Multiple sequence alignment - TraesCS1A01G271800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G271800 chr1A 100.000 2324 0 0 1 2324 465284810 465282487 0.000000e+00 4292
1 TraesCS1A01G271800 chr1A 90.748 735 43 9 695 1422 465302270 465301554 0.000000e+00 957
2 TraesCS1A01G271800 chr1A 76.685 356 58 17 1935 2278 465140247 465139905 8.540000e-40 174
3 TraesCS1A01G271800 chr1D 88.346 1596 89 45 724 2293 366020656 366019132 0.000000e+00 1827
4 TraesCS1A01G271800 chr1D 85.285 333 37 2 66 398 468720095 468720415 1.330000e-87 333
5 TraesCS1A01G271800 chr1D 93.590 78 3 1 1 76 252469219 252469296 5.250000e-22 115
6 TraesCS1A01G271800 chr1B 89.150 1530 65 38 837 2324 489995075 489993605 0.000000e+00 1812
7 TraesCS1A01G271800 chr1B 82.000 500 64 13 66 556 445589375 445588893 3.600000e-108 401
8 TraesCS1A01G271800 chr1B 92.593 81 4 2 1 79 333442161 333442241 5.250000e-22 115
9 TraesCS1A01G271800 chr1B 93.243 74 4 1 722 795 489995563 489995491 8.780000e-20 108
10 TraesCS1A01G271800 chr7B 87.572 346 29 4 84 429 156438899 156438568 2.800000e-104 388
11 TraesCS1A01G271800 chr3B 81.028 506 70 6 66 558 434674942 434675434 1.690000e-101 379
12 TraesCS1A01G271800 chr4A 86.544 327 33 1 68 394 678815999 678816314 1.320000e-92 350
13 TraesCS1A01G271800 chr4A 93.590 78 3 2 1 76 149421437 149421514 5.250000e-22 115
14 TraesCS1A01G271800 chr6D 84.254 362 42 6 66 425 12458749 12458401 2.860000e-89 339
15 TraesCS1A01G271800 chr3D 83.924 367 43 5 66 429 298459175 298458822 1.030000e-88 337
16 TraesCS1A01G271800 chr2A 82.126 414 54 10 65 477 78187147 78186753 1.030000e-88 337
17 TraesCS1A01G271800 chr2B 84.290 331 39 4 66 395 488640791 488641109 6.240000e-81 311
18 TraesCS1A01G271800 chr2B 83.154 279 28 5 68 344 792857051 792857312 1.070000e-58 237
19 TraesCS1A01G271800 chr5B 82.645 363 47 4 69 429 613017403 613017751 8.070000e-80 307
20 TraesCS1A01G271800 chr5B 81.323 257 29 10 97 353 214105808 214106045 8.480000e-45 191
21 TraesCS1A01G271800 chr5B 92.857 84 4 1 1 82 613286511 613286428 1.130000e-23 121
22 TraesCS1A01G271800 chr5B 92.593 81 3 3 1 79 581077276 581077197 1.890000e-21 113
23 TraesCS1A01G271800 chr7D 87.452 263 31 2 168 429 40578864 40578603 3.750000e-78 302
24 TraesCS1A01G271800 chr3A 80.926 367 48 8 66 428 17373597 17373249 1.060000e-68 270
25 TraesCS1A01G271800 chr4D 84.305 223 22 4 67 288 270612909 270613119 3.030000e-49 206
26 TraesCS1A01G271800 chr6A 97.222 72 2 0 1 72 584745495 584745566 3.140000e-24 122
27 TraesCS1A01G271800 chr6A 90.698 86 5 2 1 85 420394245 420394162 6.790000e-21 111
28 TraesCS1A01G271800 chr6A 89.773 88 6 3 1 85 600313888 600313801 2.440000e-20 110
29 TraesCS1A01G271800 chr4B 91.566 83 6 1 1 83 625279847 625279766 1.890000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G271800 chr1A 465282487 465284810 2323 True 4292 4292 100.0000 1 2324 1 chr1A.!!$R2 2323
1 TraesCS1A01G271800 chr1A 465301554 465302270 716 True 957 957 90.7480 695 1422 1 chr1A.!!$R3 727
2 TraesCS1A01G271800 chr1D 366019132 366020656 1524 True 1827 1827 88.3460 724 2293 1 chr1D.!!$R1 1569
3 TraesCS1A01G271800 chr1B 489993605 489995563 1958 True 960 1812 91.1965 722 2324 2 chr1B.!!$R2 1602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 663 0.040425 CCGAGCGGTTTTGAGGTTTG 60.04 55.0 0.0 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2744 0.179936 CTCATGGTGAGCCTCCTTCC 59.82 60.0 0.0 0.0 37.72 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 7.839680 AACCAATTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
64 65 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
65 66 4.990526 CCTCTAGGGCATATTTCCAACAT 58.009 43.478 0.00 0.00 0.00 2.71
66 67 4.763793 CCTCTAGGGCATATTTCCAACATG 59.236 45.833 0.00 0.00 0.00 3.21
67 68 4.144297 TCTAGGGCATATTTCCAACATGC 58.856 43.478 0.00 0.00 43.43 4.06
68 69 2.749600 AGGGCATATTTCCAACATGCA 58.250 42.857 7.94 0.00 45.45 3.96
69 70 3.311091 AGGGCATATTTCCAACATGCAT 58.689 40.909 7.94 0.00 45.45 3.96
70 71 3.712733 AGGGCATATTTCCAACATGCATT 59.287 39.130 0.00 0.00 45.45 3.56
71 72 4.164604 AGGGCATATTTCCAACATGCATTT 59.835 37.500 0.00 0.00 45.45 2.32
72 73 4.883006 GGGCATATTTCCAACATGCATTTT 59.117 37.500 0.00 0.00 45.45 1.82
73 74 5.357596 GGGCATATTTCCAACATGCATTTTT 59.642 36.000 0.00 0.00 45.45 1.94
90 91 3.780804 TTTTTGAGACCATCCGGAAGA 57.219 42.857 9.01 0.00 35.59 2.87
91 92 4.301072 TTTTTGAGACCATCCGGAAGAT 57.699 40.909 9.01 0.00 35.59 2.40
92 93 3.543680 TTTGAGACCATCCGGAAGATC 57.456 47.619 9.01 0.00 35.59 2.75
93 94 1.032794 TGAGACCATCCGGAAGATCG 58.967 55.000 9.01 0.00 35.59 3.69
94 95 1.319541 GAGACCATCCGGAAGATCGA 58.680 55.000 9.01 0.00 35.59 3.59
95 96 1.268352 GAGACCATCCGGAAGATCGAG 59.732 57.143 9.01 0.00 35.59 4.04
96 97 1.133761 AGACCATCCGGAAGATCGAGA 60.134 52.381 9.01 0.00 35.59 4.04
97 98 1.681793 GACCATCCGGAAGATCGAGAA 59.318 52.381 9.01 0.00 35.59 2.87
98 99 1.409427 ACCATCCGGAAGATCGAGAAC 59.591 52.381 9.01 0.00 35.59 3.01
99 100 1.269831 CCATCCGGAAGATCGAGAACC 60.270 57.143 9.01 0.00 30.59 3.62
100 101 1.409064 CATCCGGAAGATCGAGAACCA 59.591 52.381 9.01 0.00 30.59 3.67
101 102 1.776662 TCCGGAAGATCGAGAACCAT 58.223 50.000 0.00 0.00 0.00 3.55
102 103 1.409064 TCCGGAAGATCGAGAACCATG 59.591 52.381 0.00 0.00 0.00 3.66
103 104 1.409064 CCGGAAGATCGAGAACCATGA 59.591 52.381 0.00 0.00 0.00 3.07
104 105 2.036475 CCGGAAGATCGAGAACCATGAT 59.964 50.000 0.00 0.00 0.00 2.45
105 106 3.493350 CCGGAAGATCGAGAACCATGATT 60.493 47.826 0.00 0.00 0.00 2.57
106 107 3.738282 CGGAAGATCGAGAACCATGATTC 59.262 47.826 0.00 0.00 0.00 2.52
107 108 3.738282 GGAAGATCGAGAACCATGATTCG 59.262 47.826 0.00 0.00 33.57 3.34
108 109 2.748605 AGATCGAGAACCATGATTCGC 58.251 47.619 0.00 0.00 33.57 4.70
109 110 2.101415 AGATCGAGAACCATGATTCGCA 59.899 45.455 4.31 0.00 33.57 5.10
110 111 1.640428 TCGAGAACCATGATTCGCAC 58.360 50.000 4.31 0.00 33.57 5.34
111 112 1.067213 TCGAGAACCATGATTCGCACA 60.067 47.619 4.31 0.00 33.57 4.57
112 113 1.731709 CGAGAACCATGATTCGCACAA 59.268 47.619 4.31 0.00 33.57 3.33
113 114 2.474526 CGAGAACCATGATTCGCACAAC 60.475 50.000 4.31 0.00 33.57 3.32
114 115 1.812571 AGAACCATGATTCGCACAACC 59.187 47.619 0.00 0.00 33.57 3.77
115 116 1.539388 GAACCATGATTCGCACAACCA 59.461 47.619 0.00 0.00 0.00 3.67
116 117 1.614996 ACCATGATTCGCACAACCAA 58.385 45.000 0.00 0.00 0.00 3.67
117 118 1.269448 ACCATGATTCGCACAACCAAC 59.731 47.619 0.00 0.00 0.00 3.77
118 119 1.541147 CCATGATTCGCACAACCAACT 59.459 47.619 0.00 0.00 0.00 3.16
119 120 2.414559 CCATGATTCGCACAACCAACTC 60.415 50.000 0.00 0.00 0.00 3.01
120 121 2.254546 TGATTCGCACAACCAACTCT 57.745 45.000 0.00 0.00 0.00 3.24
121 122 3.394674 TGATTCGCACAACCAACTCTA 57.605 42.857 0.00 0.00 0.00 2.43
122 123 3.325870 TGATTCGCACAACCAACTCTAG 58.674 45.455 0.00 0.00 0.00 2.43
123 124 1.508632 TTCGCACAACCAACTCTAGC 58.491 50.000 0.00 0.00 0.00 3.42
124 125 0.391228 TCGCACAACCAACTCTAGCA 59.609 50.000 0.00 0.00 0.00 3.49
125 126 1.001974 TCGCACAACCAACTCTAGCAT 59.998 47.619 0.00 0.00 0.00 3.79
126 127 1.129251 CGCACAACCAACTCTAGCATG 59.871 52.381 0.00 0.00 0.00 4.06
127 128 2.426522 GCACAACCAACTCTAGCATGA 58.573 47.619 0.00 0.00 0.00 3.07
128 129 3.012518 GCACAACCAACTCTAGCATGAT 58.987 45.455 0.00 0.00 0.00 2.45
129 130 3.064545 GCACAACCAACTCTAGCATGATC 59.935 47.826 0.00 0.00 0.00 2.92
130 131 4.511527 CACAACCAACTCTAGCATGATCT 58.488 43.478 0.00 0.00 0.00 2.75
131 132 4.940046 CACAACCAACTCTAGCATGATCTT 59.060 41.667 0.00 0.00 0.00 2.40
132 133 6.108687 CACAACCAACTCTAGCATGATCTTA 58.891 40.000 0.00 0.00 0.00 2.10
133 134 6.765036 CACAACCAACTCTAGCATGATCTTAT 59.235 38.462 0.00 0.00 0.00 1.73
134 135 7.281774 CACAACCAACTCTAGCATGATCTTATT 59.718 37.037 0.00 0.00 0.00 1.40
135 136 7.281774 ACAACCAACTCTAGCATGATCTTATTG 59.718 37.037 0.00 0.00 0.00 1.90
136 137 7.129457 ACCAACTCTAGCATGATCTTATTGA 57.871 36.000 0.00 0.00 0.00 2.57
137 138 7.215789 ACCAACTCTAGCATGATCTTATTGAG 58.784 38.462 0.00 0.00 0.00 3.02
138 139 6.147492 CCAACTCTAGCATGATCTTATTGAGC 59.853 42.308 0.00 0.00 0.00 4.26
139 140 6.416631 ACTCTAGCATGATCTTATTGAGCA 57.583 37.500 0.00 0.00 45.73 4.26
147 148 3.999001 TGATCTTATTGAGCATCGATGGC 59.001 43.478 26.00 17.68 40.17 4.40
148 149 3.473923 TCTTATTGAGCATCGATGGCA 57.526 42.857 26.00 4.49 40.17 4.92
149 150 3.807553 TCTTATTGAGCATCGATGGCAA 58.192 40.909 26.00 10.37 40.17 4.52
150 151 3.561310 TCTTATTGAGCATCGATGGCAAC 59.439 43.478 26.00 9.89 40.17 4.17
