AutoCloner

Multiple sequence alignment - TraesCS1A01G271600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G271600	chr1A	100.000	3475	0	0	1	3475	465250425	465253899	0.000000e+00	6418.0
1	TraesCS1A01G271600	chr1A	82.018	545	69	18	217	750	592813659	592813133	1.480000e-118	436.0
2	TraesCS1A01G271600	chr6A	97.109	2110	56	5	1371	3475	204306532	204304423	0.000000e+00	3554.0
3	TraesCS1A01G271600	chr6A	96.490	2108	68	6	1371	3475	473515538	473517642	0.000000e+00	3478.0
4	TraesCS1A01G271600	chr6A	96.349	2109	71	5	1371	3474	136163920	136161813	0.000000e+00	3463.0
5	TraesCS1A01G271600	chr6A	96.254	2109	74	4	1371	3475	518075238	518073131	0.000000e+00	3452.0
6	TraesCS1A01G271600	chr6A	96.023	2112	76	4	1371	3475	328876328	328878438	0.000000e+00	3428.0
7	TraesCS1A01G271600	chr6A	95.968	2108	74	6	1371	3475	213993826	213991727	0.000000e+00	3411.0
8	TraesCS1A01G271600	chr6A	96.000	475	18	1	906	1380	213994230	213993757	0.000000e+00	771.0
9	TraesCS1A01G271600	chr6A	93.131	495	33	1	906	1399	136164325	136163831	0.000000e+00	725.0
10	TraesCS1A01G271600	chr6A	94.456	469	25	1	906	1373	328875923	328876391	0.000000e+00	721.0
11	TraesCS1A01G271600	chr6A	92.742	496	32	3	906	1399	518075642	518075149	0.000000e+00	713.0
12	TraesCS1A01G271600	chr5A	97.106	2108	51	8	1371	3475	109668010	109670110	0.000000e+00	3546.0
13	TraesCS1A01G271600	chr5A	94.297	491	24	3	908	1396	109667608	109668096	0.000000e+00	749.0
14	TraesCS1A01G271600	chr5A	94.583	480	25	1	899	1377	268344295	268344774	0.000000e+00	741.0
15	TraesCS1A01G271600	chr2A	96.066	2110	77	5	1371	3475	616455950	616453842	0.000000e+00	3432.0
16	TraesCS1A01G271600	chr2A	87.796	803	74	17	117	909	427515299	427514511	0.000000e+00	918.0
17	TraesCS1A01G271600	chr2A	93.638	503	27	4	906	1405	616456355	616455855	0.000000e+00	747.0
18	TraesCS1A01G271600	chr2A	94.106	492	26	3	909	1399	154894739	154894250	0.000000e+00	745.0
19	TraesCS1A01G271600	chr2A	81.749	789	79	31	1	750	44034176	44034938	1.780000e-167	599.0
20	TraesCS1A01G271600	chr2A	81.651	545	69	17	217	750	777400157	777399633	1.150000e-114	424.0
21	TraesCS1A01G271600	chr2A	94.545	110	6	0	10	119	427515449	427515340	1.660000e-38	171.0
22	TraesCS1A01G271600	chr3A	94.707	2135	80	10	1371	3475	134617733	134619864	0.000000e+00	3286.0
23	TraesCS1A01G271600	chr3A	93.890	491	27	3	906	1396	134617331	134617818	0.000000e+00	737.0
24	TraesCS1A01G271600	chr3A	82.340	470	62	15	13	463	299549954	299549487	4.210000e-104	388.0
