Multiple sequence alignment - TraesCS1A01G269100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G269100 chr1A 100.000 8350 0 0 1 8350 463819810 463828159 0.000000e+00 15420.0
1 TraesCS1A01G269100 chr1D 95.583 2128 53 18 6235 8350 364769046 364771144 0.000000e+00 3371.0
2 TraesCS1A01G269100 chr1D 92.403 2106 80 34 2070 4107 364764136 364766229 0.000000e+00 2929.0
3 TraesCS1A01G269100 chr1D 92.548 2013 90 23 4264 6240 364766223 364768211 0.000000e+00 2832.0
4 TraesCS1A01G269100 chr1D 90.336 1397 69 26 273 1668 364762306 364763637 0.000000e+00 1772.0
5 TraesCS1A01G269100 chr1D 92.162 421 24 2 1654 2074 364763688 364764099 3.360000e-163 586.0
6 TraesCS1A01G269100 chr1D 86.207 87 10 2 205 289 364762204 364762290 8.920000e-15 93.5
7 TraesCS1A01G269100 chr1B 94.170 2127 63 14 6235 8350 488214194 488216270 0.000000e+00 3184.0
8 TraesCS1A01G269100 chr1B 94.795 1902 72 10 1666 3564 488209045 488210922 0.000000e+00 2939.0
9 TraesCS1A01G269100 chr1B 91.650 2012 90 36 4264 6240 488211504 488213472 0.000000e+00 2713.0
10 TraesCS1A01G269100 chr1B 90.375 1413 79 22 274 1668 488207610 488208983 0.000000e+00 1803.0
11 TraesCS1A01G269100 chr1B 93.761 545 21 7 3576 4107 488210966 488211510 0.000000e+00 806.0
12 TraesCS1A01G269100 chr1B 92.623 122 7 2 5521 5642 325270484 325270365 3.100000e-39 174.0
13 TraesCS1A01G269100 chr3B 76.687 652 124 18 6668 7312 652909749 652909119 3.730000e-88 337.0
14 TraesCS1A01G269100 chr3B 79.564 367 73 2 2238 2603 652914173 652913808 2.310000e-65 261.0
15 TraesCS1A01G269100 chr3B 93.506 154 5 5 4117 4268 445594742 445594892 3.030000e-54 224.0
16 TraesCS1A01G269100 chr3B 93.878 147 5 4 4117 4262 804133296 804133153 1.410000e-52 219.0
17 TraesCS1A01G269100 chr3B 90.698 129 8 4 5514 5641 189413900 189414025 1.440000e-37 169.0
18 TraesCS1A01G269100 chr3B 91.270 126 7 4 5520 5645 325871113 325870992 1.440000e-37 169.0
19 TraesCS1A01G269100 chr3B 84.800 125 19 0 2947 3071 652913667 652913543 8.800000e-25 126.0
20 TraesCS1A01G269100 chr3A 76.489 655 122 21 6668 7312 633848536 633847904 2.250000e-85 327.0
21 TraesCS1A01G269100 chr3A 79.564 367 73 2 2238 2603 633856444 633856079 2.310000e-65 261.0
22 TraesCS1A01G269100 chr3A 94.286 175 1 3 4103 4268 119691774 119691948 8.310000e-65 259.0
23 TraesCS1A01G269100 chr3A 94.545 165 0 6 4106 4262 174284563 174284726 6.470000e-61 246.0
24 TraesCS1A01G269100 chr3A 92.308 156 2 3 4117 4263 306876135 306876289 6.570000e-51 213.0
25 TraesCS1A01G269100 chr3A 91.270 126 7 4 5520 5645 291825451 291825330 1.440000e-37 169.0
26 TraesCS1A01G269100 chr3A 84.000 125 20 0 2947 3071 633855969 633855845 4.090000e-23 121.0
27 TraesCS1A01G269100 chr3D 76.582 632 120 20 6687 7312 491958820 491958211 1.050000e-83 322.0
28 TraesCS1A01G269100 chr3D 79.564 367 73 2 2238 2603 491963529 491963164 2.310000e-65 261.0
29 TraesCS1A01G269100 chr3D 92.623 122 5 4 5522 5643 537915012 537914895 1.110000e-38 172.0
30 TraesCS1A01G269100 chr3D 84.252 127 19 1 2945 3071 491963055 491962930 1.140000e-23 122.0
31 TraesCS1A01G269100 chr7A 95.092 163 0 1 4108 4262 641434428 641434266 5.000000e-62 250.0
32 TraesCS1A01G269100 chr7A 94.578 166 1 1 4106 4263 685912170 685912335 5.000000e-62 250.0
33 TraesCS1A01G269100 chr7A 89.385 179 4 6 4101 4271 106201017 106200846 2.360000e-50 211.0
34 TraesCS1A01G269100 chr7A 93.333 120 5 3 5522 5641 12721013 12720897 3.100000e-39 174.0
35 TraesCS1A01G269100 chr5A 93.902 164 1 2 4108 4262 91122747 91122584 1.080000e-58 239.0
36 TraesCS1A01G269100 chr5A 92.258 155 2 3 4117 4262 602332166 602332319 2.360000e-50 211.0
37 TraesCS1A01G269100 chr5A 88.827 179 1 2 4103 4262 177619240 177619418 1.420000e-47 202.0
38 TraesCS1A01G269100 chr5A 92.683 123 6 3 5519 5641 227926409 227926528 3.100000e-39 174.0
39 TraesCS1A01G269100 chr2B 92.053 151 6 6 4117 4265 689546274 689546420 3.050000e-49 207.0
40 TraesCS1A01G269100 chr5B 88.172 186 2 3 4104 4270 418812146 418812330 3.950000e-48 204.0
41 TraesCS1A01G269100 chr5B 87.293 181 0 7 4106 4263 294561025 294560845 1.430000e-42 185.0
42 TraesCS1A01G269100 chr4A 89.205 176 0 2 4106 4262 274941851 274941676 1.420000e-47 202.0
43 TraesCS1A01G269100 chr7B 93.388 121 6 2 5522 5642 511462211 511462093 2.390000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G269100 chr1A 463819810 463828159 8349 False 15420.000000 15420 100.000000 1 8350 1 chr1A.!!$F1 8349
1 TraesCS1A01G269100 chr1D 364762204 364771144 8940 False 1930.583333 3371 91.539833 205 8350 6 chr1D.!!$F1 8145
2 TraesCS1A01G269100 chr1B 488207610 488216270 8660 False 2289.000000 3184 92.950200 274 8350 5 chr1B.!!$F1 8076
3 TraesCS1A01G269100 chr3B 652909119 652914173 5054 True 241.333333 337 80.350333 2238 7312 3 chr3B.!!$R3 5074
4 TraesCS1A01G269100 chr3A 633847904 633848536 632 True 327.000000 327 76.489000 6668 7312 1 chr3A.!!$R2 644
5 TraesCS1A01G269100 chr3D 491958211 491958820 609 True 322.000000 322 76.582000 6687 7312 1 chr3D.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.025898 TACGAGCGAAGACGTGATCG 59.974 55.000 13.59 13.59 41.16 3.69 F
973 1022 0.111253 GGCATAAGGTGGGGATCAGG 59.889 60.000 0.00 0.00 0.00 3.86 F
1097 1146 0.392998 GATCATGAGCCGGTGGTGTT 60.393 55.000 1.90 0.00 0.00 3.32 F
1103 1152 1.077357 AGCCGGTGGTGTTGTTGAA 60.077 52.632 1.90 0.00 0.00 2.69 F
1104 1153 1.101049 AGCCGGTGGTGTTGTTGAAG 61.101 55.000 1.90 0.00 0.00 3.02 F
1219 1280 1.732941 CCTTGCTGCGTACAATGGTA 58.267 50.000 0.00 0.00 0.00 3.25 F
2367 2537 2.292828 ATGCTACCAGTGGCTTTGTT 57.707 45.000 9.78 0.00 37.97 2.83 F
4135 4804 0.174162 TAAAGCGTCCCTAAGGCGAC 59.826 55.000 0.00 0.00 43.57 5.19 F
4187 4856 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12 F
6206 7518 0.385390 CACCCTTTGTTGTGGCTCAC 59.615 55.000 0.00 0.00 34.56 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1919 2048 0.179119 GCAAAGTCATGCATCTGGCC 60.179 55.000 0.00 0.0 45.70 5.36 R
2367 2537 2.174639 TCCCTTTGCTCCAGAACTTGAA 59.825 45.455 0.00 0.0 0.00 2.69 R
3077 3249 3.733443 AATCACCTTTGCCAAAGACAC 57.267 42.857 18.59 0.0 41.02 3.67 R
3145 3321 2.172505 TGCTGGGAAGTTCTTTCTGACA 59.827 45.455 2.25 0.0 36.03 3.58 R
3361 3538 6.587990 CCCAGATATTGCTACGTTCTATTCAG 59.412 42.308 0.00 0.0 0.00 3.02 R
3408 3585 2.698803 TGATCATGGACCACTCAAACG 58.301 47.619 0.00 0.0 0.00 3.60 R
4168 4837 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.0 30.80 3.13 R
6328 8517 0.391661 GCCGGAGAGCAGATTTGACA 60.392 55.000 5.05 0.0 0.00 3.58 R