151 152 2.048444 ATTGAGCATCGATGGCAACT 57.952 45.000 26.00 14.55 37.97 3.16
152 153 1.372582 TTGAGCATCGATGGCAACTC 58.627 50.000 26.00 21.67 38.61 3.01
153 154 0.538584 TGAGCATCGATGGCAACTCT 59.461 50.000 26.00 13.47 38.61 3.24
154 155 1.756538 TGAGCATCGATGGCAACTCTA 59.243 47.619 26.00 11.53 38.61 2.43
155 156 2.366590 TGAGCATCGATGGCAACTCTAT 59.633 45.455 26.00 1.99 38.61 1.98
156 157 2.735663 GAGCATCGATGGCAACTCTATG 59.264 50.000 26.00 0.00 37.61 2.23
157 158 2.103771 AGCATCGATGGCAACTCTATGT 59.896 45.455 26.00 0.00 37.61 2.29
158 159 2.222678 GCATCGATGGCAACTCTATGTG 59.777 50.000 26.00 0.00 37.61 3.21
159 160 2.602257 TCGATGGCAACTCTATGTGG 57.398 50.000 0.00 0.00 37.61 4.17
160 161 1.138859 TCGATGGCAACTCTATGTGGG 59.861 52.381 0.00 0.00 37.61 4.61
161 162 1.134401 CGATGGCAACTCTATGTGGGT 60.134 52.381 0.00 0.00 37.61 4.51
162 163 2.292267 GATGGCAACTCTATGTGGGTG 58.708 52.381 0.00 0.00 37.61 4.61
163 164 1.357137 TGGCAACTCTATGTGGGTGA 58.643 50.000 0.00 0.00 37.61 4.02
164 165 1.278985 TGGCAACTCTATGTGGGTGAG 59.721 52.381 0.00 0.00 37.61 3.51
165 166 1.407437 GGCAACTCTATGTGGGTGAGG 60.407 57.143 0.00 0.00 32.58 3.86
166 167 1.407437 GCAACTCTATGTGGGTGAGGG 60.407 57.143 0.00 0.00 32.58 4.30
167 168 1.909302 CAACTCTATGTGGGTGAGGGT 59.091 52.381 0.00 0.00 32.58 4.34
168 169 1.573108 ACTCTATGTGGGTGAGGGTG 58.427 55.000 0.00 0.00 32.58 4.61
169 170 0.833287 CTCTATGTGGGTGAGGGTGG 59.167 60.000 0.00 0.00 0.00 4.61
170 171 0.620410 TCTATGTGGGTGAGGGTGGG 60.620 60.000 0.00 0.00 0.00 4.61
171 172 1.618143 TATGTGGGTGAGGGTGGGG 60.618 63.158 0.00 0.00 0.00 4.96
206 207 9.196139 TCCCCATTTTTATTCATTTCTATTCGT 57.804 29.630 0.00 0.00 0.00 3.85
207 208 9.248291 CCCCATTTTTATTCATTTCTATTCGTG 57.752 33.333 0.00 0.00 0.00 4.35
208 209 9.801873 CCCATTTTTATTCATTTCTATTCGTGT 57.198 29.630 0.00 0.00 0.00 4.49
217 218 8.546597 TTCATTTCTATTCGTGTGAGATTTGA 57.453 30.769 0.00 0.00 0.00 2.69
218 219 8.546597 TCATTTCTATTCGTGTGAGATTTGAA 57.453 30.769 0.00 0.00 0.00 2.69
219 220 8.443160 TCATTTCTATTCGTGTGAGATTTGAAC 58.557 33.333 0.00 0.00 0.00 3.18
220 221 7.722795 TTTCTATTCGTGTGAGATTTGAACA 57.277 32.000 0.00 0.00 0.00 3.18
221 222 7.722795 TTCTATTCGTGTGAGATTTGAACAA 57.277 32.000 0.00 0.00 0.00 2.83
222 223 7.905604 TCTATTCGTGTGAGATTTGAACAAT 57.094 32.000 0.00 0.00 0.00 2.71
223 224 8.322906 TCTATTCGTGTGAGATTTGAACAATT 57.677 30.769 0.00 0.00 0.00 2.32
224 225 8.783093 TCTATTCGTGTGAGATTTGAACAATTT 58.217 29.630 0.00 0.00 0.00 1.82
225 226 7.627585 ATTCGTGTGAGATTTGAACAATTTG 57.372 32.000 0.00 0.00 0.00 2.32
226 227 6.130298 TCGTGTGAGATTTGAACAATTTGT 57.870 33.333 0.00 0.00 0.00 2.83
227 228 6.559810 TCGTGTGAGATTTGAACAATTTGTT 58.440 32.000 14.42 14.42 44.37 2.83
228 229 6.471841 TCGTGTGAGATTTGAACAATTTGTTG 59.528 34.615 19.03 0.99 41.28 3.33
229 230 6.253298 CGTGTGAGATTTGAACAATTTGTTGT 59.747 34.615 19.03 0.00 41.28 3.32
230 231 7.201427 CGTGTGAGATTTGAACAATTTGTTGTT 60.201 33.333 19.03 7.12 46.73 2.83
231 232 7.899330 GTGTGAGATTTGAACAATTTGTTGTTG 59.101 33.333 19.03 0.00 44.37 3.33
232 233 7.601886 TGTGAGATTTGAACAATTTGTTGTTGT 59.398 29.630 19.03 3.47 44.37 3.32
233 234 9.081997 GTGAGATTTGAACAATTTGTTGTTGTA 57.918 29.630 19.03 1.46 44.37 2.41
234 235 9.645059 TGAGATTTGAACAATTTGTTGTTGTAA 57.355 25.926 19.03 6.56 44.37 2.41
293 294 9.762933 AAAACTATTGTTGTATTGTGAATTGCT 57.237 25.926 0.00 0.00 36.39 3.91
294 295 9.762933 AAACTATTGTTGTATTGTGAATTGCTT 57.237 25.926 0.00 0.00 36.39 3.91
295 296 9.762933 AACTATTGTTGTATTGTGAATTGCTTT 57.237 25.926 0.00 0.00 34.71 3.51
296 297 9.762933 ACTATTGTTGTATTGTGAATTGCTTTT 57.237 25.926 0.00 0.00 0.00 2.27
298 299 8.659925 ATTGTTGTATTGTGAATTGCTTTTCA 57.340 26.923 0.00 0.00 33.32 2.69
299 300 7.697352 TGTTGTATTGTGAATTGCTTTTCAG 57.303 32.000 2.66 0.00 36.34 3.02
300 301 7.487484 TGTTGTATTGTGAATTGCTTTTCAGA 58.513 30.769 2.66 0.00 36.34 3.27
301 302 7.434897 TGTTGTATTGTGAATTGCTTTTCAGAC 59.565 33.333 2.66 1.43 36.34 3.51
302 303 6.446318 TGTATTGTGAATTGCTTTTCAGACC 58.554 36.000 2.66 0.00 36.34 3.85
303 304 4.998671 TTGTGAATTGCTTTTCAGACCA 57.001 36.364 2.66 0.00 36.34 4.02
304 305 5.534207 TTGTGAATTGCTTTTCAGACCAT 57.466 34.783 2.66 0.00 36.34 3.55
305 306 5.534207 TGTGAATTGCTTTTCAGACCATT 57.466 34.783 2.66 0.00 36.34 3.16
306 307 5.531634 TGTGAATTGCTTTTCAGACCATTC 58.468 37.500 2.66 0.00 36.34 2.67
307 308 5.068855 TGTGAATTGCTTTTCAGACCATTCA 59.931 36.000 2.66 0.00 36.34 2.57
308 309 6.161381 GTGAATTGCTTTTCAGACCATTCAT 58.839 36.000 2.66 0.00 36.34 2.57
309 310 7.039853 TGTGAATTGCTTTTCAGACCATTCATA 60.040 33.333 2.66 0.00 36.34 2.15
310 311 7.977853 GTGAATTGCTTTTCAGACCATTCATAT 59.022 33.333 2.66 0.00 36.34 1.78
311 312 9.187996 TGAATTGCTTTTCAGACCATTCATATA 57.812 29.630 0.00 0.00 32.07 0.86
315 316 7.864686 TGCTTTTCAGACCATTCATATATTCG 58.135 34.615 0.00 0.00 0.00 3.34
316 317 7.498900 TGCTTTTCAGACCATTCATATATTCGT 59.501 33.333 0.00 0.00 0.00 3.85
317 318 8.988934 GCTTTTCAGACCATTCATATATTCGTA 58.011 33.333 0.00 0.00 0.00 3.43
320 321 9.996554 TTTCAGACCATTCATATATTCGTATGT 57.003 29.630 0.00 0.00 34.44 2.29
321 322 9.996554 TTCAGACCATTCATATATTCGTATGTT 57.003 29.630 0.00 0.00 34.44 2.71
322 323 9.423061 TCAGACCATTCATATATTCGTATGTTG 57.577 33.333 0.00 0.00 34.44 3.33
323 324 9.423061 CAGACCATTCATATATTCGTATGTTGA 57.577 33.333 0.00 0.00 34.44 3.18
324 325 9.996554 AGACCATTCATATATTCGTATGTTGAA 57.003 29.630 0.00 0.00 34.44 2.69
350 351 9.884636 ATTTATATTACGATTCCATTCGATCCA 57.115 29.630 0.31 0.00 41.62 3.41
351 352 9.884636 TTTATATTACGATTCCATTCGATCCAT 57.115 29.630 0.31 0.00 41.62 3.41
357 358 9.884636 TTACGATTCCATTCGATCCATATTATT 57.115 29.630 0.31 0.00 41.62 1.40
358 359 8.201554 ACGATTCCATTCGATCCATATTATTG 57.798 34.615 0.31 0.00 41.62 1.90
359 360 8.040727 ACGATTCCATTCGATCCATATTATTGA 58.959 33.333 0.31 0.00 41.62 2.57
360 361 8.331022 CGATTCCATTCGATCCATATTATTGAC 58.669 37.037 0.00 0.00 41.62 3.18
361 362 9.166173 GATTCCATTCGATCCATATTATTGACA 57.834 33.333 0.00 0.00 0.00 3.58
362 363 9.690913 ATTCCATTCGATCCATATTATTGACAT 57.309 29.630 0.00 0.00 0.00 3.06
363 364 8.496707 TCCATTCGATCCATATTATTGACATG 57.503 34.615 0.00 0.00 0.00 3.21
364 365 8.102676 TCCATTCGATCCATATTATTGACATGT 58.897 33.333 0.00 0.00 0.00 3.21
365 366 8.179615 CCATTCGATCCATATTATTGACATGTG 58.820 37.037 1.15 0.00 0.00 3.21
366 367 8.724229 CATTCGATCCATATTATTGACATGTGT 58.276 33.333 1.15 0.00 0.00 3.72
367 368 9.942850 ATTCGATCCATATTATTGACATGTGTA 57.057 29.630 1.15 0.00 0.00 2.90
368 369 9.771534 TTCGATCCATATTATTGACATGTGTAA 57.228 29.630 1.15 0.00 0.00 2.41
369 370 9.942850 TCGATCCATATTATTGACATGTGTAAT 57.057 29.630 1.15 6.62 0.00 1.89
380 381 8.786937 ATTGACATGTGTAATTTATTCGATGC 57.213 30.769 1.15 0.00 0.00 3.91
381 382 7.552458 TGACATGTGTAATTTATTCGATGCT 57.448 32.000 1.15 0.00 0.00 3.79
382 383 8.655651 TGACATGTGTAATTTATTCGATGCTA 57.344 30.769 1.15 0.00 0.00 3.49
383 384 9.271828 TGACATGTGTAATTTATTCGATGCTAT 57.728 29.630 1.15 0.00 0.00 2.97
384 385 9.533983 GACATGTGTAATTTATTCGATGCTATG 57.466 33.333 1.15 0.00 0.00 2.23
385 386 9.056005 ACATGTGTAATTTATTCGATGCTATGT 57.944 29.630 0.00 0.00 0.00 2.29
397 398 7.542534 TTCGATGCTATGTAAAATTTACGGT 57.457 32.000 10.81 5.38 0.00 4.83
398 399 6.939627 TCGATGCTATGTAAAATTTACGGTG 58.060 36.000 10.81 4.89 0.00 4.94
399 400 6.535865 TCGATGCTATGTAAAATTTACGGTGT 59.464 34.615 10.81 1.09 0.00 4.16
400 401 6.844279 CGATGCTATGTAAAATTTACGGTGTC 59.156 38.462 10.81 4.34 0.00 3.67
401 402 6.097156 TGCTATGTAAAATTTACGGTGTCG 57.903 37.500 10.81 0.00 43.02 4.35
411 412 2.879462 CGGTGTCGTAAGCGCTCC 60.879 66.667 12.06 4.35 38.14 4.70
412 413 2.572284 GGTGTCGTAAGCGCTCCT 59.428 61.111 12.06 0.00 38.14 3.69
413 414 1.805945 GGTGTCGTAAGCGCTCCTG 60.806 63.158 12.06 2.90 38.14 3.86
414 415 2.126071 TGTCGTAAGCGCTCCTGC 60.126 61.111 12.06 0.00 38.14 4.85
430 431 1.511305 TGCGGAACAGATCTCGTCC 59.489 57.895 10.19 10.19 0.00 4.79
431 432 1.227002 GCGGAACAGATCTCGTCCC 60.227 63.158 13.40 3.73 0.00 4.46
432 433 1.945354 GCGGAACAGATCTCGTCCCA 61.945 60.000 13.40 0.00 0.00 4.37
433 434 0.747255 CGGAACAGATCTCGTCCCAT 59.253 55.000 13.40 0.00 0.00 4.00
434 435 1.954382 CGGAACAGATCTCGTCCCATA 59.046 52.381 13.40 0.00 0.00 2.74
435 436 2.361119 CGGAACAGATCTCGTCCCATAA 59.639 50.000 13.40 0.00 0.00 1.90
436 437 3.551046 CGGAACAGATCTCGTCCCATAAG 60.551 52.174 13.40 0.00 0.00 1.73
437 438 3.385111 GGAACAGATCTCGTCCCATAAGT 59.615 47.826 9.32 0.00 0.00 2.24
