4515 9.507280 GATTTTAATATGGATTGCATACGGATG 57.493 33.333 2.22 2.22 36.02 3.51
4307 4516 7.994425 TTTAATATGGATTGCATACGGATGT 57.006 32.000 9.90 0.00 35.30 3.06
4308 4517 5.885230 AATATGGATTGCATACGGATGTG 57.115 39.130 9.90 0.00 35.30 3.21
4309 4518 2.708216 TGGATTGCATACGGATGTGT 57.292 45.000 9.90 0.00 35.30 3.72
4310 4519 3.828875 TGGATTGCATACGGATGTGTA 57.171 42.857 9.90 0.00 35.30 2.90
4311 4520 4.350368 TGGATTGCATACGGATGTGTAT 57.650 40.909 9.90 0.19 35.45 2.29
4312 4521 5.476091 TGGATTGCATACGGATGTGTATA 57.524 39.130 9.90 0.00 33.37 1.47
4313 4522 5.478407 TGGATTGCATACGGATGTGTATAG 58.522 41.667 9.90 0.00 33.37 1.31
4314 4523 5.245075 TGGATTGCATACGGATGTGTATAGA 59.755 40.000 9.90 0.00 33.37 1.98
4315 4524 5.577164 GGATTGCATACGGATGTGTATAGAC 59.423 44.000 9.90 0.00 33.37 2.59
4316 4525 5.784578 TTGCATACGGATGTGTATAGACT 57.215 39.130 9.90 0.00 33.37 3.24
4317 4526 6.887626 TTGCATACGGATGTGTATAGACTA 57.112 37.500 9.90 0.00 33.37 2.59
4318 4527 7.462571 TTGCATACGGATGTGTATAGACTAT 57.537 36.000 9.90 0.00 33.37 2.12
4319 4528 7.462571 TGCATACGGATGTGTATAGACTATT 57.537 36.000 9.90 0.00 33.37 1.73
4320 4529 7.892609 TGCATACGGATGTGTATAGACTATTT 58.107 34.615 9.90 0.00 33.37 1.40
4321 4530 8.364894 TGCATACGGATGTGTATAGACTATTTT 58.635 33.333 9.90 0.00 33.37 1.82
4322 4531 9.850628 GCATACGGATGTGTATAGACTATTTTA 57.149 33.333 9.90 0.00 33.37 1.52
4326 4535 9.352191 ACGGATGTGTATAGACTATTTTAGAGT 57.648 33.333 0.00 0.00 0.00 3.24
4327 4536 9.613957 CGGATGTGTATAGACTATTTTAGAGTG 57.386 37.037 0.00 0.00 0.00 3.51
4348 4557 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
4349 4558 6.712095 AGTGTAGATTCACTCATTTTGCTTCA 59.288 34.615 0.00 0.00 44.07 3.02
4350 4559 7.392673 AGTGTAGATTCACTCATTTTGCTTCAT 59.607 33.333 0.00 0.00 44.07 2.57
4351 4560 8.668353 GTGTAGATTCACTCATTTTGCTTCATA 58.332 33.333 0.00 0.00 35.68 2.15
4352 4561 9.399797 TGTAGATTCACTCATTTTGCTTCATAT 57.600 29.630 0.00 0.00 0.00 1.78
4353 4562 9.661187 GTAGATTCACTCATTTTGCTTCATATG 57.339 33.333 0.00 0.00 0.00 1.78
4354 4563 7.201145 AGATTCACTCATTTTGCTTCATATGC 58.799 34.615 0.00 0.00 0.00 3.14
4355 4564 5.900865 TCACTCATTTTGCTTCATATGCA 57.099 34.783 0.00 0.00 38.80 3.96
4356 4565 5.886992 TCACTCATTTTGCTTCATATGCAG 58.113 37.500 0.00 0.00 41.71 4.41
4357 4566 5.416639 TCACTCATTTTGCTTCATATGCAGT 59.583 36.000 4.26 0.00 41.71 4.40
4358 4567 5.742453 CACTCATTTTGCTTCATATGCAGTC 59.258 40.000 4.26 0.00 41.71 3.51
4359 4568 5.163581 ACTCATTTTGCTTCATATGCAGTCC 60.164 40.000 4.26 0.00 41.71 3.85
4360 4569 3.763097 TTTTGCTTCATATGCAGTCCG 57.237 42.857 4.26 0.00 41.71 4.79
4361 4570 1.016627 TTGCTTCATATGCAGTCCGC 58.983 50.000 4.26 0.00 41.71 5.54
4378 4587 4.280436 TCCGCACTGGAATCTTTAAAGA 57.720 40.909 19.83 19.83 46.38 2.52
4379 4588 4.647611 TCCGCACTGGAATCTTTAAAGAA 58.352 39.130 21.26 4.68 46.38 2.52
4380 4589 5.067273 TCCGCACTGGAATCTTTAAAGAAA 58.933 37.500 21.26 7.39 46.38 2.52
4381 4590 5.710099 TCCGCACTGGAATCTTTAAAGAAAT 59.290 36.000 21.26 13.37 46.38 2.17
4382 4591 6.208599 TCCGCACTGGAATCTTTAAAGAAATT 59.791 34.615 21.26 12.31 46.38 1.82
4383 4592 6.868339 CCGCACTGGAATCTTTAAAGAAATTT 59.132 34.615 21.26 11.61 42.00 1.82
4384 4593 8.026607 CCGCACTGGAATCTTTAAAGAAATTTA 58.973 33.333 21.26 7.08 42.00 1.40
4385 4594 9.573133 CGCACTGGAATCTTTAAAGAAATTTAT 57.427 29.630 21.26 1.49 38.77 1.40
4402 4611 9.780186 AGAAATTTATATTTAGGACGAAGGGAG 57.220 33.333 0.00 0.00 34.16 4.30
4403 4612 9.557061 GAAATTTATATTTAGGACGAAGGGAGT 57.443 33.333 0.00 0.00 34.16 3.85
4406 4615 8.773033 TTTATATTTAGGACGAAGGGAGTAGT 57.227 34.615 0.00 0.00 0.00 2.73
4407 4616 8.773033 TTATATTTAGGACGAAGGGAGTAGTT 57.227 34.615 0.00 0.00 0.00 2.24
4408 4617 7.672122 ATATTTAGGACGAAGGGAGTAGTTT 57.328 36.000 0.00 0.00 0.00 2.66
4409 4618 5.813513 TTTAGGACGAAGGGAGTAGTTTT 57.186 39.130 0.00 0.00 0.00 2.43
4410 4619 3.957591 AGGACGAAGGGAGTAGTTTTC 57.042 47.619 0.00 0.00 0.00 2.29
4411 4620 3.508426 AGGACGAAGGGAGTAGTTTTCT 58.492 45.455 0.00 0.00 0.00 2.52
4412 4621 3.902467 AGGACGAAGGGAGTAGTTTTCTT 59.098 43.478 0.00 0.00 0.00 2.52
4448 4699 4.903054 AGCATGATCCGATATCACAACAT 58.097 39.130 3.12 0.73 0.00 2.71
4481 4732 0.036022 TGTGCATGACCGATTGACCA 59.964 50.000 0.00 0.00 0.00 4.02
4487 4739 2.691409 TGACCGATTGACCATCTTCC 57.309 50.000 0.00 0.00 0.00 3.46
4489 4741 3.371034 TGACCGATTGACCATCTTCCTA 58.629 45.455 0.00 0.00 0.00 2.94
4496 4748 7.499232 ACCGATTGACCATCTTCCTAAATAAAG 59.501 37.037 0.00 0.00 0.00 1.85
4536 6294 8.527810 CCTAAAAATGGGAAATACTTGCAACTA 58.472 33.333 0.00 0.00 0.00 2.24
4620 6380 4.130118 AGATGCTCCCAAATTGATACGAC 58.870 43.478 0.00 0.00 0.00 4.34
4622 6382 2.238646 TGCTCCCAAATTGATACGACCT 59.761 45.455 0.00 0.00 0.00 3.85
4661 6421 5.552870 CCCAGTGGCTAATATCACTACTT 57.447 43.478 2.61 0.00 41.71 2.24
4662 6422 5.300752 CCCAGTGGCTAATATCACTACTTG 58.699 45.833 2.61 0.00 41.71 3.16
4663 6423 5.163301 CCCAGTGGCTAATATCACTACTTGT 60.163 44.000 2.61 0.00 41.71 3.16
4664 6424 6.041637 CCCAGTGGCTAATATCACTACTTGTA 59.958 42.308 2.61 0.00 41.71 2.41
4665 6425 6.924060 CCAGTGGCTAATATCACTACTTGTAC 59.076 42.308 0.00 0.00 41.71 2.90
4666 6426 7.201920 CCAGTGGCTAATATCACTACTTGTACT 60.202 40.741 0.00 0.00 41.71 2.73