25	TraesCS1A01G271600	chr3A	94.737	57	3	0	117	173	662882428	662882484	4.780000e-14	89.8
26	TraesCS1A01G271600	chr3A	92.982	57	4	0	117	173	647364410	647364354	2.220000e-12	84.2
27	TraesCS1A01G271600	chr4A	88.805	795	67	15	117	909	738595934	738596708	0.000000e+00	955.0
28	TraesCS1A01G271600	chr4A	94.545	110	6	0	10	119	738595784	738595893	1.660000e-38	171.0
29	TraesCS1A01G271600	chr3B	88.050	795	73	17	117	909	101366185	101365411	0.000000e+00	922.0
30	TraesCS1A01G271600	chr3B	81.633	784	78	23	1	745	71125585	71126341	1.070000e-164	590.0
31	TraesCS1A01G271600	chr3B	93.636	110	7	0	10	119	101366335	101366226	7.720000e-37	165.0
32	TraesCS1A01G271600	chr3B	93.636	110	7	0	10	119	775482685	775482576	7.720000e-37	165.0
33	TraesCS1A01G271600	chr7D	83.887	782	76	28	3	750	503690201	503690966	0.000000e+00	701.0
34	TraesCS1A01G271600	chr7D	94.545	110	6	0	10	119	244779036	244778927	1.660000e-38	171.0
35	TraesCS1A01G271600	chr6D	81.876	789	74	25	1	750	448408215	448408973	4.960000e-168	601.0
36	TraesCS1A01G271600	chr5B	80.964	809	84	37	1	750	554166136	554166933	8.360000e-161	577.0
37	TraesCS1A01G271600	chr3D	82.590	471	60	9	13	463	226604681	226604213	2.510000e-106	396.0
38	TraesCS1A01G271600	chr4D	95.455	110	5	0	10	119	220919032	220918923	3.560000e-40	176.0
39	TraesCS1A01G271600	chr6B	93.636	110	7	0	10	119	9940253	9940144	7.720000e-37	165.0
40	TraesCS1A01G271600	chr5D	93.636	110	7	0	10	119	425668695	425668586	7.720000e-37	165.0
41	TraesCS1A01G271600	chr5D	93.636	110	7	0	10	119	548206858	548206749	7.720000e-37	165.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G271600	chr1A	465250425	465253899	3474	False	6418.0	6418	100.0000	1	3475	1	chr1A.!!$F1	3474
1	TraesCS1A01G271600	chr1A	592813133	592813659	526	True	436.0	436	82.0180	217	750	1	chr1A.!!$R1	533
2	TraesCS1A01G271600	chr6A	204304423	204306532	2109	True	3554.0	3554	97.1090	1371	3475	1	chr6A.!!$R1	2104
3	TraesCS1A01G271600	chr6A	473515538	473517642	2104	False	3478.0	3478	96.4900	1371	3475	1	chr6A.!!$F1	2104
4	TraesCS1A01G271600	chr6A	136161813	136164325	2512	True	2094.0	3463	94.7400	906	3474	2	chr6A.!!$R2	2568
5	TraesCS1A01G271600	chr6A	213991727	213994230	2503	True	2091.0	3411	95.9840	906	3475	2	chr6A.!!$R3	2569
6	TraesCS1A01G271600	chr6A	518073131	518075642	2511	True	2082.5	3452	94.4980	906	3475	2	chr6A.!!$R4	2569
7	TraesCS1A01G271600	chr6A	328875923	328878438	2515	False	2074.5	3428	95.2395	906	3475	2	chr6A.!!$F2	2569
8	TraesCS1A01G271600	chr5A	109667608	109670110	2502	False	2147.5	3546	95.7015	908	3475	2	chr5A.!!$F2	2567