6749 8954 9.997482 TTCGTTAGTTATCTTCCAAATTATTGC 57.003 29.630 0.00 0.0 35.10 3.56 R
7741 9948 1.079474 TGCTCGCTCGCATTTACCA 60.079 52.632 0.00 0.0 34.44 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.807649 TTAGTCGTTTAAATACTTAGGACATCC 57.192 33.333 10.38 0.00 0.00 3.51
28 29 9.193806 AGTCGTTTAAATACTTAGGACATCCTA 57.806 33.333 3.36 3.36 46.48 2.94
42 43 7.741554 AGGACATCCTAGTTTCTAACATTCT 57.258 36.000 0.00 0.00 46.48 2.40
43 44 8.840200 AGGACATCCTAGTTTCTAACATTCTA 57.160 34.615 0.00 0.00 46.48 2.10
44 45 9.440761 AGGACATCCTAGTTTCTAACATTCTAT 57.559 33.333 0.00 0.00 46.48 1.98
119 120 4.893424 AAAATACATGTATGTCGCCCAC 57.107 40.909 18.94 0.00 41.97 4.61
120 121 3.552132 AATACATGTATGTCGCCCACA 57.448 42.857 18.94 0.00 41.97 4.17
122 123 4.882842 ATACATGTATGTCGCCCACATA 57.117 40.909 17.60 0.00 44.56 2.29
130 131 2.296792 TGTCGCCCACATAATGAATGG 58.703 47.619 0.00 0.00 40.16 3.16
131 132 1.001378 GTCGCCCACATAATGAATGGC 60.001 52.381 0.00 0.00 40.16 4.40
132 133 1.031235 CGCCCACATAATGAATGGCA 58.969 50.000 0.00 0.00 40.16 4.92
133 134 1.408340 CGCCCACATAATGAATGGCAA 59.592 47.619 0.00 0.00 40.16 4.52
134 135 2.799207 CGCCCACATAATGAATGGCAAC 60.799 50.000 0.00 0.00 40.16 4.17
135 136 2.483538 GCCCACATAATGAATGGCAACC 60.484 50.000 0.00 0.00 40.16 3.77
136 137 2.765135 CCCACATAATGAATGGCAACCA 59.235 45.455 0.00 0.00 40.16 3.67
138 139 4.373527 CCACATAATGAATGGCAACCATG 58.626 43.478 0.00 0.00 44.40 3.66
139 140 4.099727 CCACATAATGAATGGCAACCATGA 59.900 41.667 0.00 0.00 44.40 3.07
140 141 5.221561 CCACATAATGAATGGCAACCATGAT 60.222 40.000 0.00 2.03 44.40 2.45
141 142 6.015265 CCACATAATGAATGGCAACCATGATA 60.015 38.462 0.00 0.00 44.40 2.15
142 143 7.088272 CACATAATGAATGGCAACCATGATAG 58.912 38.462 0.00 3.25 44.40 2.08
143 144 6.779049 ACATAATGAATGGCAACCATGATAGT 59.221 34.615 0.00 3.71 44.40 2.12
144 145 7.288389 ACATAATGAATGGCAACCATGATAGTT 59.712 33.333 0.00 0.00 44.40 2.24
145 146 6.549433 AATGAATGGCAACCATGATAGTTT 57.451 33.333 0.00 0.00 44.40 2.66
146 147 5.999205 TGAATGGCAACCATGATAGTTTT 57.001 34.783 0.00 0.00 44.40 2.43
147 148 5.964758 TGAATGGCAACCATGATAGTTTTC 58.035 37.500 0.00 0.00 44.40 2.29
148 149 5.105392 TGAATGGCAACCATGATAGTTTTCC 60.105 40.000 0.00 0.00 44.40 3.13
149 150 3.772387 TGGCAACCATGATAGTTTTCCA 58.228 40.909 0.00 0.00 0.00 3.53
150 151 4.155709 TGGCAACCATGATAGTTTTCCAA 58.844 39.130 0.00 0.00 29.36 3.53
151 152 4.220382 TGGCAACCATGATAGTTTTCCAAG 59.780 41.667 0.00 0.00 29.36 3.61
152 153 4.462483 GGCAACCATGATAGTTTTCCAAGA 59.538 41.667 0.00 0.00 0.00 3.02
153 154 5.047377 GGCAACCATGATAGTTTTCCAAGAA 60.047 40.000 0.00 0.00 0.00 2.52
154 155 6.454795 GCAACCATGATAGTTTTCCAAGAAA 58.545 36.000 0.00 0.00 0.00 2.52
155 156 7.099120 GCAACCATGATAGTTTTCCAAGAAAT 58.901 34.615 0.00 0.00 0.00 2.17
156 157 8.250332 GCAACCATGATAGTTTTCCAAGAAATA 58.750 33.333 0.00 0.00 0.00 1.40
160 161 9.669353 CCATGATAGTTTTCCAAGAAATAATCG 57.331 33.333 0.00 0.00 0.00 3.34
163 164 9.667107 TGATAGTTTTCCAAGAAATAATCGAGT 57.333 29.630 0.00 0.00 0.00 4.18
164 165 9.922305 GATAGTTTTCCAAGAAATAATCGAGTG 57.078 33.333 0.00 0.00 0.00 3.51
165 166 7.979444 AGTTTTCCAAGAAATAATCGAGTGA 57.021 32.000 0.00 0.00 0.00 3.41
166 167 8.391075 AGTTTTCCAAGAAATAATCGAGTGAA 57.609 30.769 0.00 0.00 0.00 3.18
167 168 8.507249 AGTTTTCCAAGAAATAATCGAGTGAAG 58.493 33.333 0.00 0.00 0.00 3.02
168 169 8.504005 GTTTTCCAAGAAATAATCGAGTGAAGA 58.496 33.333 0.00 0.00 0.00 2.87
169 170 8.792830 TTTCCAAGAAATAATCGAGTGAAGAT 57.207 30.769 0.00 0.00 0.00 2.40
170 171 7.776933 TCCAAGAAATAATCGAGTGAAGATG 57.223 36.000 0.00 0.00 0.00 2.90
171 172 6.763135 TCCAAGAAATAATCGAGTGAAGATGG 59.237 38.462 0.00 0.00 0.00 3.51
172 173 6.017605 CCAAGAAATAATCGAGTGAAGATGGG 60.018 42.308 0.00 0.00 0.00 4.00
173 174 5.615289 AGAAATAATCGAGTGAAGATGGGG 58.385 41.667 0.00 0.00 0.00 4.96
174 175 4.357918 AATAATCGAGTGAAGATGGGGG 57.642 45.455 0.00 0.00 0.00 5.40
175 176 0.181350 AATCGAGTGAAGATGGGGGC 59.819 55.000 0.00 0.00 0.00 5.80
176 177 1.700042 ATCGAGTGAAGATGGGGGCC 61.700 60.000 0.00 0.00 0.00 5.80
177 178 2.669133 CGAGTGAAGATGGGGGCCA 61.669 63.158 4.39 0.00 38.19 5.36
178 179 1.077429 GAGTGAAGATGGGGGCCAC 60.077 63.158 4.39 0.17 35.80 5.01
179 180 2.043953 GTGAAGATGGGGGCCACC 60.044 66.667 20.63 20.63 35.80 4.61
180 181 2.534011 TGAAGATGGGGGCCACCA 60.534 61.111 33.68 33.68 46.24 4.17
181 182 2.276740 GAAGATGGGGGCCACCAG 59.723 66.667 34.40 0.00 45.20 4.00
182 183 2.535317 AAGATGGGGGCCACCAGT 60.535 61.111 34.40 20.15 45.20 4.00
183 184 1.230149 AAGATGGGGGCCACCAGTA 60.230 57.895 34.40 9.50 45.20 2.74
184 185 0.849094 AAGATGGGGGCCACCAGTAA 60.849 55.000 34.40 9.02 45.20 2.24
185 186 0.849094 AGATGGGGGCCACCAGTAAA 60.849 55.000 34.40 8.54 45.20 2.01
186 187 0.261696 GATGGGGGCCACCAGTAAAT 59.738 55.000 34.40 16.24 45.20 1.40
187 188 0.261696 ATGGGGGCCACCAGTAAATC 59.738 55.000 34.40 0.00 45.20 2.17
188 189 1.143329 TGGGGGCCACCAGTAAATCA 61.143 55.000 27.42 0.00 42.91 2.57
189 190 0.395724 GGGGGCCACCAGTAAATCAG 60.396 60.000 22.91 0.00 42.91 2.90
190 191 0.623723 GGGGCCACCAGTAAATCAGA 59.376 55.000 4.39 0.00 39.85 3.27
191 192 1.682087 GGGGCCACCAGTAAATCAGAC 60.682 57.143 4.39 0.00 39.85 3.51
192 193 1.004277 GGGCCACCAGTAAATCAGACA 59.996 52.381 4.39 0.00 36.50 3.41
193 194 2.357154 GGGCCACCAGTAAATCAGACAT 60.357 50.000 4.39 0.00 36.50 3.06
194 195 3.356290 GGCCACCAGTAAATCAGACATT 58.644 45.455 0.00 0.00 0.00 2.71
195 196 3.763897 GGCCACCAGTAAATCAGACATTT 59.236 43.478 0.00 0.00 0.00 2.32
196 197 4.220602 GGCCACCAGTAAATCAGACATTTT 59.779 41.667 0.00 0.00 0.00 1.82
197 198 5.417580 GGCCACCAGTAAATCAGACATTTTA 59.582 40.000 0.00 0.00 0.00 1.52
198 199 6.322491 GCCACCAGTAAATCAGACATTTTAC 58.678 40.000 0.00 0.00 38.16 2.01
199 200 6.542852 CCACCAGTAAATCAGACATTTTACG 58.457 40.000 0.00 0.00 41.17 3.18
200 201 6.370442 CCACCAGTAAATCAGACATTTTACGA 59.630 38.462 0.00 0.00 41.17 3.43
201 202 7.413000 CCACCAGTAAATCAGACATTTTACGAG 60.413 40.741 0.00 0.00 41.17 4.18
202 203 6.092259 ACCAGTAAATCAGACATTTTACGAGC 59.908 38.462 0.00 0.00 41.17 5.03
203 204 6.178507 CAGTAAATCAGACATTTTACGAGCG 58.821 40.000 0.00 0.00 41.17 5.03
204 205 6.034577 CAGTAAATCAGACATTTTACGAGCGA 59.965 38.462 0.00 0.00 41.17 4.93
205 206 5.856126 AAATCAGACATTTTACGAGCGAA 57.144 34.783 0.00 0.00 0.00 4.70
206 207 5.456192 AATCAGACATTTTACGAGCGAAG 57.544 39.130 0.00 0.00 0.00 3.79
207 208 4.168922 TCAGACATTTTACGAGCGAAGA 57.831 40.909 0.00 0.00 0.00 2.87
208 209 3.918591 TCAGACATTTTACGAGCGAAGAC 59.081 43.478 0.00 0.00 0.00 3.01