438 439 4.141914 GGAACAGATCTCGTCCCATAAGTT 60.142 45.833 9.32 0.00 0.00 2.66
439 440 5.420409 GAACAGATCTCGTCCCATAAGTTT 58.580 41.667 0.00 0.00 0.00 2.66
440 441 4.759782 ACAGATCTCGTCCCATAAGTTTG 58.240 43.478 0.00 0.00 0.00 2.93
441 442 4.223032 ACAGATCTCGTCCCATAAGTTTGT 59.777 41.667 0.00 0.00 0.00 2.83
442 443 4.568359 CAGATCTCGTCCCATAAGTTTGTG 59.432 45.833 0.00 0.00 0.00 3.33
443 444 3.328382 TCTCGTCCCATAAGTTTGTGG 57.672 47.619 1.04 1.04 38.97 4.17
452 453 5.467035 CCATAAGTTTGTGGGATGTGTTT 57.533 39.130 0.10 0.00 35.98 2.83
453 454 6.582677 CCATAAGTTTGTGGGATGTGTTTA 57.417 37.500 0.10 0.00 35.98 2.01
454 455 6.386654 CCATAAGTTTGTGGGATGTGTTTAC 58.613 40.000 0.10 0.00 35.98 2.01
455 456 4.561735 AAGTTTGTGGGATGTGTTTACG 57.438 40.909 0.00 0.00 0.00 3.18
456 457 3.547746 AGTTTGTGGGATGTGTTTACGT 58.452 40.909 0.00 0.00 0.00 3.57
457 458 3.314080 AGTTTGTGGGATGTGTTTACGTG 59.686 43.478 0.00 0.00 0.00 4.49
458 459 2.912690 TGTGGGATGTGTTTACGTGA 57.087 45.000 0.00 0.00 0.00 4.35
459 460 3.410631 TGTGGGATGTGTTTACGTGAT 57.589 42.857 0.00 0.00 0.00 3.06
460 461 3.331150 TGTGGGATGTGTTTACGTGATC 58.669 45.455 0.00 0.00 0.00 2.92
461 462 3.007506 TGTGGGATGTGTTTACGTGATCT 59.992 43.478 0.00 0.00 0.00 2.75
462 463 3.370978 GTGGGATGTGTTTACGTGATCTG 59.629 47.826 0.00 0.00 0.00 2.90
463 464 3.007506 TGGGATGTGTTTACGTGATCTGT 59.992 43.478 0.00 0.00 0.00 3.41
464 465 4.000988 GGGATGTGTTTACGTGATCTGTT 58.999 43.478 0.00 0.00 0.00 3.16
465 466 4.092968 GGGATGTGTTTACGTGATCTGTTC 59.907 45.833 0.00 0.00 0.00 3.18
466 467 4.092968 GGATGTGTTTACGTGATCTGTTCC 59.907 45.833 0.00 0.00 0.00 3.62
467 468 4.061357 TGTGTTTACGTGATCTGTTCCA 57.939 40.909 0.00 0.00 0.00 3.53
468 469 3.805422 TGTGTTTACGTGATCTGTTCCAC 59.195 43.478 0.00 2.19 0.00 4.02
469 470 3.185797 GTGTTTACGTGATCTGTTCCACC 59.814 47.826 0.00 0.00 0.00 4.61
470 471 2.357327 TTACGTGATCTGTTCCACCG 57.643 50.000 0.00 0.00 0.00 4.94
471 472 0.528924 TACGTGATCTGTTCCACCGG 59.471 55.000 0.00 0.00 0.00 5.28
472 473 1.183030 ACGTGATCTGTTCCACCGGA 61.183 55.000 9.46 0.00 0.00 5.14
473 474 0.458543 CGTGATCTGTTCCACCGGAG 60.459 60.000 9.46 0.00 31.21 4.63
474 475 0.741221 GTGATCTGTTCCACCGGAGC 60.741 60.000 9.46 0.00 33.44 4.70
475 476 1.519455 GATCTGTTCCACCGGAGCG 60.519 63.158 9.46 0.00 35.65 5.03
476 477 3.665675 ATCTGTTCCACCGGAGCGC 62.666 63.158 9.46 0.00 35.65 5.92
487 488 3.416382 GGAGCGCGCACCGTTTAA 61.416 61.111 35.10 0.00 39.71 1.52
488 489 2.552268 GAGCGCGCACCGTTTAAA 59.448 55.556 35.10 0.00 39.71 1.52
489 490 1.082627 GAGCGCGCACCGTTTAAAA 60.083 52.632 35.10 0.00 39.71 1.52
490 491 0.657951 GAGCGCGCACCGTTTAAAAA 60.658 50.000 35.10 0.00 39.71 1.94
491 492 0.659123 AGCGCGCACCGTTTAAAAAG 60.659 50.000 35.10 0.00 39.71 2.27
492 493 0.931202 GCGCGCACCGTTTAAAAAGT 60.931 50.000 29.10 0.00 39.71 2.66
493 494 1.468895 CGCGCACCGTTTAAAAAGTT 58.531 45.000 8.75 0.00 0.00 2.66
494 495 1.847390 CGCGCACCGTTTAAAAAGTTT 59.153 42.857 8.75 0.00 0.00 2.66
495 496 2.279397 CGCGCACCGTTTAAAAAGTTTT 59.721 40.909 8.75 0.00 0.00 2.43
496 497 3.589314 GCGCACCGTTTAAAAAGTTTTG 58.411 40.909 0.30 0.00 0.00 2.44
497 498 3.589314 CGCACCGTTTAAAAAGTTTTGC 58.411 40.909 0.61 0.00 0.00 3.68
498 499 3.542485 CGCACCGTTTAAAAAGTTTTGCC 60.542 43.478 0.61 0.00 0.00 4.52
499 500 3.371285 GCACCGTTTAAAAAGTTTTGCCA 59.629 39.130 0.61 0.00 0.00 4.92
500 501 4.493382 GCACCGTTTAAAAAGTTTTGCCAG 60.493 41.667 0.61 0.00 0.00 4.85
501 502 3.619483 ACCGTTTAAAAAGTTTTGCCAGC 59.381 39.130 0.61 0.00 0.00 4.85
502 503 3.001838 CCGTTTAAAAAGTTTTGCCAGCC 59.998 43.478 0.61 0.00 0.00 4.85
503 504 3.001838 CGTTTAAAAAGTTTTGCCAGCCC 59.998 43.478 0.61 0.00 0.00 5.19
504 505 2.920724 TAAAAAGTTTTGCCAGCCCC 57.079 45.000 0.61 0.00 0.00 5.80
505 506 1.212375 AAAAAGTTTTGCCAGCCCCT 58.788 45.000 0.61 0.00 0.00 4.79
506 507 1.212375 AAAAGTTTTGCCAGCCCCTT 58.788 45.000 0.00 0.00 0.00 3.95
507 508 0.469494 AAAGTTTTGCCAGCCCCTTG 59.531 50.000 0.00 0.00 0.00 3.61
508 509 0.398381 AAGTTTTGCCAGCCCCTTGA 60.398 50.000 0.00 0.00 0.00 3.02
509 510 0.398381 AGTTTTGCCAGCCCCTTGAA 60.398 50.000 0.00 0.00 0.00 2.69
510 511 0.249868 GTTTTGCCAGCCCCTTGAAC 60.250 55.000 0.00 0.00 0.00 3.18
511 512 1.743321 TTTTGCCAGCCCCTTGAACG 61.743 55.000 0.00 0.00 0.00 3.95
515 516 2.978010 CAGCCCCTTGAACGCGTT 60.978 61.111 26.97 26.97 0.00 4.84
516 517 2.203294 AGCCCCTTGAACGCGTTT 60.203 55.556 27.32 9.95 0.00 3.60
517 518 1.826487 AGCCCCTTGAACGCGTTTT 60.826 52.632 27.32 3.98 0.00 2.43
518 519 1.660264 GCCCCTTGAACGCGTTTTG 60.660 57.895 27.32 17.73 0.00 2.44
519 520 1.660264 CCCCTTGAACGCGTTTTGC 60.660 57.895 27.32 14.11 41.47 3.68
539 540 4.955774 GACGTCCGGTTGCGTGGT 62.956 66.667 21.42 3.02 41.70 4.16
540 541 4.955774 ACGTCCGGTTGCGTGGTC 62.956 66.667 17.35 0.00 40.03 4.02
541 542 4.657824 CGTCCGGTTGCGTGGTCT 62.658 66.667 0.00 0.00 0.00 3.85
542 543 3.041940 GTCCGGTTGCGTGGTCTG 61.042 66.667 0.00 0.00 0.00 3.51
543 544 4.980805 TCCGGTTGCGTGGTCTGC 62.981 66.667 0.00 0.00 0.00 4.26
544 545 4.988598 CCGGTTGCGTGGTCTGCT 62.989 66.667 0.00 0.00 0.00 4.24
545 546 2.048597 CGGTTGCGTGGTCTGCTA 60.049 61.111 0.00 0.00 0.00 3.49
546 547 2.094659 CGGTTGCGTGGTCTGCTAG 61.095 63.158 0.00 0.00 0.00 3.42
547 548 1.292223 GGTTGCGTGGTCTGCTAGA 59.708 57.895 0.00 0.00 0.00 2.43
548 549 0.737715 GGTTGCGTGGTCTGCTAGAG 60.738 60.000 0.00 0.00 0.00 2.43
549 550 0.243907 GTTGCGTGGTCTGCTAGAGA 59.756 55.000 0.00 0.00 0.00 3.10
550 551 1.134965 GTTGCGTGGTCTGCTAGAGAT 60.135 52.381 0.00 0.00 31.63 2.75
551 552 0.457443 TGCGTGGTCTGCTAGAGATG 59.543 55.000 0.00 0.00 31.63 2.90
552 553 0.873743 GCGTGGTCTGCTAGAGATGC 60.874 60.000 0.00 0.00 31.63 3.91
553 554 0.743688 CGTGGTCTGCTAGAGATGCT 59.256 55.000 0.00 0.00 31.63 3.79
554 555 1.268999 CGTGGTCTGCTAGAGATGCTC 60.269 57.143 0.00 0.00 31.63 4.26
555 556 2.031120 GTGGTCTGCTAGAGATGCTCT 58.969 52.381 0.00 2.22 43.83 4.09
556 557 3.218453 GTGGTCTGCTAGAGATGCTCTA 58.782 50.000 0.00 4.30 41.50 2.43
557 558 3.634448 GTGGTCTGCTAGAGATGCTCTAA 59.366 47.826 5.75 0.00 41.74 2.10
558 559 4.280677 GTGGTCTGCTAGAGATGCTCTAAT 59.719 45.833 5.75 0.00 41.74 1.73
559 560 4.280425 TGGTCTGCTAGAGATGCTCTAATG 59.720 45.833 5.75 0.00 41.74 1.90
560 561 4.236935 GTCTGCTAGAGATGCTCTAATGC 58.763 47.826 5.75 7.06 41.74 3.56
561 562 3.057666 TCTGCTAGAGATGCTCTAATGCG 60.058 47.826 5.75 4.41 41.74 4.73
562 563 2.887152 TGCTAGAGATGCTCTAATGCGA 59.113 45.455 5.75 0.00 41.74 5.10
563 564 3.057666 TGCTAGAGATGCTCTAATGCGAG 60.058 47.826 5.75 0.00 41.74 5.03
568 569 4.110493 GCTCTAATGCGAGCGGTT 57.890 55.556 1.27 0.00 45.91 4.44
569 570 2.384203 GCTCTAATGCGAGCGGTTT 58.616 52.632 1.27 0.00 45.91 3.27
570 571 0.727398 GCTCTAATGCGAGCGGTTTT 59.273 50.000 1.27 0.00 45.91 2.43
571 572 1.529826 GCTCTAATGCGAGCGGTTTTG 60.530 52.381 1.27 0.00 45.91 2.44
572 573 1.999735 CTCTAATGCGAGCGGTTTTGA 59.000 47.619 0.00 0.00 0.00 2.69
573 574 2.415168 CTCTAATGCGAGCGGTTTTGAA 59.585 45.455 0.00 0.00 0.00 2.69
574 575 2.415168 TCTAATGCGAGCGGTTTTGAAG 59.585 45.455 0.00 0.00 0.00 3.02
575 576 1.234821 AATGCGAGCGGTTTTGAAGA 58.765 45.000 0.00 0.00 0.00 2.87
576 577 1.453155 ATGCGAGCGGTTTTGAAGAT 58.547 45.000 0.00 0.00 0.00 2.40
577 578 0.516877 TGCGAGCGGTTTTGAAGATG 59.483 50.000 0.00 0.00 0.00 2.90
578 579 0.796312 GCGAGCGGTTTTGAAGATGA 59.204 50.000 0.00 0.00 0.00 2.92
579 580 1.398390 GCGAGCGGTTTTGAAGATGAT 59.602 47.619 0.00 0.00 0.00 2.45
580 581 2.789092 GCGAGCGGTTTTGAAGATGATG 60.789 50.000 0.00 0.00 0.00 3.07
581 582 2.223112 CGAGCGGTTTTGAAGATGATGG 60.223 50.000 0.00 0.00 0.00 3.51
582 583 2.749621 GAGCGGTTTTGAAGATGATGGT 59.250 45.455 0.00 0.00 0.00 3.55
583 584 3.157087 AGCGGTTTTGAAGATGATGGTT 58.843 40.909 0.00 0.00 0.00 3.67
584 585 4.331968 AGCGGTTTTGAAGATGATGGTTA 58.668 39.130 0.00 0.00 0.00 2.85
585 586 4.156008 AGCGGTTTTGAAGATGATGGTTAC 59.844 41.667 0.00 0.00 0.00 2.50
586 587 4.083003 GCGGTTTTGAAGATGATGGTTACA 60.083 41.667 0.00 0.00 0.00 2.41
587 588 5.563867 GCGGTTTTGAAGATGATGGTTACAA 60.564 40.000 0.00 0.00 0.00 2.41
588 589 6.442952 CGGTTTTGAAGATGATGGTTACAAA 58.557 36.000 0.00 0.00 0.00 2.83
589 590 7.090173 CGGTTTTGAAGATGATGGTTACAAAT 58.910 34.615 0.00 0.00 0.00 2.32
590 591 7.273381 CGGTTTTGAAGATGATGGTTACAAATC 59.727 37.037 0.00 0.00 0.00 2.17
591 592 8.087750 GGTTTTGAAGATGATGGTTACAAATCA 58.912 33.333 3.11 3.11 37.23 2.57
592 593 9.474920 GTTTTGAAGATGATGGTTACAAATCAA 57.525 29.630 4.49 0.00 36.44 2.57
