Multiple sequence alignment - TraesCS1A01G268900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G268900 chr1A 100.000 3588 0 0 1 3588 463524392 463520805 0.000000e+00 6626
1 TraesCS1A01G268900 chr1A 93.359 256 16 1 3334 3588 28615960 28616215 9.400000e-101 377
2 TraesCS1A01G268900 chr1B 90.892 2075 121 36 761 2806 488038996 488036961 0.000000e+00 2723
3 TraesCS1A01G268900 chr1B 96.711 152 5 0 3186 3337 488036370 488036219 1.650000e-63 254
4 TraesCS1A01G268900 chr1D 91.238 1963 91 26 1060 2969 364697010 364695076 0.000000e+00 2597
5 TraesCS1A01G268900 chr1D 90.075 1471 71 33 1915 3337 364696145 364694702 0.000000e+00 1838
6 TraesCS1A01G268900 chr1D 78.626 393 49 15 660 1034 364697380 364697005 1.000000e-55 228
7 TraesCS1A01G268900 chr7A 92.941 255 17 1 3335 3588 573078708 573078962 1.570000e-98 370
8 TraesCS1A01G268900 chr5D 92.607 257 17 2 3333 3588 58674056 58674311 5.660000e-98 368
9 TraesCS1A01G268900 chr5A 93.227 251 15 2 3339 3588 604748504 604748255 5.660000e-98 368
10 TraesCS1A01G268900 chr2D 79.123 570 91 20 1309 1863 374073206 374073762 5.660000e-98 368
11 TraesCS1A01G268900 chr6D 92.248 258 18 2 3332 3588 308586220 308585964 7.320000e-97 364
12 TraesCS1A01G268900 chr6D 74.717 530 115 17 1643 2157 126429693 126430218 6.030000e-53 219
13 TraesCS1A01G268900 chr6A 91.667 264 20 2 3326 3588 602490130 602489868 7.320000e-97 364
14 TraesCS1A01G268900 chr6A 84.466 206 32 0 1658 1863 153679410 153679205 1.690000e-48 204
15 TraesCS1A01G268900 chr3A 92.248 258 18 2 3332 3588 475394422 475394678 7.320000e-97 364
16 TraesCS1A01G268900 chr2A 91.954 261 19 2 3329 3588 202777960 202777701 7.320000e-97 364
17 TraesCS1A01G268900 chr2A 90.182 275 26 1 3315 3588 717393839 717393565 1.230000e-94 357
18 TraesCS1A01G268900 chr2A 78.201 578 101 20 1296 1863 507029749 507030311 2.650000e-91 346
19 TraesCS1A01G268900 chr2B 78.772 570 93 20 1309 1863 444499622 444500178 1.230000e-94 357
20 TraesCS1A01G268900 chr6B 82.110 218 39 0 1643 1860 224865991 224866208 1.700000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G268900 chr1A 463520805 463524392 3587 True 6626.000000 6626 100.000000 1 3588 1 chr1A.!!$R1 3587
1 TraesCS1A01G268900 chr1B 488036219 488038996 2777 True 1488.500000 2723 93.801500 761 3337 2 chr1B.!!$R1 2576
2 TraesCS1A01G268900 chr1D 364694702 364697380 2678 True 1554.333333 2597 86.646333 660 3337 3 chr1D.!!$R1 2677
3 TraesCS1A01G268900 chr2D 374073206 374073762 556 False 368.000000 368 79.123000 1309 1863 1 chr2D.!!$F1 554
4 TraesCS1A01G268900 chr6D 126429693 126430218 525 False 219.000000 219 74.717000 1643 2157 1 chr6D.!!$F1 514
5 TraesCS1A01G268900 chr2A 507029749 507030311 562 False 346.000000 346 78.201000 1296 1863 1 chr2A.!!$F1 567
6 TraesCS1A01G268900 chr2B 444499622 444500178 556 False 357.000000 357 78.772000 1309 1863 1 chr2B.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.031857 TTTCGCAAGGCAACCATGTG 59.968 50.0 0.00 0.00 36.16 3.21 F
756 759 0.041312 GAATGCACAGAAACACGCGT 60.041 50.0 5.58 5.58 0.00 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1460 1479 0.324943 TGTACTTGGCCTGCTCCTTC 59.675 55.0 3.32 0.0 0.0 3.46 R
2591 2697 0.435008 CTCTCGCTCGAAACAAACCG 59.565 55.0 0.00 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.090250 TGTACAATTACACACCATTCACTTAC 57.910 34.615 0.00 0.00 32.98 2.34
59 60 6.569179 ACAATTACACACCATTCACTTACC 57.431 37.500 0.00 0.00 0.00 2.85
60 61 5.475564 ACAATTACACACCATTCACTTACCC 59.524 40.000 0.00 0.00 0.00 3.69
61 62 2.579410 ACACACCATTCACTTACCCC 57.421 50.000 0.00 0.00 0.00 4.95
62 63 2.062636 ACACACCATTCACTTACCCCT 58.937 47.619 0.00 0.00 0.00 4.79
63 64 3.253220 ACACACCATTCACTTACCCCTA 58.747 45.455 0.00 0.00 0.00 3.53
64 65 3.850173 ACACACCATTCACTTACCCCTAT 59.150 43.478 0.00 0.00 0.00 2.57
65 66 5.034200 ACACACCATTCACTTACCCCTATA 58.966 41.667 0.00 0.00 0.00 1.31
66 67 5.670361 ACACACCATTCACTTACCCCTATAT 59.330 40.000 0.00 0.00 0.00 0.86
67 68 6.159751 ACACACCATTCACTTACCCCTATATT 59.840 38.462 0.00 0.00 0.00 1.28
68 69 7.348801 ACACACCATTCACTTACCCCTATATTA 59.651 37.037 0.00 0.00 0.00 0.98
69 70 8.383175 CACACCATTCACTTACCCCTATATTAT 58.617 37.037 0.00 0.00 0.00 1.28
70 71 8.603304 ACACCATTCACTTACCCCTATATTATC 58.397 37.037 0.00 0.00 0.00 1.75
71 72 8.047310 CACCATTCACTTACCCCTATATTATCC 58.953 40.741 0.00 0.00 0.00 2.59
72 73 7.742213 ACCATTCACTTACCCCTATATTATCCA 59.258 37.037 0.00 0.00 0.00 3.41
73 74 8.781951 CCATTCACTTACCCCTATATTATCCAT 58.218 37.037 0.00 0.00 0.00 3.41
127 128 9.956720 AAGTATGATATTTATGACAGCAAAAGC 57.043 29.630 0.00 0.00 0.00 3.51
128 129 9.123902 AGTATGATATTTATGACAGCAAAAGCA 57.876 29.630 0.00 0.00 0.00 3.91
129 130 9.734620 GTATGATATTTATGACAGCAAAAGCAA 57.265 29.630 0.00 0.00 0.00 3.91
130 131 8.638685 ATGATATTTATGACAGCAAAAGCAAC 57.361 30.769 0.00 0.00 0.00 4.17
131 132 7.829725 TGATATTTATGACAGCAAAAGCAACT 58.170 30.769 0.00 0.00 0.00 3.16
132 133 8.955388 TGATATTTATGACAGCAAAAGCAACTA 58.045 29.630 0.00 0.00 0.00 2.24
133 134 9.787532 GATATTTATGACAGCAAAAGCAACTAA 57.212 29.630 0.00 0.00 0.00 2.24
136 137 8.885494 TTTATGACAGCAAAAGCAACTAAATT 57.115 26.923 0.00 0.00 0.00 1.82
137 138 9.973450 TTTATGACAGCAAAAGCAACTAAATTA 57.027 25.926 0.00 0.00 0.00 1.40
138 139 7.873739 ATGACAGCAAAAGCAACTAAATTAC 57.126 32.000 0.00 0.00 0.00 1.89
139 140 7.038154 TGACAGCAAAAGCAACTAAATTACT 57.962 32.000 0.00 0.00 0.00 2.24
140 141 7.488322 TGACAGCAAAAGCAACTAAATTACTT 58.512 30.769 0.00 0.00 0.00 2.24
141 142 7.434897 TGACAGCAAAAGCAACTAAATTACTTG 59.565 33.333 0.00 0.00 0.00 3.16
142 143 7.264947 ACAGCAAAAGCAACTAAATTACTTGT 58.735 30.769 0.00 0.00 0.00 3.16
143 144 7.222611 ACAGCAAAAGCAACTAAATTACTTGTG 59.777 33.333 0.00 0.00 33.45 3.33
