Multiple sequence alignment - TraesCS1A01G270800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G270800 chr1A 100.000 5387 0 0 1 5387 464841398 464836012 0.000000e+00 9949.0
1 TraesCS1A01G270800 chr1D 93.506 2926 116 38 578 3477 365731567 365728690 0.000000e+00 4283.0
2 TraesCS1A01G270800 chr1D 96.251 1387 43 5 3495 4880 365728705 365727327 0.000000e+00 2265.0
3 TraesCS1A01G270800 chr1D 91.522 519 31 6 4874 5387 365727170 365726660 0.000000e+00 702.0
4 TraesCS1A01G270800 chr1D 86.747 498 51 12 2 497 365732077 365731593 1.710000e-149 540.0
5 TraesCS1A01G270800 chr1D 90.625 128 11 1 4828 4955 95869004 95869130 9.280000e-38 169.0
6 TraesCS1A01G270800 chr1D 90.385 52 2 3 3297 3347 52604076 52604125 1.250000e-06 65.8
7 TraesCS1A01G270800 chr1B 92.569 2826 129 39 672 3477 489253244 489250480 0.000000e+00 3980.0
8 TraesCS1A01G270800 chr1B 93.730 1882 80 15 3495 5372 489250495 489248648 0.000000e+00 2787.0
9 TraesCS1A01G270800 chr1B 87.640 178 10 7 457 622 489253425 489253248 4.260000e-46 196.0
10 TraesCS1A01G270800 chr1B 94.068 118 7 0 4825 4942 136627368 136627485 4.290000e-41 180.0
11 TraesCS1A01G270800 chr1B 91.406 128 10 1 4828 4955 156850575 156850449 1.990000e-39 174.0
12 TraesCS1A01G270800 chr7A 88.435 147 16 1 4828 4973 705226477 705226623 5.550000e-40 176.0
13 TraesCS1A01G270800 chr7D 88.356 146 14 2 4827 4971 242791341 242791484 7.170000e-39 172.0
14 TraesCS1A01G270800 chr3D 91.270 126 10 1 4828 4953 535782670 535782546 2.580000e-38 171.0
15 TraesCS1A01G270800 chr3D 91.089 101 9 0 2029 2129 487808646 487808746 2.620000e-28 137.0
16 TraesCS1A01G270800 chr6D 87.333 150 16 2 4828 4974 296197005 296196856 9.280000e-38 169.0
17 TraesCS1A01G270800 chr3B 91.262 103 9 0 2027 2129 650798574 650798676 2.020000e-29 141.0
18 TraesCS1A01G270800 chr3A 90.099 101 10 0 2029 2129 631577020 631577120 1.220000e-26 132.0
19 TraesCS1A01G270800 chr3A 94.231 52 3 0 5027 5078 515889304 515889355 4.470000e-11 80.5
20 TraesCS1A01G270800 chr5D 96.154 52 1 1 5031 5081 191259071 191259020 3.460000e-12 84.2
21 TraesCS1A01G270800 chr5A 91.935 62 2 3 5021 5081 228887826 228887885 3.460000e-12 84.2
22 TraesCS1A01G270800 chr5A 92.857 56 3 1 5027 5081 575699257 575699202 4.470000e-11 80.5
23 TraesCS1A01G270800 chr2B 97.917 48 1 0 5030 5077 136176107 136176060 3.460000e-12 84.2
24 TraesCS1A01G270800 chr2A 97.917 48 1 0 5030 5077 84959161 84959114 3.460000e-12 84.2
25 TraesCS1A01G270800 chr2A 97.917 48 1 0 5030 5077 84974382 84974335 3.460000e-12 84.2
26 TraesCS1A01G270800 chr5B 100.000 28 0 0 5251 5278 624199384 624199411 1.000000e-02 52.8
27 TraesCS1A01G270800 chr5B 100.000 28 0 0 5251 5278 627799781 627799808 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G270800 chr1A 464836012 464841398 5386 True 9949.0 9949 100.0000 1 5387 1 chr1A.!!$R1 5386
1 TraesCS1A01G270800 chr1D 365726660 365732077 5417 True 1947.5 4283 92.0065 2 5387 4 chr1D.!!$R1 5385
2 TraesCS1A01G270800 chr1B 489248648 489253425 4777 True 2321.0 3980 91.3130 457 5372 3 chr1B.!!$R2 4915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 527 0.250901 ATAGGGTTCGGGCATGCATC 60.251 55.000 21.36 10.11 0.00 3.91 F
1177 1199 1.367840 GTGTTGCTCTCCTGTCCGT 59.632 57.895 0.00 0.00 0.00 4.69 F
1539 1563 0.390124 CTGCACTTGTTTGGCACCAT 59.610 50.000 0.00 0.00 33.34 3.55 F
1541 1565 0.600782 GCACTTGTTTGGCACCATGG 60.601 55.000 11.19 11.19 0.00 3.66 F
1542 1566 0.752054 CACTTGTTTGGCACCATGGT 59.248 50.000 13.00 13.00 0.00 3.55 F
2676 2717 0.793104 GATGTGCTTGCGTTTACGGC 60.793 55.000 4.29 0.08 40.23 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1475 0.743345 GCGCCCGTCCAAACTCTAAT 60.743 55.000 0.00 0.0 0.00 1.73 R