594 595 9.474920 TTTGAAGATGATGGTTACAAATCAAAC 57.525 29.630 4.49 3.28 36.44 2.93
595 596 8.175925 TGAAGATGATGGTTACAAATCAAACA 57.824 30.769 4.49 0.00 36.44 2.83
596 597 8.637099 TGAAGATGATGGTTACAAATCAAACAA 58.363 29.630 4.49 0.00 36.44 2.83
597 598 9.474920 GAAGATGATGGTTACAAATCAAACAAA 57.525 29.630 4.49 0.00 36.44 2.83
599 600 9.643693 AGATGATGGTTACAAATCAAACAAATC 57.356 29.630 4.49 0.00 36.44 2.17
600 601 9.421806 GATGATGGTTACAAATCAAACAAATCA 57.578 29.630 4.49 0.00 36.44 2.57
601 602 9.775854 ATGATGGTTACAAATCAAACAAATCAA 57.224 25.926 4.49 0.00 36.44 2.57
602 603 9.605275 TGATGGTTACAAATCAAACAAATCAAA 57.395 25.926 0.00 0.00 32.15 2.69
603 604 9.862585 GATGGTTACAAATCAAACAAATCAAAC 57.137 29.630 0.00 0.00 0.00 2.93
604 605 8.202745 TGGTTACAAATCAAACAAATCAAACC 57.797 30.769 0.00 0.00 33.69 3.27
605 606 7.010552 TGGTTACAAATCAAACAAATCAAACCG 59.989 33.333 0.00 0.00 35.39 4.44
606 607 7.222999 GGTTACAAATCAAACAAATCAAACCGA 59.777 33.333 0.00 0.00 0.00 4.69
607 608 6.582437 ACAAATCAAACAAATCAAACCGAC 57.418 33.333 0.00 0.00 0.00 4.79
608 609 6.337356 ACAAATCAAACAAATCAAACCGACT 58.663 32.000 0.00 0.00 0.00 4.18
609 610 6.255453 ACAAATCAAACAAATCAAACCGACTG 59.745 34.615 0.00 0.00 0.00 3.51
610 611 4.300189 TCAAACAAATCAAACCGACTGG 57.700 40.909 0.00 0.00 42.84 4.00
624 625 4.404507 CCGACTGGTTAGTTCAATGTTG 57.595 45.455 0.00 0.00 37.25 3.33
625 626 4.062293 CCGACTGGTTAGTTCAATGTTGA 58.938 43.478 0.00 0.00 37.25 3.18
626 627 4.513692 CCGACTGGTTAGTTCAATGTTGAA 59.486 41.667 4.16 4.16 44.31 2.69
639 640 7.712264 TTCAATGTTGAAATGTGGACAAATC 57.288 32.000 5.75 0.00 43.62 2.17
640 641 6.814043 TCAATGTTGAAATGTGGACAAATCA 58.186 32.000 0.00 0.00 33.55 2.57
641 642 7.270779 TCAATGTTGAAATGTGGACAAATCAA 58.729 30.769 6.54 6.54 34.39 2.57
642 643 7.767659 TCAATGTTGAAATGTGGACAAATCAAA 59.232 29.630 10.46 4.81 36.75 2.69
643 644 6.900568 TGTTGAAATGTGGACAAATCAAAC 57.099 33.333 10.46 7.36 36.75 2.93
644 645 5.814705 TGTTGAAATGTGGACAAATCAAACC 59.185 36.000 10.46 0.00 36.75 3.27
645 646 4.615949 TGAAATGTGGACAAATCAAACCG 58.384 39.130 0.00 0.00 0.00 4.44
646 647 4.339530 TGAAATGTGGACAAATCAAACCGA 59.660 37.500 0.00 0.00 0.00 4.69
647 648 4.503741 AATGTGGACAAATCAAACCGAG 57.496 40.909 0.00 0.00 0.00 4.63
648 649 1.606668 TGTGGACAAATCAAACCGAGC 59.393 47.619 0.00 0.00 0.00 5.03
649 650 0.871722 TGGACAAATCAAACCGAGCG 59.128 50.000 0.00 0.00 0.00 5.03
650 651 0.168128 GGACAAATCAAACCGAGCGG 59.832 55.000 7.48 7.48 42.03 5.52
660 661 4.058797 CCGAGCGGTTTTGAGGTT 57.941 55.556 0.00 0.00 0.00 3.50
661 662 2.327228 CCGAGCGGTTTTGAGGTTT 58.673 52.632 0.00 0.00 0.00 3.27
662 663 0.040425 CCGAGCGGTTTTGAGGTTTG 60.040 55.000 0.00 0.00 0.00 2.93
663 664 0.660300 CGAGCGGTTTTGAGGTTTGC 60.660 55.000 0.00 0.00 0.00 3.68
664 665 0.668535 GAGCGGTTTTGAGGTTTGCT 59.331 50.000 0.00 0.00 0.00 3.91
665 666 0.385390 AGCGGTTTTGAGGTTTGCTG 59.615 50.000 0.00 0.00 0.00 4.41
666 667 0.102300 GCGGTTTTGAGGTTTGCTGT 59.898 50.000 0.00 0.00 0.00 4.40
667 668 1.470805 GCGGTTTTGAGGTTTGCTGTT 60.471 47.619 0.00 0.00 0.00 3.16
668 669 2.192624 CGGTTTTGAGGTTTGCTGTTG 58.807 47.619 0.00 0.00 0.00 3.33
669 670 1.933181 GGTTTTGAGGTTTGCTGTTGC 59.067 47.619 0.00 0.00 40.20 4.17
670 671 1.933181 GTTTTGAGGTTTGCTGTTGCC 59.067 47.619 0.00 0.00 38.71 4.52
671 672 1.189752 TTTGAGGTTTGCTGTTGCCA 58.810 45.000 0.00 0.00 38.71 4.92
672 673 1.189752 TTGAGGTTTGCTGTTGCCAA 58.810 45.000 0.00 0.00 38.71 4.52
673 674 1.189752 TGAGGTTTGCTGTTGCCAAA 58.810 45.000 0.00 0.00 38.71 3.28
674 675 1.552337 TGAGGTTTGCTGTTGCCAAAA 59.448 42.857 0.00 0.00 38.71 2.44
675 676 2.027745 TGAGGTTTGCTGTTGCCAAAAA 60.028 40.909 0.00 0.00 38.71 1.94
702 703 5.308825 AGAGTACACAAAAGTCCATGGAAG 58.691 41.667 18.20 6.92 0.00 3.46
720 721 1.442017 GGCACGTCGCAAATTGGTC 60.442 57.895 11.20 0.00 45.17 4.02
784 785 0.250209 CAGGGCATCTCAGGATTCCG 60.250 60.000 0.00 0.00 36.36 4.30
786 787 1.599240 GGCATCTCAGGATTCCGGC 60.599 63.158 0.00 0.00 0.00 6.13
791 792 1.153086 CTCAGGATTCCGGCCCAAG 60.153 63.158 0.00 0.00 0.00 3.61
907 1288 3.997021 ACCAACACTTCATCAGATCGAAC 59.003 43.478 0.00 0.00 0.00 3.95
908 1289 3.372206 CCAACACTTCATCAGATCGAACC 59.628 47.826 0.00 0.00 0.00 3.62
909 1290 2.881074 ACACTTCATCAGATCGAACCG 58.119 47.619 0.00 0.00 0.00 4.44
910 1291 2.492088 ACACTTCATCAGATCGAACCGA 59.508 45.455 0.00 0.00 41.13 4.69
911 1292 3.111838 CACTTCATCAGATCGAACCGAG 58.888 50.000 0.00 0.00 39.91 4.63
912 1293 2.123342 CTTCATCAGATCGAACCGAGC 58.877 52.381 0.00 0.00 42.87 5.03
913 1294 0.385751 TCATCAGATCGAACCGAGCC 59.614 55.000 0.81 0.00 43.62 4.70
914 1295 0.103026 CATCAGATCGAACCGAGCCA 59.897 55.000 0.81 0.00 43.62 4.75
915 1296 0.387202 ATCAGATCGAACCGAGCCAG 59.613 55.000 0.81 0.00 43.62 4.85
916 1297 0.679960 TCAGATCGAACCGAGCCAGA 60.680 55.000 0.81 0.00 43.62 3.86
917 1298 0.387202 CAGATCGAACCGAGCCAGAT 59.613 55.000 0.81 0.00 43.62 2.90
918 1299 0.671251 AGATCGAACCGAGCCAGATC 59.329 55.000 0.81 0.00 43.62 2.75
919 1300 0.661780 GATCGAACCGAGCCAGATCG 60.662 60.000 0.00 0.00 39.91 3.69
920 1301 1.101635 ATCGAACCGAGCCAGATCGA 61.102 55.000 6.92 3.68 45.56 3.59
921 1302 1.586564 CGAACCGAGCCAGATCGAC 60.587 63.158 6.92 0.00 45.56 4.20
1017 1408 3.508762 GGCGATGTTCTTCTTCTTCGTA 58.491 45.455 0.00 0.00 35.00 3.43
1137 1528 0.608640 TCAAGCTCTTCTTCGTCCCC 59.391 55.000 0.00 0.00 31.27 4.81
1429 1838 6.887013 TCTCAAGACAGTAGTAGTACTAGGG 58.113 44.000 10.38 8.18 37.40 3.53
1445 1854 0.820891 AGGGTTGTGCAGCAGAGTTG 60.821 55.000 0.00 0.00 0.00 3.16
1457 1866 3.431572 CAGCAGAGTTGTCAGTTAGCTTC 59.568 47.826 0.00 0.00 0.00 3.86
1468 1880 1.079503 GTTAGCTTCTGGTTCTGCGG 58.920 55.000 0.00 0.00 0.00 5.69
1479 1891 1.508632 GTTCTGCGGAAGTTGTGCTA 58.491 50.000 8.61 0.00 31.46 3.49
1480 1892 1.871039 GTTCTGCGGAAGTTGTGCTAA 59.129 47.619 8.61 0.00 31.46 3.09
1482 1894 0.517316 CTGCGGAAGTTGTGCTAACC 59.483 55.000 0.00 0.00 0.00 2.85
1485 1897 1.878953 CGGAAGTTGTGCTAACCTGT 58.121 50.000 1.57 0.00 0.00 4.00
1498 1910 5.183140 GTGCTAACCTGTGTGGATGTAAATT 59.817 40.000 0.00 0.00 39.71 1.82
1523 1935 8.789881 TTGGTGAAATGTTTGTAATAAACGAG 57.210 30.769 0.00 0.00 33.05 4.18
1525 1937 8.071368 TGGTGAAATGTTTGTAATAAACGAGAC 58.929 33.333 0.00 0.00 33.05 3.36
1576 1988 5.270083 CGCACACTACACAAAATCTCAAAA 58.730 37.500 0.00 0.00 0.00 2.44
1681 2096 3.935203 ACACAGCTGAATTATGGAAGACG 59.065 43.478 23.35 0.00 0.00 4.18
1691 2106 6.316140 TGAATTATGGAAGACGGAAGAACATG 59.684 38.462 0.00 0.00 0.00 3.21
1695 2110 2.359900 GAAGACGGAAGAACATGGCAT 58.640 47.619 0.00 0.00 0.00 4.40
1696 2111 3.531538 GAAGACGGAAGAACATGGCATA 58.468 45.455 0.00 0.00 0.00 3.14
1697 2112 3.185246 AGACGGAAGAACATGGCATAG 57.815 47.619 0.00 0.00 0.00 2.23
1698 2113 2.766263 AGACGGAAGAACATGGCATAGA 59.234 45.455 0.00 0.00 0.00 1.98
1701 2116 3.134623 ACGGAAGAACATGGCATAGATGA 59.865 43.478 0.00 0.00 0.00 2.92
1702 2117 4.129380 CGGAAGAACATGGCATAGATGAA 58.871 43.478 0.00 0.00 0.00 2.57
1703 2118 4.212847 CGGAAGAACATGGCATAGATGAAG 59.787 45.833 0.00 0.00 0.00 3.02
1704 2119 5.371526 GGAAGAACATGGCATAGATGAAGA 58.628 41.667 0.00 0.00 0.00 2.87
1705 2120 5.824624 GGAAGAACATGGCATAGATGAAGAA 59.175 40.000 0.00 0.00 0.00 2.52
1706 2121 6.238593 GGAAGAACATGGCATAGATGAAGAAC 60.239 42.308 0.00 0.00 0.00 3.01
1707 2122 5.128919 AGAACATGGCATAGATGAAGAACC 58.871 41.667 0.00 0.00 0.00 3.62
1708 2123 4.508551 ACATGGCATAGATGAAGAACCA 57.491 40.909 0.00 0.00 0.00 3.67
1709 2124 4.858850 ACATGGCATAGATGAAGAACCAA 58.141 39.130 0.00 0.00 0.00 3.67
1710 2125 4.885907 ACATGGCATAGATGAAGAACCAAG 59.114 41.667 0.00 0.00 0.00 3.61
1711 2126 4.842531 TGGCATAGATGAAGAACCAAGA 57.157 40.909 0.00 0.00 0.00 3.02
1712 2127 4.517285 TGGCATAGATGAAGAACCAAGAC 58.483 43.478 0.00 0.00 0.00 3.01
1713 2128 4.019411 TGGCATAGATGAAGAACCAAGACA 60.019 41.667 0.00 0.00 0.00 3.41
1714 2129 5.128919 GGCATAGATGAAGAACCAAGACAT 58.871 41.667 0.00 0.00 0.00 3.06
1715 2130 5.008415 GGCATAGATGAAGAACCAAGACATG 59.992 44.000 0.00 0.00 0.00 3.21
1716 2131 5.505324 GCATAGATGAAGAACCAAGACATGC 60.505 44.000 0.00 0.00 0.00 4.06
1717 2132 4.298103 AGATGAAGAACCAAGACATGCT 57.702 40.909 0.00 0.00 0.00 3.79
1718 2133 4.660168 AGATGAAGAACCAAGACATGCTT 58.340 39.130 0.00 0.00 37.29 3.91
1728 2143 4.430137 CAAGACATGCTTGCACATAACT 57.570 40.909 14.20 0.00 46.67 2.24
1734 2149 6.823182 AGACATGCTTGCACATAACTACATAA 59.177 34.615 0.00 0.00 0.00 1.90
1799 2223 2.124695 GGAGCATCGGGGTGGAAC 60.125 66.667 0.00 0.00 34.37 3.62