144 145 7.434897 CAGCAAAAGCAACTAAATTACTTGTGA 59.565 33.333 0.00 0.00 32.39 3.58
145 146 7.649306 AGCAAAAGCAACTAAATTACTTGTGAG 59.351 33.333 0.00 0.00 32.39 3.51
146 147 7.567590 GCAAAAGCAACTAAATTACTTGTGAGC 60.568 37.037 0.00 0.00 32.39 4.26
147 148 6.633500 AAGCAACTAAATTACTTGTGAGCA 57.367 33.333 0.00 0.00 0.00 4.26
148 149 6.002062 AGCAACTAAATTACTTGTGAGCAC 57.998 37.500 0.00 0.00 0.00 4.40
149 150 5.530915 AGCAACTAAATTACTTGTGAGCACA 59.469 36.000 0.00 0.00 39.98 4.57
159 160 2.363306 TGTGAGCACAATTGTTCCCT 57.637 45.000 8.77 5.62 38.56 4.20
160 161 1.955778 TGTGAGCACAATTGTTCCCTG 59.044 47.619 8.77 0.00 38.56 4.45
161 162 1.956477 GTGAGCACAATTGTTCCCTGT 59.044 47.619 8.77 0.00 32.11 4.00
162 163 2.362077 GTGAGCACAATTGTTCCCTGTT 59.638 45.455 8.77 0.00 32.11 3.16
163 164 2.361757 TGAGCACAATTGTTCCCTGTTG 59.638 45.455 8.77 0.00 32.11 3.33
164 165 1.069049 AGCACAATTGTTCCCTGTTGC 59.931 47.619 8.77 6.82 0.00 4.17
165 166 1.069049 GCACAATTGTTCCCTGTTGCT 59.931 47.619 8.77 0.00 0.00 3.91
166 167 2.483538 GCACAATTGTTCCCTGTTGCTT 60.484 45.455 8.77 0.00 0.00 3.91
167 168 3.795877 CACAATTGTTCCCTGTTGCTTT 58.204 40.909 8.77 0.00 0.00 3.51
168 169 3.803778 CACAATTGTTCCCTGTTGCTTTC 59.196 43.478 8.77 0.00 0.00 2.62
169 170 3.052036 CAATTGTTCCCTGTTGCTTTCG 58.948 45.455 0.00 0.00 0.00 3.46
170 171 0.383949 TTGTTCCCTGTTGCTTTCGC 59.616 50.000 0.00 0.00 0.00 4.70
171 172 0.749818 TGTTCCCTGTTGCTTTCGCA 60.750 50.000 0.00 0.00 46.24 5.10
179 180 2.727544 TGCTTTCGCAAGGCAACC 59.272 55.556 0.00 0.00 44.62 3.77
180 181 2.124060 TGCTTTCGCAAGGCAACCA 61.124 52.632 0.00 0.00 44.62 3.67
181 182 1.290009 GCTTTCGCAAGGCAACCAT 59.710 52.632 0.00 0.00 35.78 3.55
182 183 1.010419 GCTTTCGCAAGGCAACCATG 61.010 55.000 0.00 0.00 35.78 3.66
183 184 0.314935 CTTTCGCAAGGCAACCATGT 59.685 50.000 0.00 0.00 38.47 3.21
184 185 0.031857 TTTCGCAAGGCAACCATGTG 59.968 50.000 0.00 0.00 36.16 3.21
185 186 1.804396 TTCGCAAGGCAACCATGTGG 61.804 55.000 2.92 0.00 35.69 4.17
186 187 2.974692 TCGCAAGGCAACCATGTGGT 62.975 55.000 0.00 0.00 45.54 4.16
199 200 4.675976 CCATGTGGTTGCCAATCATTAT 57.324 40.909 0.00 0.00 34.18 1.28
200 201 4.624015 CCATGTGGTTGCCAATCATTATC 58.376 43.478 0.00 0.00 34.18 1.75
201 202 4.099727 CCATGTGGTTGCCAATCATTATCA 59.900 41.667 0.00 0.00 34.18 2.15
202 203 4.717233 TGTGGTTGCCAATCATTATCAC 57.283 40.909 0.00 0.00 34.18 3.06
203 204 4.343231 TGTGGTTGCCAATCATTATCACT 58.657 39.130 0.00 0.00 34.18 3.41
204 205 4.771577 TGTGGTTGCCAATCATTATCACTT 59.228 37.500 0.00 0.00 34.18 3.16
205 206 5.245751 TGTGGTTGCCAATCATTATCACTTT 59.754 36.000 0.00 0.00 34.18 2.66
206 207 6.165577 GTGGTTGCCAATCATTATCACTTTT 58.834 36.000 0.00 0.00 34.18 2.27
207 208 6.650390 GTGGTTGCCAATCATTATCACTTTTT 59.350 34.615 0.00 0.00 34.18 1.94
255 256 8.944212 ATTAATTGGAAAGTAGTTTTTCGTCG 57.056 30.769 0.00 0.00 37.82 5.12
256 257 3.865224 TGGAAAGTAGTTTTTCGTCGC 57.135 42.857 0.00 0.00 37.82 5.19
257 258 3.460103 TGGAAAGTAGTTTTTCGTCGCT 58.540 40.909 0.00 0.00 37.82 4.93
258 259 3.492011 TGGAAAGTAGTTTTTCGTCGCTC 59.508 43.478 0.00 0.00 37.82 5.03
259 260 3.492011 GGAAAGTAGTTTTTCGTCGCTCA 59.508 43.478 0.00 0.00 37.82 4.26
260 261 4.025480 GGAAAGTAGTTTTTCGTCGCTCAA 60.025 41.667 0.00 0.00 37.82 3.02
261 262 4.710528 AAGTAGTTTTTCGTCGCTCAAG 57.289 40.909 0.00 0.00 0.00 3.02
262 263 2.475487 AGTAGTTTTTCGTCGCTCAAGC 59.525 45.455 0.00 0.00 37.78 4.01
263 264 1.583054 AGTTTTTCGTCGCTCAAGCT 58.417 45.000 0.00 0.00 39.32 3.74
264 265 1.527311 AGTTTTTCGTCGCTCAAGCTC 59.473 47.619 0.00 0.00 39.32 4.09
265 266 0.865769 TTTTTCGTCGCTCAAGCTCC 59.134 50.000 0.00 0.00 39.32 4.70
266 267 0.249699 TTTTCGTCGCTCAAGCTCCA 60.250 50.000 0.00 0.00 39.32 3.86
267 268 0.944311 TTTCGTCGCTCAAGCTCCAC 60.944 55.000 0.00 0.00 39.32 4.02
268 269 1.806461 TTCGTCGCTCAAGCTCCACT 61.806 55.000 0.00 0.00 39.32 4.00
269 270 2.091112 CGTCGCTCAAGCTCCACTG 61.091 63.158 0.00 0.00 39.32 3.66
270 271 1.290324 GTCGCTCAAGCTCCACTGA 59.710 57.895 0.00 0.00 39.32 3.41
271 272 0.319900 GTCGCTCAAGCTCCACTGAA 60.320 55.000 0.00 0.00 39.32 3.02
272 273 0.610174 TCGCTCAAGCTCCACTGAAT 59.390 50.000 0.00 0.00 39.32 2.57
273 274 1.005340 CGCTCAAGCTCCACTGAATC 58.995 55.000 0.00 0.00 39.32 2.52
274 275 1.377536 GCTCAAGCTCCACTGAATCC 58.622 55.000 0.00 0.00 38.21 3.01
275 276 1.339438 GCTCAAGCTCCACTGAATCCA 60.339 52.381 0.00 0.00 38.21 3.41
276 277 2.877300 GCTCAAGCTCCACTGAATCCAA 60.877 50.000 0.00 0.00 38.21 3.53
277 278 3.008330 CTCAAGCTCCACTGAATCCAAG 58.992 50.000 0.00 0.00 0.00 3.61
278 279 2.373169 TCAAGCTCCACTGAATCCAAGT 59.627 45.455 0.00 0.00 0.00 3.16
279 280 3.582647 TCAAGCTCCACTGAATCCAAGTA 59.417 43.478 0.00 0.00 0.00 2.24
280 281 4.041567 TCAAGCTCCACTGAATCCAAGTAA 59.958 41.667 0.00 0.00 0.00 2.24
281 282 4.640771 AGCTCCACTGAATCCAAGTAAA 57.359 40.909 0.00 0.00 0.00 2.01
282 283 4.985538 AGCTCCACTGAATCCAAGTAAAA 58.014 39.130 0.00 0.00 0.00 1.52
283 284 5.006386 AGCTCCACTGAATCCAAGTAAAAG 58.994 41.667 0.00 0.00 0.00 2.27
284 285 4.156739 GCTCCACTGAATCCAAGTAAAAGG 59.843 45.833 0.00 0.00 0.00 3.11
285 286 5.560724 CTCCACTGAATCCAAGTAAAAGGA 58.439 41.667 0.00 0.00 38.50 3.36
286 287 5.947663 TCCACTGAATCCAAGTAAAAGGAA 58.052 37.500 0.00 0.00 37.48 3.36
287 288 5.768164 TCCACTGAATCCAAGTAAAAGGAAC 59.232 40.000 0.00 0.00 37.48 3.62
288 289 5.048013 CCACTGAATCCAAGTAAAAGGAACC 60.048 44.000 0.00 0.00 37.48 3.62
289 290 5.534654 CACTGAATCCAAGTAAAAGGAACCA 59.465 40.000 0.00 0.00 37.48 3.67
290 291 5.535030 ACTGAATCCAAGTAAAAGGAACCAC 59.465 40.000 0.00 0.00 37.48 4.16
291 292 4.830600 TGAATCCAAGTAAAAGGAACCACC 59.169 41.667 0.00 0.00 37.48 4.61
308 309 5.405935 ACCACCTTCCATATTTTCTTTGC 57.594 39.130 0.00 0.00 0.00 3.68