2435 2470 0.803117 GGAAGAACCTTAAGTGGCGC 59.197 55.000 0.00 0.0 35.41 6.53 R
3180 3225 0.178068 AGGCCATGCACTACTAACCG 59.822 55.000 5.01 0.0 0.00 4.44 R
3495 3547 0.678048 GGCGTGGCCTCTTTCTCATT 60.678 55.000 3.32 0.0 46.69 2.57 R
3496 3548 1.078143 GGCGTGGCCTCTTTCTCAT 60.078 57.895 3.32 0.0 46.69 2.90 R
4591 4644 0.397941 TGTAAACCTCTGCAGCAGCT 59.602 50.000 18.43 0.0 42.74 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.231297 AGACTCAATTTTCTTGAAAATATCGGA 57.769 29.630 18.08 13.17 32.51 4.55
56 57 7.250569 TCGGATTATTTGAAGAAACAATCTGC 58.749 34.615 0.00 0.00 38.79 4.26
68 69 4.630894 AACAATCTGCGTTTCAAAGTCA 57.369 36.364 0.00 0.00 0.00 3.41
79 80 4.495844 CGTTTCAAAGTCAGTGAGGGAAAC 60.496 45.833 19.14 19.14 39.26 2.78
176 177 8.453238 TTGACTATTTAGGTAAAACTGCAACA 57.547 30.769 0.00 0.00 0.00 3.33
177 178 7.867752 TGACTATTTAGGTAAAACTGCAACAC 58.132 34.615 0.00 0.00 0.00 3.32
178 179 7.717875 TGACTATTTAGGTAAAACTGCAACACT 59.282 33.333 0.00 0.00 0.00 3.55
179 180 8.459911 ACTATTTAGGTAAAACTGCAACACTT 57.540 30.769 0.00 0.00 0.00 3.16
201 202 6.601613 ACTTTAATGGATCGCCTAAACATCAA 59.398 34.615 0.00 0.00 34.31 2.57
204 205 6.469782 AATGGATCGCCTAAACATCAATTT 57.530 33.333 0.00 0.00 34.31 1.82
206 207 5.649557 TGGATCGCCTAAACATCAATTTTG 58.350 37.500 0.00 0.00 34.31 2.44
207 208 4.504097 GGATCGCCTAAACATCAATTTTGC 59.496 41.667 0.00 0.00 0.00 3.68
208 209 3.843999 TCGCCTAAACATCAATTTTGCC 58.156 40.909 0.00 0.00 0.00 4.52
210 211 4.702612 TCGCCTAAACATCAATTTTGCCTA 59.297 37.500 0.00 0.00 0.00 3.93
211 212 5.184096 TCGCCTAAACATCAATTTTGCCTAA 59.816 36.000 0.00 0.00 0.00 2.69
212 213 6.042143 CGCCTAAACATCAATTTTGCCTAAT 58.958 36.000 0.00 0.00 0.00 1.73
213 214 7.067615 TCGCCTAAACATCAATTTTGCCTAATA 59.932 33.333 0.00 0.00 0.00 0.98
227 228 5.484173 TGCCTAATAAAGATGCAAACGAG 57.516 39.130 0.00 0.00 0.00 4.18
229 230 5.064707 TGCCTAATAAAGATGCAAACGAGTC 59.935 40.000 0.00 0.00 0.00 3.36
236 237 4.749245 AGATGCAAACGAGTCGATTTTT 57.251 36.364 21.50 6.67 0.00 1.94
268 269 2.678190 CGTTCATCTTCTTCCTCCCACC 60.678 54.545 0.00 0.00 0.00 4.61
271 272 3.647636 TCATCTTCTTCCTCCCACCTAG 58.352 50.000 0.00 0.00 0.00 3.02
274 275 3.442076 TCTTCTTCCTCCCACCTAGTTC 58.558 50.000 0.00 0.00 0.00 3.01
300 301 2.980548 ACCACCCTACAACCTAGTTCA 58.019 47.619 0.00 0.00 0.00 3.18
306 307 2.740447 CCTACAACCTAGTTCAAACCGC 59.260 50.000 0.00 0.00 0.00 5.68
315 316 3.723097 TTCAAACCGCCTGCCACCA 62.723 57.895 0.00 0.00 0.00 4.17
365 366 2.097038 CCGCTCCGTCTTGCTTGAG 61.097 63.158 0.00 0.00 0.00 3.02
391 392 4.662961 TCCGCCATGCTATCGCCG 62.663 66.667 0.00 0.00 34.43 6.46
428 429 3.703127 GCCCCCTTCTCCGACGTT 61.703 66.667 0.00 0.00 0.00 3.99
430 431 2.264794 CCCCTTCTCCGACGTTGG 59.735 66.667 16.40 16.40 0.00 3.77
443 445 2.604382 GTTGGCAAGCACCCCCAT 60.604 61.111 0.00 0.00 0.00 4.00
449 451 1.978617 CAAGCACCCCCATCCACAC 60.979 63.158 0.00 0.00 0.00 3.82
451 453 1.803453 AAGCACCCCCATCCACACAT 61.803 55.000 0.00 0.00 0.00 3.21
461 463 3.561097 CCCATCCACACATGTCAAACCTA 60.561 47.826 0.00 0.00 0.00 3.08
499 501 4.794439 CGCCGCGTCCTCACATGA 62.794 66.667 4.92 0.00 0.00 3.07
518 527 0.250901 ATAGGGTTCGGGCATGCATC 60.251 55.000 21.36 10.11 0.00 3.91
540 549 3.932710 CGAGGAATCGACTGATCCAAAAA 59.067 43.478 10.05 0.00 32.24 1.94
543 552 6.257849 CGAGGAATCGACTGATCCAAAAATTA 59.742 38.462 10.05 0.00 32.24 1.40
610 624 8.605325 ACTACTATAAGCCGGGATAACATTAT 57.395 34.615 2.18 0.00 0.00 1.28
654 668 4.036852 GCAGTCTACTGTTGAAGCCTTTTT 59.963 41.667 11.54 0.00 45.45 1.94