1802 2226 2.185310 GAGCATCGGGGTGGAACTGT 62.185 60.000 0.00 0.00 36.74 3.55
1833 2257 0.324830 AGCAGGAGGAGGGTACTGTC 60.325 60.000 0.00 0.00 33.62 3.51
1834 2258 1.331399 GCAGGAGGAGGGTACTGTCC 61.331 65.000 6.05 6.05 33.62 4.02
1835 2259 0.336737 CAGGAGGAGGGTACTGTCCT 59.663 60.000 14.32 14.32 42.88 3.85
2271 2704 2.595750 TTCATCCCCCGTTGAATTGT 57.404 45.000 0.00 0.00 0.00 2.71
2293 2735 2.356313 CGCCTGGATCGAATCGGG 60.356 66.667 1.76 10.78 0.00 5.14
2296 2738 2.356313 CTGGATCGAATCGGGGCG 60.356 66.667 1.76 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.533831 CCCTAGAGGCAATAATAAATTGGTTAT 57.466 33.333 0.00 0.00 33.58 1.89
26 27 8.934023 CCCTAGAGGCAATAATAAATTGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
27 28 7.839680 CCCTAGAGGCAATAATAAATTGGTT 57.160 36.000 0.00 0.00 0.00 3.67
43 44 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
44 45 5.954296 CATGTTGGAAATATGCCCTAGAG 57.046 43.478 0.00 0.00 38.58 2.43
70 71 3.780804 TCTTCCGGATGGTCTCAAAAA 57.219 42.857 16.68 0.00 36.30 1.94
71 72 3.678806 CGATCTTCCGGATGGTCTCAAAA 60.679 47.826 23.81 1.91 34.33 2.44
72 73 2.159099 CGATCTTCCGGATGGTCTCAAA 60.159 50.000 23.81 2.58 34.33 2.69
73 74 1.409064 CGATCTTCCGGATGGTCTCAA 59.591 52.381 23.81 3.25 34.33 3.02
74 75 1.032794 CGATCTTCCGGATGGTCTCA 58.967 55.000 23.81 3.92 34.33 3.27
75 76 1.268352 CTCGATCTTCCGGATGGTCTC 59.732 57.143 23.81 14.19 34.33 3.36
76 77 1.133761 TCTCGATCTTCCGGATGGTCT 60.134 52.381 23.81 8.04 34.33 3.85
77 78 1.319541 TCTCGATCTTCCGGATGGTC 58.680 55.000 18.44 18.44 34.33 4.02
78 79 1.409427 GTTCTCGATCTTCCGGATGGT 59.591 52.381 16.68 10.31 34.33 3.55
79 80 1.269831 GGTTCTCGATCTTCCGGATGG 60.270 57.143 16.68 7.95 34.33 3.51
80 81 1.409064 TGGTTCTCGATCTTCCGGATG 59.591 52.381 4.15 8.29 34.33 3.51
81 82 1.776662 TGGTTCTCGATCTTCCGGAT 58.223 50.000 4.15 0.00 37.37 4.18
82 83 1.409064 CATGGTTCTCGATCTTCCGGA 59.591 52.381 0.00 0.00 0.00 5.14
83 84 1.409064 TCATGGTTCTCGATCTTCCGG 59.591 52.381 0.00 0.00 0.00 5.14
84 85 2.871182 TCATGGTTCTCGATCTTCCG 57.129 50.000 0.00 0.00 0.00 4.30
85 86 3.738282 CGAATCATGGTTCTCGATCTTCC 59.262 47.826 16.47 0.00 33.13 3.46
86 87 3.183373 GCGAATCATGGTTCTCGATCTTC 59.817 47.826 16.47 0.00 33.13 2.87
87 88 3.126831 GCGAATCATGGTTCTCGATCTT 58.873 45.455 16.47 0.00 33.13 2.40
88 89 2.101415 TGCGAATCATGGTTCTCGATCT 59.899 45.455 16.47 0.00 33.13 2.75
89 90 2.219674 GTGCGAATCATGGTTCTCGATC 59.780 50.000 16.47 0.73 33.13 3.69
90 91 2.205074 GTGCGAATCATGGTTCTCGAT 58.795 47.619 16.47 0.00 33.13 3.59
91 92 1.067213 TGTGCGAATCATGGTTCTCGA 60.067 47.619 16.47 0.00 33.13 4.04
92 93 1.358877 TGTGCGAATCATGGTTCTCG 58.641 50.000 16.47 6.42 0.00 4.04
93 94 2.159517 GGTTGTGCGAATCATGGTTCTC 60.160 50.000 16.47 9.39 0.00 2.87
94 95 1.812571 GGTTGTGCGAATCATGGTTCT 59.187 47.619 16.47 0.00 0.00 3.01
95 96 1.539388 TGGTTGTGCGAATCATGGTTC 59.461 47.619 8.76 8.76 0.00 3.62
96 97 1.614996 TGGTTGTGCGAATCATGGTT 58.385 45.000 0.00 0.00 0.00 3.67
97 98 1.269448 GTTGGTTGTGCGAATCATGGT 59.731 47.619 0.00 0.00 0.00 3.55
98 99 1.541147 AGTTGGTTGTGCGAATCATGG 59.459 47.619 0.00 0.00 0.00 3.66
99 100 2.485426 AGAGTTGGTTGTGCGAATCATG 59.515 45.455 0.00 0.00 0.00 3.07
100 101 2.783135 AGAGTTGGTTGTGCGAATCAT 58.217 42.857 0.00 0.00 0.00 2.45
101 102 2.254546 AGAGTTGGTTGTGCGAATCA 57.745 45.000 0.00 0.00 0.00 2.57
102 103 2.094417 GCTAGAGTTGGTTGTGCGAATC 59.906 50.000 0.00 0.00 0.00 2.52
103 104 2.076863 GCTAGAGTTGGTTGTGCGAAT 58.923 47.619 0.00 0.00 0.00 3.34
104 105 1.202592 TGCTAGAGTTGGTTGTGCGAA 60.203 47.619 0.00 0.00 0.00 4.70
105 106 0.391228 TGCTAGAGTTGGTTGTGCGA 59.609 50.000 0.00 0.00 0.00 5.10
106 107 1.129251 CATGCTAGAGTTGGTTGTGCG 59.871 52.381 0.00 0.00 0.00 5.34
107 108 2.426522 TCATGCTAGAGTTGGTTGTGC 58.573 47.619 0.00 0.00 0.00 4.57
108 109 4.511527 AGATCATGCTAGAGTTGGTTGTG 58.488 43.478 0.00 0.00 0.00 3.33
109 110 4.833478 AGATCATGCTAGAGTTGGTTGT 57.167 40.909 0.00 0.00 0.00 3.32
110 111 7.496920 TCAATAAGATCATGCTAGAGTTGGTTG 59.503 37.037 0.00 0.00 0.00 3.77
111 112 7.568349 TCAATAAGATCATGCTAGAGTTGGTT 58.432 34.615 0.00 0.00 0.00 3.67
112 113 7.129457 TCAATAAGATCATGCTAGAGTTGGT 57.871 36.000 0.00 0.00 0.00 3.67
113 114 6.147492 GCTCAATAAGATCATGCTAGAGTTGG 59.853 42.308 0.00 0.00 0.00 3.77
114 115 6.704937 TGCTCAATAAGATCATGCTAGAGTTG 59.295 38.462 0.00 0.00 0.00 3.16
115 116 6.824553 TGCTCAATAAGATCATGCTAGAGTT 58.175 36.000 0.00 0.00 0.00 3.01
116 117 6.416631 TGCTCAATAAGATCATGCTAGAGT 57.583 37.500 0.00 0.00 0.00 3.24
117 118 6.253942 CGATGCTCAATAAGATCATGCTAGAG 59.746 42.308 0.00 0.00 33.44 2.43
118 119 6.071728 TCGATGCTCAATAAGATCATGCTAGA 60.072 38.462 0.00 0.00 33.44 2.43
119 120 6.098017 TCGATGCTCAATAAGATCATGCTAG 58.902 40.000 0.00 0.00 33.44 3.42
120 121 6.029346 TCGATGCTCAATAAGATCATGCTA 57.971 37.500 0.00 0.00 33.44 3.49
121 122 4.891260 TCGATGCTCAATAAGATCATGCT 58.109 39.130 0.00 0.00 33.44 3.79
122 123 5.447413 CCATCGATGCTCAATAAGATCATGC 60.447 44.000 20.25 0.00 33.44 4.06
123 124 5.447413 GCCATCGATGCTCAATAAGATCATG 60.447 44.000 20.25 1.57 33.44 3.07
124 125 4.634883 GCCATCGATGCTCAATAAGATCAT 59.365 41.667 20.25 0.00 35.87 2.45
125 126 3.999001 GCCATCGATGCTCAATAAGATCA 59.001 43.478 20.25 0.00 0.00 2.92
126 127 3.999001 TGCCATCGATGCTCAATAAGATC 59.001 43.478 20.25 0.00 0.00 2.75
127 128 4.011966 TGCCATCGATGCTCAATAAGAT 57.988 40.909 20.25 0.00 0.00 2.40
128 129 3.473923 TGCCATCGATGCTCAATAAGA 57.526 42.857 20.25 0.00 0.00 2.10
129 130 3.562973 AGTTGCCATCGATGCTCAATAAG 59.437 43.478 24.28 10.73 0.00 1.73
130 131 3.544684 AGTTGCCATCGATGCTCAATAA 58.455 40.909 24.28 10.53 0.00 1.40
131 132 3.133691 GAGTTGCCATCGATGCTCAATA 58.866 45.455 24.28 9.25 0.00 1.90
132 133 1.945394 GAGTTGCCATCGATGCTCAAT 59.055 47.619 24.28 16.83 0.00 2.57
133 134 1.065926 AGAGTTGCCATCGATGCTCAA 60.066 47.619 23.86 22.12 0.00 3.02
134 135 0.538584 AGAGTTGCCATCGATGCTCA 59.461 50.000 23.86 18.73 0.00 4.26
135 136 2.515926 TAGAGTTGCCATCGATGCTC 57.484 50.000 20.25 18.86 0.00 4.26
136 137 2.103771 ACATAGAGTTGCCATCGATGCT 59.896 45.455 20.25 11.26 34.32 3.79
137 138 2.222678 CACATAGAGTTGCCATCGATGC 59.777 50.000 20.25 15.19 34.32 3.91
138 139 2.804527 CCACATAGAGTTGCCATCGATG 59.195 50.000 18.76 18.76 36.30 3.84
139 140 2.224378 CCCACATAGAGTTGCCATCGAT 60.224 50.000 0.00 0.00 0.00 3.59
140 141 1.138859 CCCACATAGAGTTGCCATCGA 59.861 52.381 0.00 0.00 0.00 3.59
141 142 1.134401 ACCCACATAGAGTTGCCATCG 60.134 52.381 0.00 0.00 0.00 3.84
142 143 2.092968 TCACCCACATAGAGTTGCCATC 60.093 50.000 0.00 0.00 0.00 3.51
143 144 1.915489 TCACCCACATAGAGTTGCCAT 59.085 47.619 0.00 0.00 0.00 4.40
144 145 1.278985 CTCACCCACATAGAGTTGCCA 59.721 52.381 0.00 0.00 0.00 4.92
145 146 1.407437 CCTCACCCACATAGAGTTGCC 60.407 57.143 0.00 0.00 0.00 4.52
146 147 1.407437 CCCTCACCCACATAGAGTTGC 60.407 57.143 0.00 0.00 0.00 4.17
147 148 1.909302 ACCCTCACCCACATAGAGTTG 59.091 52.381 0.00 0.00 0.00 3.16
148 149 1.909302 CACCCTCACCCACATAGAGTT 59.091 52.381 0.00 0.00 0.00 3.01
149 150 1.573108 CACCCTCACCCACATAGAGT 58.427 55.000 0.00 0.00 0.00 3.24
150 151 0.833287 CCACCCTCACCCACATAGAG 59.167 60.000 0.00 0.00 0.00 2.43
151 152 0.620410 CCCACCCTCACCCACATAGA 60.620 60.000 0.00 0.00 0.00 1.98
152 153 1.635817 CCCCACCCTCACCCACATAG 61.636 65.000 0.00 0.00 0.00 2.23
153 154 1.618143 CCCCACCCTCACCCACATA 60.618 63.158 0.00 0.00 0.00 2.29
154 155 2.941025 CCCCACCCTCACCCACAT 60.941 66.667 0.00 0.00 0.00 3.21
180 181 9.196139 ACGAATAGAAATGAATAAAAATGGGGA 57.804 29.630 0.00 0.00 0.00 4.81
181 182 9.248291 CACGAATAGAAATGAATAAAAATGGGG 57.752 33.333 0.00 0.00 0.00 4.96
182 183 9.801873 ACACGAATAGAAATGAATAAAAATGGG 57.198 29.630 0.00 0.00 0.00 4.00
191 192 9.166173 TCAAATCTCACACGAATAGAAATGAAT 57.834 29.630 0.00 0.00 0.00 2.57
192 193 8.546597 TCAAATCTCACACGAATAGAAATGAA 57.453 30.769 0.00 0.00 0.00 2.57
193 194 8.443160 GTTCAAATCTCACACGAATAGAAATGA 58.557 33.333 0.00 0.00 0.00 2.57
194 195 8.229811 TGTTCAAATCTCACACGAATAGAAATG 58.770 33.333 0.00 0.00 0.00 2.32
195 196 8.322906 TGTTCAAATCTCACACGAATAGAAAT 57.677 30.769 0.00 0.00 0.00 2.17
196 197 7.722795 TGTTCAAATCTCACACGAATAGAAA 57.277 32.000 0.00 0.00 0.00 2.52
197 198 7.722795 TTGTTCAAATCTCACACGAATAGAA 57.277 32.000 0.00 0.00 0.00 2.10
198 199 7.905604 ATTGTTCAAATCTCACACGAATAGA 57.094 32.000 0.00 0.00 0.00 1.98
199 200 8.843733 CAAATTGTTCAAATCTCACACGAATAG 58.156 33.333 0.00 0.00 0.00 1.73