4667 6427 7.863375 CAGTGGCTAATATCACTACTTGTACTC 59.137 40.741 0.00 0.00 41.71 2.59
4668 6428 7.014422 AGTGGCTAATATCACTACTTGTACTCC 59.986 40.741 0.00 0.00 41.81 3.85
4669 6429 6.837048 TGGCTAATATCACTACTTGTACTCCA 59.163 38.462 0.00 0.00 0.00 3.86
4670 6430 7.509318 TGGCTAATATCACTACTTGTACTCCAT 59.491 37.037 0.00 0.00 0.00 3.41
4671 6431 8.030106 GGCTAATATCACTACTTGTACTCCATC 58.970 40.741 0.00 0.00 0.00 3.51
4672 6432 8.030106 GCTAATATCACTACTTGTACTCCATCC 58.970 40.741 0.00 0.00 0.00 3.51
4673 6433 4.920640 ATCACTACTTGTACTCCATCCG 57.079 45.455 0.00 0.00 0.00 4.18
4674 6434 3.693807 TCACTACTTGTACTCCATCCGT 58.306 45.455 0.00 0.00 0.00 4.69
4675 6435 3.693085 TCACTACTTGTACTCCATCCGTC 59.307 47.826 0.00 0.00 0.00 4.79
4676 6436 3.022406 ACTACTTGTACTCCATCCGTCC 58.978 50.000 0.00 0.00 0.00 4.79
4677 6437 1.192428 ACTTGTACTCCATCCGTCCC 58.808 55.000 0.00 0.00 0.00 4.46
4678 6438 1.191535 CTTGTACTCCATCCGTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
4679 6439 1.553248 CTTGTACTCCATCCGTCCCAA 59.447 52.381 0.00 0.00 0.00 4.12
4680 6440 1.646912 TGTACTCCATCCGTCCCAAA 58.353 50.000 0.00 0.00 0.00 3.28
4681 6441 1.979308 TGTACTCCATCCGTCCCAAAA 59.021 47.619 0.00 0.00 0.00 2.44
4682 6442 2.372504 TGTACTCCATCCGTCCCAAAAA 59.627 45.455 0.00 0.00 0.00 1.94
4734 6494 6.517914 AAAAAGTTCGCGCATTTGAATAAA 57.482 29.167 8.75 0.00 0.00 1.40
4735 6495 6.704512 AAAAGTTCGCGCATTTGAATAAAT 57.295 29.167 8.75 0.00 36.97 1.40
4749 6509 9.748708 CATTTGAATAAATGTTCCCGAATATGT 57.251 29.630 4.94 0.00 45.14 2.29
4750 6510 9.748708 ATTTGAATAAATGTTCCCGAATATGTG 57.251 29.630 0.00 0.00 35.26 3.21
4751 6511 7.270757 TGAATAAATGTTCCCGAATATGTGG 57.729 36.000 0.00 0.00 0.00 4.17
4752 6512 7.057264 TGAATAAATGTTCCCGAATATGTGGA 58.943 34.615 0.00 0.00 0.00 4.02
4753 6513 7.723616 TGAATAAATGTTCCCGAATATGTGGAT 59.276 33.333 0.00 0.00 0.00 3.41
4754 6514 8.477419 AATAAATGTTCCCGAATATGTGGATT 57.523 30.769 0.00 0.00 0.00 3.01
4755 6515 6.790232 AAATGTTCCCGAATATGTGGATTT 57.210 33.333 0.00 0.00 0.00 2.17
4756 6516 5.772825 ATGTTCCCGAATATGTGGATTTG 57.227 39.130 0.00 0.00 0.00 2.32
4757 6517 3.951037 TGTTCCCGAATATGTGGATTTGG 59.049 43.478 0.00 0.00 39.33 3.28
4758 6518 4.204012 GTTCCCGAATATGTGGATTTGGA 58.796 43.478 4.28 0.00 41.36 3.53
4759 6519 4.511786 TCCCGAATATGTGGATTTGGAA 57.488 40.909 4.28 0.00 41.36 3.53
4760 6520 4.861196 TCCCGAATATGTGGATTTGGAAA 58.139 39.130 4.28 0.00 41.36 3.13
4761 6521 5.265191 TCCCGAATATGTGGATTTGGAAAA 58.735 37.500 4.28 0.00 41.36 2.29
4762 6522 5.717178 TCCCGAATATGTGGATTTGGAAAAA 59.283 36.000 4.28 0.00 41.36 1.94
4763 6523 6.042143 CCCGAATATGTGGATTTGGAAAAAG 58.958 40.000 4.28 0.00 41.36 2.27
4764 6524 5.519927 CCGAATATGTGGATTTGGAAAAAGC 59.480 40.000 0.00 0.00 41.36 3.51
4765 6525 6.332630 CGAATATGTGGATTTGGAAAAAGCT 58.667 36.000 0.00 0.00 0.00 3.74
4766 6526 6.254157 CGAATATGTGGATTTGGAAAAAGCTG 59.746 38.462 0.00 0.00 0.00 4.24
4767 6527 6.855763 ATATGTGGATTTGGAAAAAGCTGA 57.144 33.333 0.00 0.00 0.00 4.26
4768 6528 5.549742 ATGTGGATTTGGAAAAAGCTGAA 57.450 34.783 0.00 0.00 0.00 3.02
4769 6529 5.549742 TGTGGATTTGGAAAAAGCTGAAT 57.450 34.783 0.00 0.00 0.00 2.57
4770 6530 5.927819 TGTGGATTTGGAAAAAGCTGAATT 58.072 33.333 0.00 0.00 0.00 2.17
4771 6531 6.355747 TGTGGATTTGGAAAAAGCTGAATTT 58.644 32.000 0.00 0.00 0.00 1.82
4772 6532 6.260493 TGTGGATTTGGAAAAAGCTGAATTTG 59.740 34.615 0.00 0.00 0.00 2.32
4773 6533 5.239087 TGGATTTGGAAAAAGCTGAATTTGC 59.761 36.000 0.00 0.00 0.00 3.68
4774 6534 5.239087 GGATTTGGAAAAAGCTGAATTTGCA 59.761 36.000 9.14 9.14 35.48 4.08
4775 6535 6.238703 GGATTTGGAAAAAGCTGAATTTGCAA 60.239 34.615 17.13 17.13 42.54 4.08
4777 6537 6.506500 TTGGAAAAAGCTGAATTTGCAAAA 57.493 29.167 17.19 0.00 41.71 2.44
4778 6538 6.506500 TGGAAAAAGCTGAATTTGCAAAAA 57.493 29.167 17.19 4.23 34.55 1.94
4779 6539 6.553524 TGGAAAAAGCTGAATTTGCAAAAAG 58.446 32.000 17.19 14.59 34.55 2.27
4780 6540 6.150809 TGGAAAAAGCTGAATTTGCAAAAAGT 59.849 30.769 17.19 4.45 34.55 2.66
4781 6541 7.028962 GGAAAAAGCTGAATTTGCAAAAAGTT 58.971 30.769 17.19 6.05 0.00 2.66
4782 6542 7.218773 GGAAAAAGCTGAATTTGCAAAAAGTTC 59.781 33.333 17.19 15.48 0.00 3.01
4783 6543 6.740411 AAAGCTGAATTTGCAAAAAGTTCA 57.260 29.167 17.19 18.99 0.00 3.18
4784 6544 5.723492 AGCTGAATTTGCAAAAAGTTCAC 57.277 34.783 17.19 14.46 0.00 3.18
4785 6545 5.177326 AGCTGAATTTGCAAAAAGTTCACA 58.823 33.333 17.19 7.77 0.00 3.58
4786 6546 5.642919 AGCTGAATTTGCAAAAAGTTCACAA 59.357 32.000 17.19 0.00 0.00 3.33
4787 6547 6.149142 AGCTGAATTTGCAAAAAGTTCACAAA 59.851 30.769 17.19 0.00 34.97 2.83
4788 6548 6.968335 GCTGAATTTGCAAAAAGTTCACAAAT 59.032 30.769 17.19 0.00 41.40 2.32
4793 6553 9.857957 AATTTGCAAAAAGTTCACAAATTCATT 57.142 22.222 17.19 0.00 43.70 2.57
4794 6554 9.857957 ATTTGCAAAAAGTTCACAAATTCATTT 57.142 22.222 17.19 0.00 37.60 2.32
4795 6555 9.688592 TTTGCAAAAAGTTCACAAATTCATTTT 57.311 22.222 10.02 0.00 0.00 1.82
4796 6556 9.688592 TTGCAAAAAGTTCACAAATTCATTTTT 57.311 22.222 0.00 0.00 0.00 1.94
4822 6582 7.953158 TTTTGCGGATTTGAATAAATGTTCA 57.047 28.000 0.00 0.00 36.66 3.18
4823 6583 6.942886 TTGCGGATTTGAATAAATGTTCAC 57.057 33.333 0.00 0.00 37.80 3.18
4824 6584 5.092105 TGCGGATTTGAATAAATGTTCACG 58.908 37.500 0.00 0.00 37.80 4.35