309 310 4.837860 ACCACCTTCCATATTTTCTTTGCA 59.162 37.500 0.00 0.00 0.00 4.08
310 311 5.306678 ACCACCTTCCATATTTTCTTTGCAA 59.693 36.000 0.00 0.00 0.00 4.08
311 312 6.183361 ACCACCTTCCATATTTTCTTTGCAAA 60.183 34.615 12.14 12.14 0.00 3.68
312 313 6.880529 CCACCTTCCATATTTTCTTTGCAAAT 59.119 34.615 13.23 0.00 0.00 2.32
313 314 7.391275 CCACCTTCCATATTTTCTTTGCAAATT 59.609 33.333 13.23 0.00 0.00 1.82
314 315 8.445493 CACCTTCCATATTTTCTTTGCAAATTC 58.555 33.333 13.23 0.00 0.00 2.17
315 316 8.377799 ACCTTCCATATTTTCTTTGCAAATTCT 58.622 29.630 13.23 0.00 0.00 2.40
316 317 8.876790 CCTTCCATATTTTCTTTGCAAATTCTC 58.123 33.333 13.23 0.00 0.00 2.87
317 318 9.426837 CTTCCATATTTTCTTTGCAAATTCTCA 57.573 29.630 13.23 0.00 0.00 3.27
318 319 9.775854 TTCCATATTTTCTTTGCAAATTCTCAA 57.224 25.926 13.23 2.42 0.00 3.02
319 320 9.947433 TCCATATTTTCTTTGCAAATTCTCAAT 57.053 25.926 13.23 9.31 0.00 2.57
340 341 9.893305 CTCAATTTACTTTTACCTACAACTTGG 57.107 33.333 0.00 0.00 0.00 3.61
341 342 9.629878 TCAATTTACTTTTACCTACAACTTGGA 57.370 29.630 0.00 0.00 0.00 3.53
346 347 6.745116 ACTTTTACCTACAACTTGGATTTGC 58.255 36.000 0.00 0.00 0.00 3.68
347 348 5.715434 TTTACCTACAACTTGGATTTGCC 57.285 39.130 0.00 0.00 37.10 4.52
348 349 3.525800 ACCTACAACTTGGATTTGCCT 57.474 42.857 0.00 0.00 37.63 4.75
349 350 3.844640 ACCTACAACTTGGATTTGCCTT 58.155 40.909 0.00 0.00 37.63 4.35
350 351 4.223144 ACCTACAACTTGGATTTGCCTTT 58.777 39.130 0.00 0.00 37.63 3.11
351 352 4.039124 ACCTACAACTTGGATTTGCCTTTG 59.961 41.667 0.00 0.00 37.63 2.77
352 353 4.039124 CCTACAACTTGGATTTGCCTTTGT 59.961 41.667 0.00 0.00 38.00 2.83
353 354 4.486125 ACAACTTGGATTTGCCTTTGTT 57.514 36.364 0.00 0.00 33.69 2.83
354 355 4.842574 ACAACTTGGATTTGCCTTTGTTT 58.157 34.783 0.00 0.00 33.69 2.83
355 356 5.252547 ACAACTTGGATTTGCCTTTGTTTT 58.747 33.333 0.00 0.00 33.69 2.43
356 357 5.709631 ACAACTTGGATTTGCCTTTGTTTTT 59.290 32.000 0.00 0.00 33.69 1.94
357 358 6.128035 ACAACTTGGATTTGCCTTTGTTTTTC 60.128 34.615 0.00 0.00 33.69 2.29
358 359 5.495640 ACTTGGATTTGCCTTTGTTTTTCA 58.504 33.333 0.00 0.00 37.63 2.69
359 360 5.585844 ACTTGGATTTGCCTTTGTTTTTCAG 59.414 36.000 0.00 0.00 37.63 3.02
360 361 3.876320 TGGATTTGCCTTTGTTTTTCAGC 59.124 39.130 0.00 0.00 37.63 4.26
361 362 4.129380 GGATTTGCCTTTGTTTTTCAGCT 58.871 39.130 0.00 0.00 0.00 4.24
362 363 4.576053 GGATTTGCCTTTGTTTTTCAGCTT 59.424 37.500 0.00 0.00 0.00 3.74
363 364 5.066375 GGATTTGCCTTTGTTTTTCAGCTTT 59.934 36.000 0.00 0.00 0.00 3.51
364 365 6.259829 GGATTTGCCTTTGTTTTTCAGCTTTA 59.740 34.615 0.00 0.00 0.00 1.85
365 366 6.415798 TTTGCCTTTGTTTTTCAGCTTTAC 57.584 33.333 0.00 0.00 0.00 2.01
366 367 5.078411 TGCCTTTGTTTTTCAGCTTTACA 57.922 34.783 0.00 0.00 0.00 2.41
367 368 5.482908 TGCCTTTGTTTTTCAGCTTTACAA 58.517 33.333 0.00 0.00 0.00 2.41
368 369 5.934625 TGCCTTTGTTTTTCAGCTTTACAAA 59.065 32.000 0.00 0.00 36.63 2.83
369 370 6.597280 TGCCTTTGTTTTTCAGCTTTACAAAT 59.403 30.769 0.00 0.00 37.86 2.32
370 371 7.766278 TGCCTTTGTTTTTCAGCTTTACAAATA 59.234 29.630 0.00 0.00 37.86 1.40
371 372 8.608317 GCCTTTGTTTTTCAGCTTTACAAATAA 58.392 29.630 0.00 0.00 37.86 1.40
403 404 7.051000 AGATGGACTAAACTTATCTTTCCAGC 58.949 38.462 0.00 0.00 38.15 4.85
404 405 6.374417 TGGACTAAACTTATCTTTCCAGCT 57.626 37.500 0.00 0.00 0.00 4.24
405 406 6.407202 TGGACTAAACTTATCTTTCCAGCTC 58.593 40.000 0.00 0.00 0.00 4.09
406 407 6.013725 TGGACTAAACTTATCTTTCCAGCTCA 60.014 38.462 0.00 0.00 0.00 4.26
407 408 6.879458 GGACTAAACTTATCTTTCCAGCTCAA 59.121 38.462 0.00 0.00 0.00 3.02
408 409 7.554476 GGACTAAACTTATCTTTCCAGCTCAAT 59.446 37.037 0.00 0.00 0.00 2.57
409 410 8.870075 ACTAAACTTATCTTTCCAGCTCAATT 57.130 30.769 0.00 0.00 0.00 2.32
410 411 9.301897 ACTAAACTTATCTTTCCAGCTCAATTT 57.698 29.630 0.00 0.00 0.00 1.82
413 414 9.481340 AAACTTATCTTTCCAGCTCAATTTTTC 57.519 29.630 0.00 0.00 0.00 2.29
414 415 7.606349 ACTTATCTTTCCAGCTCAATTTTTCC 58.394 34.615 0.00 0.00 0.00 3.13
415 416 7.452813 ACTTATCTTTCCAGCTCAATTTTTCCT 59.547 33.333 0.00 0.00 0.00 3.36
416 417 6.676990 ATCTTTCCAGCTCAATTTTTCCTT 57.323 33.333 0.00 0.00 0.00 3.36
417 418 7.781324 ATCTTTCCAGCTCAATTTTTCCTTA 57.219 32.000 0.00 0.00 0.00 2.69
418 419 7.595819 TCTTTCCAGCTCAATTTTTCCTTAA 57.404 32.000 0.00 0.00 0.00 1.85
419 420 8.193953 TCTTTCCAGCTCAATTTTTCCTTAAT 57.806 30.769 0.00 0.00 0.00 1.40
420 421 8.650490 TCTTTCCAGCTCAATTTTTCCTTAATT 58.350 29.630 0.00 0.00 0.00 1.40
421 422 9.276590 CTTTCCAGCTCAATTTTTCCTTAATTT 57.723 29.630 0.00 0.00 0.00 1.82
422 423 9.625747 TTTCCAGCTCAATTTTTCCTTAATTTT 57.374 25.926 0.00 0.00 0.00 1.82
423 424 8.606040 TCCAGCTCAATTTTTCCTTAATTTTG 57.394 30.769 0.00 0.00 0.00 2.44
424 425 8.210265 TCCAGCTCAATTTTTCCTTAATTTTGT 58.790 29.630 0.00 0.00 0.00 2.83
425 426 9.487790 CCAGCTCAATTTTTCCTTAATTTTGTA 57.512 29.630 0.00 0.00 0.00 2.41
438 439 8.821894 TCCTTAATTTTGTACAATGTTTTGTGC 58.178 29.630 9.56 1.23 45.56 4.57
451 452 9.872721 ACAATGTTTTGTGCATTCATATATGAA 57.127 25.926 26.24 26.24 45.70 2.57
530 531 9.638176 ATTAGAAATAAAGGAGTGATTCATGCT 57.362 29.630 0.00 0.00 0.00 3.79
531 532 7.565323 AGAAATAAAGGAGTGATTCATGCTC 57.435 36.000 0.00 0.00 0.00 4.26
532 533 5.998454 AATAAAGGAGTGATTCATGCTCG 57.002 39.130 0.00 0.00 0.00 5.03
533 534 3.616956 AAAGGAGTGATTCATGCTCGA 57.383 42.857 0.00 0.00 0.00 4.04
534 535 3.616956 AAGGAGTGATTCATGCTCGAA 57.383 42.857 0.00 0.00 0.00 3.71
535 536 3.616956 AGGAGTGATTCATGCTCGAAA 57.383 42.857 0.00 0.00 0.00 3.46
536 537 3.942829 AGGAGTGATTCATGCTCGAAAA 58.057 40.909 0.00 0.00 0.00 2.29
537 538 4.326826 AGGAGTGATTCATGCTCGAAAAA 58.673 39.130 0.00 0.00 0.00 1.94
563 564 9.593134 AACTGTATTTGCTCAAATTTACAAACA 57.407 25.926 12.40 8.91 40.99 2.83