200 201 8.349245 ACAAATTGTTCAAATCTCACACGAATA 58.651 29.630 0.00 0.00 0.00 1.75
201 202 7.202526 ACAAATTGTTCAAATCTCACACGAAT 58.797 30.769 0.00 0.00 0.00 3.34
202 203 6.559810 ACAAATTGTTCAAATCTCACACGAA 58.440 32.000 0.00 0.00 0.00 3.85
203 204 6.130298 ACAAATTGTTCAAATCTCACACGA 57.870 33.333 0.00 0.00 0.00 4.35
204 205 6.630015 CAACAAATTGTTCAAATCTCACACG 58.370 36.000 8.59 0.00 38.77 4.49
267 268 9.762933 AGCAATTCACAATACAACAATAGTTTT 57.237 25.926 0.00 0.00 35.28 2.43
268 269 9.762933 AAGCAATTCACAATACAACAATAGTTT 57.237 25.926 0.00 0.00 35.28 2.66
269 270 9.762933 AAAGCAATTCACAATACAACAATAGTT 57.237 25.926 0.00 0.00 38.88 2.24
270 271 9.762933 AAAAGCAATTCACAATACAACAATAGT 57.237 25.926 0.00 0.00 0.00 2.12
272 273 9.755804 TGAAAAGCAATTCACAATACAACAATA 57.244 25.926 0.53 0.00 34.50 1.90
273 274 8.659925 TGAAAAGCAATTCACAATACAACAAT 57.340 26.923 0.53 0.00 34.50 2.71
274 275 7.978414 TCTGAAAAGCAATTCACAATACAACAA 59.022 29.630 0.53 0.00 35.55 2.83
275 276 7.434897 GTCTGAAAAGCAATTCACAATACAACA 59.565 33.333 0.53 0.00 35.55 3.33
276 277 7.096065 GGTCTGAAAAGCAATTCACAATACAAC 60.096 37.037 0.53 0.00 35.55 3.32
277 278 6.922957 GGTCTGAAAAGCAATTCACAATACAA 59.077 34.615 0.53 0.00 35.55 2.41
278 279 6.040278 TGGTCTGAAAAGCAATTCACAATACA 59.960 34.615 0.53 0.00 35.55 2.29
279 280 6.446318 TGGTCTGAAAAGCAATTCACAATAC 58.554 36.000 0.53 0.00 35.55 1.89
280 281 6.647334 TGGTCTGAAAAGCAATTCACAATA 57.353 33.333 0.53 0.00 35.55 1.90
281 282 5.534207 TGGTCTGAAAAGCAATTCACAAT 57.466 34.783 0.53 0.00 35.55 2.71
282 283 4.998671 TGGTCTGAAAAGCAATTCACAA 57.001 36.364 0.53 0.00 35.55 3.33
283 284 5.068855 TGAATGGTCTGAAAAGCAATTCACA 59.931 36.000 0.53 0.00 35.55 3.58
284 285 5.531634 TGAATGGTCTGAAAAGCAATTCAC 58.468 37.500 0.53 0.00 35.55 3.18
285 286 5.787953 TGAATGGTCTGAAAAGCAATTCA 57.212 34.783 4.42 4.42 37.70 2.57
289 290 8.344831 CGAATATATGAATGGTCTGAAAAGCAA 58.655 33.333 0.00 0.00 0.00 3.91
290 291 7.498900 ACGAATATATGAATGGTCTGAAAAGCA 59.501 33.333 0.00 0.00 0.00 3.91
291 292 7.865707 ACGAATATATGAATGGTCTGAAAAGC 58.134 34.615 0.00 0.00 0.00 3.51
294 295 9.996554 ACATACGAATATATGAATGGTCTGAAA 57.003 29.630 0.00 0.00 36.27 2.69
295 296 9.996554 AACATACGAATATATGAATGGTCTGAA 57.003 29.630 0.00 0.00 36.27 3.02
296 297 9.423061 CAACATACGAATATATGAATGGTCTGA 57.577 33.333 0.00 0.00 36.27 3.27
297 298 9.423061 TCAACATACGAATATATGAATGGTCTG 57.577 33.333 0.00 0.00 36.27 3.51
298 299 9.996554 TTCAACATACGAATATATGAATGGTCT 57.003 29.630 0.00 0.00 36.27 3.85
324 325 9.884636 TGGATCGAATGGAATCGTAATATAAAT 57.115 29.630 0.00 0.00 43.19 1.40
325 326 9.884636 ATGGATCGAATGGAATCGTAATATAAA 57.115 29.630 0.00 0.00 43.19 1.40
331 332 9.884636 AATAATATGGATCGAATGGAATCGTAA 57.115 29.630 0.00 0.00 43.19 3.18
332 333 9.313118 CAATAATATGGATCGAATGGAATCGTA 57.687 33.333 0.00 0.00 43.19 3.43
333 334 8.040727 TCAATAATATGGATCGAATGGAATCGT 58.959 33.333 0.00 0.00 43.19 3.73
334 335 8.331022 GTCAATAATATGGATCGAATGGAATCG 58.669 37.037 0.00 0.00 44.04 3.34
335 336 9.166173 TGTCAATAATATGGATCGAATGGAATC 57.834 33.333 0.00 0.00 0.00 2.52
336 337 9.690913 ATGTCAATAATATGGATCGAATGGAAT 57.309 29.630 0.00 0.00 0.00 3.01
337 338 8.949177 CATGTCAATAATATGGATCGAATGGAA 58.051 33.333 0.00 0.00 0.00 3.53
338 339 8.102676 ACATGTCAATAATATGGATCGAATGGA 58.897 33.333 0.00 0.00 31.12 3.41
339 340 8.179615 CACATGTCAATAATATGGATCGAATGG 58.820 37.037 0.00 0.00 31.12 3.16
340 341 8.724229 ACACATGTCAATAATATGGATCGAATG 58.276 33.333 0.00 0.00 31.12 2.67
341 342 8.853077 ACACATGTCAATAATATGGATCGAAT 57.147 30.769 0.00 0.00 31.12 3.34
342 343 9.771534 TTACACATGTCAATAATATGGATCGAA 57.228 29.630 0.00 0.00 31.12 3.71
343 344 9.942850 ATTACACATGTCAATAATATGGATCGA 57.057 29.630 0.00 0.00 31.12 3.59
354 355 9.877137 GCATCGAATAAATTACACATGTCAATA 57.123 29.630 0.00 0.00 0.00 1.90
355 356 8.623903 AGCATCGAATAAATTACACATGTCAAT 58.376 29.630 0.00 0.00 0.00 2.57
356 357 7.984391 AGCATCGAATAAATTACACATGTCAA 58.016 30.769 0.00 0.00 0.00 3.18
357 358 7.552458 AGCATCGAATAAATTACACATGTCA 57.448 32.000 0.00 0.00 0.00 3.58
358 359 9.533983 CATAGCATCGAATAAATTACACATGTC 57.466 33.333 0.00 0.00 0.00 3.06
359 360 9.056005 ACATAGCATCGAATAAATTACACATGT 57.944 29.630 0.00 0.00 0.00 3.21
371 372 9.263538 ACCGTAAATTTTACATAGCATCGAATA 57.736 29.630 17.14 0.00 0.00 1.75
372 373 8.067784 CACCGTAAATTTTACATAGCATCGAAT 58.932 33.333 17.14 0.00 0.00 3.34
373 374 7.064847 ACACCGTAAATTTTACATAGCATCGAA 59.935 33.333 17.14 0.00 0.00 3.71
374 375 6.535865 ACACCGTAAATTTTACATAGCATCGA 59.464 34.615 17.14 0.00 0.00 3.59
375 376 6.711579 ACACCGTAAATTTTACATAGCATCG 58.288 36.000 17.14 3.22 0.00 3.84
376 377 6.844279 CGACACCGTAAATTTTACATAGCATC 59.156 38.462 17.14 7.34 0.00 3.91
377 378 6.711579 CGACACCGTAAATTTTACATAGCAT 58.288 36.000 17.14 0.40 0.00 3.79
378 379 6.097156 CGACACCGTAAATTTTACATAGCA 57.903 37.500 17.14 0.00 0.00 3.49
394 395 2.879462 GGAGCGCTTACGACACCG 60.879 66.667 13.26 0.00 43.93 4.94
395 396 1.805945 CAGGAGCGCTTACGACACC 60.806 63.158 13.26 6.08 43.93 4.16
396 397 2.445438 GCAGGAGCGCTTACGACAC 61.445 63.158 13.26 0.00 43.93 3.67
397 398 2.126071 GCAGGAGCGCTTACGACA 60.126 61.111 13.26 0.00 43.93 4.35
411 412 0.526524 GGACGAGATCTGTTCCGCAG 60.527 60.000 0.00 0.00 46.34 5.18
412 413 1.511305 GGACGAGATCTGTTCCGCA 59.489 57.895 0.00 0.00 0.00 5.69
413 414 1.227002 GGGACGAGATCTGTTCCGC 60.227 63.158 0.00 0.00 0.00 5.54
414 415 0.747255 ATGGGACGAGATCTGTTCCG 59.253 55.000 0.00 0.00 37.86 4.30
415 416 3.385111 ACTTATGGGACGAGATCTGTTCC 59.615 47.826 0.00 7.80 35.38 3.62
416 417 4.657436 ACTTATGGGACGAGATCTGTTC 57.343 45.455 0.00 0.00 0.00 3.18
417 418 5.178797 CAAACTTATGGGACGAGATCTGTT 58.821 41.667 0.00 0.00 0.00 3.16
418 419 4.223032 ACAAACTTATGGGACGAGATCTGT 59.777 41.667 0.00 0.00 0.00 3.41
419 420 4.568359 CACAAACTTATGGGACGAGATCTG 59.432 45.833 0.00 0.00 0.00 2.90
420 421 4.383118 CCACAAACTTATGGGACGAGATCT 60.383 45.833 0.00 0.00 31.83 2.75
421 422 3.871594 CCACAAACTTATGGGACGAGATC 59.128 47.826 0.00 0.00 31.83 2.75
422 423 3.873910 CCACAAACTTATGGGACGAGAT 58.126 45.455 0.00 0.00 31.83 2.75
423 424 3.328382 CCACAAACTTATGGGACGAGA 57.672 47.619 0.00 0.00 31.83 4.04
430 431 5.467035 AAACACATCCCACAAACTTATGG 57.533 39.130 0.00 0.00 35.59 2.74
431 432 6.083630 CGTAAACACATCCCACAAACTTATG 58.916 40.000 0.00 0.00 0.00 1.90
432 433 5.766174 ACGTAAACACATCCCACAAACTTAT 59.234 36.000 0.00 0.00 0.00 1.73
433 434 5.007823 CACGTAAACACATCCCACAAACTTA 59.992 40.000 0.00 0.00 0.00 2.24
434 435 3.949113 ACGTAAACACATCCCACAAACTT 59.051 39.130 0.00 0.00 0.00 2.66
435 436 3.314080 CACGTAAACACATCCCACAAACT 59.686 43.478 0.00 0.00 0.00 2.66
436 437 3.312973 TCACGTAAACACATCCCACAAAC 59.687 43.478 0.00 0.00 0.00 2.93
437 438 3.542648 TCACGTAAACACATCCCACAAA 58.457 40.909 0.00 0.00 0.00 2.83
438 439 3.195471 TCACGTAAACACATCCCACAA 57.805 42.857 0.00 0.00 0.00 3.33
439 440 2.912690 TCACGTAAACACATCCCACA 57.087 45.000 0.00 0.00 0.00 4.17
440 441 3.370978 CAGATCACGTAAACACATCCCAC 59.629 47.826 0.00 0.00 0.00 4.61
441 442 3.007506 ACAGATCACGTAAACACATCCCA 59.992 43.478 0.00 0.00 0.00 4.37
442 443 3.596214 ACAGATCACGTAAACACATCCC 58.404 45.455 0.00 0.00 0.00 3.85
443 444 4.092968 GGAACAGATCACGTAAACACATCC 59.907 45.833 0.00 0.00 0.00 3.51
444 445 4.688879 TGGAACAGATCACGTAAACACATC 59.311 41.667 0.00 0.00 0.00 3.06
445 446 4.451096 GTGGAACAGATCACGTAAACACAT 59.549 41.667 0.00 0.00 41.80 3.21
446 447 3.805422 GTGGAACAGATCACGTAAACACA 59.195 43.478 0.00 0.00 41.80 3.72
447 448 3.185797 GGTGGAACAGATCACGTAAACAC 59.814 47.826 0.00 2.62 41.80 3.32
448 449 3.395639 GGTGGAACAGATCACGTAAACA 58.604 45.455 0.00 0.00 41.80 2.83
449 450 2.410730 CGGTGGAACAGATCACGTAAAC 59.589 50.000 0.00 0.00 41.80 2.01
450 451 2.610976 CCGGTGGAACAGATCACGTAAA 60.611 50.000 0.00 0.00 41.80 2.01
451 452 1.067425 CCGGTGGAACAGATCACGTAA 60.067 52.381 0.00 0.00 41.80 3.18
452 453 0.528924 CCGGTGGAACAGATCACGTA 59.471 55.000 0.00 0.00 41.80 3.57
453 454 1.183030 TCCGGTGGAACAGATCACGT 61.183 55.000 0.00 0.00 41.80 4.49
454 455 0.458543 CTCCGGTGGAACAGATCACG 60.459 60.000 0.00 0.00 41.80 4.35
455 456 0.741221 GCTCCGGTGGAACAGATCAC 60.741 60.000 0.00 0.00 41.80 3.06
456 457 1.596934 GCTCCGGTGGAACAGATCA 59.403 57.895 0.00 0.00 41.80 2.92
457 458 1.519455 CGCTCCGGTGGAACAGATC 60.519 63.158 0.00 0.00 41.80 2.75
458 459 2.579201 CGCTCCGGTGGAACAGAT 59.421 61.111 0.00 0.00 41.80 2.90
459 460 4.373116 GCGCTCCGGTGGAACAGA 62.373 66.667 0.00 0.00 41.80 3.41