4825 6585 5.106515 TGCGGATTTGAATAAATGTTCACGA 60.107 36.000 0.00 0.00 37.80 4.35
4826 6586 5.797934 GCGGATTTGAATAAATGTTCACGAA 59.202 36.000 0.00 0.00 37.80 3.85
4827 6587 6.472163 GCGGATTTGAATAAATGTTCACGAAT 59.528 34.615 0.00 0.00 37.80 3.34
4828 6588 7.009174 GCGGATTTGAATAAATGTTCACGAATT 59.991 33.333 0.00 0.00 37.80 2.17
4829 6589 8.859156 CGGATTTGAATAAATGTTCACGAATTT 58.141 29.630 0.00 0.00 37.80 1.82
4840 6600 9.703892 AAATGTTCACGAATTTATGGATTGAAA 57.296 25.926 0.00 0.00 0.00 2.69
4841 6601 9.703892 AATGTTCACGAATTTATGGATTGAAAA 57.296 25.926 0.00 0.00 0.00 2.29
4842 6602 9.703892 ATGTTCACGAATTTATGGATTGAAAAA 57.296 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.069500 CGTCCAAGCCGGTAAACAAAG 60.069 52.381 1.90 0.00 35.57 2.77
37 38 1.894756 TGTTTTCCCGTCCAAGCCG 60.895 57.895 0.00 0.00 0.00 5.52
43 45 3.934457 ATTGAATGTGTTTTCCCGTCC 57.066 42.857 0.00 0.00 0.00 4.79
55 57 0.527565 GCTGCCGACCAATTGAATGT 59.472 50.000 7.12 0.00 0.00 2.71
60 62 1.656818 ATTCCGCTGCCGACCAATTG 61.657 55.000 0.00 0.00 36.29 2.32
79 81 7.778382 TCCAGTGCTGATAATCTACAGTAAGTA 59.222 37.037 0.02 0.00 36.62 2.24
80 82 6.607600 TCCAGTGCTGATAATCTACAGTAAGT 59.392 38.462 0.02 0.00 36.62 2.24
81 83 6.920758 GTCCAGTGCTGATAATCTACAGTAAG 59.079 42.308 0.02 0.00 36.62 2.34
82 84 6.607600 AGTCCAGTGCTGATAATCTACAGTAA 59.392 38.462 0.02 0.00 36.62 2.24
102 104 2.502538 CGGGAGGGTGTAATTAAGTCCA 59.497 50.000 0.00 0.00 0.00 4.02
103 105 3.189618 CGGGAGGGTGTAATTAAGTCC 57.810 52.381 0.00 0.00 0.00 3.85
147 150 0.603569 GTTCGTCCTCTTCTGCTCCA 59.396 55.000 0.00 0.00 0.00 3.86
152 155 2.320367 CTTGTCGTTCGTCCTCTTCTG 58.680 52.381 0.00 0.00 0.00 3.02
186 189 9.645059 AAAAGGAAATTTAGCATCTTTCTAAGC 57.355 29.630 0.00 0.00 0.00 3.09
210 213 6.431722 TCCTCCTTTTCTCTTCCTTCAAAAA 58.568 36.000 0.00 0.00 0.00 1.94
211 214 6.013554 TCCTCCTTTTCTCTTCCTTCAAAA 57.986 37.500 0.00 0.00 0.00 2.44
219 246 4.202367 TGTTCACCTCCTCCTTTTCTCTTC 60.202 45.833 0.00 0.00 0.00 2.87
227 254 1.059913 CACCTGTTCACCTCCTCCTT 58.940 55.000 0.00 0.00 0.00 3.36
229 256 1.056660 TTCACCTGTTCACCTCCTCC 58.943 55.000 0.00 0.00 0.00 4.30
245 272 1.335496 GCGGTAGCACCAAAAGTTTCA 59.665 47.619 6.21 0.00 44.35 2.69
268 295 6.042552 TCCCATTAGCAAAAGGTTTCATTTCA 59.957 34.615 0.00 0.00 0.00 2.69
292 319 4.550422 GAGAAAAATGCCTCTGGTGTTTC 58.450 43.478 0.00 0.00 0.00 2.78
304 331 2.166459 GCTTGGGTAGGGAGAAAAATGC 59.834 50.000 0.00 0.00 0.00 3.56
320 347 1.027357 AGTGTTCACTGCTTGCTTGG 58.973 50.000 4.58 0.00 0.00 3.61
368 395 2.456443 GGGGAATCTCTGGAGGCCC 61.456 68.421 0.00 12.37 35.44 5.80
398 425 4.520492 ACAGATTACAAAACCAGAAGCAGG 59.480 41.667 0.00 0.00 0.00 4.85
414 441 0.179468 GCTTGGGGGCGTACAGATTA 59.821 55.000 0.00 0.00 0.00 1.75
416 443 2.590092 GCTTGGGGGCGTACAGAT 59.410 61.111 0.00 0.00 0.00 2.90
417 444 3.712907 GGCTTGGGGGCGTACAGA 61.713 66.667 0.00 0.00 0.00 3.41
418 445 4.796495 GGGCTTGGGGGCGTACAG 62.796 72.222 0.00 0.00 41.87 2.74
429 465 4.619320 TGGGTGGCAAGGGGCTTG 62.619 66.667 0.00 0.00 43.57 4.01
492 528 1.206578 GGACACATGCGTTTCACCG 59.793 57.895 0.00 0.00 0.00 4.94
500 536 1.132199 GTACTCGACGGACACATGCG 61.132 60.000 0.00 0.00 46.59 4.73
509 545 2.270257 TGGGGTGTGTACTCGACGG 61.270 63.158 0.00 0.00 0.00 4.79
534 570 1.557651 GTCTCCTCGGCGTTGTTATC 58.442 55.000 6.85 0.00 0.00 1.75
535 571 0.179145 CGTCTCCTCGGCGTTGTTAT 60.179 55.000 6.85 0.00 0.00 1.89
536 572 1.210931 CGTCTCCTCGGCGTTGTTA 59.789 57.895 6.85 0.00 0.00 2.41
537 573 1.518056 TACGTCTCCTCGGCGTTGTT 61.518 55.000 6.85 0.00 39.64 2.83
538 574 1.919956 CTACGTCTCCTCGGCGTTGT 61.920 60.000 6.85 0.00 39.64 3.32
539 575 1.226323 CTACGTCTCCTCGGCGTTG 60.226 63.158 6.85 0.75 39.64 4.10
542 578 2.513204 TCCTACGTCTCCTCGGCG 60.513 66.667 0.00 0.00 34.94 6.46
558 594 2.823154 AGCCTCTGTCTTGTCTGTACTC 59.177 50.000 0.00 0.00 0.00 2.59
607 643 6.592607 TGGGAGTAAATAAAGTCGTGATCAAC 59.407 38.462 0.00 0.00 0.00 3.18
644 680 2.213499 ACAAAAGGTCGCAAGTCAGAG 58.787 47.619 0.00 0.00 39.48 3.35
654 690 1.262151 CGGTGGTGTAACAAAAGGTCG 59.738 52.381 0.00 0.00 39.98 4.79
674 720 2.280797 TGACACGGAGCTTGGTGC 60.281 61.111 15.55 10.26 43.29 5.01
681 730 1.135199 TCGGTTAATCTGACACGGAGC 60.135 52.381 0.00 0.00 0.00 4.70
727 776 2.127758 GTTGTCCGTTTCTGCGCG 60.128 61.111 0.00 0.00 0.00 6.86
730 779 0.591659 GGAAGGTTGTCCGTTTCTGC 59.408 55.000 0.00 0.00 39.05 4.26
800 849 3.426309 TAGGTAGCTCGGGTCGGGG 62.426 68.421 0.00 0.00 0.00 5.73
806 855 1.310904 GAGAGTGTAGGTAGCTCGGG 58.689 60.000 0.00 0.00 34.69 5.14
807 856 0.938713 CGAGAGTGTAGGTAGCTCGG 59.061 60.000 0.00 0.00 43.25 4.63
916 975 2.825836 ACTAGCAGCAATGCCGGC 60.826 61.111 22.73 22.73 34.90 6.13
917 976 2.475466 CCACTAGCAGCAATGCCGG 61.475 63.158 0.00 0.00 34.90 6.13
918 977 1.434622 CTCCACTAGCAGCAATGCCG 61.435 60.000 0.00 0.00 34.90 5.69
919 978 1.099879 CCTCCACTAGCAGCAATGCC 61.100 60.000 0.00 0.00 34.90 4.40
920 979 0.393537 ACCTCCACTAGCAGCAATGC 60.394 55.000 0.00 0.00 0.00 3.56
921 980 1.376543 CACCTCCACTAGCAGCAATG 58.623 55.000 0.00 0.00 0.00 2.82
936 995 2.074948 CCTCCTATGGCAGCCACCT 61.075 63.158 19.10 4.09 35.80 4.00
937 996 2.512896 CCTCCTATGGCAGCCACC 59.487 66.667 19.10 0.00 35.80 4.61