655 669 5.514279 CAGTCTACTGTTGAAGCCTTTTTG 58.486 41.667 1.81 0.00 39.09 2.44
656 670 4.036852 AGTCTACTGTTGAAGCCTTTTTGC 59.963 41.667 0.00 0.00 0.00 3.68
689 703 4.507756 GCAGGAAAAGGATTGTTGAAACAC 59.492 41.667 0.00 0.00 38.92 3.32
736 750 2.865343 GGTACGGATACAGTCACAGG 57.135 55.000 0.00 0.00 32.40 4.00
737 751 2.097825 GGTACGGATACAGTCACAGGT 58.902 52.381 0.00 0.00 32.40 4.00
738 752 2.098770 GGTACGGATACAGTCACAGGTC 59.901 54.545 0.00 0.00 32.40 3.85
739 753 1.919240 ACGGATACAGTCACAGGTCA 58.081 50.000 0.00 0.00 0.00 4.02
740 754 1.544691 ACGGATACAGTCACAGGTCAC 59.455 52.381 0.00 0.00 0.00 3.67
741 755 1.544246 CGGATACAGTCACAGGTCACA 59.456 52.381 0.00 0.00 0.00 3.58
742 756 2.416027 CGGATACAGTCACAGGTCACAG 60.416 54.545 0.00 0.00 0.00 3.66
827 841 3.756677 CACGCACGAGACGCACAG 61.757 66.667 0.00 0.00 0.00 3.66
828 842 3.961197 ACGCACGAGACGCACAGA 61.961 61.111 0.00 0.00 0.00 3.41
829 843 3.168604 CGCACGAGACGCACAGAG 61.169 66.667 0.00 0.00 0.00 3.35
830 844 3.474034 GCACGAGACGCACAGAGC 61.474 66.667 0.00 0.00 40.87 4.09
883 897 3.767630 GACCACACCGCCACCTGTT 62.768 63.158 0.00 0.00 0.00 3.16
898 913 2.279054 GTTACCCGCCGGTCGATC 60.279 66.667 17.96 0.00 43.29 3.69
1141 1158 2.841988 GGCTCCTCCGCTCCTCAT 60.842 66.667 0.00 0.00 0.00 2.90
1142 1159 2.439104 GGCTCCTCCGCTCCTCATT 61.439 63.158 0.00 0.00 0.00 2.57
1171 1193 2.839486 TCGATTTGTGTTGCTCTCCT 57.161 45.000 0.00 0.00 0.00 3.69
1172 1194 2.416747 TCGATTTGTGTTGCTCTCCTG 58.583 47.619 0.00 0.00 0.00 3.86
1177 1199 1.367840 GTGTTGCTCTCCTGTCCGT 59.632 57.895 0.00 0.00 0.00 4.69
1183 1206 1.592223 CTCTCCTGTCCGTGGTTCC 59.408 63.158 0.00 0.00 0.00 3.62
1193 1216 4.090057 GTGGTTCCTTCTGCGCGC 62.090 66.667 27.26 27.26 0.00 6.86
1197 1220 4.002506 TTCCTTCTGCGCGCTCCA 62.003 61.111 33.29 11.56 0.00 3.86
1212 1235 3.278574 CGCTCCAAATTGGGTCTGAATA 58.721 45.455 12.67 0.00 38.32 1.75
1220 1243 6.444633 CAAATTGGGTCTGAATATCTGATGC 58.555 40.000 0.00 0.00 0.00 3.91
1392 1415 3.165071 CCTCTTGGGTTTAATTGGCTGT 58.835 45.455 0.00 0.00 0.00 4.40
1442 1465 5.195379 GTGACGTGTAGTGAATGTGTTTTC 58.805 41.667 0.00 0.00 0.00 2.29
1491 1514 2.546778 CGTGGCGTGGATATGTAACTT 58.453 47.619 0.00 0.00 0.00 2.66
1537 1561 0.459489 TTCTGCACTTGTTTGGCACC 59.541 50.000 0.00 0.00 33.34 5.01
1539 1563 0.390124 CTGCACTTGTTTGGCACCAT 59.610 50.000 0.00 0.00 33.34 3.55
1541 1565 0.600782 GCACTTGTTTGGCACCATGG 60.601 55.000 11.19 11.19 0.00 3.66
1542 1566 0.752054 CACTTGTTTGGCACCATGGT 59.248 50.000 13.00 13.00 0.00 3.55
1544 1568 0.752054 CTTGTTTGGCACCATGGTGT 59.248 50.000 38.41 7.98 46.90 4.16
1545 1569 1.138661 CTTGTTTGGCACCATGGTGTT 59.861 47.619 38.41 7.17 46.90 3.32
1546 1570 1.198713 TGTTTGGCACCATGGTGTTT 58.801 45.000 38.41 6.76 46.90 2.83
1554 1578 1.953686 CACCATGGTGTTTCGTTTCCT 59.046 47.619 32.94 0.00 40.91 3.36
1567 1591 7.698970 GTGTTTCGTTTCCTATTTCAAAGTGAA 59.301 33.333 0.00 0.00 34.03 3.18
1716 1740 2.921754 CGAGGACGAGGTCACAATTTAC 59.078 50.000 0.00 0.00 42.66 2.01
1721 1745 3.810941 GACGAGGTCACAATTTACAACCA 59.189 43.478 0.00 0.00 32.09 3.67
1730 1754 5.049060 TCACAATTTACAACCATCGTCTTGG 60.049 40.000 1.17 1.17 42.82 3.61
1993 2023 3.737559 ATAAATGTGAGTGGGCCTGAA 57.262 42.857 4.53 0.00 0.00 3.02
2178 2208 1.092348 GGTCCACGCCTTGTAAATCC 58.908 55.000 0.00 0.00 0.00 3.01
2179 2209 1.339727 GGTCCACGCCTTGTAAATCCT 60.340 52.381 0.00 0.00 0.00 3.24
2180 2210 1.737793 GTCCACGCCTTGTAAATCCTG 59.262 52.381 0.00 0.00 0.00 3.86
2266 2299 2.254546 TCGCCATTTTGTGACAGTCT 57.745 45.000 1.31 0.00 0.00 3.24
2296 2329 0.819582 ATTCAAGGCCCAAATCTGCG 59.180 50.000 0.00 0.00 0.00 5.18
2360 2393 4.566488 GCCAGGAATATGATGGGAAGGTAG 60.566 50.000 0.00 0.00 34.52 3.18