470 471 2.446753 TTTTAAACGGTGCGCGCTCC 62.447 55.000 35.77 35.77 0.00 4.70
471 472 0.657951 TTTTTAAACGGTGCGCGCTC 60.658 50.000 33.29 28.51 0.00 5.03
472 473 0.659123 CTTTTTAAACGGTGCGCGCT 60.659 50.000 33.29 13.56 0.00 5.92
473 474 0.931202 ACTTTTTAAACGGTGCGCGC 60.931 50.000 27.26 27.26 0.00 6.86
474 475 1.468895 AACTTTTTAAACGGTGCGCG 58.531 45.000 0.00 0.00 0.00 6.86
475 476 3.589314 CAAAACTTTTTAAACGGTGCGC 58.411 40.909 0.00 0.00 0.00 6.09
476 477 3.542485 GGCAAAACTTTTTAAACGGTGCG 60.542 43.478 0.00 0.00 0.00 5.34
477 478 3.371285 TGGCAAAACTTTTTAAACGGTGC 59.629 39.130 0.00 0.00 0.00 5.01
478 479 4.493382 GCTGGCAAAACTTTTTAAACGGTG 60.493 41.667 0.00 0.00 0.00 4.94
479 480 3.619483 GCTGGCAAAACTTTTTAAACGGT 59.381 39.130 0.00 0.00 0.00 4.83
480 481 3.001838 GGCTGGCAAAACTTTTTAAACGG 59.998 43.478 0.00 0.00 0.00 4.44
481 482 3.001838 GGGCTGGCAAAACTTTTTAAACG 59.998 43.478 2.88 0.00 0.00 3.60
482 483 3.314080 GGGGCTGGCAAAACTTTTTAAAC 59.686 43.478 2.88 0.00 0.00 2.01
483 484 3.201045 AGGGGCTGGCAAAACTTTTTAAA 59.799 39.130 2.88 0.00 0.00 1.52
484 485 2.774809 AGGGGCTGGCAAAACTTTTTAA 59.225 40.909 2.88 0.00 0.00 1.52
485 486 2.403561 AGGGGCTGGCAAAACTTTTTA 58.596 42.857 2.88 0.00 0.00 1.52
486 487 1.212375 AGGGGCTGGCAAAACTTTTT 58.788 45.000 2.88 0.00 0.00 1.94
487 488 1.134128 CAAGGGGCTGGCAAAACTTTT 60.134 47.619 2.88 0.00 0.00 2.27
488 489 0.469494 CAAGGGGCTGGCAAAACTTT 59.531 50.000 2.88 0.00 0.00 2.66
489 490 0.398381 TCAAGGGGCTGGCAAAACTT 60.398 50.000 2.88 0.00 0.00 2.66
490 491 0.398381 TTCAAGGGGCTGGCAAAACT 60.398 50.000 2.88 0.00 0.00 2.66
491 492 0.249868 GTTCAAGGGGCTGGCAAAAC 60.250 55.000 2.88 0.00 0.00 2.43
492 493 1.743321 CGTTCAAGGGGCTGGCAAAA 61.743 55.000 2.88 0.00 0.00 2.44
493 494 2.199652 CGTTCAAGGGGCTGGCAAA 61.200 57.895 2.88 0.00 0.00 3.68
494 495 2.597217 CGTTCAAGGGGCTGGCAA 60.597 61.111 2.88 0.00 0.00 4.52
498 499 2.070654 AAAACGCGTTCAAGGGGCTG 62.071 55.000 26.77 0.00 0.00 4.85
499 500 1.826487 AAAACGCGTTCAAGGGGCT 60.826 52.632 26.77 3.45 0.00 5.19
500 501 1.660264 CAAAACGCGTTCAAGGGGC 60.660 57.895 26.77 0.00 0.00 5.80
501 502 1.660264 GCAAAACGCGTTCAAGGGG 60.660 57.895 26.77 11.89 0.00 4.79
502 503 3.916439 GCAAAACGCGTTCAAGGG 58.084 55.556 26.77 13.63 0.00 3.95
511 512 4.379143 GGACGTCCCGCAAAACGC 62.379 66.667 24.75 0.00 42.47 4.84
522 523 4.955774 ACCACGCAACCGGACGTC 62.956 66.667 9.46 7.13 41.32 4.34
523 524 4.955774 GACCACGCAACCGGACGT 62.956 66.667 9.46 12.71 44.75 4.34
524 525 4.657824 AGACCACGCAACCGGACG 62.658 66.667 9.46 11.95 39.22 4.79
525 526 3.041940 CAGACCACGCAACCGGAC 61.042 66.667 9.46 0.00 39.22 4.79
526 527 4.980805 GCAGACCACGCAACCGGA 62.981 66.667 9.46 0.00 39.22 5.14
527 528 3.583276 TAGCAGACCACGCAACCGG 62.583 63.158 0.00 0.00 39.22 5.28
528 529 2.048597 TAGCAGACCACGCAACCG 60.049 61.111 0.00 0.00 41.14 4.44
529 530 0.737715 CTCTAGCAGACCACGCAACC 60.738 60.000 0.00 0.00 0.00 3.77
530 531 0.243907 TCTCTAGCAGACCACGCAAC 59.756 55.000 0.00 0.00 0.00 4.17
531 532 1.134995 CATCTCTAGCAGACCACGCAA 60.135 52.381 0.00 0.00 32.26 4.85
532 533 0.457443 CATCTCTAGCAGACCACGCA 59.543 55.000 0.00 0.00 32.26 5.24
533 534 0.873743 GCATCTCTAGCAGACCACGC 60.874 60.000 0.00 0.00 32.26 5.34
534 535 0.743688 AGCATCTCTAGCAGACCACG 59.256 55.000 0.00 0.00 32.26 4.94
535 536 2.507339 GAGCATCTCTAGCAGACCAC 57.493 55.000 0.00 0.00 32.26 4.16
552 553 1.999735 TCAAAACCGCTCGCATTAGAG 59.000 47.619 0.00 0.00 41.03 2.43
553 554 2.087501 TCAAAACCGCTCGCATTAGA 57.912 45.000 0.00 0.00 0.00 2.10
554 555 2.415168 TCTTCAAAACCGCTCGCATTAG 59.585 45.455 0.00 0.00 0.00 1.73
555 556 2.418692 TCTTCAAAACCGCTCGCATTA 58.581 42.857 0.00 0.00 0.00 1.90
556 557 1.234821 TCTTCAAAACCGCTCGCATT 58.765 45.000 0.00 0.00 0.00 3.56
557 558 1.131126 CATCTTCAAAACCGCTCGCAT 59.869 47.619 0.00 0.00 0.00 4.73
558 559 0.516877 CATCTTCAAAACCGCTCGCA 59.483 50.000 0.00 0.00 0.00 5.10
559 560 0.796312 TCATCTTCAAAACCGCTCGC 59.204 50.000 0.00 0.00 0.00 5.03
560 561 2.223112 CCATCATCTTCAAAACCGCTCG 60.223 50.000 0.00 0.00 0.00 5.03
561 562 2.749621 ACCATCATCTTCAAAACCGCTC 59.250 45.455 0.00 0.00 0.00 5.03
562 563 2.795329 ACCATCATCTTCAAAACCGCT 58.205 42.857 0.00 0.00 0.00 5.52
563 564 3.575965 AACCATCATCTTCAAAACCGC 57.424 42.857 0.00 0.00 0.00 5.68
564 565 5.621197 TGTAACCATCATCTTCAAAACCG 57.379 39.130 0.00 0.00 0.00 4.44
565 566 8.087750 TGATTTGTAACCATCATCTTCAAAACC 58.912 33.333 0.00 0.00 0.00 3.27
566 567 9.474920 TTGATTTGTAACCATCATCTTCAAAAC 57.525 29.630 0.00 0.00 29.45 2.43
568 569 9.474920 GTTTGATTTGTAACCATCATCTTCAAA 57.525 29.630 0.00 0.00 29.45 2.69
569 570 8.637099 TGTTTGATTTGTAACCATCATCTTCAA 58.363 29.630 0.00 0.00 29.45 2.69
570 571 8.175925 TGTTTGATTTGTAACCATCATCTTCA 57.824 30.769 0.00 0.00 29.45 3.02
571 572 9.474920 TTTGTTTGATTTGTAACCATCATCTTC 57.525 29.630 0.00 0.00 29.45 2.87
573 574 9.643693 GATTTGTTTGATTTGTAACCATCATCT 57.356 29.630 0.00 0.00 29.45 2.90
574 575 9.421806 TGATTTGTTTGATTTGTAACCATCATC 57.578 29.630 0.00 0.00 29.45 2.92
575 576 9.775854 TTGATTTGTTTGATTTGTAACCATCAT 57.224 25.926 0.00 0.00 29.45 2.45
576 577 9.605275 TTTGATTTGTTTGATTTGTAACCATCA 57.395 25.926 0.00 0.00 0.00 3.07
577 578 9.862585 GTTTGATTTGTTTGATTTGTAACCATC 57.137 29.630 0.00 0.00 0.00 3.51
578 579 8.835439 GGTTTGATTTGTTTGATTTGTAACCAT 58.165 29.630 0.00 0.00 32.50 3.55
579 580 7.010552 CGGTTTGATTTGTTTGATTTGTAACCA 59.989 33.333 0.00 0.00 31.89 3.67
580 581 7.222999 TCGGTTTGATTTGTTTGATTTGTAACC 59.777 33.333 0.00 0.00 0.00 2.85
581 582 8.053653 GTCGGTTTGATTTGTTTGATTTGTAAC 58.946 33.333 0.00 0.00 0.00 2.50
582 583 7.976734 AGTCGGTTTGATTTGTTTGATTTGTAA 59.023 29.630 0.00 0.00 0.00 2.41
583 584 7.433719 CAGTCGGTTTGATTTGTTTGATTTGTA 59.566 33.333 0.00 0.00 0.00 2.41
584 585 6.255453 CAGTCGGTTTGATTTGTTTGATTTGT 59.745 34.615 0.00 0.00 0.00 2.83
585 586 6.292274 CCAGTCGGTTTGATTTGTTTGATTTG 60.292 38.462 0.00 0.00 0.00 2.32
586 587 5.752955 CCAGTCGGTTTGATTTGTTTGATTT 59.247 36.000 0.00 0.00 0.00 2.17
587 588 5.163457 ACCAGTCGGTTTGATTTGTTTGATT 60.163 36.000 0.00 0.00 46.31 2.57
588 589 4.340950 ACCAGTCGGTTTGATTTGTTTGAT 59.659 37.500 0.00 0.00 46.31 2.57
589 590 3.697045 ACCAGTCGGTTTGATTTGTTTGA 59.303 39.130 0.00 0.00 46.31 2.69
590 591 4.040445 ACCAGTCGGTTTGATTTGTTTG 57.960 40.909 0.00 0.00 46.31 2.93
599 600 9.271100 TCAACATTGAACTAACCAGTCGGTTTG 62.271 40.741 1.60 3.29 42.91 2.93
600 601 7.354125 TCAACATTGAACTAACCAGTCGGTTT 61.354 38.462 1.60 0.00 42.91 3.27
601 602 5.917032 TCAACATTGAACTAACCAGTCGGTT 60.917 40.000 1.97 1.97 45.39 4.44
602 603 4.443739 TCAACATTGAACTAACCAGTCGGT 60.444 41.667 0.00 0.00 40.15 4.69
603 604 4.062293 TCAACATTGAACTAACCAGTCGG 58.938 43.478 0.00 0.00 32.29 4.79
604 605 5.666969 TTCAACATTGAACTAACCAGTCG 57.333 39.130 2.89 0.00 41.88 4.18
605 606 7.379529 CACATTTCAACATTGAACTAACCAGTC 59.620 37.037 6.55 0.00 45.99 3.51
606 607 7.202526 CACATTTCAACATTGAACTAACCAGT 58.797 34.615 6.55 0.00 45.99 4.00
607 608 6.642131 CCACATTTCAACATTGAACTAACCAG 59.358 38.462 6.55 0.00 45.99 4.00
608 609 6.322456 TCCACATTTCAACATTGAACTAACCA 59.678 34.615 6.55 0.00 45.99 3.67
609 610 6.640907 GTCCACATTTCAACATTGAACTAACC 59.359 38.462 6.55 0.00 45.99 2.85
610 611 7.199766 TGTCCACATTTCAACATTGAACTAAC 58.800 34.615 6.55 1.92 45.99 2.34
611 612 7.340122 TGTCCACATTTCAACATTGAACTAA 57.660 32.000 6.55 0.00 45.99 2.24
612 613 6.951062 TGTCCACATTTCAACATTGAACTA 57.049 33.333 6.55 0.00 45.99 2.24
613 614 5.850557 TGTCCACATTTCAACATTGAACT 57.149 34.783 6.55 0.00 45.99 3.01
614 615 6.900568 TTTGTCCACATTTCAACATTGAAC 57.099 33.333 6.55 0.00 45.99 3.18
615 616 7.270779 TGATTTGTCCACATTTCAACATTGAA 58.729 30.769 2.89 2.89 44.78 2.69
616 617 6.814043 TGATTTGTCCACATTTCAACATTGA 58.186 32.000 0.00 0.00 34.92 2.57
617 618 7.479897 TTGATTTGTCCACATTTCAACATTG 57.520 32.000 2.34 0.00 0.00 2.82
618 619 7.012232 GGTTTGATTTGTCCACATTTCAACATT 59.988 33.333 4.97 0.00 31.34 2.71
619 620 6.482973 GGTTTGATTTGTCCACATTTCAACAT 59.517 34.615 4.97 0.00 31.34 2.71
620 621 5.814705 GGTTTGATTTGTCCACATTTCAACA 59.185 36.000 4.97 0.00 31.34 3.33
621 622 5.051106 CGGTTTGATTTGTCCACATTTCAAC 60.051 40.000 4.97 0.00 31.34 3.18
622 623 5.046529 CGGTTTGATTTGTCCACATTTCAA 58.953 37.500 2.34 2.34 0.00 2.69
623 624 4.339530 TCGGTTTGATTTGTCCACATTTCA 59.660 37.500 0.00 0.00 0.00 2.69
624 625 4.865776 TCGGTTTGATTTGTCCACATTTC 58.134 39.130 0.00 0.00 0.00 2.17
625 626 4.795962 GCTCGGTTTGATTTGTCCACATTT 60.796 41.667 0.00 0.00 0.00 2.32