9	TraesCS1A01G271600	chr2A	616453842	616456355	2513	True	2089.5	3432	94.8520	906	3475	2	chr2A.!!$R4	2569
10	TraesCS1A01G271600	chr2A	44034176	44034938	762	False	599.0	599	81.7490	1	750	1	chr2A.!!$F1	749
11	TraesCS1A01G271600	chr2A	427514511	427515449	938	True	544.5	918	91.1705	10	909	2	chr2A.!!$R3	899
12	TraesCS1A01G271600	chr2A	777399633	777400157	524	True	424.0	424	81.6510	217	750	1	chr2A.!!$R2	533
13	TraesCS1A01G271600	chr3A	134617331	134619864	2533	False	2011.5	3286	94.2985	906	3475	2	chr3A.!!$F2	2569
14	TraesCS1A01G271600	chr4A	738595784	738596708	924	False	563.0	955	91.6750	10	909	2	chr4A.!!$F1	899
15	TraesCS1A01G271600	chr3B	71125585	71126341	756	False	590.0	590	81.6330	1	745	1	chr3B.!!$F1	744
16	TraesCS1A01G271600	chr3B	101365411	101366335	924	True	543.5	922	90.8430	10	909	2	chr3B.!!$R2	899
17	TraesCS1A01G271600	chr7D	503690201	503690966	765	False	701.0	701	83.8870	3	750	1	chr7D.!!$F1	747
18	TraesCS1A01G271600	chr6D	448408215	448408973	758	False	601.0	601	81.8760	1	750	1	chr6D.!!$F1	749
19	TraesCS1A01G271600	chr5B	554166136	554166933	797	False	577.0	577	80.9640	1	750	1	chr5B.!!$F1	749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
370	455	0.313987	CAGTTTTTCGTTGCTCCCCC	59.686	55.0	0.00	0.0	0.00	5.40	F
1303	1448	0.465824	CACCGTCGGTCTCCTCCTAT	60.466	60.0	15.67	0.0	31.02	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1559	1729	1.207089	CATAGAGGGAAGTTCACGCCA	59.793	52.381	5.12	0.00	0.00	5.69	R
3032	3227	1.004394	TCAGTGCTCCCTCGAGTTAGA	59.996	52.381	12.31	4.33	38.49	2.10	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	53	5.012239	TCATCTGAATAGCCTTGCTTGTTT	58.988	37.500	0.00	0.00	40.44	2.83
66	68	8.021396	CCTTGCTTGTTTAGTGTTCCTAATTAC	58.979	37.037	0.00	0.00	35.59	1.89
203	275	5.565439	GCAGGTTGCAGTTTCAAGTAATCAT	60.565	40.000	0.00	0.00	44.26	2.45
245	323	1.492133	TAGCCTGAACCCTGCAAGCT	61.492	55.000	0.00	0.00	36.95	3.74
308	388	3.129502	CCGCATCACCAGTGCAGG	61.130	66.667	0.00	0.00	42.62	4.85
316	396	0.673333	CACCAGTGCAGGCGTATCAA	60.673	55.000	0.00	0.00	0.00	2.57
318	398	0.447801	CCAGTGCAGGCGTATCAAAC	59.552	55.000	0.00	0.00	0.00	2.93
319	399	1.155889	CAGTGCAGGCGTATCAAACA	58.844	50.000	0.00	0.00	0.00	2.83
331	416	4.533222	CGTATCAAACAAACCAGTCCAAC	58.467	43.478	0.00	0.00	0.00	3.77
342	427	5.499004	AACCAGTCCAACTTCTAAGCATA	57.501	39.130	0.00	0.00	0.00	3.14
370	455	0.313987	CAGTTTTTCGTTGCTCCCCC	59.686	55.000	0.00	0.00	0.00	5.40