564 565 9.030301 ACTGTATTTGCTCAAATTTACAAACAC 57.970 29.630 12.40 12.23 40.99 3.32
565 566 8.932945 TGTATTTGCTCAAATTTACAAACACA 57.067 26.923 15.20 15.20 37.16 3.72
566 567 9.539825 TGTATTTGCTCAAATTTACAAACACAT 57.460 25.926 15.20 5.62 35.25 3.21
567 568 9.796062 GTATTTGCTCAAATTTACAAACACATG 57.204 29.630 12.40 0.00 40.99 3.21
568 569 5.903764 TGCTCAAATTTACAAACACATGC 57.096 34.783 0.00 0.00 0.00 4.06
569 570 4.749099 TGCTCAAATTTACAAACACATGCC 59.251 37.500 0.00 0.00 0.00 4.40
570 571 4.143347 GCTCAAATTTACAAACACATGCCG 60.143 41.667 0.00 0.00 0.00 5.69
571 572 4.938080 TCAAATTTACAAACACATGCCGT 58.062 34.783 0.00 0.00 0.00 5.68
572 573 4.979197 TCAAATTTACAAACACATGCCGTC 59.021 37.500 0.00 0.00 0.00 4.79
573 574 4.576216 AATTTACAAACACATGCCGTCA 57.424 36.364 0.00 0.00 0.00 4.35
574 575 3.341857 TTTACAAACACATGCCGTCAC 57.658 42.857 0.00 0.00 0.00 3.67
575 576 1.954927 TACAAACACATGCCGTCACA 58.045 45.000 0.00 0.00 0.00 3.58
576 577 1.317613 ACAAACACATGCCGTCACAT 58.682 45.000 0.00 0.00 0.00 3.21
577 578 1.680735 ACAAACACATGCCGTCACATT 59.319 42.857 0.00 0.00 0.00 2.71
578 579 2.052891 CAAACACATGCCGTCACATTG 58.947 47.619 0.00 0.00 0.00 2.82
579 580 1.317613 AACACATGCCGTCACATTGT 58.682 45.000 0.00 0.00 0.00 2.71
580 581 2.177394 ACACATGCCGTCACATTGTA 57.823 45.000 0.00 0.00 0.00 2.41
581 582 2.499197 ACACATGCCGTCACATTGTAA 58.501 42.857 0.00 0.00 0.00 2.41
582 583 2.483877 ACACATGCCGTCACATTGTAAG 59.516 45.455 0.00 0.00 0.00 2.34
583 584 2.083774 ACATGCCGTCACATTGTAAGG 58.916 47.619 0.00 0.00 0.00 2.69
584 585 2.290008 ACATGCCGTCACATTGTAAGGA 60.290 45.455 8.11 0.00 0.00 3.36
585 586 2.093306 TGCCGTCACATTGTAAGGAG 57.907 50.000 8.11 0.00 0.00 3.69
586 587 1.338674 TGCCGTCACATTGTAAGGAGG 60.339 52.381 8.11 0.10 0.00 4.30
587 588 2.012051 GCCGTCACATTGTAAGGAGGG 61.012 57.143 9.02 9.02 38.12 4.30
588 589 1.553248 CCGTCACATTGTAAGGAGGGA 59.447 52.381 8.05 0.00 37.46 4.20
589 590 2.170607 CCGTCACATTGTAAGGAGGGAT 59.829 50.000 8.05 0.00 37.46 3.85
590 591 3.370527 CCGTCACATTGTAAGGAGGGATT 60.371 47.826 8.05 0.00 37.46 3.01
591 592 3.871594 CGTCACATTGTAAGGAGGGATTC 59.128 47.826 0.00 0.00 0.00 2.52
592 593 4.383118 CGTCACATTGTAAGGAGGGATTCT 60.383 45.833 0.00 0.00 0.00 2.40
593 594 5.119694 GTCACATTGTAAGGAGGGATTCTC 58.880 45.833 0.00 0.00 41.71 2.87
594 595 4.782691 TCACATTGTAAGGAGGGATTCTCA 59.217 41.667 0.00 0.00 44.19 3.27
595 596 5.429762 TCACATTGTAAGGAGGGATTCTCAT 59.570 40.000 0.00 0.00 44.19 2.90
596 597 6.615316 TCACATTGTAAGGAGGGATTCTCATA 59.385 38.462 0.00 0.00 44.19 2.15
597 598 6.708054 CACATTGTAAGGAGGGATTCTCATAC 59.292 42.308 0.00 0.00 44.19 2.39
598 599 5.888982 TTGTAAGGAGGGATTCTCATACC 57.111 43.478 0.00 0.00 44.19 2.73
599 600 4.890988 TGTAAGGAGGGATTCTCATACCA 58.109 43.478 0.00 0.00 44.19 3.25
600 601 4.901849 TGTAAGGAGGGATTCTCATACCAG 59.098 45.833 0.00 0.00 44.19 4.00
601 602 2.983296 AGGAGGGATTCTCATACCAGG 58.017 52.381 0.00 0.00 44.19 4.45
602 603 2.251338 AGGAGGGATTCTCATACCAGGT 59.749 50.000 0.00 0.00 44.19 4.00
603 604 2.370189 GGAGGGATTCTCATACCAGGTG 59.630 54.545 0.76 0.00 44.19 4.00
604 605 3.309296 GAGGGATTCTCATACCAGGTGA 58.691 50.000 0.76 0.00 42.02 4.02
605 606 3.041946 AGGGATTCTCATACCAGGTGAC 58.958 50.000 0.76 0.00 35.41 3.67
606 607 2.224066 GGGATTCTCATACCAGGTGACG 60.224 54.545 0.76 0.00 32.59 4.35
607 608 2.224066 GGATTCTCATACCAGGTGACGG 60.224 54.545 0.76 0.00 0.00 4.79
608 609 1.933021 TTCTCATACCAGGTGACGGT 58.067 50.000 0.76 0.00 39.82 4.83
609 610 1.182667 TCTCATACCAGGTGACGGTG 58.817 55.000 0.76 0.00 37.69 4.94
610 611 0.175760 CTCATACCAGGTGACGGTGG 59.824 60.000 0.76 1.38 37.69 4.61
611 612 1.220749 CATACCAGGTGACGGTGGG 59.779 63.158 0.76 0.00 38.25 4.61
612 613 2.666098 ATACCAGGTGACGGTGGGC 61.666 63.158 0.76 0.00 38.25 5.36
641 642 4.232310 GCTTGAGCTGTGGGATCC 57.768 61.111 1.92 1.92 38.21 3.36
642 643 1.300963 GCTTGAGCTGTGGGATCCA 59.699 57.895 15.23 0.00 38.21 3.41
653 654 1.580059 TGGGATCCACACTACCTTCC 58.420 55.000 15.23 0.00 0.00 3.46
654 655 1.080498 TGGGATCCACACTACCTTCCT 59.920 52.381 15.23 0.00 0.00 3.36
655 656 1.763545 GGGATCCACACTACCTTCCTC 59.236 57.143 15.23 0.00 0.00 3.71
656 657 2.627217 GGGATCCACACTACCTTCCTCT 60.627 54.545 15.23 0.00 0.00 3.69
657 658 3.108376 GGATCCACACTACCTTCCTCTT 58.892 50.000 6.95 0.00 0.00 2.85
658 659 3.118592 GGATCCACACTACCTTCCTCTTG 60.119 52.174 6.95 0.00 0.00 3.02
659 660 2.257207 TCCACACTACCTTCCTCTTGG 58.743 52.381 0.00 0.00 0.00 3.61
660 661 1.978580 CCACACTACCTTCCTCTTGGT 59.021 52.381 0.00 0.00 40.12 3.67
661 662 2.028020 CCACACTACCTTCCTCTTGGTC 60.028 54.545 0.00 0.00 37.74 4.02
662 663 2.632996 CACACTACCTTCCTCTTGGTCA 59.367 50.000 0.00 0.00 37.74 4.02
663 664 3.261897 CACACTACCTTCCTCTTGGTCAT 59.738 47.826 0.00 0.00 37.74 3.06
675 676 9.342308 CTTCCTCTTGGTCATAGCATATTTTTA 57.658 33.333 0.00 0.00 34.23 1.52
697 698 5.590104 AGTTTGAAAAACACAGTGCAAAC 57.410 34.783 18.71 18.71 43.05 2.93
698 699 5.053145 AGTTTGAAAAACACAGTGCAAACA 58.947 33.333 24.08 9.14 44.34 2.83
699 700 5.700373 AGTTTGAAAAACACAGTGCAAACAT 59.300 32.000 24.08 13.35 44.34 2.71
745 748 3.287222 GCCTACCCTTTATGAATGCACA 58.713 45.455 0.00 0.00 0.00 4.57
748 751 5.192927 CCTACCCTTTATGAATGCACAGAA 58.807 41.667 0.00 0.00 0.00 3.02
749 752 5.652014 CCTACCCTTTATGAATGCACAGAAA 59.348 40.000 0.00 0.00 31.70 2.52
753 756 4.853196 CCTTTATGAATGCACAGAAACACG 59.147 41.667 0.00 0.00 29.90 4.49
754 757 2.336554 ATGAATGCACAGAAACACGC 57.663 45.000 0.00 0.00 0.00 5.34
755 758 0.041400 TGAATGCACAGAAACACGCG 60.041 50.000 3.53 3.53 0.00 6.01
756 759 0.041312 GAATGCACAGAAACACGCGT 60.041 50.000 5.58 5.58 0.00 6.01
758 761 0.880278 ATGCACAGAAACACGCGTCT 60.880 50.000 9.86 0.00 0.00 4.18