2435 2470 2.015736 AAGCACATCTGGTAAGAGCG 57.984 50.000 0.00 0.00 35.37 5.03
2466 2501 4.559862 AGGTTCTTCCTTTCACGATGAT 57.440 40.909 0.00 0.00 45.67 2.45
2467 2502 4.256920 AGGTTCTTCCTTTCACGATGATG 58.743 43.478 0.00 0.00 45.67 3.07
2468 2503 3.181506 GGTTCTTCCTTTCACGATGATGC 60.182 47.826 0.00 0.00 0.00 3.91
2469 2504 3.333029 TCTTCCTTTCACGATGATGCA 57.667 42.857 0.00 0.00 0.00 3.96
2499 2539 5.746307 ACATGATGTTGACATACTGCATC 57.254 39.130 0.00 0.00 36.57 3.91
2508 2549 6.149308 TGTTGACATACTGCATCACTTAAAGG 59.851 38.462 0.00 0.00 0.00 3.11
2676 2717 0.793104 GATGTGCTTGCGTTTACGGC 60.793 55.000 4.29 0.08 40.23 5.68
2877 2918 7.959689 TTTTCACCATTTCATACAATTGTGG 57.040 32.000 21.42 13.63 32.89 4.17
2922 2965 2.507407 TATTCAGACTTTGGCACCCC 57.493 50.000 0.00 0.00 0.00 4.95
2930 2973 1.063266 ACTTTGGCACCCCTTTGAGAA 60.063 47.619 0.00 0.00 0.00 2.87
3048 3091 8.110860 AGTTATTTGATTGAACACCCTGTTAG 57.889 34.615 0.00 0.00 41.28 2.34
3125 3170 9.606631 ACTAGGAATTATCTTGCTAAGTTCTTG 57.393 33.333 0.00 0.00 0.00 3.02
3128 3173 6.969473 GGAATTATCTTGCTAAGTTCTTGTGC 59.031 38.462 0.00 1.36 0.00 4.57
3150 3195 6.407475 GCGTTCTGCAAAATTTAATGGATT 57.593 33.333 0.00 0.00 45.45 3.01
3180 3225 3.662759 TTTATCCAACACCCTCCATCC 57.337 47.619 0.00 0.00 0.00 3.51
3182 3227 1.635817 ATCCAACACCCTCCATCCGG 61.636 60.000 0.00 0.00 0.00 5.14
3307 3352 7.026562 TGATGTTGTAACACAAACAAACTCTG 58.973 34.615 0.00 0.00 40.15 3.35
3308 3353 5.157781 TGTTGTAACACAAACAAACTCTGC 58.842 37.500 0.00 0.00 40.15 4.26
3419 3471 8.143835 CCTATCTTTGTTGACCAAAATCAGTTT 58.856 33.333 0.00 0.00 42.31 2.66
3427 3479 6.403866 TGACCAAAATCAGTTTATTGCTGT 57.596 33.333 0.00 0.00 35.60 4.40
3439 3491 7.815068 TCAGTTTATTGCTGTCTTCTCTTAGAC 59.185 37.037 0.00 0.00 43.86 2.59
3454 3506 9.922305 CTTCTCTTAGACTGTTTTGTTTTACAG 57.078 33.333 0.00 0.00 45.61 2.74
3477 3529 1.076024 TGCCAAATGAGAAAGAGGCCT 59.924 47.619 3.86 3.86 41.33 5.19
3478 3530 2.174360 GCCAAATGAGAAAGAGGCCTT 58.826 47.619 6.77 0.00 36.17 4.35
3479 3531 2.094338 GCCAAATGAGAAAGAGGCCTTG 60.094 50.000 6.77 0.00 36.17 3.61
3480 3532 2.094338 CCAAATGAGAAAGAGGCCTTGC 60.094 50.000 6.77 0.00 31.91 4.01
3490 3542 4.408378 GGCCTTGCCTCCGTTTAA 57.592 55.556 0.00 0.00 46.69 1.52
3491 3543 2.648593 GGCCTTGCCTCCGTTTAAA 58.351 52.632 0.00 0.00 46.69 1.52
3492 3544 0.963225 GGCCTTGCCTCCGTTTAAAA 59.037 50.000 0.00 0.00 46.69 1.52
3493 3545 1.341852 GGCCTTGCCTCCGTTTAAAAA 59.658 47.619 0.00 0.00 46.69 1.94
3592 3644 6.540551 GGCTTTAGAATAAGAAGAGGGAAGTG 59.459 42.308 0.00 0.00 0.00 3.16
3605 3657 1.340114 GGGAAGTGGGTGAAGGTCATC 60.340 57.143 0.00 0.00 0.00 2.92
3839 3892 6.146837 CCAAAATTTACAATCACAAATGCCGA 59.853 34.615 0.00 0.00 0.00 5.54
3862 3915 2.253603 GCTTATCTTTGTTTGCAGCGG 58.746 47.619 0.00 0.00 0.00 5.52
3968 4021 0.971386 TCCAACGAAGGTACTGGTCC 59.029 55.000 0.00 0.00 40.86 4.46
4002 4055 0.647410 GCAAGATCGACGTGTCCATG 59.353 55.000 0.00 0.00 0.00 3.66
4009 4062 1.544246 TCGACGTGTCCATGAGTGAAT 59.456 47.619 0.00 0.00 0.00 2.57
4026 4079 3.127548 GTGAATCCGCTTTGATGTGACAT 59.872 43.478 0.00 0.00 0.00 3.06
4278 4331 6.763610 AGTTATCGGATGATGAGGAAAAGAAC 59.236 38.462 0.00 0.00 35.99 3.01
4296 4349 1.800315 CGCGAAGGTCAGTGTACCG 60.800 63.158 0.00 0.00 44.77 4.02
4304 4357 1.336609 GGTCAGTGTACCGGAACAGAC 60.337 57.143 9.46 15.09 0.00 3.51
4373 4426 1.476007 GGGGAGCTGGATATGAGCGT 61.476 60.000 0.00 0.00 41.61 5.07
4416 4469 0.618680 TGATGTGGGACTGGGAGGAG 60.619 60.000 0.00 0.00 0.00 3.69
4418 4471 1.826384 ATGTGGGACTGGGAGGAGGA 61.826 60.000 0.00 0.00 0.00 3.71
4419 4472 1.003573 GTGGGACTGGGAGGAGGAT 59.996 63.158 0.00 0.00 0.00 3.24