209 210 2.915463 AGACATTTTACGAGCGAAGACG 59.085 45.455 0.00 0.00 42.93 4.18
210 211 2.660236 GACATTTTACGAGCGAAGACGT 59.340 45.455 0.00 0.00 43.02 4.34
211 212 2.407361 ACATTTTACGAGCGAAGACGTG 59.593 45.455 0.00 0.00 41.16 4.49
212 213 2.404265 TTTTACGAGCGAAGACGTGA 57.596 45.000 0.00 0.00 41.16 4.35
213 214 2.624316 TTTACGAGCGAAGACGTGAT 57.376 45.000 0.00 0.00 41.16 3.06
214 215 2.169663 TTACGAGCGAAGACGTGATC 57.830 50.000 0.00 0.00 41.16 2.92
215 216 0.025898 TACGAGCGAAGACGTGATCG 59.974 55.000 13.59 13.59 41.16 3.69
216 217 1.934956 CGAGCGAAGACGTGATCGG 60.935 63.158 17.99 2.03 41.85 4.18
231 232 1.692148 ATCGGCACATGTAACGCACG 61.692 55.000 14.43 11.81 0.00 5.34
232 233 2.202298 GGCACATGTAACGCACGC 60.202 61.111 0.00 0.00 0.00 5.34
234 235 1.082431 GCACATGTAACGCACGCAA 60.082 52.632 0.00 0.00 0.00 4.85
236 237 1.962412 CACATGTAACGCACGCAAAT 58.038 45.000 0.00 0.00 0.00 2.32
242 243 2.094575 TGTAACGCACGCAAATCATACC 59.905 45.455 0.00 0.00 0.00 2.73
244 245 1.378531 ACGCACGCAAATCATACCAT 58.621 45.000 0.00 0.00 0.00 3.55
257 258 9.241317 GCAAATCATACCATACATTTTTCTGAG 57.759 33.333 0.00 0.00 0.00 3.35
300 335 3.919804 CACACAAAATTTAGACCATGCCG 59.080 43.478 0.00 0.00 0.00 5.69
339 374 3.503851 GCCGAAGCAACAAAACAATTC 57.496 42.857 0.00 0.00 39.53 2.17
436 471 2.131067 CCGAAGCTCCTCTCCCCTC 61.131 68.421 0.00 0.00 0.00 4.30
437 472 2.131067 CGAAGCTCCTCTCCCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
438 473 1.764454 GAAGCTCCTCTCCCCTCCC 60.764 68.421 0.00 0.00 0.00 4.30
442 480 2.204624 TCCTCTCCCCTCCCCTGA 60.205 66.667 0.00 0.00 0.00 3.86
494 532 1.969589 GTCGAACCCCAACGCCAAT 60.970 57.895 0.00 0.00 0.00 3.16
506 544 1.330655 ACGCCAATCCACGATCTCCT 61.331 55.000 0.00 0.00 0.00 3.69
507 545 0.598680 CGCCAATCCACGATCTCCTC 60.599 60.000 0.00 0.00 0.00 3.71
555 593 1.153349 GGCCGATCCTCACAAGGTC 60.153 63.158 0.00 0.00 43.82 3.85
686 732 3.783165 GGCAGGCAGGCTCTTTTT 58.217 55.556 0.00 0.00 40.24 1.94
705 751 1.993956 TTTTTGAAGCTAGGCAGGCA 58.006 45.000 0.00 0.00 0.00 4.75
706 752 1.538047 TTTTGAAGCTAGGCAGGCAG 58.462 50.000 0.00 0.00 0.00 4.85
707 753 0.322816 TTTGAAGCTAGGCAGGCAGG 60.323 55.000 0.00 0.00 0.00 4.85
708 754 2.515757 GAAGCTAGGCAGGCAGGC 60.516 66.667 0.00 0.00 44.61 4.85
727 773 1.308998 CCCTCGTTACATGGATTGGC 58.691 55.000 0.00 0.00 0.00 4.52
816 862 0.472471 TTGGTCAGGTCTTGGTGGAC 59.528 55.000 0.00 0.00 35.66 4.02
834 880 0.191064 ACTGAGTGGTTCCTGGAGGA 59.809 55.000 0.00 0.00 43.73 3.71
835 881 0.901124 CTGAGTGGTTCCTGGAGGAG 59.099 60.000 0.00 0.00 46.36 3.69
836 882 0.545309 TGAGTGGTTCCTGGAGGAGG 60.545 60.000 0.00 0.00 46.36 4.30
905 954 1.813178 GCTTTAGCTTTGTGGAGGGTC 59.187 52.381 0.00 0.00 38.21 4.46
908 957 0.320374 TAGCTTTGTGGAGGGTCACG 59.680 55.000 0.00 0.00 40.31 4.35
925 974 4.919754 GGTCACGGAATAATACGGTATCAC 59.080 45.833 0.30 0.00 0.00 3.06
950 999 0.842030 ATGGGAGGTGAGCAGTTGGA 60.842 55.000 0.00 0.00 0.00 3.53
955 1004 2.420687 GGAGGTGAGCAGTTGGATTAGG 60.421 54.545 0.00 0.00 0.00 2.69
972 1021 1.143813 AGGCATAAGGTGGGGATCAG 58.856 55.000 0.00 0.00 0.00 2.90
973 1022 0.111253 GGCATAAGGTGGGGATCAGG 59.889 60.000 0.00 0.00 0.00 3.86
974 1023 0.111253 GCATAAGGTGGGGATCAGGG 59.889 60.000 0.00 0.00 0.00 4.45
1026 1075 0.739112 GCCTCTGCTCAAAGGTCTCG 60.739 60.000 0.00 0.00 34.96 4.04
1074 1123 2.046892 CTCGGCAGGAACCAGGTG 60.047 66.667 0.00 0.00 0.00 4.00
1096 1145 1.221840 GATCATGAGCCGGTGGTGT 59.778 57.895 1.90 0.00 0.00 4.16
1097 1146 0.392998 GATCATGAGCCGGTGGTGTT 60.393 55.000 1.90 0.00 0.00 3.32
1103 1152 1.077357 AGCCGGTGGTGTTGTTGAA 60.077 52.632 1.90 0.00 0.00 2.69
1104 1153 1.101049 AGCCGGTGGTGTTGTTGAAG 61.101 55.000 1.90 0.00 0.00 3.02
1105 1154 2.029743 CCGGTGGTGTTGTTGAAGG 58.970 57.895 0.00 0.00 0.00 3.46
1219 1280 1.732941 CCTTGCTGCGTACAATGGTA 58.267 50.000 0.00 0.00 0.00 3.25
1342 1403 6.688813 GCCATTTCTTTCAATCTATGACGAAC 59.311 38.462 0.00 0.00 37.92 3.95
1423 1484 7.827729 GGTCCTTAGTTTGTTAGATTGTACCAT 59.172 37.037 0.00 0.00 0.00 3.55
1424 1485 8.665685 GTCCTTAGTTTGTTAGATTGTACCATG 58.334 37.037 0.00 0.00 0.00 3.66
1583 1646 7.119262 ACGAAATAAAGTGTCCATTACTCCAAG 59.881 37.037 0.00 0.00 0.00 3.61
1803 1932 5.856126 AAGTCTTGATTAACAATCGCGAA 57.144 34.783 15.24 0.00 40.84 4.70
1804 1933 5.204673 AGTCTTGATTAACAATCGCGAAC 57.795 39.130 15.24 1.01 40.84 3.95
1820 1949 5.275494 TCGCGAACGATTTTCAGTGATATA 58.725 37.500 6.20 0.00 45.12 0.86
1825 1954 8.366666 GCGAACGATTTTCAGTGATATATAGTC 58.633 37.037 0.00 0.00 0.00 2.59
1895 2024 3.855689 AATGCCGAGGAAAAACTCATG 57.144 42.857 0.00 0.00 37.34 3.07
1903 2032 5.391310 CCGAGGAAAAACTCATGTCATCTTG 60.391 44.000 0.00 0.00 37.34 3.02
1919 2048 6.199908 TGTCATCTTGCAAAATAAACCAAACG 59.800 34.615 0.00 0.00 0.00 3.60
2119 2289 6.875076 TGTGAGCTTTTCCTACTATAAGGAC 58.125 40.000 0.00 0.00 45.49 3.85
2178 2348 3.804873 GTCTTTGCTCTTTTCGAGTGTCT 59.195 43.478 0.00 0.00 41.98 3.41
2219 2389 5.982890 AACATTGTTAGGCTGCTTAATGT 57.017 34.783 7.50 6.54 39.59 2.71
2354 2524 3.363178 GCATGGCGAGTTTAAATGCTAC 58.637 45.455 0.00 0.00 40.34 3.58
2367 2537 2.292828 ATGCTACCAGTGGCTTTGTT 57.707 45.000 9.78 0.00 37.97 2.83
2746 2916 3.268023 AGGAGTTAAGTGGTAGCATGC 57.732 47.619 10.51 10.51 0.00 4.06
2858 3030 8.336801 ACAGATATAACAAAACAAAGGGAGTC 57.663 34.615 0.00 0.00 0.00 3.36
2982 3154 7.037586 TCCAACAGGGAAGAGTTAGATGTATTT 60.038 37.037 0.00 0.00 44.80 1.40
3077 3249 6.701432 AAAGTACAGTTCGTTTTCTATCCG 57.299 37.500 0.00 0.00 0.00 4.18
3145 3321 3.157087 CTGTTGCCATTCTTAGGTTGGT 58.843 45.455 3.95 0.00 32.90 3.67
3361 3538 4.063689 AGCACTGAATGATAGCTACATGC 58.936 43.478 0.00 1.54 43.29 4.06
3408 3585 5.402398 GGCCATTTCAGTTGTCAATACTTC 58.598 41.667 0.00 0.00 0.00 3.01
3438 3617 5.539574 AGTGGTCCATGATCAAATTTGTTCA 59.460 36.000 26.21 26.21 40.12 3.18
3439 3618 6.211986 AGTGGTCCATGATCAAATTTGTTCAT 59.788 34.615 27.70 27.70 44.27 2.57
3526 3742 8.698210 TGTAGTGTACTCCTTCTAGTTTGAAAA 58.302 33.333 0.00 0.00 0.00 2.29
3533 3749 7.280356 ACTCCTTCTAGTTTGAAAAGTAAGCA 58.720 34.615 0.00 0.00 0.00 3.91
3920 4223 8.630037 AGGTTATTTTTGTTTCTGAACTGTAGG 58.370 33.333 0.00 0.00 36.70 3.18
3925 4228 1.807142 GTTTCTGAACTGTAGGCCTGC 59.193 52.381 17.99 16.33 32.91 4.85
3974 4631 4.414337 TTGCATGTTTTTAGCTGGGTTT 57.586 36.364 0.00 0.00 0.00 3.27
3990 4647 3.714798 TGGGTTTGTCCTGTTCTCTAACT 59.285 43.478 0.00 0.00 36.51 2.24
4099 4768 9.979270 CTTATGTTGCCATTTATCGATATTCTC 57.021 33.333 5.84 0.00 32.29 2.87
4100 4769 9.725019 TTATGTTGCCATTTATCGATATTCTCT 57.275 29.630 5.84 0.00 32.29 3.10