940 999 1.054406 TACACCCTCCTATGGCAGCC 61.054 60.000 3.66 3.66 0.00 4.85
941 1000 0.394565 CTACACCCTCCTATGGCAGC 59.605 60.000 0.00 0.00 0.00 5.25
942 1001 0.394565 GCTACACCCTCCTATGGCAG 59.605 60.000 0.00 0.00 0.00 4.85
943 1002 0.031111 AGCTACACCCTCCTATGGCA 60.031 55.000 0.00 0.00 0.00 4.92
944 1003 1.132500 AAGCTACACCCTCCTATGGC 58.868 55.000 0.00 0.00 0.00 4.40
945 1004 1.417890 CCAAGCTACACCCTCCTATGG 59.582 57.143 0.00 0.00 0.00 2.74
946 1005 1.202698 GCCAAGCTACACCCTCCTATG 60.203 57.143 0.00 0.00 0.00 2.23
947 1006 1.132500 GCCAAGCTACACCCTCCTAT 58.868 55.000 0.00 0.00 0.00 2.57
1055 1143 2.356313 ACAGCTCGTTGGTCAGCG 60.356 61.111 0.83 0.83 40.84 5.18
1551 1657 4.803426 GTGGCCTCGTCCAGCTCG 62.803 72.222 3.32 0.00 36.67 5.03
1665 1771 0.588252 CGCACCTGTTGTTGAGAAGG 59.412 55.000 0.00 0.00 35.82 3.46
1689 1795 1.071987 CTGGTCTGCTCTGTTGGCA 59.928 57.895 0.00 0.00 38.10 4.92
1690 1796 0.673022 CTCTGGTCTGCTCTGTTGGC 60.673 60.000 0.00 0.00 0.00 4.52
1691 1797 0.673022 GCTCTGGTCTGCTCTGTTGG 60.673 60.000 0.00 0.00 0.00 3.77
1737 1867 3.594134 CCAAGAAACACAAAGGCAAACA 58.406 40.909 0.00 0.00 0.00 2.83
1784 1914 1.985116 GAACTCCCTCTCCGCCTGT 60.985 63.158 0.00 0.00 0.00 4.00
1897 2071 1.480545 ACGGTGTCGATCCATCATCAA 59.519 47.619 9.62 0.00 40.11 2.57
1907 2081 0.949105 GGCACAAAGACGGTGTCGAT 60.949 55.000 0.00 0.00 37.67 3.59
1936 2110 2.364002 GGTAGGTGAGATTGAGAGGAGC 59.636 54.545 0.00 0.00 0.00 4.70
2115 2296 4.596585 ACCCACCCTTTGGCCGTG 62.597 66.667 0.00 0.00 45.37 4.94
2118 2299 2.200092 TTCACCCACCCTTTGGCC 59.800 61.111 0.00 0.00 45.37 5.36
2138 2319 3.642705 TCAAAGACGGCGATGATAGATG 58.357 45.455 16.62 1.44 0.00 2.90
2139 2320 4.489810 GATCAAAGACGGCGATGATAGAT 58.510 43.478 16.62 9.50 32.90 1.98
2140 2321 3.609409 CGATCAAAGACGGCGATGATAGA 60.609 47.826 16.62 4.43 32.90 1.98
2141 2322 2.658802 CGATCAAAGACGGCGATGATAG 59.341 50.000 16.62 13.46 32.90 2.08
2142 2323 2.607038 CCGATCAAAGACGGCGATGATA 60.607 50.000 16.62 0.00 42.55 2.15
2143 2324 1.491670 CGATCAAAGACGGCGATGAT 58.508 50.000 16.62 16.90 35.33 2.45
2144 2325 0.527600 CCGATCAAAGACGGCGATGA 60.528 55.000 16.62 12.68 42.55 2.92
2145 2326 1.927210 CCGATCAAAGACGGCGATG 59.073 57.895 16.62 7.16 42.55 3.84
2146 2327 4.420143 CCGATCAAAGACGGCGAT 57.580 55.556 16.62 0.00 42.55 4.58
2151 2332 2.890474 CCCGGCCGATCAAAGACG 60.890 66.667 30.73 5.91 0.00 4.18
2152 2333 1.814169 GACCCGGCCGATCAAAGAC 60.814 63.158 30.73 5.01 0.00 3.01
2154 2335 2.513897 GGACCCGGCCGATCAAAG 60.514 66.667 30.73 8.54 0.00 2.77
2188 2369 3.185188 CAGATCAAGATCGCCATTAACCG 59.815 47.826 4.54 0.00 42.48 4.44
2201 2382 4.141274 TCCTGAAACCAAACCAGATCAAGA 60.141 41.667 0.00 0.00 0.00 3.02
2203 2384 4.177537 TCCTGAAACCAAACCAGATCAA 57.822 40.909 0.00 0.00 0.00 2.57
2388 2578 6.060136 GGAAATATGGAGGTACTACCCAAAC 58.940 44.000 1.19 0.00 39.75 2.93
2397 2587 8.197439 CCAAAAATGAAGGAAATATGGAGGTAC 58.803 37.037 0.00 0.00 0.00 3.34
2402 2592 6.405538 GTGCCAAAAATGAAGGAAATATGGA 58.594 36.000 0.00 0.00 0.00 3.41
2403 2593 5.585844 GGTGCCAAAAATGAAGGAAATATGG 59.414 40.000 0.00 0.00 0.00 2.74
2405 2595 6.625532 AGGTGCCAAAAATGAAGGAAATAT 57.374 33.333 0.00 0.00 0.00 1.28
2407 2597 4.980339 AGGTGCCAAAAATGAAGGAAAT 57.020 36.364 0.00 0.00 0.00 2.17
2408 2598 4.769345 AAGGTGCCAAAAATGAAGGAAA 57.231 36.364 0.00 0.00 0.00 3.13
2412 2602 5.469421 TGCATTTAAGGTGCCAAAAATGAAG 59.531 36.000 21.79 6.30 40.24 3.02
2414 2604 4.965814 TGCATTTAAGGTGCCAAAAATGA 58.034 34.783 21.79 11.06 40.24 2.57
2415 2605 5.163733 GGATGCATTTAAGGTGCCAAAAATG 60.164 40.000 16.97 16.97 41.83 2.32
2416 2606 4.943093 GGATGCATTTAAGGTGCCAAAAAT 59.057 37.500 0.00 0.33 41.83 1.82
2417 2607 4.202398 TGGATGCATTTAAGGTGCCAAAAA 60.202 37.500 0.00 0.00 41.83 1.94
2418 2608 3.326006 TGGATGCATTTAAGGTGCCAAAA 59.674 39.130 0.00 0.00 41.83 2.44
2419 2609 2.902486 TGGATGCATTTAAGGTGCCAAA 59.098 40.909 0.00 0.00 41.83 3.28
2420 2610 2.533916 TGGATGCATTTAAGGTGCCAA 58.466 42.857 0.00 0.00 41.83 4.52
2421 2611 2.228545 TGGATGCATTTAAGGTGCCA 57.771 45.000 0.00 0.00 41.83 4.92
2422 2612 2.287788 CGATGGATGCATTTAAGGTGCC 60.288 50.000 0.00 0.00 41.83 5.01
2429 2619 6.292150 TGTATTACACCGATGGATGCATTTA 58.708 36.000 0.00 0.00 0.00 1.40
2432 2622 4.350368 TGTATTACACCGATGGATGCAT 57.650 40.909 0.00 0.00 0.00 3.96
2449 2639 6.424509 CACAACTCACATTTTTGGCAATGTAT 59.575 34.615 0.00 0.00 44.08 2.29
2458 2648 7.760131 AATTCAGACACAACTCACATTTTTG 57.240 32.000 0.00 0.00 0.00 2.44
2459 2649 8.034215 TCAAATTCAGACACAACTCACATTTTT 58.966 29.630 0.00 0.00 0.00 1.94
2492 2683 1.901591 TGCCAAAAAGAGCAGAGGAG 58.098 50.000 0.00 0.00 33.08 3.69
2607 2799 2.478890 CGTAGTCGACCGGGCATCT 61.479 63.158 8.76 7.37 39.71 2.90
2648 2840 0.176680 ACACATTCCGAGCTAGCCTG 59.823 55.000 12.13 3.70 0.00 4.85
2650 2842 0.461961 AGACACATTCCGAGCTAGCC 59.538 55.000 12.13 1.79 0.00 3.93
2659 2851 3.560068 ACAGACGAAAACAGACACATTCC 59.440 43.478 0.00 0.00 0.00 3.01
2690 2882 2.502142 TGGTTGAGCTGATTCTGCAT 57.498 45.000 16.56 3.36 0.00 3.96
2691 2883 2.089201 CATGGTTGAGCTGATTCTGCA 58.911 47.619 16.56 0.00 0.00 4.41
2692 2884 1.404391 CCATGGTTGAGCTGATTCTGC 59.596 52.381 2.57 7.40 0.00 4.26