4420 4473 0.264955 GTGGGACTGGGAGGAGGATA 59.735 60.000 0.00 0.00 0.00 2.59
4486 4539 2.290514 TGCTTTTCTGCTGCAGAGGTAT 60.291 45.455 28.91 0.00 41.75 2.73
4582 4635 5.025453 AGGGAATCAATTTGGTATGTGCTT 58.975 37.500 0.00 0.00 0.00 3.91
4583 4636 5.484998 AGGGAATCAATTTGGTATGTGCTTT 59.515 36.000 0.00 0.00 0.00 3.51
4584 4637 6.013466 AGGGAATCAATTTGGTATGTGCTTTT 60.013 34.615 0.00 0.00 0.00 2.27
4585 4638 7.180051 AGGGAATCAATTTGGTATGTGCTTTTA 59.820 33.333 0.00 0.00 0.00 1.52
4596 4649 6.811170 TGGTATGTGCTTTTATTTTTAGCTGC 59.189 34.615 0.00 0.00 35.93 5.25
4598 4651 6.956299 ATGTGCTTTTATTTTTAGCTGCTG 57.044 33.333 13.43 0.00 35.93 4.41
4617 4670 6.996969 CTGCTGCAGAGGTTTACATCAAACA 61.997 44.000 24.88 0.00 40.04 2.83
4650 4703 2.046892 AGGGCTGCGTGCTTACTG 60.047 61.111 0.00 0.00 42.39 2.74
4894 5110 9.477484 AATATGGACTACATACGAACTGAAATC 57.523 33.333 0.00 0.00 44.41 2.17
5080 5300 2.832643 TGGAACGGAGGGAGTACATA 57.167 50.000 0.00 0.00 0.00 2.29
5300 5521 5.252397 ACCCGATCCACATAGGTAGAGTATA 59.748 44.000 0.00 0.00 39.02 1.47
5332 5553 2.580276 CCCATGGGCATGCACAAC 59.420 61.111 29.25 10.35 37.49 3.32
5333 5554 2.284276 CCCATGGGCATGCACAACA 61.284 57.895 29.25 15.99 37.49 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.195244 CGCAGATTGTTTCTTCAAATAATCCG 59.805 38.462 11.24 7.03 44.96 4.18
33 34 7.029563 ACGCAGATTGTTTCTTCAAATAATCC 58.970 34.615 11.24 0.89 44.96 3.01
35 36 8.816640 AAACGCAGATTGTTTCTTCAAATAAT 57.183 26.923 0.00 0.00 36.36 1.28
56 57 2.833794 TCCCTCACTGACTTTGAAACG 58.166 47.619 0.00 0.00 0.00 3.60
104 105 9.577110 CTGCATTTAGAAATACAACAATCACAT 57.423 29.630 0.00 0.00 0.00 3.21
105 106 8.575589 ACTGCATTTAGAAATACAACAATCACA 58.424 29.630 0.00 0.00 0.00 3.58
110 111 8.020819 GCACTACTGCATTTAGAAATACAACAA 58.979 33.333 9.02 0.00 43.62 2.83
111 112 7.361713 GGCACTACTGCATTTAGAAATACAACA 60.362 37.037 9.02 0.00 46.28 3.33
113 114 6.884295 AGGCACTACTGCATTTAGAAATACAA 59.116 34.615 9.02 0.00 46.28 2.41
114 115 6.414732 AGGCACTACTGCATTTAGAAATACA 58.585 36.000 9.02 0.00 46.28 2.29
115 116 6.927294 AGGCACTACTGCATTTAGAAATAC 57.073 37.500 9.02 0.00 46.28 1.89
149 150 9.908152 GTTGCAGTTTTACCTAAATAGTCAATT 57.092 29.630 0.00 0.00 0.00 2.32
170 171 2.163412 GGCGATCCATTAAAGTGTTGCA 59.837 45.455 0.00 0.00 0.00 4.08
176 177 6.119536 TGATGTTTAGGCGATCCATTAAAGT 58.880 36.000 0.00 0.00 33.74 2.66
177 178 6.618287 TGATGTTTAGGCGATCCATTAAAG 57.382 37.500 0.00 0.00 33.74 1.85
178 179 7.581213 ATTGATGTTTAGGCGATCCATTAAA 57.419 32.000 0.00 0.00 33.74 1.52
179 180 7.581213 AATTGATGTTTAGGCGATCCATTAA 57.419 32.000 0.00 0.00 33.74 1.40
204 205 5.414454 ACTCGTTTGCATCTTTATTAGGCAA 59.586 36.000 0.00 0.00 42.15 4.52
206 207 5.485662 ACTCGTTTGCATCTTTATTAGGC 57.514 39.130 0.00 0.00 0.00 3.93
207 208 5.518847 TCGACTCGTTTGCATCTTTATTAGG 59.481 40.000 0.00 0.00 0.00 2.69
208 209 6.569228 TCGACTCGTTTGCATCTTTATTAG 57.431 37.500 0.00 0.00 0.00 1.73
210 211 6.422776 AATCGACTCGTTTGCATCTTTATT 57.577 33.333 0.00 0.00 0.00 1.40
211 212 6.422776 AAATCGACTCGTTTGCATCTTTAT 57.577 33.333 0.00 0.00 0.00 1.40
212 213 5.856126 AAATCGACTCGTTTGCATCTTTA 57.144 34.783 0.00 0.00 0.00 1.85
213 214 4.749245 AAATCGACTCGTTTGCATCTTT 57.251 36.364 0.00 0.00 0.00 2.52
236 237 4.710324 AGAAGATGAACGGTGTGGTAAAA 58.290 39.130 0.00 0.00 0.00 1.52
240 241 2.550208 GGAAGAAGATGAACGGTGTGGT 60.550 50.000 0.00 0.00 0.00 4.16
268 269 1.657804 AGGGTGGTTGGAGGAACTAG 58.342 55.000 0.00 0.00 41.55 2.57
271 272 1.061546 TGTAGGGTGGTTGGAGGAAC 58.938 55.000 0.00 0.00 0.00 3.62
274 275 0.037734 GGTTGTAGGGTGGTTGGAGG 59.962 60.000 0.00 0.00 0.00 4.30