4102 4771 9.725019 ATGTTGCCATTTATCGATATTCTCTAA 57.275 29.630 5.84 0.00 0.00 2.10
4103 4772 9.554395 TGTTGCCATTTATCGATATTCTCTAAA 57.446 29.630 5.84 0.00 0.00 1.85
4107 4776 9.827411 GCCATTTATCGATATTCTCTAAAAACC 57.173 33.333 5.84 0.00 0.00 3.27
4126 4795 5.381174 AACCTATGTTTTTAAAGCGTCCC 57.619 39.130 0.00 0.00 0.00 4.46
4127 4796 4.659115 ACCTATGTTTTTAAAGCGTCCCT 58.341 39.130 0.00 0.00 0.00 4.20
4128 4797 5.807909 ACCTATGTTTTTAAAGCGTCCCTA 58.192 37.500 0.00 0.00 0.00 3.53
4129 4798 6.240145 ACCTATGTTTTTAAAGCGTCCCTAA 58.760 36.000 0.00 0.00 0.00 2.69
4130 4799 6.373495 ACCTATGTTTTTAAAGCGTCCCTAAG 59.627 38.462 0.00 0.00 0.00 2.18
4131 4800 5.638596 ATGTTTTTAAAGCGTCCCTAAGG 57.361 39.130 0.00 0.00 0.00 2.69
4132 4801 3.253921 TGTTTTTAAAGCGTCCCTAAGGC 59.746 43.478 0.00 0.00 39.09 4.35
4133 4802 1.729284 TTTAAAGCGTCCCTAAGGCG 58.271 50.000 0.00 0.00 43.57 5.52
4134 4803 0.896923 TTAAAGCGTCCCTAAGGCGA 59.103 50.000 0.00 0.00 43.57 5.54
4135 4804 0.174162 TAAAGCGTCCCTAAGGCGAC 59.826 55.000 0.00 0.00 43.57 5.19
4161 4830 4.516195 GTCGAAGCGCTCCCCCTC 62.516 72.222 12.06 2.47 0.00 4.30
4169 4838 4.803908 GCTCCCCCTCCGCTTTGG 62.804 72.222 0.00 0.00 40.09 3.28
4179 4848 1.161843 TCCGCTTTGGAAAATCGACC 58.838 50.000 0.00 0.00 46.38 4.79
4180 4849 0.179200 CCGCTTTGGAAAATCGACCG 60.179 55.000 0.00 0.00 42.00 4.79
4181 4850 0.793104 CGCTTTGGAAAATCGACCGC 60.793 55.000 0.00 0.00 0.00 5.68
4182 4851 0.521735 GCTTTGGAAAATCGACCGCT 59.478 50.000 0.00 0.00 0.00 5.52
4183 4852 1.068541 GCTTTGGAAAATCGACCGCTT 60.069 47.619 0.00 0.00 0.00 4.68
4184 4853 2.607038 GCTTTGGAAAATCGACCGCTTT 60.607 45.455 0.00 0.00 0.00 3.51
4185 4854 2.697431 TTGGAAAATCGACCGCTTTG 57.303 45.000 0.00 0.00 0.00 2.77
4186 4855 0.878416 TGGAAAATCGACCGCTTTGG 59.122 50.000 0.00 0.00 46.41 3.28
4187 4856 0.170339 GGAAAATCGACCGCTTTGGG 59.830 55.000 0.00 0.00 44.64 4.12
4188 4857 0.456142 GAAAATCGACCGCTTTGGGC 60.456 55.000 0.00 0.00 45.45 5.36
4238 4907 4.817909 CCCCCTCCCTAAGGCGGT 62.818 72.222 0.00 0.00 44.71 5.68
4239 4908 2.284493 CCCCTCCCTAAGGCGGTA 59.716 66.667 0.00 0.00 44.71 4.02
4240 4909 1.383525 CCCCTCCCTAAGGCGGTAA 60.384 63.158 0.00 0.00 44.71 2.85
4241 4910 1.408453 CCCCTCCCTAAGGCGGTAAG 61.408 65.000 0.00 0.00 44.71 2.34
4242 4911 1.408453 CCCTCCCTAAGGCGGTAAGG 61.408 65.000 0.00 0.00 44.71 2.69
4261 4930 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
4262 4931 2.437626 GCGTCGCCTTAAAAACATAGC 58.562 47.619 5.75 0.00 0.00 2.97
4278 4948 7.775053 AAACATAGCTAAAAACTCATCCCAA 57.225 32.000 0.00 0.00 0.00 4.12
4285 4955 8.422577 AGCTAAAAACTCATCCCAAAGTAATT 57.577 30.769 0.00 0.00 0.00 1.40
4397 5069 5.565592 TGATATTTATCATTGGATGCCGC 57.434 39.130 0.00 0.00 37.76 6.53
4469 5141 7.405292 AGTTCAATCTAATCAATCCAGACCAA 58.595 34.615 0.00 0.00 0.00 3.67
4581 5253 9.878599 CAACTACTAGTTTTCACCAACTAATTG 57.121 33.333 0.00 0.00 38.50 2.32
4636 5308 1.909700 TCACCCTCTTCCATTTGCAC 58.090 50.000 0.00 0.00 0.00 4.57
4681 5353 1.000396 CTTGGCCCCTTCTCTTGGG 60.000 63.158 0.00 0.00 45.22 4.12
4703 5375 6.992123 TGGGTGCTTATCTCACTACATAATTG 59.008 38.462 0.00 0.00 34.97 2.32
4760 5432 7.037438 GGTTTCATTTGTCAGTATGCATTCAT 58.963 34.615 3.54 0.00 34.76 2.57
4961 5730 4.767928 AGAGGTCAGTAGTACAGAGTTTGG 59.232 45.833 2.52 0.00 0.00 3.28
5092 5875 7.518188 TCCCAGATTTGAAGAAAACTACTCTT 58.482 34.615 0.00 0.00 35.82 2.85
5144 5927 4.341487 TCGTCCACTTCTTAGATCTGGAA 58.659 43.478 5.18 8.89 32.77 3.53
5178 5961 5.132502 CCTTTGGTCATGCTGGTATTGATA 58.867 41.667 0.00 0.00 0.00 2.15
5230 6013 6.751514 TGTTGTTGCTAGTAATTATGGTGG 57.248 37.500 0.00 0.00 0.00 4.61
5233 6017 6.995511 TGTTGCTAGTAATTATGGTGGTTC 57.004 37.500 0.00 0.00 0.00 3.62
5361 6471 6.630203 AAAAACTTAAAGGGGTTGGTTCTT 57.370 33.333 0.00 0.00 0.00 2.52
5389 6499 4.624913 TGGATAGATGACCCTCAGTTTCT 58.375 43.478 0.00 0.00 0.00 2.52
5474 6770 9.125026 AGCAAAGGTAATGTATCTTTATTGAGG 57.875 33.333 0.00 0.00 37.01 3.86
5475 6771 9.120538 GCAAAGGTAATGTATCTTTATTGAGGA 57.879 33.333 0.00 0.00 37.01 3.71
5504 6800 3.398406 TGAACTTATTCACGCTCAGCAA 58.602 40.909 0.00 0.00 40.01 3.91
5530 6826 5.222505 GGGGGATAAGGTACATACTACCTCT 60.223 48.000 0.00 0.00 46.52 3.69
5541 6837 4.715297 ACATACTACCTCTGTCCGGAATTT 59.285 41.667 5.23 0.00 0.00 1.82
5570 6867 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
5613 6910 5.537674 ACATCCCATTTCTATCCATTTCTGC 59.462 40.000 0.00 0.00 0.00 4.26
5688 6985 1.606668 CTTGGGTTTTTGTCGCAGCTA 59.393 47.619 0.00 0.00 0.00 3.32
5700 6997 4.368315 TGTCGCAGCTATCGAAAATATGT 58.632 39.130 11.18 0.00 37.73 2.29
5707 7004 8.104530 CGCAGCTATCGAAAATATGTTAGTATG 58.895 37.037 1.72 0.00 0.00 2.39
5711 7008 8.584600 GCTATCGAAAATATGTTAGTATGTCCG 58.415 37.037 0.00 0.00 0.00 4.79
6128 7440 9.624697 CTATCTCTAATACAAAGATGTCTGCTC 57.375 37.037 0.00 0.00 41.05 4.26
6175 7487 8.972458 TTAGCAACATTTTCATAGGCTACATA 57.028 30.769 0.00 0.00 32.66 2.29
6206 7518 0.385390 CACCCTTTGTTGTGGCTCAC 59.615 55.000 0.00 0.00 34.56 3.51
6328 8517 1.303317 CCAAGGTTTGCCGCCTACT 60.303 57.895 0.00 0.00 40.50 2.57
6749 8954 7.141363 GCAAATACAGGGTTAGCTTATGATTG 58.859 38.462 0.00 0.00 0.00 2.67
6759 8964 8.981647 GGGTTAGCTTATGATTGCAATAATTTG 58.018 33.333 14.66 8.99 35.85 2.32
6765 8970 9.485206 GCTTATGATTGCAATAATTTGGAAGAT 57.515 29.630 14.66 0.00 44.85 2.40
6957 9164 8.026396 TCATCATCTCATCAGTAAATCCAGAA 57.974 34.615 0.00 0.00 0.00 3.02
7435 9642 4.261447 GCAAGGATGTAAAAAGTCGGTGTT 60.261 41.667 0.00 0.00 0.00 3.32
7436 9643 5.735070 GCAAGGATGTAAAAAGTCGGTGTTT 60.735 40.000 0.00 0.00 0.00 2.83
7437 9644 6.513720 GCAAGGATGTAAAAAGTCGGTGTTTA 60.514 38.462 0.00 0.00 0.00 2.01
7438 9645 6.549912 AGGATGTAAAAAGTCGGTGTTTAC 57.450 37.500 5.14 5.14 37.93 2.01
7439 9646 5.471116 AGGATGTAAAAAGTCGGTGTTTACC 59.529 40.000 8.28 0.00 43.89 2.85
7440 9647 5.471116 GGATGTAAAAAGTCGGTGTTTACCT 59.529 40.000 8.28 1.18 45.22 3.08
7441 9648 6.650390 GGATGTAAAAAGTCGGTGTTTACCTA 59.350 38.462 8.28 0.00 45.22 3.08
7442 9649 6.843069 TGTAAAAAGTCGGTGTTTACCTAC 57.157 37.500 8.28 0.00 45.22 3.18
7443 9650 6.344500 TGTAAAAAGTCGGTGTTTACCTACA 58.656 36.000 8.28 0.00 43.26 2.74
7444 9651 5.996669 AAAAAGTCGGTGTTTACCTACAG 57.003 39.130 4.30 0.00 43.26 2.74
7445 9652 3.672767 AAGTCGGTGTTTACCTACAGG 57.327 47.619 4.30 0.00 43.26 4.00
7446 9653 1.274447 AGTCGGTGTTTACCTACAGGC 59.726 52.381 4.30 0.00 43.26 4.85
7447 9654 1.274447 GTCGGTGTTTACCTACAGGCT 59.726 52.381 0.00 0.00 45.22 4.58
7448 9655 2.493278 GTCGGTGTTTACCTACAGGCTA 59.507 50.000 0.00 0.00 45.22 3.93