2711 2903 1.898574 CACCCACAGGACACAAGCC 60.899 63.158 0.00 0.00 36.73 4.35
2721 2913 1.277273 TGAAGAGAGATGCACCCACAG 59.723 52.381 0.00 0.00 0.00 3.66
2742 2934 2.568956 TCCACCAGATTCACCTGAAGAG 59.431 50.000 0.00 0.00 37.48 2.85
2743 2935 2.568956 CTCCACCAGATTCACCTGAAGA 59.431 50.000 0.00 0.00 37.48 2.87
2744 2936 2.304180 ACTCCACCAGATTCACCTGAAG 59.696 50.000 0.00 0.00 37.48 3.02
2745 2937 2.038952 CACTCCACCAGATTCACCTGAA 59.961 50.000 0.00 0.00 36.29 3.02
2746 2938 1.625315 CACTCCACCAGATTCACCTGA 59.375 52.381 0.00 0.00 36.29 3.86
2747 2939 1.339438 CCACTCCACCAGATTCACCTG 60.339 57.143 0.00 0.00 0.00 4.00
2748 2940 0.987294 CCACTCCACCAGATTCACCT 59.013 55.000 0.00 0.00 0.00 4.00
2803 2995 2.203788 AGCTTCGGGTCCAGGACA 60.204 61.111 21.75 0.00 33.68 4.02
2806 2998 4.785453 GGCAGCTTCGGGTCCAGG 62.785 72.222 0.00 0.00 0.00 4.45
2836 3028 0.322906 CCTTCTTCAGGGCCTTGGAC 60.323 60.000 15.86 0.00 39.39 4.02
2959 3151 4.475135 GAAGCGGGGAGGCTCACC 62.475 72.222 26.43 26.43 43.93 4.02
2969 3161 4.099573 TGATAAAGAGGTAGAAGAAGCGGG 59.900 45.833 0.00 0.00 0.00 6.13
2971 3163 6.507900 TGATGATAAAGAGGTAGAAGAAGCG 58.492 40.000 0.00 0.00 0.00 4.68
2979 3171 9.474920 GAGATTGACTTGATGATAAAGAGGTAG 57.525 37.037 0.00 0.00 0.00 3.18
3008 3203 1.279527 TTGGTACGAGCAAACGAGCG 61.280 55.000 5.12 0.00 40.15 5.03
3021 3216 7.167968 GGTTTTCCAGAAAATTTACGTTGGTAC 59.832 37.037 8.68 0.00 41.64 3.34
3043 3238 3.551846 AGACGTGGAATTGACTTGGTTT 58.448 40.909 0.00 0.00 0.00 3.27
3063 3258 1.831389 CGCGTGGATTCGGGCATAAG 61.831 60.000 0.00 0.00 37.01 1.73
3064 3259 1.885388 CGCGTGGATTCGGGCATAA 60.885 57.895 0.00 0.00 37.01 1.90
3065 3260 2.094757 ATCGCGTGGATTCGGGCATA 62.095 55.000 5.77 0.00 42.09 3.14
3068 3263 2.895372 AATCGCGTGGATTCGGGC 60.895 61.111 5.77 0.00 41.57 6.13
3125 3328 1.327460 CAGGCATTTACACACCGATCG 59.673 52.381 8.51 8.51 0.00 3.69
3126 3329 2.627945 TCAGGCATTTACACACCGATC 58.372 47.619 0.00 0.00 0.00 3.69
3211 3414 1.143073 CACCCTGCTATTCTAACCCCC 59.857 57.143 0.00 0.00 0.00 5.40
3228 3431 2.432510 ACTAGTAATCAGAGCCAGCACC 59.567 50.000 0.00 0.00 0.00 5.01
3251 3454 1.048601 TGGTCCAAGGTCAGACACTC 58.951 55.000 2.17 0.00 34.58 3.51
3252 3455 1.417890 CTTGGTCCAAGGTCAGACACT 59.582 52.381 22.23 0.00 37.77 3.55
3253 3456 1.884235 CTTGGTCCAAGGTCAGACAC 58.116 55.000 22.23 0.00 37.77 3.67
3320 3523 2.558795 GTTCAGAGAGCACAGTCAGGTA 59.441 50.000 0.00 0.00 0.00 3.08
3321 3524 1.342819 GTTCAGAGAGCACAGTCAGGT 59.657 52.381 0.00 0.00 0.00 4.00
3322 3525 1.617850 AGTTCAGAGAGCACAGTCAGG 59.382 52.381 0.00 0.00 0.00 3.86
3392 3595 2.443958 TGGTGATCTCGAGGTCATCT 57.556 50.000 33.00 4.64 0.00 2.90
3474 3678 2.523015 CAAAACAGCATCGGATCAAGC 58.477 47.619 0.00 0.00 0.00 4.01
3501 3705 2.807967 GTGTTCAGTGTGCTTATGCTGA 59.192 45.455 1.96 0.00 40.48 4.26
3502 3706 2.549329 TGTGTTCAGTGTGCTTATGCTG 59.451 45.455 1.96 0.00 40.48 4.41
3507 3711 6.930731 TCATACTATGTGTTCAGTGTGCTTA 58.069 36.000 0.00 0.00 34.82 3.09
3516 3720 8.149647 TGCATATGTCATCATACTATGTGTTCA 58.850 33.333 4.29 1.30 39.03 3.18
3517 3721 8.538409 TGCATATGTCATCATACTATGTGTTC 57.462 34.615 4.29 0.00 39.03 3.18
3519 3723 8.943002 CATTGCATATGTCATCATACTATGTGT 58.057 33.333 4.29 0.00 39.03 3.72
3520 3724 8.943002 ACATTGCATATGTCATCATACTATGTG 58.057 33.333 4.29 0.00 39.03 3.21
3525 3729 9.645059 GTACTACATTGCATATGTCATCATACT 57.355 33.333 14.94 0.00 39.03 2.12
3526 3730 9.645059 AGTACTACATTGCATATGTCATCATAC 57.355 33.333 14.94 11.75 39.03 2.39
3528 3732 9.212641 GAAGTACTACATTGCATATGTCATCAT 57.787 33.333 14.94 3.33 38.00 2.45
3529 3733 7.657354 GGAAGTACTACATTGCATATGTCATCA 59.343 37.037 14.94 0.00 33.76 3.07
3530 3734 7.875041 AGGAAGTACTACATTGCATATGTCATC 59.125 37.037 14.94 6.51 33.76 2.92
3531 3735 7.739825 AGGAAGTACTACATTGCATATGTCAT 58.260 34.615 14.94 9.19 33.76 3.06
3532 3736 7.069950 AGAGGAAGTACTACATTGCATATGTCA 59.930 37.037 14.94 0.11 33.76 3.58
3533 3737 7.437748 AGAGGAAGTACTACATTGCATATGTC 58.562 38.462 14.94 0.00 33.76 3.06
3534 3738 7.366847 AGAGGAAGTACTACATTGCATATGT 57.633 36.000 15.56 15.56 36.13 2.29
3535 3739 9.579768 GATAGAGGAAGTACTACATTGCATATG 57.420 37.037 0.00 0.00 0.00 1.78
3536 3740 8.754080 GGATAGAGGAAGTACTACATTGCATAT 58.246 37.037 0.00 0.00 0.00 1.78
3537 3741 7.178628 GGGATAGAGGAAGTACTACATTGCATA 59.821 40.741 0.00 0.00 0.00 3.14
3538 3742 6.014156 GGGATAGAGGAAGTACTACATTGCAT 60.014 42.308 0.00 0.00 0.00 3.96
3539 3743 5.304614 GGGATAGAGGAAGTACTACATTGCA 59.695 44.000 0.00 0.00 0.00 4.08
3540 3744 5.304614 TGGGATAGAGGAAGTACTACATTGC 59.695 44.000 0.00 0.00 0.00 3.56
3541 3745 6.978674 TGGGATAGAGGAAGTACTACATTG 57.021 41.667 0.00 0.00 0.00 2.82
3542 3746 9.845214 ATTATGGGATAGAGGAAGTACTACATT 57.155 33.333 0.00 0.00 0.00 2.71
3583 3787 9.999009 CCGTCTCGTAATATAATATAAAGAGCA 57.001 33.333 0.00 0.00 0.00 4.26
3590 3794 9.896645 ACTTCCTCCGTCTCGTAATATAATATA 57.103 33.333 0.00 0.00 0.00 0.86
3591 3795 8.804912 ACTTCCTCCGTCTCGTAATATAATAT 57.195 34.615 0.00 0.00 0.00 1.28
3592 3796 9.896645 ATACTTCCTCCGTCTCGTAATATAATA 57.103 33.333 0.00 0.00 0.00 0.98
3593 3797 8.804912 ATACTTCCTCCGTCTCGTAATATAAT 57.195 34.615 0.00 0.00 0.00 1.28
3594 3798 9.896645 ATATACTTCCTCCGTCTCGTAATATAA 57.103 33.333 0.00 0.00 0.00 0.98