766 769 2.035576 AGAAACACGCGTCTTACCTTCT 59.964 45.455 9.86 8.38 0.00 2.85
772 775 2.677337 ACGCGTCTTACCTTCTAGAGAC 59.323 50.000 5.58 0.00 36.14 3.36
777 780 3.313249 GTCTTACCTTCTAGAGACGGAGC 59.687 52.174 8.94 0.00 36.98 4.70
778 781 3.200385 TCTTACCTTCTAGAGACGGAGCT 59.800 47.826 8.94 0.00 36.98 4.09
780 783 0.383949 CCTTCTAGAGACGGAGCTGC 59.616 60.000 0.00 0.00 35.67 5.25
794 797 4.697352 ACGGAGCTGCCATATTTTGATATC 59.303 41.667 0.00 0.00 35.94 1.63
795 798 4.940046 CGGAGCTGCCATATTTTGATATCT 59.060 41.667 3.98 0.00 35.94 1.98
796 799 5.413833 CGGAGCTGCCATATTTTGATATCTT 59.586 40.000 3.98 0.00 35.94 2.40
797 800 6.072286 CGGAGCTGCCATATTTTGATATCTTT 60.072 38.462 3.98 0.00 35.94 2.52
798 801 7.522725 CGGAGCTGCCATATTTTGATATCTTTT 60.523 37.037 3.98 0.00 35.94 2.27
806 809 9.173939 CCATATTTTGATATCTTTTGAAGTCGC 57.826 33.333 3.98 0.00 0.00 5.19
808 811 6.817765 TTTTGATATCTTTTGAAGTCGCCT 57.182 33.333 3.98 0.00 0.00 5.52
810 813 5.084818 TGATATCTTTTGAAGTCGCCTCA 57.915 39.130 3.98 0.00 0.00 3.86
811 814 4.870426 TGATATCTTTTGAAGTCGCCTCAC 59.130 41.667 3.98 0.00 0.00 3.51
819 822 1.582502 GAAGTCGCCTCACGTAATTCG 59.417 52.381 0.00 0.00 44.19 3.34
835 838 2.260247 TCGTAGTCGAAGGGTGTGG 58.740 57.895 0.00 0.00 43.34 4.17
836 839 0.538057 TCGTAGTCGAAGGGTGTGGT 60.538 55.000 0.00 0.00 43.34 4.16
837 840 0.388134 CGTAGTCGAAGGGTGTGGTG 60.388 60.000 0.00 0.00 39.71 4.17
838 841 0.677842 GTAGTCGAAGGGTGTGGTGT 59.322 55.000 0.00 0.00 0.00 4.16
839 842 0.677288 TAGTCGAAGGGTGTGGTGTG 59.323 55.000 0.00 0.00 0.00 3.82
844 847 1.001520 CGAAGGGTGTGGTGTGTCATA 59.998 52.381 0.00 0.00 0.00 2.15
858 865 7.598278 TGGTGTGTCATACCATTGAAATTAAC 58.402 34.615 16.85 0.00 43.00 2.01
884 891 9.329913 CGATGTCGAAAAGATTAAAACAAATCT 57.670 29.630 0.00 0.00 43.48 2.40
953 960 1.535462 GGACAGATTTTCACCACACCG 59.465 52.381 0.00 0.00 0.00 4.94
989 1008 4.782019 TGTTCATTTATTCTGGTGCACC 57.218 40.909 29.67 29.67 0.00 5.01
1083 1102 1.270571 GCATCGAAATCTCCTCCCTCC 60.271 57.143 0.00 0.00 0.00 4.30
1084 1103 1.346068 CATCGAAATCTCCTCCCTCCC 59.654 57.143 0.00 0.00 0.00 4.30
1085 1104 0.755698 TCGAAATCTCCTCCCTCCCG 60.756 60.000 0.00 0.00 0.00 5.14
1086 1105 1.043673 CGAAATCTCCTCCCTCCCGT 61.044 60.000 0.00 0.00 0.00 5.28
1187 1206 1.215647 CCACAGCGTACTCTGGTCC 59.784 63.158 16.80 0.00 38.36 4.46
1288 1307 1.401905 CTTTTCTTATCCCACAGGCGC 59.598 52.381 0.00 0.00 0.00 6.53
1342 1361 1.888436 TTCTCGGCCCTGCTGTACAG 61.888 60.000 18.93 18.93 46.77 2.74
1571 1595 6.599445 AGTCAGGGATTTGGAATCAATCTAG 58.401 40.000 3.39 0.00 32.28 2.43
1573 1597 5.103982 TCAGGGATTTGGAATCAATCTAGCA 60.104 40.000 3.39 0.00 32.28 3.49
1574 1598 5.009410 CAGGGATTTGGAATCAATCTAGCAC 59.991 44.000 3.39 0.00 32.28 4.40
1575 1599 4.279420 GGGATTTGGAATCAATCTAGCACC 59.721 45.833 3.39 0.00 32.28 5.01
1576 1600 4.889409 GGATTTGGAATCAATCTAGCACCA 59.111 41.667 3.39 0.00 32.28 4.17
1577 1601 5.537674 GGATTTGGAATCAATCTAGCACCAT 59.462 40.000 3.39 0.00 32.28 3.55
1578 1602 5.840243 TTTGGAATCAATCTAGCACCATG 57.160 39.130 0.00 0.00 32.28 3.66
1579 1603 4.508551 TGGAATCAATCTAGCACCATGT 57.491 40.909 0.00 0.00 0.00 3.21
1580 1604 5.628797 TGGAATCAATCTAGCACCATGTA 57.371 39.130 0.00 0.00 0.00 2.29
1581 1605 6.191657 TGGAATCAATCTAGCACCATGTAT 57.808 37.500 0.00 0.00 0.00 2.29
1582 1606 5.999600 TGGAATCAATCTAGCACCATGTATG 59.000 40.000 0.00 0.00 0.00 2.39
1583 1607 6.000219 GGAATCAATCTAGCACCATGTATGT 59.000 40.000 0.00 0.00 0.00 2.29
1584 1608 7.161404 GGAATCAATCTAGCACCATGTATGTA 58.839 38.462 0.00 0.00 0.00 2.29
1585 1609 7.118390 GGAATCAATCTAGCACCATGTATGTAC 59.882 40.741 0.00 0.00 0.00 2.90
1621 1645 0.443869 CGAACCAGAGCGTTGAATGG 59.556 55.000 0.00 0.00 38.83 3.16
1624 1648 1.377725 CCAGAGCGTTGAATGGCCT 60.378 57.895 3.32 0.00 0.00 5.19
1627 1651 1.377202 GAGCGTTGAATGGCCTGGA 60.377 57.895 3.32 0.00 0.00 3.86
1873 1910 2.290641 CACAGGTAACAAGTGCTGGAAC 59.709 50.000 0.00 0.00 37.90 3.62
1874 1911 2.092646 ACAGGTAACAAGTGCTGGAACA 60.093 45.455 0.00 0.00 41.41 3.18
1885 1922 4.008330 AGTGCTGGAACATCATCTTCTTG 58.992 43.478 0.00 0.00 36.64 3.02
1893 1931 3.716431 ACATCATCTTCTTGCCCCATTT 58.284 40.909 0.00 0.00 0.00 2.32
1899 1937 1.276138 CTTCTTGCCCCATTTCAACCC 59.724 52.381 0.00 0.00 0.00 4.11
1903 1941 2.645192 GCCCCATTTCAACCCGTGG 61.645 63.158 0.00 0.00 0.00 4.94
1904 1942 1.075836 CCCCATTTCAACCCGTGGA 59.924 57.895 0.00 0.00 33.53 4.02
1908 1946 1.165270 CATTTCAACCCGTGGAGTCC 58.835 55.000 0.73 0.73 0.00 3.85
2028 2126 2.369629 CGTGGTACGTGCAGTTCCG 61.370 63.158 5.86 0.00 42.51 4.30
2221 2326 6.136541 AGAACACTTGAACTTGAATGAACC 57.863 37.500 0.00 0.00 0.00 3.62
2271 2377 2.223089 GCTTTGGTTTGCTTGCTTGTTG 60.223 45.455 0.00 0.00 0.00 3.33
2280 2386 0.037975 CTTGCTTGTTGGGGTGATGC 60.038 55.000 0.00 0.00 0.00 3.91
2305 2411 2.031012 CAGGTCACGCAGCAAGGA 59.969 61.111 0.00 0.00 0.00 3.36
2317 2423 1.803519 GCAAGGAGAGCACGAGTCG 60.804 63.158 11.85 11.85 0.00 4.18
2356 2462 4.043100 GGGTTCGGGAAGTGGGGG 62.043 72.222 0.00 0.00 0.00 5.40
2452 2558 0.830444 AGGACCTGTTCGTGCCTGTA 60.830 55.000 0.00 0.00 0.00 2.74
2623 2729 2.484928 CGAGAGCGAGAGATGGGCA 61.485 63.158 0.00 0.00 40.82 5.36
2624 2730 1.363443 GAGAGCGAGAGATGGGCAG 59.637 63.158 0.00 0.00 0.00 4.85
2626 2732 0.975040 AGAGCGAGAGATGGGCAGTT 60.975 55.000 0.00 0.00 0.00 3.16
2627 2733 0.747255 GAGCGAGAGATGGGCAGTTA 59.253 55.000 0.00 0.00 0.00 2.24
2628 2734 0.749649 AGCGAGAGATGGGCAGTTAG 59.250 55.000 0.00 0.00 0.00 2.34
2652 2758 8.980481 AGTAGGATTTCGAATAAATTCACCAT 57.020 30.769 0.00 0.00 36.61 3.55
2653 2759 9.408648 AGTAGGATTTCGAATAAATTCACCATT 57.591 29.630 0.00 0.00 36.61 3.16
2706 2812 4.652881 CCCGGGGAGTAAAAGTAGACTATT 59.347 45.833 14.71 0.00 0.00 1.73