7449 9656 2.493278 TCGGTGTTTACCTACAGGCTAC 59.507 50.000 0.00 0.00 45.22 3.58
7450 9657 2.733227 CGGTGTTTACCTACAGGCTACG 60.733 54.545 0.00 0.00 45.22 3.51
7451 9658 2.265683 GTGTTTACCTACAGGCTACGC 58.734 52.381 0.00 0.00 39.32 4.42
7452 9659 1.135315 TGTTTACCTACAGGCTACGCG 60.135 52.381 3.53 3.53 39.32 6.01
7529 9736 9.882996 CTGGTGTAGCAAACATTGTATTATATG 57.117 33.333 0.00 0.00 41.10 1.78
7660 9867 1.538687 GGCCTGCAAATTCCAGTGCT 61.539 55.000 0.00 0.00 41.48 4.40
7672 9879 5.733620 ATTCCAGTGCTTGATGAATTGTT 57.266 34.783 0.00 0.00 0.00 2.83
7708 9915 3.448093 TCAAATGTGGATGTAAGGCCA 57.552 42.857 5.01 0.00 0.00 5.36
7741 9948 2.505819 CCAAAGTAGCCATGGGTAGTCT 59.494 50.000 27.36 17.74 32.11 3.24
7744 9951 1.008449 AGTAGCCATGGGTAGTCTGGT 59.992 52.381 23.83 2.40 32.42 4.00
7768 9975 1.115639 GCGAGCGAGCATTTAATTGC 58.884 50.000 13.25 13.25 43.09 3.56
7876 10084 1.856259 AGATCAGCTCAGACCCCTAGA 59.144 52.381 0.00 0.00 0.00 2.43
7877 10085 2.158475 AGATCAGCTCAGACCCCTAGAG 60.158 54.545 0.00 0.00 0.00 2.43
7878 10086 0.260230 TCAGCTCAGACCCCTAGAGG 59.740 60.000 0.00 0.00 0.00 3.69
7879 10087 1.075600 AGCTCAGACCCCTAGAGGC 60.076 63.158 0.00 0.00 0.00 4.70
7880 10088 2.137528 GCTCAGACCCCTAGAGGCC 61.138 68.421 0.00 0.00 0.00 5.19
7881 10089 1.623625 CTCAGACCCCTAGAGGCCT 59.376 63.158 3.86 3.86 0.00 5.19
7882 10090 0.031616 CTCAGACCCCTAGAGGCCTT 60.032 60.000 6.77 0.00 0.00 4.35
7883 10091 0.325671 TCAGACCCCTAGAGGCCTTG 60.326 60.000 6.77 0.00 0.00 3.61
7924 10132 3.852286 GCAATTTCTGATGTGCCATCAA 58.148 40.909 15.72 5.36 0.00 2.57
7956 10164 6.384015 TGATGTAGGAATATAGCCACCCTATG 59.616 42.308 0.00 0.00 37.34 2.23
7973 10181 5.012561 ACCCTATGCTCAATAGATTCCTCAC 59.987 44.000 0.00 0.00 40.83 3.51
8039 10256 1.460743 CATTGTGATTGACGTGCGTCT 59.539 47.619 22.54 6.27 44.80 4.18
8041 10258 0.858583 TGTGATTGACGTGCGTCTTG 59.141 50.000 22.54 0.00 44.80 3.02
8285 10503 7.806409 TCATTTCAAAGAACTGAGTTGATCA 57.194 32.000 0.90 0.00 36.21 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.193806 AGGATGTCCTAAGTATTTAAACGACTA 57.806 33.333 0.00 0.00 46.48 2.59
2 3 8.075761 AGGATGTCCTAAGTATTTAAACGACT 57.924 34.615 0.00 0.00 46.48 4.18
17 18 8.840200 AGAATGTTAGAAACTAGGATGTCCTA 57.160 34.615 8.43 8.43 46.48 2.94
97 98 4.702612 TGTGGGCGACATACATGTATTTTT 59.297 37.500 15.85 3.52 41.95 1.94
98 99 4.265893 TGTGGGCGACATACATGTATTTT 58.734 39.130 15.85 6.06 41.95 1.82
99 100 3.879998 TGTGGGCGACATACATGTATTT 58.120 40.909 15.85 10.00 41.95 1.40
100 101 3.552132 TGTGGGCGACATACATGTATT 57.448 42.857 15.85 7.79 41.95 1.89
101 102 3.769739 ATGTGGGCGACATACATGTAT 57.230 42.857 13.78 12.75 43.96 2.29
102 103 4.674281 TTATGTGGGCGACATACATGTA 57.326 40.909 20.06 8.27 45.49 2.29
103 104 3.552132 TTATGTGGGCGACATACATGT 57.448 42.857 20.06 2.69 45.49 3.21
104 105 4.064388 TCATTATGTGGGCGACATACATG 58.936 43.478 20.06 21.90 45.49 3.21
105 106 4.350368 TCATTATGTGGGCGACATACAT 57.650 40.909 20.06 13.90 45.49 2.29
106 107 3.828875 TCATTATGTGGGCGACATACA 57.171 42.857 20.06 12.57 45.49 2.29
107 108 4.083324 CCATTCATTATGTGGGCGACATAC 60.083 45.833 20.06 0.00 45.49 2.39
108 109 4.071423 CCATTCATTATGTGGGCGACATA 58.929 43.478 17.02 17.02 43.96 2.29
110 111 2.296792 CCATTCATTATGTGGGCGACA 58.703 47.619 4.40 4.40 39.53 4.35
111 112 1.001378 GCCATTCATTATGTGGGCGAC 60.001 52.381 4.38 0.00 33.58 5.19
112 113 1.317613 GCCATTCATTATGTGGGCGA 58.682 50.000 4.38 0.00 33.58 5.54
113 114 1.031235 TGCCATTCATTATGTGGGCG 58.969 50.000 15.31 0.00 44.21 6.13
114 115 2.483538 GGTTGCCATTCATTATGTGGGC 60.484 50.000 14.14 14.14 41.70 5.36
115 116 2.765135 TGGTTGCCATTCATTATGTGGG 59.235 45.455 4.38 0.82 33.58 4.61
116 117 4.099727 TCATGGTTGCCATTCATTATGTGG 59.900 41.667 0.00 0.00 42.23 4.17
117 118 5.265350 TCATGGTTGCCATTCATTATGTG 57.735 39.130 0.00 0.00 42.23 3.21
118 119 6.779049 ACTATCATGGTTGCCATTCATTATGT 59.221 34.615 0.00 0.00 42.23 2.29
119 120 7.223260 ACTATCATGGTTGCCATTCATTATG 57.777 36.000 0.00 0.00 42.23 1.90
120 121 7.844493 AACTATCATGGTTGCCATTCATTAT 57.156 32.000 0.00 0.00 42.23 1.28
121 122 7.658525 AAACTATCATGGTTGCCATTCATTA 57.341 32.000 0.00 0.00 42.23 1.90
122 123 6.549433 AAACTATCATGGTTGCCATTCATT 57.451 33.333 0.00 0.00 42.23 2.57
123 124 6.407299 GGAAAACTATCATGGTTGCCATTCAT 60.407 38.462 0.00 0.00 42.23 2.57
124 125 5.105392 GGAAAACTATCATGGTTGCCATTCA 60.105 40.000 0.00 0.00 42.23 2.57
125 126 5.105392 TGGAAAACTATCATGGTTGCCATTC 60.105 40.000 5.04 0.00 42.23 2.67
126 127 4.776837 TGGAAAACTATCATGGTTGCCATT 59.223 37.500 5.04 0.00 42.23 3.16
127 128 4.352009 TGGAAAACTATCATGGTTGCCAT 58.648 39.130 5.04 0.00 46.37 4.40
128 129 3.772387 TGGAAAACTATCATGGTTGCCA 58.228 40.909 5.04 5.04 38.19 4.92
129 130 4.462483 TCTTGGAAAACTATCATGGTTGCC 59.538 41.667 0.00 0.00 0.00 4.52
130 131 5.643379 TCTTGGAAAACTATCATGGTTGC 57.357 39.130 0.00 0.00 0.00 4.17
134 135 9.669353 CGATTATTTCTTGGAAAACTATCATGG 57.331 33.333 0.00 0.00 0.00 3.66
137 138 9.667107 ACTCGATTATTTCTTGGAAAACTATCA 57.333 29.630 0.00 0.00 0.00 2.15
138 139 9.922305 CACTCGATTATTTCTTGGAAAACTATC 57.078 33.333 0.00 1.40 0.00 2.08
139 140 9.667107 TCACTCGATTATTTCTTGGAAAACTAT 57.333 29.630 0.00 0.00 0.00 2.12
140 141 9.496873 TTCACTCGATTATTTCTTGGAAAACTA 57.503 29.630 0.00 0.00 0.00 2.24
141 142 7.979444 TCACTCGATTATTTCTTGGAAAACT 57.021 32.000 0.00 0.00 0.00 2.66
142 143 8.504005 TCTTCACTCGATTATTTCTTGGAAAAC 58.496 33.333 0.00 0.00 0.00 2.43
143 144 8.615878 TCTTCACTCGATTATTTCTTGGAAAA 57.384 30.769 0.00 0.00 0.00 2.29
144 145 8.668353 CATCTTCACTCGATTATTTCTTGGAAA 58.332 33.333 0.00 0.00 0.00 3.13
145 146 7.280876 CCATCTTCACTCGATTATTTCTTGGAA 59.719 37.037 0.00 0.00 0.00 3.53
146 147 6.763135 CCATCTTCACTCGATTATTTCTTGGA 59.237 38.462 0.00 0.00 0.00 3.53
147 148 6.017605 CCCATCTTCACTCGATTATTTCTTGG 60.018 42.308 0.00 0.00 0.00 3.61
148 149 6.017605 CCCCATCTTCACTCGATTATTTCTTG 60.018 42.308 0.00 0.00 0.00 3.02
149 150 6.058183 CCCCATCTTCACTCGATTATTTCTT 58.942 40.000 0.00 0.00 0.00 2.52
150 151 5.455326 CCCCCATCTTCACTCGATTATTTCT 60.455 44.000 0.00 0.00 0.00 2.52
151 152 4.757149 CCCCCATCTTCACTCGATTATTTC 59.243 45.833 0.00 0.00 0.00 2.17
152 153 4.718961 CCCCCATCTTCACTCGATTATTT 58.281 43.478 0.00 0.00 0.00 1.40
153 154 3.496870 GCCCCCATCTTCACTCGATTATT 60.497 47.826 0.00 0.00 0.00 1.40
154 155 2.039084 GCCCCCATCTTCACTCGATTAT 59.961 50.000 0.00 0.00 0.00 1.28
155 156 1.416401 GCCCCCATCTTCACTCGATTA 59.584 52.381 0.00 0.00 0.00 1.75
156 157 0.181350 GCCCCCATCTTCACTCGATT 59.819 55.000 0.00 0.00 0.00 3.34
157 158 1.700042 GGCCCCCATCTTCACTCGAT 61.700 60.000 0.00 0.00 0.00 3.59