626 627 3.305335 GCTCGGTTTGATTTGTCCACATT 60.305 43.478 0.00 0.00 0.00 2.71
627 628 2.228822 GCTCGGTTTGATTTGTCCACAT 59.771 45.455 0.00 0.00 0.00 3.21
628 629 1.606668 GCTCGGTTTGATTTGTCCACA 59.393 47.619 0.00 0.00 0.00 4.17
629 630 1.399727 CGCTCGGTTTGATTTGTCCAC 60.400 52.381 0.00 0.00 0.00 4.02
630 631 0.871722 CGCTCGGTTTGATTTGTCCA 59.128 50.000 0.00 0.00 0.00 4.02
631 632 0.168128 CCGCTCGGTTTGATTTGTCC 59.832 55.000 0.00 0.00 0.00 4.02
632 633 3.676091 CCGCTCGGTTTGATTTGTC 57.324 52.632 0.00 0.00 0.00 3.18
643 644 0.040425 CAAACCTCAAAACCGCTCGG 60.040 55.000 6.79 6.79 42.03 4.63
644 645 0.660300 GCAAACCTCAAAACCGCTCG 60.660 55.000 0.00 0.00 0.00 5.03
645 646 0.668535 AGCAAACCTCAAAACCGCTC 59.331 50.000 0.00 0.00 0.00 5.03
646 647 0.385390 CAGCAAACCTCAAAACCGCT 59.615 50.000 0.00 0.00 0.00 5.52
647 648 0.102300 ACAGCAAACCTCAAAACCGC 59.898 50.000 0.00 0.00 0.00 5.68
648 649 2.192624 CAACAGCAAACCTCAAAACCG 58.807 47.619 0.00 0.00 0.00 4.44
649 650 1.933181 GCAACAGCAAACCTCAAAACC 59.067 47.619 0.00 0.00 0.00 3.27
650 651 1.933181 GGCAACAGCAAACCTCAAAAC 59.067 47.619 0.00 0.00 0.00 2.43
651 652 1.552337 TGGCAACAGCAAACCTCAAAA 59.448 42.857 0.00 0.00 46.17 2.44
652 653 1.189752 TGGCAACAGCAAACCTCAAA 58.810 45.000 0.00 0.00 46.17 2.69
653 654 2.893441 TGGCAACAGCAAACCTCAA 58.107 47.368 0.00 0.00 46.17 3.02
654 655 4.674306 TGGCAACAGCAAACCTCA 57.326 50.000 0.00 0.00 46.17 3.86
675 676 6.605594 TCCATGGACTTTTGTGTACTCTTTTT 59.394 34.615 11.44 0.00 0.00 1.94
676 677 6.126409 TCCATGGACTTTTGTGTACTCTTTT 58.874 36.000 11.44 0.00 0.00 2.27
677 678 5.690865 TCCATGGACTTTTGTGTACTCTTT 58.309 37.500 11.44 0.00 0.00 2.52
678 679 5.304686 TCCATGGACTTTTGTGTACTCTT 57.695 39.130 11.44 0.00 0.00 2.85
679 680 4.974645 TCCATGGACTTTTGTGTACTCT 57.025 40.909 11.44 0.00 0.00 3.24
680 681 4.455877 CCTTCCATGGACTTTTGTGTACTC 59.544 45.833 15.91 0.00 0.00 2.59
681 682 4.398319 CCTTCCATGGACTTTTGTGTACT 58.602 43.478 15.91 0.00 0.00 2.73
682 683 3.057526 GCCTTCCATGGACTTTTGTGTAC 60.058 47.826 15.91 0.00 0.00 2.90
683 684 3.153919 GCCTTCCATGGACTTTTGTGTA 58.846 45.455 15.91 0.00 0.00 2.90
684 685 1.963515 GCCTTCCATGGACTTTTGTGT 59.036 47.619 15.91 0.00 0.00 3.72
685 686 1.962807 TGCCTTCCATGGACTTTTGTG 59.037 47.619 15.91 0.00 0.00 3.33
686 687 1.963515 GTGCCTTCCATGGACTTTTGT 59.036 47.619 15.91 0.00 0.00 2.83
687 688 1.068333 CGTGCCTTCCATGGACTTTTG 60.068 52.381 15.91 2.32 0.00 2.44
688 689 1.247567 CGTGCCTTCCATGGACTTTT 58.752 50.000 15.91 0.00 0.00 2.27
689 690 0.110486 ACGTGCCTTCCATGGACTTT 59.890 50.000 15.91 0.00 34.66 2.66
690 691 0.321653 GACGTGCCTTCCATGGACTT 60.322 55.000 15.91 0.00 34.66 3.01
691 692 1.296715 GACGTGCCTTCCATGGACT 59.703 57.895 15.91 0.00 34.66 3.85
692 693 2.100631 CGACGTGCCTTCCATGGAC 61.101 63.158 15.91 3.57 34.66 4.02
693 694 2.264480 CGACGTGCCTTCCATGGA 59.736 61.111 11.44 11.44 34.66 3.41
702 703 1.442017 GACCAATTTGCGACGTGCC 60.442 57.895 0.00 0.00 45.60 5.01
720 721 0.469917 ATGGGTAGATGGGCTGAACG 59.530 55.000 0.00 0.00 0.00 3.95
784 785 2.741211 GAACGTCGGACTTGGGCC 60.741 66.667 6.57 0.00 0.00 5.80
798 799 2.167487 AGAATTCTGGAGAGCTCGGAAC 59.833 50.000 7.30 0.51 0.00 3.62
907 1288 4.271816 CCGGTCGATCTGGCTCGG 62.272 72.222 0.00 0.00 39.13 4.63
908 1289 3.187699 CTCCGGTCGATCTGGCTCG 62.188 68.421 0.00 0.00 42.13 5.03
909 1290 2.725008 CTCCGGTCGATCTGGCTC 59.275 66.667 0.00 0.00 42.13 4.70
910 1291 3.532155 GCTCCGGTCGATCTGGCT 61.532 66.667 0.00 0.00 42.13 4.75
911 1292 4.593864 GGCTCCGGTCGATCTGGC 62.594 72.222 0.00 2.71 42.13 4.85
912 1293 4.271816 CGGCTCCGGTCGATCTGG 62.272 72.222 0.00 0.12 44.06 3.86
913 1294 3.209812 TCGGCTCCGGTCGATCTG 61.210 66.667 8.59 0.00 45.01 2.90
918 1299 4.493747 GGTTCTCGGCTCCGGTCG 62.494 72.222 8.59 4.72 42.51 4.79
919 1300 4.493747 CGGTTCTCGGCTCCGGTC 62.494 72.222 8.59 0.00 40.49 4.79
921 1302 4.194720 CTCGGTTCTCGGCTCCGG 62.195 72.222 8.59 0.00 43.75 5.14
1387 1795 5.089970 TGAGAGTTCAGAGAGAGAGAGAG 57.910 47.826 0.00 0.00 0.00 3.20
1388 1796 5.248248 TCTTGAGAGTTCAGAGAGAGAGAGA 59.752 44.000 0.00 0.00 34.15 3.10
1429 1838 1.003116 CTGACAACTCTGCTGCACAAC 60.003 52.381 0.00 0.00 0.00 3.32
1445 1854 2.739379 GCAGAACCAGAAGCTAACTGAC 59.261 50.000 18.46 11.12 37.54 3.51
1457 1866 0.588252 CACAACTTCCGCAGAACCAG 59.412 55.000 0.00 0.00 0.00 4.00
1468 1880 2.290641 CCACACAGGTTAGCACAACTTC 59.709 50.000 1.81 0.00 0.00 3.01
1479 1891 4.898861 ACCAAATTTACATCCACACAGGTT 59.101 37.500 0.00 0.00 39.02 3.50
1480 1892 4.280677 CACCAAATTTACATCCACACAGGT 59.719 41.667 0.00 0.00 39.02 4.00
1482 1894 5.703978 TCACCAAATTTACATCCACACAG 57.296 39.130 0.00 0.00 0.00 3.66
1485 1897 7.060383 ACATTTCACCAAATTTACATCCACA 57.940 32.000 0.00 0.00 28.97 4.17
1498 1910 8.622157 TCTCGTTTATTACAAACATTTCACCAA 58.378 29.630 1.32 0.00 0.00 3.67
1523 1935 3.244345 TGATGCGACGAATTTTATCGGTC 59.756 43.478 0.00 0.00 46.82 4.79
1525 1937 3.852471 TGATGCGACGAATTTTATCGG 57.148 42.857 0.00 0.00 46.82 4.18
1576 1988 2.754552 TGCTTGAAAGTGCAAACTGAGT 59.245 40.909 0.00 0.00 36.15 3.41
1666 2079 5.800296 TGTTCTTCCGTCTTCCATAATTCA 58.200 37.500 0.00 0.00 0.00 2.57
1672 2085 2.941415 GCCATGTTCTTCCGTCTTCCAT 60.941 50.000 0.00 0.00 0.00 3.41
1674 2087 1.087501 GCCATGTTCTTCCGTCTTCC 58.912 55.000 0.00 0.00 0.00 3.46
1675 2088 1.808411 TGCCATGTTCTTCCGTCTTC 58.192 50.000 0.00 0.00 0.00 2.87
1676 2089 2.496899 ATGCCATGTTCTTCCGTCTT 57.503 45.000 0.00 0.00 0.00 3.01
1681 2096 5.371526 TCTTCATCTATGCCATGTTCTTCC 58.628 41.667 0.00 0.00 0.00 3.46
1691 2106 4.517285 TGTCTTGGTTCTTCATCTATGCC 58.483 43.478 0.00 0.00 0.00 4.40
1695 2110 5.426689 AGCATGTCTTGGTTCTTCATCTA 57.573 39.130 0.00 0.00 29.87 1.98
1696 2111 4.298103 AGCATGTCTTGGTTCTTCATCT 57.702 40.909 0.00 0.00 29.87 2.90
1697 2112 4.730657 CAAGCATGTCTTGGTTCTTCATC 58.269 43.478 17.17 0.00 46.50 2.92
1698 2113 4.778534 CAAGCATGTCTTGGTTCTTCAT 57.221 40.909 17.17 0.00 46.50 2.57
1708 2123 5.003160 TGTAGTTATGTGCAAGCATGTCTT 58.997 37.500 0.00 0.00 34.78 3.01
1709 2124 4.578871 TGTAGTTATGTGCAAGCATGTCT 58.421 39.130 0.00 2.01 0.00 3.41
1710 2125 4.944962 TGTAGTTATGTGCAAGCATGTC 57.055 40.909 0.00 0.00 0.00 3.06
1711 2126 6.458751 GCTTATGTAGTTATGTGCAAGCATGT 60.459 38.462 0.00 0.00 37.63 3.21
1712 2127 5.911280 GCTTATGTAGTTATGTGCAAGCATG 59.089 40.000 0.00 0.00 37.63 4.06
1713 2128 5.009010 GGCTTATGTAGTTATGTGCAAGCAT 59.991 40.000 0.00 0.00 39.05 3.79
1714 2129 4.335315 GGCTTATGTAGTTATGTGCAAGCA 59.665 41.667 0.00 0.00 39.05 3.91
1715 2130 4.335315 TGGCTTATGTAGTTATGTGCAAGC 59.665 41.667 0.00 0.00 37.11 4.01
1716 2131 5.586243 ACTGGCTTATGTAGTTATGTGCAAG 59.414 40.000 0.00 0.00 0.00 4.01
1717 2132 5.353956 CACTGGCTTATGTAGTTATGTGCAA 59.646 40.000 0.00 0.00 0.00 4.08
1718 2133 4.875536 CACTGGCTTATGTAGTTATGTGCA 59.124 41.667 0.00 0.00 0.00 4.57
1719 2134 5.116180 TCACTGGCTTATGTAGTTATGTGC 58.884 41.667 0.00 0.00 0.00 4.57
1720 2135 6.986231 TGATCACTGGCTTATGTAGTTATGTG 59.014 38.462 0.00 0.00 0.00 3.21
1721 2136 7.124573 TGATCACTGGCTTATGTAGTTATGT 57.875 36.000 0.00 0.00 0.00 2.29
1722 2137 8.613060 ATTGATCACTGGCTTATGTAGTTATG 57.387 34.615 0.00 0.00 0.00 1.90
1723 2138 8.654997 AGATTGATCACTGGCTTATGTAGTTAT 58.345 33.333 0.00 0.00 0.00 1.89
1724 2139 8.023021 AGATTGATCACTGGCTTATGTAGTTA 57.977 34.615 0.00 0.00 0.00 2.24
1725 2140 6.893583 AGATTGATCACTGGCTTATGTAGTT 58.106 36.000 0.00 0.00 0.00 2.24
1726 2141 6.491714 AGATTGATCACTGGCTTATGTAGT 57.508 37.500 0.00 0.00 0.00 2.73
1727 2142 7.383572 GTGTAGATTGATCACTGGCTTATGTAG 59.616 40.741 0.00 0.00 0.00 2.74
1728 2143 7.210174 GTGTAGATTGATCACTGGCTTATGTA 58.790 38.462 0.00 0.00 0.00 2.29
1734 2149 2.159043 CCGTGTAGATTGATCACTGGCT 60.159 50.000 0.00 0.00 0.00 4.75
1788 2203 2.711883 TACGGACAGTTCCACCCCGA 62.712 60.000 0.00 0.00 43.00 5.14
1799 2223 1.949847 CTGCTCAGGGGTACGGACAG 61.950 65.000 0.00 0.00 0.00 3.51
1802 2226 2.363795 CCTGCTCAGGGGTACGGA 60.364 66.667 8.03 0.00 44.87 4.69
1833 2257 4.609018 CGCGCAGGGGTATGGAGG 62.609 72.222 8.75 0.00 36.55 4.30
1834 2258 2.869503 AAACGCGCAGGGGTATGGAG 62.870 60.000 5.73 0.00 42.22 3.86
1835 2259 2.961893 AAACGCGCAGGGGTATGGA 61.962 57.895 5.73 0.00 42.22 3.41
2243 2676 2.334977 ACGGGGGATGAATATGCTGTA 58.665 47.619 0.00 0.00 0.00 2.74
2271 2704 0.248907 GATTCGATCCAGGCGACGAA 60.249 55.000 14.24 14.24 45.88 3.85
2302 2744 0.179936 CTCATGGTGAGCCTCCTTCC 59.820 60.000 0.00 0.00 37.72 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.