391	476	5.726793	CCCCCAGACTATACTGCCTTAATAT	59.273	44.000	0.00	0.00	36.67	1.28
409	518	5.751243	AATATCGACAGGGTTGCATAAAC	57.249	39.130	0.00	0.00	38.12	2.01
430	539	5.140747	ACTAAGAAACGCAGAGACAAGAT	57.859	39.130	0.00	0.00	0.00	2.40
437	546	3.193263	ACGCAGAGACAAGATAGCAATG	58.807	45.455	0.00	0.00	0.00	2.82
458	567	3.262420	GTGCAATGTCAATACCTCTCGT	58.738	45.455	0.00	0.00	0.00	4.18
542	668	4.621068	TCAAGCTCTGAAAACAACACAG	57.379	40.909	0.00	0.00	0.00	3.66
545	671	3.609853	AGCTCTGAAAACAACACAGACA	58.390	40.909	0.00	0.00	36.04	3.41
546	672	3.375299	AGCTCTGAAAACAACACAGACAC	59.625	43.478	0.00	0.00	36.04	3.67
549	675	3.438781	TCTGAAAACAACACAGACACCAC	59.561	43.478	0.00	0.00	36.04	4.16
550	676	3.149981	TGAAAACAACACAGACACCACA	58.850	40.909	0.00	0.00	0.00	4.17
551	677	3.570125	TGAAAACAACACAGACACCACAA	59.430	39.130	0.00	0.00	0.00	3.33
552	678	3.569250	AAACAACACAGACACCACAAC	57.431	42.857	0.00	0.00	0.00	3.32
553	679	2.192664	ACAACACAGACACCACAACA	57.807	45.000	0.00	0.00	0.00	3.33
554	680	1.810151	ACAACACAGACACCACAACAC	59.190	47.619	0.00	0.00	0.00	3.32
555	681	1.809547	CAACACAGACACCACAACACA	59.190	47.619	0.00	0.00	0.00	3.72
556	682	2.192664	ACACAGACACCACAACACAA	57.807	45.000	0.00	0.00	0.00	3.33
557	683	2.509569	ACACAGACACCACAACACAAA	58.490	42.857	0.00	0.00	0.00	2.83
558	684	2.887783	ACACAGACACCACAACACAAAA	59.112	40.909	0.00	0.00	0.00	2.44
559	685	3.241701	CACAGACACCACAACACAAAAC	58.758	45.455	0.00	0.00	0.00	2.43
641	773	0.798776	CGACGGCAGCAGAAAGATTT	59.201	50.000	0.00	0.00	0.00	2.17
642	774	1.464687	CGACGGCAGCAGAAAGATTTG	60.465	52.381	0.00	0.00	0.00	2.32
709	850	2.467946	CTTGAGCTGGCTTTGGCACG	62.468	60.000	0.00	0.00	40.87	5.34
737	878	4.103153	TGAATCCTGAACCAGAGAAACACT	59.897	41.667	0.00	0.00	32.44	3.55
751	893	9.311916	CCAGAGAAACACTGAAGAAATAGATAG	57.688	37.037	0.00	0.00	37.54	2.08
845	987	5.814705	GCAGTCTCACTTACAGATAATTGCT	59.185	40.000	0.00	0.00	0.00	3.91
846	988	6.980978	GCAGTCTCACTTACAGATAATTGCTA	59.019	38.462	0.00	0.00	0.00	3.49
854	996	3.152341	ACAGATAATTGCTAGGCATGGC	58.848	45.455	12.14	12.14	38.76	4.40
884	1026	8.904834	ACTATAACTAATCATCGACACACTCTT	58.095	33.333	0.00	0.00	0.00	2.85
899	1041	3.244249	ACACTCTTAGGTGTTGCCTCTTC	60.244	47.826	1.62	0.00	46.96	2.87
958	1100	9.706691	GATTAGAATAACTATTTGGATCACGGA	57.293	33.333	0.00	0.00	0.00	4.69
1184	1327	0.686769	CCTAACTCCGGCCACCTACT	60.687	60.000	2.24	0.00	0.00	2.57
1303	1448	0.465824	CACCGTCGGTCTCCTCCTAT	60.466	60.000	15.67	0.00	31.02	2.57
1313	1458	0.471211	CTCCTCCTATAACCCCGCCA	60.471	60.000	0.00	0.00	0.00	5.69