346 347 3.793144 CAAGCAAGACGGAGCGGC 61.793 66.667 0.00 0.00 35.48 6.53
391 392 0.544697 TTTAGAGGGATGGCCGGAAC 59.455 55.000 5.05 0.00 33.83 3.62
428 429 4.380945 GGATGGGGGTGCTTGCCA 62.381 66.667 0.00 0.00 0.00 4.92
430 431 3.070576 GTGGATGGGGGTGCTTGC 61.071 66.667 0.00 0.00 0.00 4.01
443 445 2.761559 CGTAGGTTTGACATGTGTGGA 58.238 47.619 1.15 0.00 0.00 4.02
449 451 1.369625 GGAGGCGTAGGTTTGACATG 58.630 55.000 0.00 0.00 0.00 3.21
451 453 1.675219 GGGAGGCGTAGGTTTGACA 59.325 57.895 0.00 0.00 0.00 3.58
499 501 0.250901 GATGCATGCCCGAACCCTAT 60.251 55.000 16.68 0.00 0.00 2.57
518 527 2.871182 TTGGATCAGTCGATTCCTCG 57.129 50.000 0.00 0.00 46.41 4.63
540 549 7.201617 GCTAATCCTAAGTTGCGTGAAACTAAT 60.202 37.037 0.00 0.00 39.48 1.73
543 552 4.392138 GCTAATCCTAAGTTGCGTGAAACT 59.608 41.667 0.00 0.00 42.21 2.66
583 592 5.638133 TGTTATCCCGGCTTATAGTAGTCT 58.362 41.667 0.00 0.00 0.00 3.24
584 593 5.972107 TGTTATCCCGGCTTATAGTAGTC 57.028 43.478 0.00 0.00 0.00 2.59
591 600 8.938883 AGATGATATAATGTTATCCCGGCTTAT 58.061 33.333 0.00 0.00 0.00 1.73
610 624 4.342092 TGCAGATGGTTCGAGAAGATGATA 59.658 41.667 0.00 0.00 0.00 2.15
616 630 2.094286 AGACTGCAGATGGTTCGAGAAG 60.094 50.000 23.35 0.00 0.00 2.85
656 670 1.919956 CTTTTCCTGCTGCAGCTCCG 61.920 60.000 36.61 24.21 42.66 4.63
664 678 4.589216 TTCAACAATCCTTTTCCTGCTG 57.411 40.909 0.00 0.00 0.00 4.41
736 750 0.247736 ATTCCGAGACTGGCTGTGAC 59.752 55.000 0.29 0.00 0.00 3.67
737 751 0.532573 GATTCCGAGACTGGCTGTGA 59.467 55.000 0.29 0.00 0.00 3.58
738 752 0.534412 AGATTCCGAGACTGGCTGTG 59.466 55.000 0.29 0.00 0.00 3.66
739 753 0.820871 GAGATTCCGAGACTGGCTGT 59.179 55.000 0.00 0.00 0.00 4.40
740 754 0.248825 CGAGATTCCGAGACTGGCTG 60.249 60.000 0.00 0.00 0.00 4.85
741 755 1.388065 CCGAGATTCCGAGACTGGCT 61.388 60.000 0.00 0.00 0.00 4.75
742 756 1.066587 CCGAGATTCCGAGACTGGC 59.933 63.158 0.00 0.00 0.00 4.85
1149 1171 4.813161 CAGGAGAGCAACACAAATCGATAT 59.187 41.667 0.00 0.00 0.00 1.63
1159 1181 0.946221 CACGGACAGGAGAGCAACAC 60.946 60.000 0.00 0.00 0.00 3.32
1171 1193 1.070786 GCAGAAGGAACCACGGACA 59.929 57.895 0.00 0.00 0.00 4.02
1172 1194 2.027625 CGCAGAAGGAACCACGGAC 61.028 63.158 0.00 0.00 0.00 4.79
1177 1199 4.314440 AGCGCGCAGAAGGAACCA 62.314 61.111 35.10 0.00 0.00 3.67
1183 1206 0.795735 CAATTTGGAGCGCGCAGAAG 60.796 55.000 35.10 10.34 0.00 2.85
1193 1216 6.359804 TCAGATATTCAGACCCAATTTGGAG 58.640 40.000 17.24 9.35 40.96 3.86
1197 1220 5.537674 GGCATCAGATATTCAGACCCAATTT 59.462 40.000 0.00 0.00 0.00 1.82
1212 1235 3.769369 CTGCGGCCAGGCATCAGAT 62.769 63.158 21.59 0.00 42.99 2.90
1220 1243 3.197790 CGTCAATCTGCGGCCAGG 61.198 66.667 2.24 0.00 39.61 4.45
1353 1376 6.863126 CCAAGAGGACAAACACAATGAATAAC 59.137 38.462 0.00 0.00 36.89 1.89
1442 1465 6.250819 CGTCCAAACTCTAATAAAGCATGTG 58.749 40.000 0.00 0.00 0.00 3.21
1450 1473 2.896168 CGCCCGTCCAAACTCTAATAA 58.104 47.619 0.00 0.00 0.00 1.40
1451 1474 1.472026 GCGCCCGTCCAAACTCTAATA 60.472 52.381 0.00 0.00 0.00 0.98
1452 1475 0.743345 GCGCCCGTCCAAACTCTAAT 60.743 55.000 0.00 0.00 0.00 1.73
1476 1499 7.979444 ATTCCCAATAAGTTACATATCCACG 57.021 36.000 0.00 0.00 0.00 4.94
1478 1501 9.362151 GGAAATTCCCAATAAGTTACATATCCA 57.638 33.333 0.00 0.00 0.00 3.41
1479 1502 8.512138 CGGAAATTCCCAATAAGTTACATATCC 58.488 37.037 6.42 0.00 31.13 2.59
1480 1503 9.280174 TCGGAAATTCCCAATAAGTTACATATC 57.720 33.333 6.42 0.00 31.13 1.63
1491 1514 5.045869 ACTTCAGACTCGGAAATTCCCAATA 60.046 40.000 6.42 0.00 31.13 1.90
1537 1561 6.007936 TGAAATAGGAAACGAAACACCATG 57.992 37.500 0.00 0.00 0.00 3.66
1539 1563 6.095720 ACTTTGAAATAGGAAACGAAACACCA 59.904 34.615 0.00 0.00 0.00 4.17