158 159 2.367202 GGCCCCCATCTTCACTCGA 61.367 63.158 0.00 0.00 0.00 4.04
159 160 2.190578 GGCCCCCATCTTCACTCG 59.809 66.667 0.00 0.00 0.00 4.18
160 161 1.077429 GTGGCCCCCATCTTCACTC 60.077 63.158 0.00 0.00 35.28 3.51
161 162 2.616458 GGTGGCCCCCATCTTCACT 61.616 63.158 0.00 0.00 35.28 3.41
162 163 2.043953 GGTGGCCCCCATCTTCAC 60.044 66.667 0.00 0.00 35.28 3.18
163 164 2.534011 TGGTGGCCCCCATCTTCA 60.534 61.111 1.25 0.00 35.30 3.02
164 165 1.279025 TACTGGTGGCCCCCATCTTC 61.279 60.000 7.67 0.00 35.30 2.87
165 166 0.849094 TTACTGGTGGCCCCCATCTT 60.849 55.000 7.67 0.00 35.30 2.40
166 167 0.849094 TTTACTGGTGGCCCCCATCT 60.849 55.000 7.67 0.00 35.30 2.90
167 168 0.261696 ATTTACTGGTGGCCCCCATC 59.738 55.000 7.67 0.00 35.28 3.51
168 169 0.261696 GATTTACTGGTGGCCCCCAT 59.738 55.000 7.67 0.65 35.28 4.00
169 170 1.143329 TGATTTACTGGTGGCCCCCA 61.143 55.000 6.81 6.81 0.00 4.96
170 171 0.395724 CTGATTTACTGGTGGCCCCC 60.396 60.000 0.00 0.00 0.00 5.40
171 172 0.623723 TCTGATTTACTGGTGGCCCC 59.376 55.000 0.00 0.85 0.00 5.80
172 173 1.004277 TGTCTGATTTACTGGTGGCCC 59.996 52.381 0.00 0.00 0.00 5.80
173 174 2.489938 TGTCTGATTTACTGGTGGCC 57.510 50.000 0.00 0.00 0.00 5.36
174 175 5.391312 AAAATGTCTGATTTACTGGTGGC 57.609 39.130 0.00 0.00 0.00 5.01
175 176 6.370442 TCGTAAAATGTCTGATTTACTGGTGG 59.630 38.462 9.46 0.00 38.99 4.61
176 177 7.359262 TCGTAAAATGTCTGATTTACTGGTG 57.641 36.000 9.46 0.00 38.99 4.17
177 178 6.092259 GCTCGTAAAATGTCTGATTTACTGGT 59.908 38.462 9.46 0.00 38.99 4.00
178 179 6.478588 GCTCGTAAAATGTCTGATTTACTGG 58.521 40.000 9.46 4.95 38.99 4.00
179 180 6.034577 TCGCTCGTAAAATGTCTGATTTACTG 59.965 38.462 9.46 5.18 38.99 2.74
180 181 6.097356 TCGCTCGTAAAATGTCTGATTTACT 58.903 36.000 9.46 0.00 38.99 2.24
181 182 6.327177 TCGCTCGTAAAATGTCTGATTTAC 57.673 37.500 3.43 3.43 38.20 2.01
182 183 6.809689 TCTTCGCTCGTAAAATGTCTGATTTA 59.190 34.615 0.00 0.00 0.00 1.40
183 184 5.637810 TCTTCGCTCGTAAAATGTCTGATTT 59.362 36.000 0.00 0.00 0.00 2.17
184 185 5.062308 GTCTTCGCTCGTAAAATGTCTGATT 59.938 40.000 0.00 0.00 0.00 2.57
185 186 4.563184 GTCTTCGCTCGTAAAATGTCTGAT 59.437 41.667 0.00 0.00 0.00 2.90
186 187 3.918591 GTCTTCGCTCGTAAAATGTCTGA 59.081 43.478 0.00 0.00 0.00 3.27
187 188 3.241364 CGTCTTCGCTCGTAAAATGTCTG 60.241 47.826 0.00 0.00 0.00 3.51
188 189 2.915463 CGTCTTCGCTCGTAAAATGTCT 59.085 45.455 0.00 0.00 0.00 3.41
189 190 2.660236 ACGTCTTCGCTCGTAAAATGTC 59.340 45.455 0.00 0.00 41.18 3.06
190 191 2.407361 CACGTCTTCGCTCGTAAAATGT 59.593 45.455 0.00 0.00 41.18 2.71
191 192 2.659757 TCACGTCTTCGCTCGTAAAATG 59.340 45.455 0.00 0.00 41.18 2.32
192 193 2.937591 TCACGTCTTCGCTCGTAAAAT 58.062 42.857 0.00 0.00 41.18 1.82
193 194 2.404265 TCACGTCTTCGCTCGTAAAA 57.596 45.000 0.00 0.00 41.18 1.52
194 195 2.512885 GATCACGTCTTCGCTCGTAAA 58.487 47.619 0.00 0.00 41.18 2.01
195 196 1.528400 CGATCACGTCTTCGCTCGTAA 60.528 52.381 3.97 0.00 41.18 3.18
196 197 0.025898 CGATCACGTCTTCGCTCGTA 59.974 55.000 3.97 0.00 41.18 3.43
197 198 1.226046 CGATCACGTCTTCGCTCGT 60.226 57.895 3.97 0.00 41.18 4.18
198 199 1.934956 CCGATCACGTCTTCGCTCG 60.935 63.158 10.39 1.24 41.18 5.03
199 200 2.224885 GCCGATCACGTCTTCGCTC 61.225 63.158 10.39 2.49 41.18 5.03
200 201 2.202623 GCCGATCACGTCTTCGCT 60.203 61.111 10.39 0.00 41.18 4.93
201 202 2.506217 TGCCGATCACGTCTTCGC 60.506 61.111 10.39 7.36 41.18 4.70
202 203 3.374330 GTGCCGATCACGTCTTCG 58.626 61.111 9.17 9.17 43.34 3.79
209 210 0.026285 GCGTTACATGTGCCGATCAC 59.974 55.000 19.28 1.53 45.82 3.06
210 211 0.390472 TGCGTTACATGTGCCGATCA 60.390 50.000 19.28 8.52 0.00 2.92
211 212 0.026285 GTGCGTTACATGTGCCGATC 59.974 55.000 19.28 9.44 0.00 3.69
212 213 1.692148 CGTGCGTTACATGTGCCGAT 61.692 55.000 19.28 0.00 0.00 4.18
213 214 2.376538 CGTGCGTTACATGTGCCGA 61.377 57.895 19.28 5.49 0.00 5.54
214 215 2.095656 CGTGCGTTACATGTGCCG 59.904 61.111 9.11 11.43 0.00 5.69
215 216 2.202298 GCGTGCGTTACATGTGCC 60.202 61.111 9.11 0.00 37.62 5.01
216 217 0.658829 TTTGCGTGCGTTACATGTGC 60.659 50.000 9.11 3.92 37.62 4.57
231 232 9.241317 CTCAGAAAAATGTATGGTATGATTTGC 57.759 33.333 0.00 0.00 0.00 3.68
242 243 9.844790 TTGAGCAATAACTCAGAAAAATGTATG 57.155 29.630 0.00 0.00 46.85 2.39
244 245 9.283768 TCTTGAGCAATAACTCAGAAAAATGTA 57.716 29.630 0.00 0.00 46.85 2.29
257 258 6.801862 GTGTGGTGTTTATCTTGAGCAATAAC 59.198 38.462 0.00 0.00 0.00 1.89
339 374 3.411351 GCGTGTACACACAGCCCG 61.411 66.667 24.98 10.77 46.75 6.13
436 471 2.844839 GGAGACGGGGATCAGGGG 60.845 72.222 0.00 0.00 0.00 4.79
457 495 0.464554 CGGATTTGGGGAAGAGGAGC 60.465 60.000 0.00 0.00 0.00 4.70
686 732 1.888512 CTGCCTGCCTAGCTTCAAAAA 59.111 47.619 0.00 0.00 0.00 1.94
687 733 1.538047 CTGCCTGCCTAGCTTCAAAA 58.462 50.000 0.00 0.00 0.00 2.44
688 734 0.322816 CCTGCCTGCCTAGCTTCAAA 60.323 55.000 0.00 0.00 0.00 2.69
689 735 1.300963 CCTGCCTGCCTAGCTTCAA 59.699 57.895 0.00 0.00 0.00 2.69
690 736 2.993008 CCTGCCTGCCTAGCTTCA 59.007 61.111 0.00 0.00 0.00 3.02
691 737 2.515757 GCCTGCCTGCCTAGCTTC 60.516 66.667 0.00 0.00 0.00 3.86
699 745 4.096003 TAACGAGGGCCTGCCTGC 62.096 66.667 12.95 0.00 36.10 4.85
700 746 2.125106 GTAACGAGGGCCTGCCTG 60.125 66.667 12.95 0.00 36.10 4.85
701 747 1.995626 ATGTAACGAGGGCCTGCCT 60.996 57.895 12.95 0.00 36.10 4.75
702 748 1.819632 CATGTAACGAGGGCCTGCC 60.820 63.158 12.95 0.00 0.00 4.85
703 749 1.819632 CCATGTAACGAGGGCCTGC 60.820 63.158 12.95 1.12 0.00 4.85
704 750 0.469917 ATCCATGTAACGAGGGCCTG 59.530 55.000 12.95 6.05 0.00 4.85
705 751 1.134098 CAATCCATGTAACGAGGGCCT 60.134 52.381 5.25 5.25 0.00 5.19
706 752 1.308998 CAATCCATGTAACGAGGGCC 58.691 55.000 0.00 0.00 0.00 5.80
707 753 1.308998 CCAATCCATGTAACGAGGGC 58.691 55.000 0.00 0.00 0.00 5.19
708 754 1.308998 GCCAATCCATGTAACGAGGG 58.691 55.000 0.00 0.00 0.00 4.30
709 755 0.937304 CGCCAATCCATGTAACGAGG 59.063 55.000 0.00 0.00 0.00 4.63
816 862 0.901124 CTCCTCCAGGAACCACTCAG 59.099 60.000 0.00 0.00 44.91 3.35
834 880 1.713078 AGAATTCCCCAAACAGCTCCT 59.287 47.619 0.65 0.00 0.00 3.69
835 881 1.821136 CAGAATTCCCCAAACAGCTCC 59.179 52.381 0.65 0.00 0.00 4.70
836 882 1.821136 CCAGAATTCCCCAAACAGCTC 59.179 52.381 0.65 0.00 0.00 4.09
905 954 3.916172 CCGTGATACCGTATTATTCCGTG 59.084 47.826 0.00 0.00 0.00 4.94
908 957 3.676646 GCACCGTGATACCGTATTATTCC 59.323 47.826 1.65 0.00 0.00 3.01
925 974 2.124983 CTCACCTCCCATGCACCG 60.125 66.667 0.00 0.00 0.00 4.94
950 999 3.331889 CTGATCCCCACCTTATGCCTAAT 59.668 47.826 0.00 0.00 0.00 1.73
955 1004 0.111253 CCCTGATCCCCACCTTATGC 59.889 60.000 0.00 0.00 0.00 3.14