2739 2851 0.456312 GCACTTCGAGGTGTACTCCG 60.456 60.000 26.07 2.25 43.57 4.63
2743 2855 0.250858 TTCGAGGTGTACTCCGGTGA 60.251 55.000 11.17 5.26 43.57 4.02
2748 2860 0.669625 GGTGTACTCCGGTGACAAGC 60.670 60.000 11.17 0.88 0.00 4.01
2841 2958 1.306654 TGCCCTAGGTACCCCTGTG 60.307 63.158 8.74 0.00 42.67 3.66
3058 3180 1.269051 CCACCTTTTTGTGTTCTCGGC 60.269 52.381 0.00 0.00 34.35 5.54
3080 3202 8.029522 TCGGCTGCTTTATATACATCTAAGAAG 58.970 37.037 0.00 0.00 0.00 2.85
3091 3235 3.589288 ACATCTAAGAAGGGGTCTTTGCT 59.411 43.478 0.00 0.00 44.64 3.91
3100 3244 0.984995 GGGTCTTTGCTGTAGGGACT 59.015 55.000 0.00 0.00 46.37 3.85
3168 3315 8.691661 AAACTCTCTAAATTAACCACACACAT 57.308 30.769 0.00 0.00 0.00 3.21
3306 3697 9.840427 AACAAACGACATAAATGGATAAAGAAG 57.160 29.630 0.00 0.00 0.00 2.85
3321 3712 2.822707 AGAAGCCATCCTGCATTTCT 57.177 45.000 0.00 0.00 0.00 2.52
3338 3729 6.769608 CATTTCTTGCAAAACCCTTAAGTC 57.230 37.500 0.00 0.00 0.00 3.01
3339 3730 4.929819 TTCTTGCAAAACCCTTAAGTCC 57.070 40.909 0.00 0.00 0.00 3.85
3340 3731 4.178956 TCTTGCAAAACCCTTAAGTCCT 57.821 40.909 0.00 0.00 0.00 3.85
3341 3732 3.888930 TCTTGCAAAACCCTTAAGTCCTG 59.111 43.478 0.00 0.00 0.00 3.86
3342 3733 1.960689 TGCAAAACCCTTAAGTCCTGC 59.039 47.619 0.97 3.92 0.00 4.85
3343 3734 2.239400 GCAAAACCCTTAAGTCCTGCT 58.761 47.619 0.97 0.00 0.00 4.24
3344 3735 2.628178 GCAAAACCCTTAAGTCCTGCTT 59.372 45.455 0.97 0.00 41.05 3.91
3345 3736 3.069586 GCAAAACCCTTAAGTCCTGCTTT 59.930 43.478 0.97 0.00 38.57 3.51
3346 3737 4.620982 CAAAACCCTTAAGTCCTGCTTTG 58.379 43.478 0.97 0.00 38.57 2.77
3347 3738 2.586648 ACCCTTAAGTCCTGCTTTGG 57.413 50.000 0.97 0.00 38.57 3.28
3348 3739 1.780919 ACCCTTAAGTCCTGCTTTGGT 59.219 47.619 0.97 0.00 38.57 3.67
3349 3740 2.177016 ACCCTTAAGTCCTGCTTTGGTT 59.823 45.455 0.97 0.00 38.57 3.67
3350 3741 3.230976 CCCTTAAGTCCTGCTTTGGTTT 58.769 45.455 0.97 0.00 38.57 3.27
3351 3742 3.005791 CCCTTAAGTCCTGCTTTGGTTTG 59.994 47.826 0.97 0.00 38.57 2.93
3352 3743 3.636764 CCTTAAGTCCTGCTTTGGTTTGT 59.363 43.478 0.97 0.00 38.57 2.83
3353 3744 4.825085 CCTTAAGTCCTGCTTTGGTTTGTA 59.175 41.667 0.97 0.00 38.57 2.41
3354 3745 5.048713 CCTTAAGTCCTGCTTTGGTTTGTAG 60.049 44.000 0.97 0.00 38.57 2.74
3355 3746 2.863809 AGTCCTGCTTTGGTTTGTAGG 58.136 47.619 0.00 0.00 37.40 3.18
3356 3747 2.441750 AGTCCTGCTTTGGTTTGTAGGA 59.558 45.455 0.00 0.00 41.54 2.94
3357 3748 3.117663 AGTCCTGCTTTGGTTTGTAGGAA 60.118 43.478 1.66 0.00 44.38 3.36
3358 3749 3.826729 GTCCTGCTTTGGTTTGTAGGAAT 59.173 43.478 1.66 0.00 44.38 3.01
3359 3750 4.280929 GTCCTGCTTTGGTTTGTAGGAATT 59.719 41.667 1.66 0.00 44.38 2.17
3360 3751 4.898861 TCCTGCTTTGGTTTGTAGGAATTT 59.101 37.500 0.00 0.00 41.01 1.82
3361 3752 5.010617 TCCTGCTTTGGTTTGTAGGAATTTC 59.989 40.000 0.00 0.00 41.01 2.17
3362 3753 5.221422 CCTGCTTTGGTTTGTAGGAATTTCA 60.221 40.000 0.00 0.00 38.13 2.69
3363 3754 6.418057 TGCTTTGGTTTGTAGGAATTTCAT 57.582 33.333 0.00 0.00 0.00 2.57
3364 3755 7.309744 CCTGCTTTGGTTTGTAGGAATTTCATA 60.310 37.037 0.00 0.00 38.13 2.15
3365 3756 7.601856 TGCTTTGGTTTGTAGGAATTTCATAG 58.398 34.615 0.00 0.00 0.00 2.23
3366 3757 7.035612 GCTTTGGTTTGTAGGAATTTCATAGG 58.964 38.462 0.00 0.00 0.00 2.57
3367 3758 7.093945 GCTTTGGTTTGTAGGAATTTCATAGGA 60.094 37.037 0.00 0.00 0.00 2.94
3368 3759 8.893563 TTTGGTTTGTAGGAATTTCATAGGAT 57.106 30.769 0.00 0.00 0.00 3.24
3369 3760 8.893563 TTGGTTTGTAGGAATTTCATAGGATT 57.106 30.769 0.00 0.00 0.00 3.01
3370 3761 8.893563 TGGTTTGTAGGAATTTCATAGGATTT 57.106 30.769 0.00 0.00 0.00 2.17
3371 3762 9.320295 TGGTTTGTAGGAATTTCATAGGATTTT 57.680 29.630 0.00 0.00 0.00 1.82
3401 3792 9.440773 AAGATAGGATTTGCAAAGGAAATTTTC 57.559 29.630 18.19 7.27 0.00 2.29
3402 3793 8.819845 AGATAGGATTTGCAAAGGAAATTTTCT 58.180 29.630 18.19 5.44 0.00 2.52
3403 3794 9.440773 GATAGGATTTGCAAAGGAAATTTTCTT 57.559 29.630 18.19 5.86 0.00 2.52
3404 3795 9.797642 ATAGGATTTGCAAAGGAAATTTTCTTT 57.202 25.926 17.26 17.26 33.95 2.52
3414 3805 8.523915 AAAGGAAATTTTCTTTGAAGCCATTT 57.476 26.923 21.32 0.00 32.63 2.32
3415 3806 7.500720 AGGAAATTTTCTTTGAAGCCATTTG 57.499 32.000 8.93 0.00 0.00 2.32
3416 3807 6.487668 AGGAAATTTTCTTTGAAGCCATTTGG 59.512 34.615 8.93 0.00 38.53 3.28
3417 3808 6.262944 GGAAATTTTCTTTGAAGCCATTTGGT 59.737 34.615 8.93 0.00 37.57 3.67
3418 3809 7.201812 GGAAATTTTCTTTGAAGCCATTTGGTT 60.202 33.333 8.93 0.00 37.57 3.67
3425 3816 2.706890 GAAGCCATTTGGTTCGTAGGA 58.293 47.619 0.00 0.00 41.23 2.94
3426 3817 2.871096 AGCCATTTGGTTCGTAGGAA 57.129 45.000 0.00 0.00 37.57 3.36
3427 3818 3.366052 AGCCATTTGGTTCGTAGGAAT 57.634 42.857 0.50 0.00 37.57 3.01
3428 3819 3.016736 AGCCATTTGGTTCGTAGGAATG 58.983 45.455 0.50 0.00 37.57 2.67
3429 3820 2.099098 GCCATTTGGTTCGTAGGAATGG 59.901 50.000 9.41 9.41 45.96 3.16
3430 3821 3.616219 CCATTTGGTTCGTAGGAATGGA 58.384 45.455 8.43 0.00 46.06 3.41
3431 3822 4.207165 CCATTTGGTTCGTAGGAATGGAT 58.793 43.478 8.43 0.00 46.06 3.41
3432 3823 4.644685 CCATTTGGTTCGTAGGAATGGATT 59.355 41.667 8.43 0.00 46.06 3.01
3433 3824 5.221048 CCATTTGGTTCGTAGGAATGGATTC 60.221 44.000 8.43 0.00 46.06 2.52
3474 3865 4.925068 GGAATCGATCCTTCACATTTTGG 58.075 43.478 0.00 0.00 45.56 3.28
3475 3866 4.640201 GGAATCGATCCTTCACATTTTGGA 59.360 41.667 0.00 0.00 45.56 3.53
3476 3867 5.220931 GGAATCGATCCTTCACATTTTGGAG 60.221 44.000 0.00 0.00 45.56 3.86
3528 3919 7.765695 GGAAAAATTCCTATCCTATGCATCA 57.234 36.000 0.19 0.00 46.57 3.07
3529 3920 8.181904 GGAAAAATTCCTATCCTATGCATCAA 57.818 34.615 0.19 0.00 46.57 2.57
3530 3921 8.641541 GGAAAAATTCCTATCCTATGCATCAAA 58.358 33.333 0.19 0.00 46.57 2.69
3532 3923 9.991906 AAAAATTCCTATCCTATGCATCAAATG 57.008 29.630 0.19 0.00 0.00 2.32
3533 3924 8.945195 AAATTCCTATCCTATGCATCAAATGA 57.055 30.769 0.19 0.00 0.00 2.57