1355	1500	4.681978	AACTCCGCCACACGCCTC	62.682	66.667	0.00	0.00	41.76	4.70
1362	1507	4.873129	CCACACGCCTCGGATCCG	62.873	72.222	28.62	28.62	41.35	4.18
1363	1508	4.873129	CACACGCCTCGGATCCGG	62.873	72.222	32.79	22.45	40.25	5.14
1508	1656	3.032609	CATCCAGCCGTCGCGATC	61.033	66.667	14.06	5.25	41.18	3.69
1604	1774	1.612442	CGACCTTCCCTCCCCTTCA	60.612	63.158	0.00	0.00	0.00	3.02
1651	1821	0.863956	CCCTCCTACTCCTCCTCCAT	59.136	60.000	0.00	0.00	0.00	3.41
1674	1844	1.304381	GGCATGAACCTGGCCTTCA	60.304	57.895	3.32	6.30	44.32	3.02
1714	1884	1.608283	GCCCATATACTTCGGCCTCAC	60.608	57.143	0.00	0.00	35.23	3.51
2030	2200	0.669318	GACAAGGAATGCGACACCGA	60.669	55.000	0.00	0.00	38.22	4.69
2113	2283	0.737367	CTTCATCAAGCTCGCCGACA	60.737	55.000	0.00	0.00	0.00	4.35
2974	3169	2.745968	TCAAAAGGAGCAGGTGGTTTT	58.254	42.857	0.00	0.00	0.00	2.43
3051	3246	1.464734	TCTAACTCGAGGGAGCACTG	58.535	55.000	18.41	0.00	44.48	3.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	4.641396	AGTCTGCACTTAACACTATGCAA	58.359	39.130	0.00	0.00	46.75	4.08
51	53	6.210784	AGTCTGCACAGTAATTAGGAACACTA	59.789	38.462	0.00	0.00	0.00	2.74
66	68	9.774742	GTTAAATTAGGATTAAAGTCTGCACAG	57.225	33.333	0.00	0.00	0.00	3.66
203	275	4.159506	ACTTTCTTGTGCTTGTTTGCCTTA	59.840	37.500	0.00	0.00	0.00	2.69
245	323	6.264518	GGGTTCAGAAGTGAGGAAAACAATTA	59.735	38.462	0.00	0.00	32.98	1.40
308	388	2.550606	TGGACTGGTTTGTTTGATACGC	59.449	45.455	0.00	0.00	0.00	4.42
316	396	4.338400	GCTTAGAAGTTGGACTGGTTTGTT	59.662	41.667	0.00	0.00	0.00	2.83
318	398	3.882888	TGCTTAGAAGTTGGACTGGTTTG	59.117	43.478	0.00	0.00	0.00	2.93
319	399	4.164843	TGCTTAGAAGTTGGACTGGTTT	57.835	40.909	0.00	0.00	0.00	3.27
342	427	6.183360	GGAGCAACGAAAAACTGAATTTGTTT	60.183	34.615	0.00	5.15	39.03	2.83
370	455	7.094334	TGTCGATATTAAGGCAGTATAGTCTGG	60.094	40.741	0.00	0.00	36.12	3.86
391	476	2.851263	AGTTTATGCAACCCTGTCGA	57.149	45.000	0.00	0.00	35.77	4.20
409	518	5.231147	GCTATCTTGTCTCTGCGTTTCTTAG	59.769	44.000	0.00	0.00	0.00	2.18
430	539	4.949238	AGGTATTGACATTGCACATTGCTA	59.051	37.500	0.00	0.00	45.31	3.49
437	546	3.262420	ACGAGAGGTATTGACATTGCAC	58.738	45.455	0.00	0.00	0.00	4.57
458	567	1.305201	GTTGACGGCAACCTCAAAGA	58.695	50.000	24.05	0.00	46.80	2.52
542	668	2.983803	GTGTGTTTTGTGTTGTGGTGTC	59.016	45.455	0.00	0.00	0.00	3.67
545	671	2.887783	TCTGTGTGTTTTGTGTTGTGGT	59.112	40.909	0.00	0.00	0.00	4.16
546	672	3.500982	CTCTGTGTGTTTTGTGTTGTGG	58.499	45.455	0.00	0.00	0.00	4.17
549	675	4.433186	TTCCTCTGTGTGTTTTGTGTTG	57.567	40.909	0.00	0.00	0.00	3.33