973 1022 2.313643 TCCTTCCTAACCAAAATCCCCC 59.686 50.000 0.00 0.00 0.00 5.40
974 1023 3.627492 CCTCCTTCCTAACCAAAATCCCC 60.627 52.174 0.00 0.00 0.00 4.81
1026 1075 1.805945 CGGCGACTTGTCTACTGCC 60.806 63.158 0.00 7.15 39.10 4.85
1074 1123 1.154205 CCACCGGCTCATGATCGAAC 61.154 60.000 16.86 0.00 0.00 3.95
1096 1145 2.158158 TCTCCTCCTCCTCCTTCAACAA 60.158 50.000 0.00 0.00 0.00 2.83
1097 1146 1.433199 TCTCCTCCTCCTCCTTCAACA 59.567 52.381 0.00 0.00 0.00 3.33
1103 1152 2.007636 ACTTCTTCTCCTCCTCCTCCT 58.992 52.381 0.00 0.00 0.00 3.69
1104 1153 2.384828 GACTTCTTCTCCTCCTCCTCC 58.615 57.143 0.00 0.00 0.00 4.30
1105 1154 2.021457 CGACTTCTTCTCCTCCTCCTC 58.979 57.143 0.00 0.00 0.00 3.71
1144 1193 0.832135 TGCTCTTCCACCCTCTTCGT 60.832 55.000 0.00 0.00 0.00 3.85
1210 1271 3.197549 TGCTCAGCATCTGTACCATTGTA 59.802 43.478 0.00 0.00 31.71 2.41
1219 1280 0.321387 CCTGTGTGCTCAGCATCTGT 60.321 55.000 0.54 0.00 41.91 3.41
1342 1403 3.912907 CGGTACCCTGCGGCCTAG 61.913 72.222 6.25 0.00 0.00 3.02
1423 1484 4.400529 ACGCCATATGTCACTACAATCA 57.599 40.909 1.24 0.00 39.58 2.57
1424 1485 4.211374 GGAACGCCATATGTCACTACAATC 59.789 45.833 1.24 0.00 39.58 2.67
1556 1619 7.613585 TGGAGTAATGGACACTTTATTTCGTA 58.386 34.615 0.00 0.00 0.00 3.43
1599 1664 5.620738 ACTACATGTGCACCATCTAGAAT 57.379 39.130 15.69 0.00 29.48 2.40
1803 1932 8.565416 TCACGACTATATATCACTGAAAATCGT 58.435 33.333 0.00 0.00 38.34 3.73
1804 1933 8.950403 TCACGACTATATATCACTGAAAATCG 57.050 34.615 0.00 0.00 0.00 3.34
1806 1935 8.580720 AGCTCACGACTATATATCACTGAAAAT 58.419 33.333 0.00 0.00 0.00 1.82
1820 1949 5.584253 AATCACACTTAGCTCACGACTAT 57.416 39.130 0.00 0.00 0.00 2.12
1825 1954 5.839262 TTGTTAATCACACTTAGCTCACG 57.161 39.130 0.00 0.00 33.98 4.35
1866 1995 8.926715 AGTTTTTCCTCGGCATTAAATAATTC 57.073 30.769 0.00 0.00 0.00 2.17
1880 2009 5.625251 CAAGATGACATGAGTTTTTCCTCG 58.375 41.667 0.00 0.00 34.04 4.63
1895 2024 6.346518 CCGTTTGGTTTATTTTGCAAGATGAC 60.347 38.462 12.50 10.32 0.00 3.06
1903 2032 2.478514 CTGGCCGTTTGGTTTATTTTGC 59.521 45.455 0.00 0.00 37.67 3.68
1919 2048 0.179119 GCAAAGTCATGCATCTGGCC 60.179 55.000 0.00 0.00 45.70 5.36
2005 2134 4.159506 CCCGAGAAGCCCAAAATAATTGAA 59.840 41.667 0.00 0.00 0.00 2.69
2148 2318 5.234329 TCGAAAAGAGCAAAGACAAGTGTAG 59.766 40.000 0.00 0.00 0.00 2.74
2178 2348 9.295825 ACAATGTTTTATGGAATGAACACTCTA 57.704 29.630 0.00 0.00 36.81 2.43
2219 2389 8.450964 GTTTCAATAGTCAGTATAGCAAGCAAA 58.549 33.333 0.00 0.00 0.00 3.68
2354 2524 3.131046 AGAACTTGAAACAAAGCCACTGG 59.869 43.478 0.00 0.00 0.00 4.00
2367 2537 2.174639 TCCCTTTGCTCCAGAACTTGAA 59.825 45.455 0.00 0.00 0.00 2.69
2746 2916 4.676109 TCATGCATCCCCCTATAAAATGG 58.324 43.478 0.00 0.00 0.00 3.16
2789 2959 5.972382 CAGACGAAGGTAGCACTAATCTTAC 59.028 44.000 0.00 0.00 0.00 2.34
2858 3030 4.630069 CAGTTCTACTGGGGTAATGAAACG 59.370 45.833 0.00 0.00 42.35 3.60
2982 3154 7.429633 TGCCAAAACGAATAATCTCTTTTGAA 58.570 30.769 10.15 0.54 34.95 2.69
3077 3249 3.733443 AATCACCTTTGCCAAAGACAC 57.267 42.857 18.59 0.00 41.02 3.67
3145 3321 2.172505 TGCTGGGAAGTTCTTTCTGACA 59.827 45.455 2.25 0.00 36.03 3.58
3361 3538 6.587990 CCCAGATATTGCTACGTTCTATTCAG 59.412 42.308 0.00 0.00 0.00 3.02
3408 3585 2.698803 TGATCATGGACCACTCAAACG 58.301 47.619 0.00 0.00 0.00 3.60
3526 3742 8.819974 CAAAACTGAAAATGTTTGATGCTTACT 58.180 29.630 0.00 0.00 37.64 2.24
3533 3749 7.986320 TGATGGTCAAAACTGAAAATGTTTGAT 59.014 29.630 1.46 0.00 37.64 2.57
3794 4073 7.895144 TGATATAATTCCTGAGGGGAGAAAT 57.105 36.000 0.00 0.00 46.01 2.17
3925 4228 3.501445 GCAGCTAGGCCTGATAAATCAAG 59.499 47.826 17.99 1.59 36.18 3.02
4104 4773 5.074804 AGGGACGCTTTAAAAACATAGGTT 58.925 37.500 0.00 0.00 39.43 3.50
4105 4774 4.659115 AGGGACGCTTTAAAAACATAGGT 58.341 39.130 0.00 0.00 0.00 3.08
4106 4775 6.183360 CCTTAGGGACGCTTTAAAAACATAGG 60.183 42.308 0.00 0.00 33.58 2.57
4107 4776 6.677187 GCCTTAGGGACGCTTTAAAAACATAG 60.677 42.308 0.00 0.00 33.58 2.23
4108 4777 5.124297 GCCTTAGGGACGCTTTAAAAACATA 59.876 40.000 0.00 0.00 33.58 2.29
4109 4778 4.082408 GCCTTAGGGACGCTTTAAAAACAT 60.082 41.667 0.00 0.00 33.58 2.71
4110 4779 3.253921 GCCTTAGGGACGCTTTAAAAACA 59.746 43.478 0.00 0.00 33.58 2.83
4111 4780 3.668757 CGCCTTAGGGACGCTTTAAAAAC 60.669 47.826 0.00 0.00 33.58 2.43
4112 4781 2.485038 CGCCTTAGGGACGCTTTAAAAA 59.515 45.455 0.00 0.00 33.58 1.94
4113 4782 2.078392 CGCCTTAGGGACGCTTTAAAA 58.922 47.619 0.00 0.00 33.58 1.52
4114 4783 1.275856 TCGCCTTAGGGACGCTTTAAA 59.724 47.619 0.00 0.00 34.09 1.52
4115 4784 0.896923 TCGCCTTAGGGACGCTTTAA 59.103 50.000 0.00 0.00 34.09 1.52
4116 4785 0.174162 GTCGCCTTAGGGACGCTTTA 59.826 55.000 0.00 0.00 44.82 1.85
4117 4786 1.079336 GTCGCCTTAGGGACGCTTT 60.079 57.895 0.00 0.00 44.82 3.51
4118 4787 2.577593 GTCGCCTTAGGGACGCTT 59.422 61.111 0.00 0.00 44.82 4.68
4144 4813 4.516195 GAGGGGGAGCGCTTCGAC 62.516 72.222 13.26 5.82 0.00 4.20
4152 4821 4.803908 CCAAAGCGGAGGGGGAGC 62.804 72.222 0.00 0.00 36.56 4.70
4153 4822 3.009115 TCCAAAGCGGAGGGGGAG 61.009 66.667 0.00 0.00 39.64 4.30
4160 4829 1.161843 GGTCGATTTTCCAAAGCGGA 58.838 50.000 7.00 0.00 44.40 5.54
4161 4830 0.179200 CGGTCGATTTTCCAAAGCGG 60.179 55.000 7.00 0.00 0.00 5.52
4162 4831 0.793104 GCGGTCGATTTTCCAAAGCG 60.793 55.000 0.54 0.54 0.00 4.68
4163 4832 0.521735 AGCGGTCGATTTTCCAAAGC 59.478 50.000 0.00 0.00 0.00 3.51
4164 4833 2.979813 CAAAGCGGTCGATTTTCCAAAG 59.020 45.455 3.79 0.00 30.80 2.77
4165 4834 2.287909 CCAAAGCGGTCGATTTTCCAAA 60.288 45.455 3.79 0.00 30.80 3.28
4166 4835 1.268352 CCAAAGCGGTCGATTTTCCAA 59.732 47.619 3.79 0.00 30.80 3.53
4167 4836 0.878416 CCAAAGCGGTCGATTTTCCA 59.122 50.000 3.79 0.00 30.80 3.53
4168 4837 0.170339 CCCAAAGCGGTCGATTTTCC 59.830 55.000 3.79 0.00 30.80 3.13
4169 4838 0.456142 GCCCAAAGCGGTCGATTTTC 60.456 55.000 3.79 0.00 30.80 2.29
4170 4839 1.584495 GCCCAAAGCGGTCGATTTT 59.416 52.632 3.79 0.00 30.80 1.82
4171 4840 3.274067 GCCCAAAGCGGTCGATTT 58.726 55.556 0.55 0.55 33.72 2.17
4225 4894 1.446366 GCCTTACCGCCTTAGGGAG 59.554 63.158 0.00 0.00 35.02 4.30
4226 4895 2.428925 CGCCTTACCGCCTTAGGGA 61.429 63.158 0.00 0.00 35.02 4.20
4227 4896 2.108362 CGCCTTACCGCCTTAGGG 59.892 66.667 0.00 0.00 35.02 3.53
4228 4897 1.227176 GACGCCTTACCGCCTTAGG 60.227 63.158 0.00 0.00 37.30 2.69
4229 4898 1.588139 CGACGCCTTACCGCCTTAG 60.588 63.158 0.00 0.00 0.00 2.18
4230 4899 2.491152 CGACGCCTTACCGCCTTA 59.509 61.111 0.00 0.00 0.00 2.69
4242 4911 2.095372 AGCTATGTTTTTAAGGCGACGC 59.905 45.455 12.43 12.43 0.00 5.19
4243 4912 5.459110 TTAGCTATGTTTTTAAGGCGACG 57.541 39.130 0.00 0.00 0.00 5.12