3534 3925 7.934855 ATTCCTATCCTATGCATCAAATGAC 57.065 36.000 0.19 0.00 0.00 3.06
3535 3926 6.438186 TCCTATCCTATGCATCAAATGACA 57.562 37.500 0.19 0.00 0.00 3.58
3536 3927 7.024345 TCCTATCCTATGCATCAAATGACAT 57.976 36.000 0.19 0.00 33.67 3.06
3537 3928 7.108194 TCCTATCCTATGCATCAAATGACATC 58.892 38.462 0.19 0.00 32.25 3.06
3538 3929 7.037802 TCCTATCCTATGCATCAAATGACATCT 60.038 37.037 0.19 0.00 32.25 2.90
3539 3930 7.280428 CCTATCCTATGCATCAAATGACATCTC 59.720 40.741 0.19 0.00 32.25 2.75
3540 3931 5.311265 TCCTATGCATCAAATGACATCTCC 58.689 41.667 0.19 0.00 32.25 3.71
3541 3932 5.072736 TCCTATGCATCAAATGACATCTCCT 59.927 40.000 0.19 0.00 32.25 3.69
3542 3933 5.768662 CCTATGCATCAAATGACATCTCCTT 59.231 40.000 0.19 0.00 32.25 3.36
3543 3934 5.769484 ATGCATCAAATGACATCTCCTTC 57.231 39.130 0.00 0.00 0.00 3.46
3544 3935 4.851843 TGCATCAAATGACATCTCCTTCT 58.148 39.130 0.00 0.00 0.00 2.85
3545 3936 4.880120 TGCATCAAATGACATCTCCTTCTC 59.120 41.667 0.00 0.00 0.00 2.87
3546 3937 5.124645 GCATCAAATGACATCTCCTTCTCT 58.875 41.667 0.00 0.00 0.00 3.10
3547 3938 6.126968 TGCATCAAATGACATCTCCTTCTCTA 60.127 38.462 0.00 0.00 0.00 2.43
3548 3939 6.935771 GCATCAAATGACATCTCCTTCTCTAT 59.064 38.462 0.00 0.00 0.00 1.98
3549 3940 8.093307 GCATCAAATGACATCTCCTTCTCTATA 58.907 37.037 0.00 0.00 0.00 1.31
3550 3941 9.642327 CATCAAATGACATCTCCTTCTCTATAG 57.358 37.037 0.00 0.00 0.00 1.31
3551 3942 8.187913 TCAAATGACATCTCCTTCTCTATAGG 57.812 38.462 0.00 0.00 0.00 2.57
3552 3943 8.007153 TCAAATGACATCTCCTTCTCTATAGGA 58.993 37.037 0.00 0.00 39.46 2.94
3553 3944 8.646004 CAAATGACATCTCCTTCTCTATAGGAA 58.354 37.037 0.00 2.11 41.13 3.36
3554 3945 8.971032 AATGACATCTCCTTCTCTATAGGAAT 57.029 34.615 0.00 0.00 41.13 3.01
3555 3946 8.971032 ATGACATCTCCTTCTCTATAGGAATT 57.029 34.615 0.00 0.00 41.13 2.17
3556 3947 8.187913 TGACATCTCCTTCTCTATAGGAATTG 57.812 38.462 0.00 0.00 41.13 2.32
3557 3948 8.007153 TGACATCTCCTTCTCTATAGGAATTGA 58.993 37.037 0.00 2.70 41.13 2.57
3558 3949 8.421249 ACATCTCCTTCTCTATAGGAATTGAG 57.579 38.462 0.00 10.50 41.13 3.02
3559 3950 8.231007 ACATCTCCTTCTCTATAGGAATTGAGA 58.769 37.037 20.47 20.47 41.13 3.27
3560 3951 9.258629 CATCTCCTTCTCTATAGGAATTGAGAT 57.741 37.037 21.79 21.79 41.55 2.75
3561 3952 8.648698 TCTCCTTCTCTATAGGAATTGAGATG 57.351 38.462 17.69 9.33 41.55 2.90
3562 3953 7.178274 TCTCCTTCTCTATAGGAATTGAGATGC 59.822 40.741 17.69 0.00 41.55 3.91
3563 3954 6.784473 TCCTTCTCTATAGGAATTGAGATGCA 59.216 38.462 0.00 0.00 41.55 3.96
3564 3955 7.457218 TCCTTCTCTATAGGAATTGAGATGCAT 59.543 37.037 0.00 0.00 41.55 3.96
3565 3956 7.549842 CCTTCTCTATAGGAATTGAGATGCATG 59.450 40.741 2.46 0.00 41.55 4.06
3566 3957 7.550597 TCTCTATAGGAATTGAGATGCATGT 57.449 36.000 2.46 0.00 38.53 3.21
3567 3958 7.609960 TCTCTATAGGAATTGAGATGCATGTC 58.390 38.462 16.63 16.63 38.53 3.06
3568 3959 7.234166 TCTCTATAGGAATTGAGATGCATGTCA 59.766 37.037 21.70 21.70 38.53 3.58
3569 3960 7.914859 TCTATAGGAATTGAGATGCATGTCAT 58.085 34.615 25.41 13.07 38.32 3.06
3582 3973 6.862711 ATGCATGTCATCTCACTTTCTATG 57.137 37.500 0.00 0.00 0.00 2.23
3583 3974 5.981174 TGCATGTCATCTCACTTTCTATGA 58.019 37.500 0.00 0.00 0.00 2.15
3584 3975 6.589135 TGCATGTCATCTCACTTTCTATGAT 58.411 36.000 0.00 0.00 31.49 2.45
3585 3976 7.052248 TGCATGTCATCTCACTTTCTATGATT 58.948 34.615 0.00 0.00 31.49 2.57
3586 3977 7.555195 TGCATGTCATCTCACTTTCTATGATTT 59.445 33.333 0.00 0.00 31.49 2.17
3587 3978 8.404000 GCATGTCATCTCACTTTCTATGATTTT 58.596 33.333 0.00 0.00 31.49 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.173562 GGTAAGTGAATGGTGTGTAATTGTACA 59.826 37.037 0.00 0.00 37.92 2.90
34 35 7.361457 GGGTAAGTGAATGGTGTGTAATTGTAC 60.361 40.741 0.00 0.00 0.00 2.90
35 36 6.655848 GGGTAAGTGAATGGTGTGTAATTGTA 59.344 38.462 0.00 0.00 0.00 2.41
36 37 5.475564 GGGTAAGTGAATGGTGTGTAATTGT 59.524 40.000 0.00 0.00 0.00 2.71
37 38 5.105917 GGGGTAAGTGAATGGTGTGTAATTG 60.106 44.000 0.00 0.00 0.00 2.32
38 39 5.014202 GGGGTAAGTGAATGGTGTGTAATT 58.986 41.667 0.00 0.00 0.00 1.40
39 40 4.291249 AGGGGTAAGTGAATGGTGTGTAAT 59.709 41.667 0.00 0.00 0.00 1.89
40 41 3.653836 AGGGGTAAGTGAATGGTGTGTAA 59.346 43.478 0.00 0.00 0.00 2.41
41 42 3.253220 AGGGGTAAGTGAATGGTGTGTA 58.747 45.455 0.00 0.00 0.00 2.90
42 43 2.062636 AGGGGTAAGTGAATGGTGTGT 58.937 47.619 0.00 0.00 0.00 3.72
43 44 2.879103 AGGGGTAAGTGAATGGTGTG 57.121 50.000 0.00 0.00 0.00 3.82
44 45 6.841781 AATATAGGGGTAAGTGAATGGTGT 57.158 37.500 0.00 0.00 0.00 4.16
45 46 8.047310 GGATAATATAGGGGTAAGTGAATGGTG 58.953 40.741 0.00 0.00 0.00 4.17
46 47 7.742213 TGGATAATATAGGGGTAAGTGAATGGT 59.258 37.037 0.00 0.00 0.00 3.55
47 48 8.158025 TGGATAATATAGGGGTAAGTGAATGG 57.842 38.462 0.00 0.00 0.00 3.16
101 102 9.956720 GCTTTTGCTGTCATAAATATCATACTT 57.043 29.630 0.00 0.00 43.35 2.24
120 121 7.567590 GCTCACAAGTAATTTAGTTGCTTTTGC 60.568 37.037 19.36 13.94 40.23 3.68
121 122 7.434897 TGCTCACAAGTAATTTAGTTGCTTTTG 59.565 33.333 19.36 12.38 40.23 2.44
122 123 7.435192 GTGCTCACAAGTAATTTAGTTGCTTTT 59.565 33.333 19.36 2.55 40.23 2.27
123 124 6.918022 GTGCTCACAAGTAATTTAGTTGCTTT 59.082 34.615 19.36 2.85 40.23 3.51
124 125 6.039270 TGTGCTCACAAGTAATTTAGTTGCTT 59.961 34.615 19.36 3.44 42.51 3.91
125 126 5.530915 TGTGCTCACAAGTAATTTAGTTGCT 59.469 36.000 19.36 8.01 41.66 3.91
126 127 5.757886 TGTGCTCACAAGTAATTTAGTTGC 58.242 37.500 19.36 9.45 41.66 4.17
140 141 1.955778 CAGGGAACAATTGTGCTCACA 59.044 47.619 19.02 0.00 39.98 3.58
141 142 1.956477 ACAGGGAACAATTGTGCTCAC 59.044 47.619 19.02 11.53 0.00 3.51
142 143 2.361757 CAACAGGGAACAATTGTGCTCA 59.638 45.455 19.02 0.00 0.00 4.26
143 144 2.863704 GCAACAGGGAACAATTGTGCTC 60.864 50.000 16.28 12.73 31.92 4.26
144 145 1.069049 GCAACAGGGAACAATTGTGCT 59.931 47.619 16.28 0.00 31.92 4.40