1541 1565 7.190871 TCACTTTGAAATAGGAAACGAAACAC 58.809 34.615 0.00 0.00 0.00 3.32
1542 1566 7.323049 TCACTTTGAAATAGGAAACGAAACA 57.677 32.000 0.00 0.00 0.00 2.83
1543 1567 8.623310 TTTCACTTTGAAATAGGAAACGAAAC 57.377 30.769 0.00 0.00 41.02 2.78
1544 1568 9.810545 ATTTTCACTTTGAAATAGGAAACGAAA 57.189 25.926 2.31 0.00 44.75 3.46
1545 1569 9.458374 GATTTTCACTTTGAAATAGGAAACGAA 57.542 29.630 2.31 0.00 44.75 3.85
1546 1570 7.801315 CGATTTTCACTTTGAAATAGGAAACGA 59.199 33.333 2.31 0.00 44.75 3.85
1554 1578 4.216687 ACCCGCGATTTTCACTTTGAAATA 59.783 37.500 8.23 0.00 44.75 1.40
1567 1591 1.132262 CAATGTAAGCACCCGCGATTT 59.868 47.619 8.23 0.00 45.49 2.17
1572 1596 0.885196 TTTCCAATGTAAGCACCCGC 59.115 50.000 0.00 0.00 38.99 6.13
1573 1597 3.866883 AATTTCCAATGTAAGCACCCG 57.133 42.857 0.00 0.00 0.00 5.28
1611 1635 1.092921 TTGCAAGGTGTGTCGGTGTC 61.093 55.000 0.00 0.00 0.00 3.67
1683 1707 4.137872 TCCTCGCTAAACCGGCCG 62.138 66.667 21.04 21.04 0.00 6.13
1721 1745 3.578716 TGAGGAAAGAAGACCAAGACGAT 59.421 43.478 0.00 0.00 0.00 3.73
1730 1754 4.001618 ACTTCTGCTGAGGAAAGAAGAC 57.998 45.455 16.32 0.00 46.46 3.01
1790 1819 6.372659 TGCAGTAATAAGCAGAGGAAAGAAAG 59.627 38.462 0.00 0.00 35.51 2.62
1791 1820 6.237901 TGCAGTAATAAGCAGAGGAAAGAAA 58.762 36.000 0.00 0.00 35.51 2.52
1913 1942 4.881273 TGATGTGAACTGTAACTTGCTTGT 59.119 37.500 0.00 0.00 0.00 3.16
1993 2023 9.439500 AAAGTGATTGCAACATTTAGCATATTT 57.561 25.926 0.00 0.00 40.94 1.40
2133 2163 5.121811 CCACTCCACTCTTATGAGAATTGG 58.878 45.833 12.31 9.42 42.73 3.16
2178 2208 5.679734 AACTTACAGAAACATGACAGCAG 57.320 39.130 0.00 0.00 0.00 4.24
2179 2209 5.733091 GCAAACTTACAGAAACATGACAGCA 60.733 40.000 0.00 0.00 0.00 4.41
2180 2210 4.676924 GCAAACTTACAGAAACATGACAGC 59.323 41.667 0.00 0.00 0.00 4.40
2266 2299 3.585289 TGGGCCTTGAATGTAGTACTGAA 59.415 43.478 5.39 0.00 0.00 3.02
2393 2426 7.918562 GCTTACAAAGGTCAGAAACATAAAACA 59.081 33.333 0.00 0.00 0.00 2.83
2435 2470 0.803117 GGAAGAACCTTAAGTGGCGC 59.197 55.000 0.00 0.00 35.41 6.53
2466 2501 5.936956 TGTCAACATCATGTAGTTATGTGCA 59.063 36.000 0.00 0.00 34.20 4.57
2467 2502 6.421377 TGTCAACATCATGTAGTTATGTGC 57.579 37.500 0.00 0.00 34.20 4.57
2468 2503 9.317936 AGTATGTCAACATCATGTAGTTATGTG 57.682 33.333 0.00 0.00 37.76 3.21
2469 2504 9.317936 CAGTATGTCAACATCATGTAGTTATGT 57.682 33.333 0.00 0.00 37.76 2.29
2499 2539 3.120199 CGTGGCAACTCATCCTTTAAGTG 60.120 47.826 0.00 0.00 37.61 3.16
2676 2717 6.119144 TCAACTTCCTTCAAAAACTCGAAG 57.881 37.500 0.00 0.00 38.68 3.79
2762 2803 1.219393 GAGCCAAGTCCCTTCCTCG 59.781 63.158 0.00 0.00 0.00 4.63
2877 2918 3.559655 GTGGCAAAACAGGGTGATTTTTC 59.440 43.478 0.00 0.00 0.00 2.29
2922 2965 6.152379 GGCCAAACTAATTCTGTTCTCAAAG 58.848 40.000 0.00 0.00 0.00 2.77
2930 2973 4.592778 ACCAATTGGCCAAACTAATTCTGT 59.407 37.500 24.71 8.28 37.35 3.41
3128 3173 7.350110 ACAATCCATTAAATTTTGCAGAACG 57.650 32.000 0.00 0.00 0.00 3.95
3150 3195 7.130681 AGGGTGTTGGATAAAAATTCAAACA 57.869 32.000 0.00 0.00 35.23 2.83
3180 3225 0.178068 AGGCCATGCACTACTAACCG 59.822 55.000 5.01 0.00 0.00 4.44
3182 3227 2.691409 TCAGGCCATGCACTACTAAC 57.309 50.000 5.01 0.00 0.00 2.34
3220 3265 6.883217 AGCTTATCACAATTCACATCTTGAGT 59.117 34.615 0.00 0.00 34.94 3.41
3307 3352 7.042389 GCCGCATATATTAAATAAGAGGAGAGC 60.042 40.741 0.00 0.00 0.00 4.09
3308 3353 7.981789 TGCCGCATATATTAAATAAGAGGAGAG 59.018 37.037 0.00 0.00 0.00 3.20
3360 3409 9.246670 AGAACAATGATGAAAGAATGGTATCAA 57.753 29.630 0.00 0.00 32.21 2.57
3419 3471 6.842437 ACAGTCTAAGAGAAGACAGCAATA 57.158 37.500 6.76 0.00 46.89 1.90
3427 3479 9.661563 TGTAAAACAAAACAGTCTAAGAGAAGA 57.338 29.630 0.00 0.00 0.00 2.87