4244 4913 7.806487 AGTTTTTAGCTATGTTTTTAAGGCGAC 59.194 33.333 0.00 0.00 0.00 5.19
4245 4914 7.878036 AGTTTTTAGCTATGTTTTTAAGGCGA 58.122 30.769 0.00 0.00 0.00 5.54
4246 4915 7.806014 TGAGTTTTTAGCTATGTTTTTAAGGCG 59.194 33.333 0.00 0.00 0.00 5.52
4247 4916 9.639601 ATGAGTTTTTAGCTATGTTTTTAAGGC 57.360 29.630 0.00 0.00 0.00 4.35
4251 4920 9.303116 TGGGATGAGTTTTTAGCTATGTTTTTA 57.697 29.630 0.00 0.00 0.00 1.52
4252 4921 8.189119 TGGGATGAGTTTTTAGCTATGTTTTT 57.811 30.769 0.00 0.00 0.00 1.94
4253 4922 7.775053 TGGGATGAGTTTTTAGCTATGTTTT 57.225 32.000 0.00 0.00 0.00 2.43
4254 4923 7.775053 TTGGGATGAGTTTTTAGCTATGTTT 57.225 32.000 0.00 0.00 0.00 2.83
4255 4924 7.451566 ACTTTGGGATGAGTTTTTAGCTATGTT 59.548 33.333 0.00 0.00 0.00 2.71
4256 4925 6.948309 ACTTTGGGATGAGTTTTTAGCTATGT 59.052 34.615 0.00 0.00 0.00 2.29
4257 4926 7.396540 ACTTTGGGATGAGTTTTTAGCTATG 57.603 36.000 0.00 0.00 0.00 2.23
4258 4927 9.700831 ATTACTTTGGGATGAGTTTTTAGCTAT 57.299 29.630 0.00 0.00 0.00 2.97
4259 4928 9.528489 AATTACTTTGGGATGAGTTTTTAGCTA 57.472 29.630 0.00 0.00 0.00 3.32
4260 4929 8.422577 AATTACTTTGGGATGAGTTTTTAGCT 57.577 30.769 0.00 0.00 0.00 3.32
4261 4930 7.759886 GGAATTACTTTGGGATGAGTTTTTAGC 59.240 37.037 0.00 0.00 0.00 3.09
4262 4931 9.025041 AGGAATTACTTTGGGATGAGTTTTTAG 57.975 33.333 0.00 0.00 0.00 1.85
4278 4948 6.655078 ATGCACACAAGAAAGGAATTACTT 57.345 33.333 0.00 0.00 0.00 2.24
4285 4955 5.483685 ACTACTATGCACACAAGAAAGGA 57.516 39.130 0.00 0.00 0.00 3.36
4469 5141 3.637273 GGACCAGTCCCGCTTGGT 61.637 66.667 5.46 0.00 43.94 3.67
4581 5253 3.500680 TGAAACGTCAAGATGTAAAGGGC 59.499 43.478 0.00 0.00 0.00 5.19
4794 5466 1.336440 CTCGTCACTAGCATCCCTCTG 59.664 57.143 0.00 0.00 0.00 3.35
4840 5609 5.620738 AGTATATGCAGATTGTCACCTGT 57.379 39.130 0.00 0.00 33.19 4.00
4850 5619 6.933521 CACTTCCTGCTTTAGTATATGCAGAT 59.066 38.462 14.33 0.00 45.23 2.90
5092 5875 4.405116 AGCTTTTCAATCACCTGCAAAA 57.595 36.364 0.00 0.00 0.00 2.44
5144 5927 5.129815 AGCATGACCAAAGGCATCATAAATT 59.870 36.000 0.00 0.00 31.83 1.82
5178 5961 3.981071 TGTAAGACAGCAGCCATAAGT 57.019 42.857 0.00 0.00 0.00 2.24
5230 6013 8.119226 GCAAAGCATATATATGATCCTTCGAAC 58.881 37.037 24.06 4.61 35.75 3.95
5233 6017 7.783090 AGCAAAGCATATATATGATCCTTCG 57.217 36.000 24.06 10.06 35.75 3.79
5342 6452 4.141801 GCAAAAGAACCAACCCCTTTAAGT 60.142 41.667 0.00 0.00 30.75 2.24
5361 6471 2.439507 GAGGGTCATCTATCCAGGCAAA 59.560 50.000 0.00 0.00 0.00 3.68
5389 6499 9.627123 AAGAGGTTTATTCGATATGGATGAAAA 57.373 29.630 0.00 0.00 0.00 2.29
5434 6544 0.468958 TTTGCTTGGCTAAGGGTGCA 60.469 50.000 12.16 0.91 34.40 4.57
5474 6770 3.063997 CGTGAATAAGTTCAGGGCATGTC 59.936 47.826 0.00 0.00 44.58 3.06
5475 6771 3.009723 CGTGAATAAGTTCAGGGCATGT 58.990 45.455 0.00 0.00 44.58 3.21
5530 6826 2.070783 GCGACAAGTAAATTCCGGACA 58.929 47.619 1.83 0.00 0.00 4.02
5541 6837 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
5591 6888 4.763793 CGCAGAAATGGATAGAAATGGGAT 59.236 41.667 0.00 0.00 0.00 3.85
5592 6889 4.136796 CGCAGAAATGGATAGAAATGGGA 58.863 43.478 0.00 0.00 0.00 4.37
5593 6890 4.023707 GTCGCAGAAATGGATAGAAATGGG 60.024 45.833 0.00 0.00 39.69 4.00
5594 6891 4.576053 TGTCGCAGAAATGGATAGAAATGG 59.424 41.667 0.00 0.00 39.69 3.16
5595 6892 5.739752 TGTCGCAGAAATGGATAGAAATG 57.260 39.130 0.00 0.00 39.69 2.32
5596 6893 5.882557 ACTTGTCGCAGAAATGGATAGAAAT 59.117 36.000 0.00 0.00 39.69 2.17
5597 6894 5.245531 ACTTGTCGCAGAAATGGATAGAAA 58.754 37.500 0.00 0.00 39.69 2.52
5598 6895 4.832248 ACTTGTCGCAGAAATGGATAGAA 58.168 39.130 0.00 0.00 39.69 2.10
5599 6896 4.471904 ACTTGTCGCAGAAATGGATAGA 57.528 40.909 0.00 0.00 39.69 1.98
5600 6897 6.851222 ATTACTTGTCGCAGAAATGGATAG 57.149 37.500 0.00 0.00 39.69 2.08
5601 6898 6.019075 CGAATTACTTGTCGCAGAAATGGATA 60.019 38.462 0.00 0.00 39.69 2.59
5613 6910 1.135315 TCCGTCCCGAATTACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
5679 6976 4.974103 ACATATTTTCGATAGCTGCGAC 57.026 40.909 12.24 0.00 37.52 5.19
5688 6985 7.384115 CACCGGACATACTAACATATTTTCGAT 59.616 37.037 9.46 0.00 0.00 3.59
5700 6997 2.453521 ACTGAGCACCGGACATACTAA 58.546 47.619 9.46 0.00 0.00 2.24
5707 7004 2.414161 GCAATTAAACTGAGCACCGGAC 60.414 50.000 9.46 0.00 0.00 4.79
5711 7008 4.178545 ACATGCAATTAAACTGAGCACC 57.821 40.909 0.00 0.00 38.12 5.01
5768 7068 1.798283 TGCATGCACAAAAGCCATTC 58.202 45.000 18.46 0.00 0.00 2.67
5846 7146 2.015736 AGAATCAGCCTACACTTGCG 57.984 50.000 0.00 0.00 0.00 4.85
5848 7148 4.318332 TGACAAGAATCAGCCTACACTTG 58.682 43.478 0.00 0.00 39.98 3.16
6128 7440 9.346725 GCTAATTTTGTAAGAATCTTGAACTGG 57.653 33.333 5.64 0.00 0.00 4.00
6156 7468 8.623903 CACAACATATGTAGCCTATGAAAATGT 58.376 33.333 9.21 2.03 41.46 2.71
6175 7487 1.682854 CAAAGGGTGACTGCACAACAT 59.317 47.619 0.00 0.00 46.96 2.71
6206 7518 2.479656 CCCAAAACCAATGACAATTGCG 59.520 45.455 5.05 0.00 41.66 4.85
6328 8517 0.391661 GCCGGAGAGCAGATTTGACA 60.392 55.000 5.05 0.00 0.00 3.58
6749 8954 9.997482 TTCGTTAGTTATCTTCCAAATTATTGC 57.003 29.630 0.00 0.00 35.10 3.56
6957 9164 4.910304 AGACCTTATATCTCCATTGGCTGT 59.090 41.667 0.00 0.00 0.00 4.40
7529 9736 2.161211 GCTCTTCTGTTCAGAACATGGC 59.839 50.000 16.53 11.89 41.26 4.40
7660 9867 9.926158 ATGTTATGCTGTTAAACAATTCATCAA 57.074 25.926 0.00 0.00 36.75 2.57
7672 9879 8.363390 TCCACATTTGAAATGTTATGCTGTTAA 58.637 29.630 20.00 0.00 0.00 2.01
7708 9915 6.418057 TGGCTACTTTGGTGAAATTTGATT 57.582 33.333 0.00 0.00 0.00 2.57
7741 9948 1.079474 TGCTCGCTCGCATTTACCA 60.079 52.632 0.00 0.00 34.44 3.25
7834 10042 6.653020 TCTGTATGAGCATATGAAAGTTGGT 58.347 36.000 6.97 0.00 0.00 3.67
7845 10053 5.048154 GTCTGAGCTGATCTGTATGAGCATA 60.048 44.000 0.00 0.00 44.02 3.14
7876 10084 2.108250 AGTTACATGGTTGTCAAGGCCT 59.892 45.455 0.00 0.00 37.28 5.19
7877 10085 2.514803 AGTTACATGGTTGTCAAGGCC 58.485 47.619 0.00 0.00 37.28 5.19
7878 10086 4.069304 TGTAGTTACATGGTTGTCAAGGC 58.931 43.478 0.00 0.00 37.28 4.35
7924 10132 6.554982 TGGCTATATTCCTACATCACAAGTCT 59.445 38.462 0.00 0.00 0.00 3.24
7940 10148 5.786121 ATTGAGCATAGGGTGGCTATATT 57.214 39.130 0.00 0.00 41.22 1.28
7956 10164 4.141846 TGTGGAGTGAGGAATCTATTGAGC 60.142 45.833 0.00 0.00 0.00 4.26
7973 10181 3.517901 TGGACCTTAACCTATGTGTGGAG 59.482 47.826 0.00 0.00 0.00 3.86
8039 10256 2.101415 CCAGAGATCATACTCACCGCAA 59.899 50.000 0.00 0.00 39.14 4.85
8041 10258 1.683917 ACCAGAGATCATACTCACCGC 59.316 52.381 0.00 0.00 39.14 5.68
8285 10503 3.987220 GACTGCGGCAAATTGTATGTTTT 59.013 39.130 3.44 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.