3597 3801 9.322773 CATATATACTTCCTCCGTCTCGTAATA 57.677 37.037 0.00 0.00 0.00 0.98
3598 3802 7.828223 ACATATATACTTCCTCCGTCTCGTAAT 59.172 37.037 0.00 0.00 0.00 1.89
3599 3803 7.164122 ACATATATACTTCCTCCGTCTCGTAA 58.836 38.462 0.00 0.00 0.00 3.18
3600 3804 6.705302 ACATATATACTTCCTCCGTCTCGTA 58.295 40.000 0.00 0.00 0.00 3.43
3601 3805 5.558818 ACATATATACTTCCTCCGTCTCGT 58.441 41.667 0.00 0.00 0.00 4.18
3602 3806 6.497785 AACATATATACTTCCTCCGTCTCG 57.502 41.667 0.00 0.00 0.00 4.04
3603 3807 8.024285 CAGAAACATATATACTTCCTCCGTCTC 58.976 40.741 3.46 0.00 0.00 3.36
3604 3808 7.524038 GCAGAAACATATATACTTCCTCCGTCT 60.524 40.741 3.46 0.00 0.00 4.18
3605 3809 6.586844 GCAGAAACATATATACTTCCTCCGTC 59.413 42.308 3.46 0.00 0.00 4.79
3606 3810 6.267928 AGCAGAAACATATATACTTCCTCCGT 59.732 38.462 0.00 0.00 0.00 4.69
3607 3811 6.587990 CAGCAGAAACATATATACTTCCTCCG 59.412 42.308 0.00 0.00 0.00 4.63
3608 3812 7.445945 ACAGCAGAAACATATATACTTCCTCC 58.554 38.462 0.00 0.00 0.00 4.30
3609 3813 7.327275 CGACAGCAGAAACATATATACTTCCTC 59.673 40.741 0.00 0.00 0.00 3.71
3610 3814 7.148641 CGACAGCAGAAACATATATACTTCCT 58.851 38.462 0.00 0.00 0.00 3.36
3611 3815 6.924060 ACGACAGCAGAAACATATATACTTCC 59.076 38.462 0.00 0.00 0.00 3.46
3612 3816 7.932120 ACGACAGCAGAAACATATATACTTC 57.068 36.000 0.00 0.00 0.00 3.01
3613 3817 7.866393 GGTACGACAGCAGAAACATATATACTT 59.134 37.037 0.00 0.00 0.00 2.24
3614 3818 7.368833 GGTACGACAGCAGAAACATATATACT 58.631 38.462 0.00 0.00 0.00 2.12
3615 3819 7.564044 GGTACGACAGCAGAAACATATATAC 57.436 40.000 0.00 0.00 0.00 1.47
3659 3863 6.424032 ACTAAGTCCTGGTTTCTGAAACTTT 58.576 36.000 26.93 15.91 41.14 2.66
3715 3921 4.692625 CAGAGACGGTCAAAGAATTGTGAT 59.307 41.667 11.27 0.00 37.79 3.06
3721 3927 2.672478 CGAGCAGAGACGGTCAAAGAAT 60.672 50.000 11.27 0.00 32.88 2.40
3724 3932 1.347817 GCGAGCAGAGACGGTCAAAG 61.348 60.000 11.27 0.29 32.88 2.77
3729 3937 3.753434 CCTGCGAGCAGAGACGGT 61.753 66.667 24.93 0.00 46.30 4.83
3734 3942 3.691744 GACGGTCCTGCGAGCAGAG 62.692 68.421 24.93 15.13 46.30 3.35
3735 3943 3.749064 GACGGTCCTGCGAGCAGA 61.749 66.667 24.93 9.47 46.30 4.26
3793 4001 0.250513 ATTCTGTCACCGGCTTCCTC 59.749 55.000 0.00 0.00 0.00 3.71
3859 4067 4.308458 TGGAACCTGGACGGCGTG 62.308 66.667 21.19 5.16 35.61 5.34
3893 4101 2.786495 CCTAGGACGTGCGAGCCAT 61.786 63.158 11.66 0.00 0.00 4.40
3894 4102 3.449227 CCTAGGACGTGCGAGCCA 61.449 66.667 11.66 0.00 0.00 4.75
3895 4103 4.208686 CCCTAGGACGTGCGAGCC 62.209 72.222 11.48 0.00 0.00 4.70
3896 4104 2.502692 AAACCCTAGGACGTGCGAGC 62.503 60.000 11.48 0.00 0.00 5.03
3897 4105 0.037605 AAAACCCTAGGACGTGCGAG 60.038 55.000 11.48 10.20 0.00 5.03
3898 4106 0.393820 AAAAACCCTAGGACGTGCGA 59.606 50.000 11.48 0.00 0.00 5.10
3992 4201 2.295349 GGGAGTAAGAACGACACTGACA 59.705 50.000 0.00 0.00 0.00 3.58
3996 4205 1.613836 ACGGGAGTAAGAACGACACT 58.386 50.000 0.00 0.00 44.60 3.55
4000 4209 2.608752 GCAGAAACGGGAGTAAGAACGA 60.609 50.000 0.00 0.00 46.69 3.85
4146 4355 3.691118 GGCAAGCTATGTCAATCACAGAA 59.309 43.478 0.00 0.00 38.85 3.02
4186 4395 6.730960 AACGTTCTGACACAAGAGTAAAAA 57.269 33.333 0.00 0.00 0.00 1.94
4220 4429 6.313905 AGAACTCACAGTTTTGTACACAAGAG 59.686 38.462 0.00 1.21 38.80 2.85
4247 4456 6.316390 AGACTCATATTTAAAAACGGAGGCAG 59.684 38.462 14.13 0.00 31.37 4.85
4249 4458 6.679327 AGACTCATATTTAAAAACGGAGGC 57.321 37.500 11.65 9.50 0.00 4.70
4250 4459 9.908152 AAAAAGACTCATATTTAAAAACGGAGG 57.092 29.630 11.65 0.00 0.00 4.30
4277 4486 8.514594 CCGTATGCAATCCATATTAAAATCTGT 58.485 33.333 0.00 0.00 38.60 3.41
4278 4487 8.729756 TCCGTATGCAATCCATATTAAAATCTG 58.270 33.333 0.00 0.00 38.60 2.90
4279 4488 8.862325 TCCGTATGCAATCCATATTAAAATCT 57.138 30.769 0.00 0.00 38.60 2.40
4280 4489 9.507280 CATCCGTATGCAATCCATATTAAAATC 57.493 33.333 0.00 0.00 38.60 2.17
4281 4490 9.023962 ACATCCGTATGCAATCCATATTAAAAT 57.976 29.630 0.00 0.00 38.60 1.82
4282 4491 8.296000 CACATCCGTATGCAATCCATATTAAAA 58.704 33.333 0.00 0.00 38.60 1.52
4283 4492 7.446931 ACACATCCGTATGCAATCCATATTAAA 59.553 33.333 0.00 0.00 38.60 1.52
4284 4493 6.939730 ACACATCCGTATGCAATCCATATTAA 59.060 34.615 0.00 0.00 38.60 1.40
4285 4494 6.472016 ACACATCCGTATGCAATCCATATTA 58.528 36.000 0.00 0.00 38.60 0.98
4286 4495 5.316167 ACACATCCGTATGCAATCCATATT 58.684 37.500 0.00 0.00 38.60 1.28
4287 4496 4.910195 ACACATCCGTATGCAATCCATAT 58.090 39.130 0.00 0.00 38.60 1.78
4288 4497 4.350368 ACACATCCGTATGCAATCCATA 57.650 40.909 0.00 0.00 36.50 2.74
4289 4498 3.213206 ACACATCCGTATGCAATCCAT 57.787 42.857 0.00 0.00 36.50 3.41
4290 4499 2.708216 ACACATCCGTATGCAATCCA 57.292 45.000 0.00 0.00 36.50 3.41
4291 4500 5.577164 GTCTATACACATCCGTATGCAATCC 59.423 44.000 0.00 0.00 36.50 3.01
4292 4501 6.390721 AGTCTATACACATCCGTATGCAATC 58.609 40.000 0.00 0.00 36.50 2.67
4293 4502 6.346477 AGTCTATACACATCCGTATGCAAT 57.654 37.500 0.00 0.00 36.50 3.56
4294 4503 5.784578 AGTCTATACACATCCGTATGCAA 57.215 39.130 0.00 0.00 36.50 4.08
4295 4504 7.462571 AATAGTCTATACACATCCGTATGCA 57.537 36.000 0.00 0.00 36.50 3.96
4296 4505 8.758633 AAAATAGTCTATACACATCCGTATGC 57.241 34.615 0.00 0.00 36.50 3.14
4300 4509 9.352191 ACTCTAAAATAGTCTATACACATCCGT 57.648 33.333 0.00 0.00 0.00 4.69