3439 3491 6.900568 TTGGCAATCTGTAAAACAAAACAG 57.099 33.333 0.00 0.00 43.63 3.16
3454 3506 3.429960 GGCCTCTTTCTCATTTGGCAATC 60.430 47.826 0.00 0.00 41.86 2.67
3492 3544 2.029918 GCGTGGCCTCTTTCTCATTTTT 60.030 45.455 3.32 0.00 0.00 1.94
3493 3545 1.541588 GCGTGGCCTCTTTCTCATTTT 59.458 47.619 3.32 0.00 0.00 1.82
3494 3546 1.168714 GCGTGGCCTCTTTCTCATTT 58.831 50.000 3.32 0.00 0.00 2.32
3495 3547 0.678048 GGCGTGGCCTCTTTCTCATT 60.678 55.000 3.32 0.00 46.69 2.57
3496 3548 1.078143 GGCGTGGCCTCTTTCTCAT 60.078 57.895 3.32 0.00 46.69 2.90
3497 3549 2.347490 GGCGTGGCCTCTTTCTCA 59.653 61.111 3.32 0.00 46.69 3.27
3507 3559 3.753272 ACATCAGATTAATATGGCGTGGC 59.247 43.478 10.08 0.00 0.00 5.01
3508 3560 6.091305 CAGTACATCAGATTAATATGGCGTGG 59.909 42.308 10.08 0.00 0.00 4.94
3509 3561 6.646653 ACAGTACATCAGATTAATATGGCGTG 59.353 38.462 10.08 9.13 0.00 5.34
3510 3562 6.759272 ACAGTACATCAGATTAATATGGCGT 58.241 36.000 10.08 9.63 0.00 5.68
3592 3644 1.209504 TCGATTGGATGACCTTCACCC 59.790 52.381 0.00 0.00 37.04 4.61
3839 3892 3.762779 GCTGCAAACAAAGATAAGCGAT 58.237 40.909 0.00 0.00 0.00 4.58
3862 3915 3.502595 TGGTATAGTCGACTGCTGCTATC 59.497 47.826 28.12 11.62 0.00 2.08
3968 4021 3.063510 TCTTGCAATCTGGAGAGTTGG 57.936 47.619 0.00 0.00 0.00 3.77
4002 4055 3.002791 TCACATCAAAGCGGATTCACTC 58.997 45.455 0.00 0.00 0.00 3.51
4009 4062 4.582701 AAAAATGTCACATCAAAGCGGA 57.417 36.364 0.00 0.00 0.00 5.54
4278 4331 1.800315 CGGTACACTGACCTTCGCG 60.800 63.158 0.00 0.00 37.34 5.87
4296 4349 3.644884 TCTTCTTCGTCAGTCTGTTCC 57.355 47.619 0.00 0.00 0.00 3.62
4304 4357 3.917380 GTCACACTCATCTTCTTCGTCAG 59.083 47.826 0.00 0.00 0.00 3.51
4420 4473 9.933723 GGCAAATCAAAATAGCCAATTATCTAT 57.066 29.630 0.00 0.00 44.59 1.98
4486 4539 6.422701 CACGTTACAGGAAAACATAGACAGAA 59.577 38.462 0.00 0.00 0.00 3.02
4492 4545 6.721571 ACATCACGTTACAGGAAAACATAG 57.278 37.500 0.00 0.00 0.00 2.23
4582 4635 4.766891 ACCTCTGCAGCAGCTAAAAATAAA 59.233 37.500 18.43 0.00 42.74 1.40
4583 4636 4.335416 ACCTCTGCAGCAGCTAAAAATAA 58.665 39.130 18.43 0.00 42.74 1.40
4584 4637 3.955471 ACCTCTGCAGCAGCTAAAAATA 58.045 40.909 18.43 0.00 42.74 1.40
4585 4638 2.800250 ACCTCTGCAGCAGCTAAAAAT 58.200 42.857 18.43 0.00 42.74 1.82
4591 4644 0.397941 TGTAAACCTCTGCAGCAGCT 59.602 50.000 18.43 0.00 42.74 4.24
4596 4649 5.633830 ATGTTTGATGTAAACCTCTGCAG 57.366 39.130 7.63 7.63 46.44 4.41
4598 4651 5.634859 CCAAATGTTTGATGTAAACCTCTGC 59.365 40.000 7.04 0.00 46.44 4.26
4617 4670 1.533711 CCTCCCAGATCGCCCAAAT 59.466 57.895 0.00 0.00 0.00 2.32
4622 4675 4.247380 CAGCCCTCCCAGATCGCC 62.247 72.222 0.00 0.00 0.00 5.54
4894 5110 9.169468 GACATATTTTAGTGTGTTTGTTCACTG 57.831 33.333 7.88 0.00 43.46 3.66
5229 5450 5.648178 TCACACACCTCGCTTTAACTATA 57.352 39.130 0.00 0.00 0.00 1.31
5278 5499 6.183360 GCTTATACTCTACCTATGTGGATCGG 60.183 46.154 0.00 0.00 39.71 4.18
5326 5547 1.028905 TAGGGTTTGTGCTGTTGTGC 58.971 50.000 0.00 0.00 0.00 4.57
5327 5548 2.297701 AGTAGGGTTTGTGCTGTTGTG 58.702 47.619 0.00 0.00 0.00 3.33
5328 5549 2.687935 CAAGTAGGGTTTGTGCTGTTGT 59.312 45.455 0.00 0.00 0.00 3.32
5329 5550 2.948979 TCAAGTAGGGTTTGTGCTGTTG 59.051 45.455 0.00 0.00 0.00 3.33
5330 5551 2.949644 GTCAAGTAGGGTTTGTGCTGTT 59.050 45.455 0.00 0.00 0.00 3.16
5331 5552 2.172717 AGTCAAGTAGGGTTTGTGCTGT 59.827 45.455 0.00 0.00 0.00 4.40
5332 5553 2.851195 AGTCAAGTAGGGTTTGTGCTG 58.149 47.619 0.00 0.00 0.00 4.41
5333 5554 3.646637 ACTAGTCAAGTAGGGTTTGTGCT 59.353 43.478 0.00 0.00 36.36 4.40
5336 5557 5.280011 CCATGACTAGTCAAGTAGGGTTTGT 60.280 44.000 28.43 5.55 43.58 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.