550	676	4.279671	TGTTTCCTCTGTGTGTTTTGTGTT	59.720	37.500	0.00	0.00	0.00	3.32
551	677	3.823873	TGTTTCCTCTGTGTGTTTTGTGT	59.176	39.130	0.00	0.00	0.00	3.72
552	678	4.165779	GTGTTTCCTCTGTGTGTTTTGTG	58.834	43.478	0.00	0.00	0.00	3.33
553	679	3.823873	TGTGTTTCCTCTGTGTGTTTTGT	59.176	39.130	0.00	0.00	0.00	2.83
554	680	4.433186	TGTGTTTCCTCTGTGTGTTTTG	57.567	40.909	0.00	0.00	0.00	2.44
555	681	4.279671	TGTTGTGTTTCCTCTGTGTGTTTT	59.720	37.500	0.00	0.00	0.00	2.43
556	682	3.823873	TGTTGTGTTTCCTCTGTGTGTTT	59.176	39.130	0.00	0.00	0.00	2.83
557	683	3.417101	TGTTGTGTTTCCTCTGTGTGTT	58.583	40.909	0.00	0.00	0.00	3.32
558	684	3.066291	TGTTGTGTTTCCTCTGTGTGT	57.934	42.857	0.00	0.00	0.00	3.72
559	685	4.637483	AATGTTGTGTTTCCTCTGTGTG	57.363	40.909	0.00	0.00	0.00	3.82
629	761	4.218312	AGTGGGTTTCAAATCTTTCTGCT	58.782	39.130	0.00	0.00	0.00	4.24
630	762	4.037923	TGAGTGGGTTTCAAATCTTTCTGC	59.962	41.667	0.00	0.00	0.00	4.26
631	763	5.300286	AGTGAGTGGGTTTCAAATCTTTCTG	59.700	40.000	0.00	0.00	0.00	3.02
709	850	3.259374	TCTCTGGTTCAGGATTCACTCAC	59.741	47.826	0.00	0.00	31.51	3.51
772	914	4.825546	CAGACAAATTCTGCAAGTCACT	57.174	40.909	0.00	0.00	45.51	3.41
782	924	5.684704	TCTCACTCCAAACAGACAAATTCT	58.315	37.500	0.00	0.00	33.33	2.40
794	936	6.657541	ACTTTAAGTTGTGTTCTCACTCCAAA	59.342	34.615	0.00	0.00	44.14	3.28
818	960	7.459486	CAATTATCTGTAAGTGAGACTGCAAC	58.541	38.462	0.00	0.00	37.94	4.17
854	996	7.591795	GTGTGTCGATGATTAGTTATAGTCTGG	59.408	40.741	0.00	0.00	0.00	3.86
1042	1185	0.898789	GAGGGAGTCGTGGGAAGTGA	60.899	60.000	0.00	0.00	0.00	3.41
1383	1528	3.008517	TTGCAGCTGGATCCGGGA	61.009	61.111	22.38	0.00	0.00	5.14
1501	1649	2.060004	GATGGACGGTGAGATCGCGA	62.060	60.000	13.09	13.09	0.00	5.87
1508	1656	4.873129	CGGGCGATGGACGGTGAG	62.873	72.222	0.00	0.00	42.83	3.51
1559	1729	1.207089	CATAGAGGGAAGTTCACGCCA	59.793	52.381	5.12	0.00	0.00	5.69
1651	1821	2.672651	CCAGGTTCATGCCGCACA	60.673	61.111	0.00	0.00	0.00	4.57
2113	2283	1.690893	CTCGATCCAGATGACCATGGT	59.309	52.381	19.89	19.89	37.84	3.55
2628	2818	1.671261	CGCTAAGAACTCTGCTGCTGT	60.671	52.381	0.00	0.00	0.00	4.40
3032	3227	1.004394	TCAGTGCTCCCTCGAGTTAGA	59.996	52.381	12.31	4.33	38.49	2.10
3051	3246	7.119846	GGTATAAGAGCACATATTTGGATGGTC	59.880	40.741	0.00	0.00	39.35	4.02
3134	3332	5.683743	GCTTGTTGCTGTACGAACATTTTTA	59.316	36.000	5.93	0.00	38.95	1.52
3148	3346	2.582728	TTGTTTCCTGCTTGTTGCTG	57.417	45.000	0.00	0.00	43.37	4.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.