4301 4510 9.613957 CACTCTAAAATAGTCTATACACATCCG 57.386 37.037 0.00 0.00 0.00 4.18
4325 4534 6.902341 TGAAGCAAAATGAGTGAATCTACAC 58.098 36.000 0.00 0.00 40.60 2.90
4326 4535 7.692460 ATGAAGCAAAATGAGTGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
4327 4536 9.661187 CATATGAAGCAAAATGAGTGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
4328 4537 8.347771 GCATATGAAGCAAAATGAGTGAATCTA 58.652 33.333 6.97 0.00 0.00 1.98
4329 4538 7.147966 TGCATATGAAGCAAAATGAGTGAATCT 60.148 33.333 6.97 0.00 39.39 2.40
4330 4539 6.976349 TGCATATGAAGCAAAATGAGTGAATC 59.024 34.615 6.97 0.00 39.39 2.52
4331 4540 6.869695 TGCATATGAAGCAAAATGAGTGAAT 58.130 32.000 6.97 0.00 39.39 2.57
4332 4541 6.071784 ACTGCATATGAAGCAAAATGAGTGAA 60.072 34.615 10.93 0.00 42.17 3.18
4333 4542 5.416639 ACTGCATATGAAGCAAAATGAGTGA 59.583 36.000 10.93 0.00 42.17 3.41
4334 4543 5.647589 ACTGCATATGAAGCAAAATGAGTG 58.352 37.500 10.93 0.00 42.17 3.51
4335 4544 5.163581 GGACTGCATATGAAGCAAAATGAGT 60.164 40.000 10.93 0.00 42.17 3.41
4336 4545 5.279384 GGACTGCATATGAAGCAAAATGAG 58.721 41.667 10.93 0.00 42.17 2.90
4337 4546 4.201940 CGGACTGCATATGAAGCAAAATGA 60.202 41.667 10.93 0.00 42.17 2.57
4338 4547 4.039703 CGGACTGCATATGAAGCAAAATG 58.960 43.478 10.93 0.00 42.17 2.32
4339 4548 3.489738 GCGGACTGCATATGAAGCAAAAT 60.490 43.478 10.93 0.00 45.45 1.82
4340 4549 2.159393 GCGGACTGCATATGAAGCAAAA 60.159 45.455 10.93 0.00 45.45 2.44
4341 4550 1.401552 GCGGACTGCATATGAAGCAAA 59.598 47.619 10.93 0.00 45.45 3.68
4342 4551 1.016627 GCGGACTGCATATGAAGCAA 58.983 50.000 10.93 0.00 45.45 3.91
4343 4552 2.694065 GCGGACTGCATATGAAGCA 58.306 52.632 10.93 0.00 45.45 3.91
4354 4563 1.813513 AAAGATTCCAGTGCGGACTG 58.186 50.000 28.19 28.19 46.36 3.51
4355 4564 3.695830 TTAAAGATTCCAGTGCGGACT 57.304 42.857 2.68 2.68 46.36 3.85
4356 4565 4.000988 TCTTTAAAGATTCCAGTGCGGAC 58.999 43.478 13.99 0.00 46.36 4.79
4357 4566 4.280436 TCTTTAAAGATTCCAGTGCGGA 57.720 40.909 13.99 0.00 44.40 5.54
4358 4567 5.371115 TTTCTTTAAAGATTCCAGTGCGG 57.629 39.130 18.37 0.00 34.49 5.69
4359 4568 7.873739 AAATTTCTTTAAAGATTCCAGTGCG 57.126 32.000 18.37 0.00 34.49 5.34
4376 4585 9.780186 CTCCCTTCGTCCTAAATATAAATTTCT 57.220 33.333 0.00 0.00 36.67 2.52
4377 4586 9.557061 ACTCCCTTCGTCCTAAATATAAATTTC 57.443 33.333 0.00 0.00 36.67 2.17
4380 4589 9.377238 ACTACTCCCTTCGTCCTAAATATAAAT 57.623 33.333 0.00 0.00 0.00 1.40
4381 4590 8.773033 ACTACTCCCTTCGTCCTAAATATAAA 57.227 34.615 0.00 0.00 0.00 1.40
4382 4591 8.773033 AACTACTCCCTTCGTCCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
4383 4592 8.773033 AAACTACTCCCTTCGTCCTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
4384 4593 7.672122 AAACTACTCCCTTCGTCCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
4385 4594 7.398332 AGAAAACTACTCCCTTCGTCCTAAATA 59.602 37.037 0.00 0.00 0.00 1.40
4386 4595 6.212993 AGAAAACTACTCCCTTCGTCCTAAAT 59.787 38.462 0.00 0.00 0.00 1.40
4387 4596 5.541484 AGAAAACTACTCCCTTCGTCCTAAA 59.459 40.000 0.00 0.00 0.00 1.85
4388 4597 5.082425 AGAAAACTACTCCCTTCGTCCTAA 58.918 41.667 0.00 0.00 0.00 2.69
4389 4598 4.670765 AGAAAACTACTCCCTTCGTCCTA 58.329 43.478 0.00 0.00 0.00 2.94
4390 4599 3.508426 AGAAAACTACTCCCTTCGTCCT 58.492 45.455 0.00 0.00 0.00 3.85
4391 4600 3.957591 AGAAAACTACTCCCTTCGTCC 57.042 47.619 0.00 0.00 0.00 4.79
4392 4601 5.136816 AGAAGAAAACTACTCCCTTCGTC 57.863 43.478 0.00 0.00 38.49 4.20
4393 4602 5.070047 TGAAGAAGAAAACTACTCCCTTCGT 59.930 40.000 0.00 0.00 38.49 3.85
4394 4603 5.539048 TGAAGAAGAAAACTACTCCCTTCG 58.461 41.667 0.00 0.00 38.49 3.79
4395 4604 6.128145 GCATGAAGAAGAAAACTACTCCCTTC 60.128 42.308 0.00 0.00 34.92 3.46
4396 4605 5.707764 GCATGAAGAAGAAAACTACTCCCTT 59.292 40.000 0.00 0.00 0.00 3.95
4397 4606 5.013599 AGCATGAAGAAGAAAACTACTCCCT 59.986 40.000 0.00 0.00 0.00 4.20
4398 4607 5.249420 AGCATGAAGAAGAAAACTACTCCC 58.751 41.667 0.00 0.00 0.00 4.30
4399 4608 6.348868 CCAAGCATGAAGAAGAAAACTACTCC 60.349 42.308 0.00 0.00 0.00 3.85
4400 4609 6.428159 TCCAAGCATGAAGAAGAAAACTACTC 59.572 38.462 0.00 0.00 0.00 2.59
4401 4610 6.299141 TCCAAGCATGAAGAAGAAAACTACT 58.701 36.000 0.00 0.00 0.00 2.57
4402 4611 6.560253 TCCAAGCATGAAGAAGAAAACTAC 57.440 37.500 0.00 0.00 0.00 2.73
4403 4612 7.206981 CTTCCAAGCATGAAGAAGAAAACTA 57.793 36.000 0.00 0.00 41.38 2.24
4404 4613 6.081872 CTTCCAAGCATGAAGAAGAAAACT 57.918 37.500 0.00 0.00 41.38 2.66
4448 4699 4.455533 GTCATGCACAGGACTAACAATTGA 59.544 41.667 13.59 0.00 38.89 2.57
4496 4748 8.161425 TCCCATTTTTAGGTAAGTATAGGATGC 58.839 37.037 0.00 0.00 0.00 3.91
4560 6318 3.935203 ACCAAGATATGAGCGTGAAACAG 59.065 43.478 0.00 0.00 35.74 3.16
4639 6399 5.163301 ACAAGTAGTGATATTAGCCACTGGG 60.163 44.000 0.00 0.00 42.88 4.45
4641 6401 7.717568 AGTACAAGTAGTGATATTAGCCACTG 58.282 38.462 0.00 0.00 42.88 3.66
4654 6414 3.181489 GGACGGATGGAGTACAAGTAGTG 60.181 52.174 0.00 0.00 0.00 2.74
4655 6415 3.022406 GGACGGATGGAGTACAAGTAGT 58.978 50.000 0.00 0.00 0.00 2.73
4656 6416 2.361438 GGGACGGATGGAGTACAAGTAG 59.639 54.545 0.00 0.00 0.00 2.57
4657 6417 2.291735 TGGGACGGATGGAGTACAAGTA 60.292 50.000 0.00 0.00 0.00 2.24
4658 6418 1.192428 GGGACGGATGGAGTACAAGT 58.808 55.000 0.00 0.00 0.00 3.16
4659 6419 1.191535 TGGGACGGATGGAGTACAAG 58.808 55.000 0.00 0.00 0.00 3.16
4660 6420 1.646912 TTGGGACGGATGGAGTACAA 58.353 50.000 0.00 0.00 0.00 2.41
4661 6421 1.646912 TTTGGGACGGATGGAGTACA 58.353 50.000 0.00 0.00 0.00 2.90
4662 6422 2.773993 TTTTGGGACGGATGGAGTAC 57.226 50.000 0.00 0.00 0.00 2.73
4711 6471 6.517914 TTTATTCAAATGCGCGAACTTTTT 57.482 29.167 12.10 0.00 0.00 1.94
4712 6472 6.524490 CATTTATTCAAATGCGCGAACTTTT 58.476 32.000 12.10 0.00 43.30 2.27
4713 6473 6.081536 CATTTATTCAAATGCGCGAACTTT 57.918 33.333 12.10 2.27 43.30 2.66
4714 6474 5.685195 CATTTATTCAAATGCGCGAACTT 57.315 34.783 12.10 0.00 43.30 2.66
4724 6484 9.748708 CACATATTCGGGAACATTTATTCAAAT 57.251 29.630 0.00 0.00 34.60 2.32
4725 6485 8.194104 CCACATATTCGGGAACATTTATTCAAA 58.806 33.333 0.00 0.00 0.00 2.69
4726 6486 7.558081 TCCACATATTCGGGAACATTTATTCAA 59.442 33.333 0.00 0.00 0.00 2.69
4727 6487 7.057264 TCCACATATTCGGGAACATTTATTCA 58.943 34.615 0.00 0.00 0.00 2.57
4728 6488 7.504924 TCCACATATTCGGGAACATTTATTC 57.495 36.000 0.00 0.00 0.00 1.75
4729 6489 8.477419 AATCCACATATTCGGGAACATTTATT 57.523 30.769 0.00 0.00 33.73 1.40
4730 6490 8.359642 CAAATCCACATATTCGGGAACATTTAT 58.640 33.333 0.00 0.00 33.73 1.40
4731 6491 7.201866 CCAAATCCACATATTCGGGAACATTTA 60.202 37.037 0.00 0.00 33.73 1.40
4732 6492 6.406849 CCAAATCCACATATTCGGGAACATTT 60.407 38.462 0.00 0.00 33.73 2.32
4733 6493 5.068987 CCAAATCCACATATTCGGGAACATT 59.931 40.000 0.00 0.00 33.73 2.71
4734 6494 4.584325 CCAAATCCACATATTCGGGAACAT 59.416 41.667 0.00 0.00 33.73 2.71
4735 6495 3.951037 CCAAATCCACATATTCGGGAACA 59.049 43.478 0.00 0.00 33.73 3.18
4736 6496 4.204012 TCCAAATCCACATATTCGGGAAC 58.796 43.478 0.00 0.00 33.73 3.62
4737 6497 4.511786 TCCAAATCCACATATTCGGGAA 57.488 40.909 0.00 0.00 33.73 3.97
4738 6498 4.511786 TTCCAAATCCACATATTCGGGA 57.488 40.909 0.00 0.00 34.70 5.14
4739 6499 5.590530 TTTTCCAAATCCACATATTCGGG 57.409 39.130 0.00 0.00 0.00 5.14
4740 6500 5.519927 GCTTTTTCCAAATCCACATATTCGG 59.480 40.000 0.00 0.00 0.00 4.30
4741 6501 6.254157 CAGCTTTTTCCAAATCCACATATTCG 59.746 38.462 0.00 0.00 0.00 3.34
4742 6502 7.322664 TCAGCTTTTTCCAAATCCACATATTC 58.677 34.615 0.00 0.00 0.00 1.75
4743 6503 7.243604 TCAGCTTTTTCCAAATCCACATATT 57.756 32.000 0.00 0.00 0.00 1.28
4744 6504 6.855763 TCAGCTTTTTCCAAATCCACATAT 57.144 33.333 0.00 0.00 0.00 1.78
4745 6505 6.662865 TTCAGCTTTTTCCAAATCCACATA 57.337 33.333 0.00 0.00 0.00 2.29
4746 6506 5.549742 TTCAGCTTTTTCCAAATCCACAT 57.450 34.783 0.00 0.00 0.00 3.21
4747 6507 5.549742 ATTCAGCTTTTTCCAAATCCACA 57.450 34.783 0.00 0.00 0.00 4.17
4748 6508 6.661669 CAAATTCAGCTTTTTCCAAATCCAC 58.338 36.000 0.00 0.00 0.00 4.02
4749 6509 5.239087 GCAAATTCAGCTTTTTCCAAATCCA 59.761 36.000 0.00 0.00 0.00 3.41
4750 6510 5.239087 TGCAAATTCAGCTTTTTCCAAATCC 59.761 36.000 4.71 0.00 0.00 3.01
4751 6511 6.303021 TGCAAATTCAGCTTTTTCCAAATC 57.697 33.333 4.71 0.00 0.00 2.17
4752 6512 6.696441 TTGCAAATTCAGCTTTTTCCAAAT 57.304 29.167 0.00 0.00 0.00 2.32
4753 6513 6.506500 TTTGCAAATTCAGCTTTTTCCAAA 57.493 29.167 8.05 0.00 0.00 3.28
4754 6514 6.506500 TTTTGCAAATTCAGCTTTTTCCAA 57.493 29.167 13.65 0.00 0.00 3.53
4755 6515 6.150809 ACTTTTTGCAAATTCAGCTTTTTCCA 59.849 30.769 13.65 0.00 0.00 3.53
4756 6516 6.554419 ACTTTTTGCAAATTCAGCTTTTTCC 58.446 32.000 13.65 0.00 0.00 3.13
4757 6517 7.750014 TGAACTTTTTGCAAATTCAGCTTTTTC 59.250 29.630 18.29 12.03 0.00 2.29
4758 6518 7.538334 GTGAACTTTTTGCAAATTCAGCTTTTT 59.462 29.630 21.27 6.81 30.25 1.94
4759 6519 7.022979 GTGAACTTTTTGCAAATTCAGCTTTT 58.977 30.769 21.27 7.08 30.25 2.27
4760 6520 6.149142 TGTGAACTTTTTGCAAATTCAGCTTT 59.851 30.769 21.27 7.62 30.25 3.51
4761 6521 5.642919 TGTGAACTTTTTGCAAATTCAGCTT 59.357 32.000 21.27 11.42 30.25 3.74
4762 6522 5.177326 TGTGAACTTTTTGCAAATTCAGCT 58.823 33.333 21.27 7.72 30.25 4.24
4763 6523 5.467902 TGTGAACTTTTTGCAAATTCAGC 57.532 34.783 21.27 16.92 30.25 4.26
4764 6524 8.898983 AATTTGTGAACTTTTTGCAAATTCAG 57.101 26.923 21.27 15.89 42.46 3.02
4767 6527 9.857957 AATGAATTTGTGAACTTTTTGCAAATT 57.142 22.222 13.65 4.29 46.09 1.82
4768 6528 9.857957 AAATGAATTTGTGAACTTTTTGCAAAT 57.142 22.222 13.65 0.00 40.23 2.32
4769 6529 9.688592 AAAATGAATTTGTGAACTTTTTGCAAA 57.311 22.222 8.05 8.05 34.25 3.68
4770 6530 9.688592 AAAAATGAATTTGTGAACTTTTTGCAA 57.311 22.222 0.00 0.00 0.00 4.08
4797 6557 8.279103 GTGAACATTTATTCAAATCCGCAAAAA 58.721 29.630 0.00 0.00 40.22 1.94
4798 6558 7.358765 CGTGAACATTTATTCAAATCCGCAAAA 60.359 33.333 0.00 0.00 40.22 2.44
4799 6559 6.088749 CGTGAACATTTATTCAAATCCGCAAA 59.911 34.615 0.00 0.00 40.22 3.68
4800 6560 5.570973 CGTGAACATTTATTCAAATCCGCAA 59.429 36.000 0.00 0.00 40.22 4.85
4801 6561 5.092105 CGTGAACATTTATTCAAATCCGCA 58.908 37.500 0.00 0.00 40.22 5.69
4802 6562 5.328691 TCGTGAACATTTATTCAAATCCGC 58.671 37.500 0.00 0.00 40.22 5.54
4803 6563 7.969387 ATTCGTGAACATTTATTCAAATCCG 57.031 32.000 0.00 0.00 40.22 4.18
4814 6574 9.703892 TTTCAATCCATAAATTCGTGAACATTT 57.296 25.926 0.00 0.00 0.00 2.32
4815 6575 9.703892 TTTTCAATCCATAAATTCGTGAACATT 57.296 25.926 0.00 0.00 0.00 2.71
4816 6576 9.703892 TTTTTCAATCCATAAATTCGTGAACAT 57.296 25.926 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.