145 146 1.069049 AGCAACAGGGAACAATTGTGC 59.931 47.619 12.82 10.43 31.92 4.57
146 147 3.457610 AAGCAACAGGGAACAATTGTG 57.542 42.857 12.82 1.34 31.92 3.33
147 148 3.490761 CGAAAGCAACAGGGAACAATTGT 60.491 43.478 4.92 4.92 31.92 2.71
148 149 3.052036 CGAAAGCAACAGGGAACAATTG 58.948 45.455 3.24 3.24 0.00 2.32
149 150 3.369546 CGAAAGCAACAGGGAACAATT 57.630 42.857 0.00 0.00 0.00 2.32
164 165 0.314935 ACATGGTTGCCTTGCGAAAG 59.685 50.000 0.00 0.00 32.73 2.62
165 166 0.031857 CACATGGTTGCCTTGCGAAA 59.968 50.000 0.00 0.00 32.73 3.46
166 167 1.659233 CACATGGTTGCCTTGCGAA 59.341 52.632 0.00 0.00 32.73 4.70
167 168 2.267351 CCACATGGTTGCCTTGCGA 61.267 57.895 0.00 0.00 32.73 5.10
168 169 2.259204 CCACATGGTTGCCTTGCG 59.741 61.111 0.00 0.00 32.73 4.85
178 179 4.099727 TGATAATGATTGGCAACCACATGG 59.900 41.667 0.00 0.00 42.17 3.66
179 180 5.045215 GTGATAATGATTGGCAACCACATG 58.955 41.667 0.00 0.00 30.78 3.21
180 181 4.957954 AGTGATAATGATTGGCAACCACAT 59.042 37.500 0.00 6.33 30.78 3.21
181 182 4.343231 AGTGATAATGATTGGCAACCACA 58.657 39.130 0.00 3.97 30.78 4.17
182 183 4.989279 AGTGATAATGATTGGCAACCAC 57.011 40.909 0.00 2.81 30.78 4.16
183 184 5.999205 AAAGTGATAATGATTGGCAACCA 57.001 34.783 0.00 0.00 0.00 3.67
229 230 9.389570 CGACGAAAAACTACTTTCCAATTAATT 57.610 29.630 0.00 0.00 32.63 1.40
230 231 7.536281 GCGACGAAAAACTACTTTCCAATTAAT 59.464 33.333 0.00 0.00 32.63 1.40
231 232 6.852345 GCGACGAAAAACTACTTTCCAATTAA 59.148 34.615 0.00 0.00 32.63 1.40
232 233 6.203338 AGCGACGAAAAACTACTTTCCAATTA 59.797 34.615 0.00 0.00 32.63 1.40
233 234 5.008316 AGCGACGAAAAACTACTTTCCAATT 59.992 36.000 0.00 0.00 32.63 2.32
234 235 4.514066 AGCGACGAAAAACTACTTTCCAAT 59.486 37.500 0.00 0.00 32.63 3.16
235 236 3.872771 AGCGACGAAAAACTACTTTCCAA 59.127 39.130 0.00 0.00 32.63 3.53
236 237 3.460103 AGCGACGAAAAACTACTTTCCA 58.540 40.909 0.00 0.00 32.63 3.53
237 238 3.492011 TGAGCGACGAAAAACTACTTTCC 59.508 43.478 0.00 0.00 32.63 3.13
238 239 4.703899 TGAGCGACGAAAAACTACTTTC 57.296 40.909 0.00 0.00 32.88 2.62
239 240 4.552184 GCTTGAGCGACGAAAAACTACTTT 60.552 41.667 0.00 0.00 0.00 2.66
240 241 3.059800 GCTTGAGCGACGAAAAACTACTT 60.060 43.478 0.00 0.00 0.00 2.24
241 242 2.475487 GCTTGAGCGACGAAAAACTACT 59.525 45.455 0.00 0.00 0.00 2.57
242 243 2.824007 GCTTGAGCGACGAAAAACTAC 58.176 47.619 0.00 0.00 0.00 2.73
255 256 1.339438 TGGATTCAGTGGAGCTTGAGC 60.339 52.381 0.00 0.00 42.49 4.26
256 257 2.775911 TGGATTCAGTGGAGCTTGAG 57.224 50.000 0.00 0.00 0.00 3.02
257 258 2.373169 ACTTGGATTCAGTGGAGCTTGA 59.627 45.455 0.00 0.00 0.00 3.02
258 259 2.787994 ACTTGGATTCAGTGGAGCTTG 58.212 47.619 0.00 0.00 0.00 4.01
259 260 4.640771 TTACTTGGATTCAGTGGAGCTT 57.359 40.909 0.00 0.00 0.00 3.74
260 261 4.640771 TTTACTTGGATTCAGTGGAGCT 57.359 40.909 0.00 0.00 0.00 4.09
261 262 4.156739 CCTTTTACTTGGATTCAGTGGAGC 59.843 45.833 0.00 0.00 0.00 4.70
262 263 5.560724 TCCTTTTACTTGGATTCAGTGGAG 58.439 41.667 0.00 0.00 0.00 3.86
263 264 5.576563 TCCTTTTACTTGGATTCAGTGGA 57.423 39.130 0.00 0.00 0.00 4.02
264 265 5.048013 GGTTCCTTTTACTTGGATTCAGTGG 60.048 44.000 0.00 0.00 31.76 4.00
265 266 5.534654 TGGTTCCTTTTACTTGGATTCAGTG 59.465 40.000 0.00 0.00 31.76 3.66
266 267 5.535030 GTGGTTCCTTTTACTTGGATTCAGT 59.465 40.000 0.00 0.00 31.76 3.41
267 268 5.048013 GGTGGTTCCTTTTACTTGGATTCAG 60.048 44.000 0.00 0.00 31.76 3.02
268 269 4.830600 GGTGGTTCCTTTTACTTGGATTCA 59.169 41.667 0.00 0.00 31.76 2.57
269 270 5.077564 AGGTGGTTCCTTTTACTTGGATTC 58.922 41.667 0.00 0.00 45.67 2.52
270 271 5.074746 AGGTGGTTCCTTTTACTTGGATT 57.925 39.130 0.00 0.00 45.67 3.01
271 272 4.741928 AGGTGGTTCCTTTTACTTGGAT 57.258 40.909 0.00 0.00 45.67 3.41
284 285 5.869344 GCAAAGAAAATATGGAAGGTGGTTC 59.131 40.000 0.00 0.00 0.00 3.62
285 286 5.306678 TGCAAAGAAAATATGGAAGGTGGTT 59.693 36.000 0.00 0.00 0.00 3.67
286 287 4.837860 TGCAAAGAAAATATGGAAGGTGGT 59.162 37.500 0.00 0.00 0.00 4.16
287 288 5.404466 TGCAAAGAAAATATGGAAGGTGG 57.596 39.130 0.00 0.00 0.00 4.61
288 289 7.910441 ATTTGCAAAGAAAATATGGAAGGTG 57.090 32.000 18.19 0.00 0.00 4.00
289 290 8.377799 AGAATTTGCAAAGAAAATATGGAAGGT 58.622 29.630 18.19 0.00 0.00 3.50
290 291 8.782339 AGAATTTGCAAAGAAAATATGGAAGG 57.218 30.769 18.19 0.00 0.00 3.46
291 292 9.426837 TGAGAATTTGCAAAGAAAATATGGAAG 57.573 29.630 18.19 0.00 0.00 3.46
292 293 9.775854 TTGAGAATTTGCAAAGAAAATATGGAA 57.224 25.926 18.19 0.00 0.00 3.53
293 294 9.947433 ATTGAGAATTTGCAAAGAAAATATGGA 57.053 25.926 18.19 0.00 0.00 3.41
314 315 9.893305 CCAAGTTGTAGGTAAAAGTAAATTGAG 57.107 33.333 1.45 0.00 0.00 3.02
315 316 9.629878 TCCAAGTTGTAGGTAAAAGTAAATTGA 57.370 29.630 1.45 0.00 0.00 2.57
320 321 8.354426 GCAAATCCAAGTTGTAGGTAAAAGTAA 58.646 33.333 1.45 0.00 0.00 2.24
321 322 7.040271 GGCAAATCCAAGTTGTAGGTAAAAGTA 60.040 37.037 1.45 0.00 34.01 2.24
322 323 6.239204 GGCAAATCCAAGTTGTAGGTAAAAGT 60.239 38.462 1.45 0.00 34.01 2.66
323 324 6.015434 AGGCAAATCCAAGTTGTAGGTAAAAG 60.015 38.462 1.45 0.00 37.29 2.27
324 325 5.836358 AGGCAAATCCAAGTTGTAGGTAAAA 59.164 36.000 1.45 0.00 37.29 1.52
325 326 5.390387 AGGCAAATCCAAGTTGTAGGTAAA 58.610 37.500 1.45 0.00 37.29 2.01
326 327 4.993028 AGGCAAATCCAAGTTGTAGGTAA 58.007 39.130 1.45 0.00 37.29 2.85
327 328 4.650972 AGGCAAATCCAAGTTGTAGGTA 57.349 40.909 1.45 0.00 37.29 3.08
328 329 3.525800 AGGCAAATCCAAGTTGTAGGT 57.474 42.857 1.45 0.00 37.29 3.08
329 330 4.039124 ACAAAGGCAAATCCAAGTTGTAGG 59.961 41.667 1.45 0.00 35.88 3.18
330 331 5.200368 ACAAAGGCAAATCCAAGTTGTAG 57.800 39.130 1.45 0.00 35.88 2.74
331 332 5.606348 AACAAAGGCAAATCCAAGTTGTA 57.394 34.783 1.45 0.00 36.31 2.41
332 333 4.486125 AACAAAGGCAAATCCAAGTTGT 57.514 36.364 1.45 0.00 37.86 3.32
333 334 5.816449 AAAACAAAGGCAAATCCAAGTTG 57.184 34.783 0.00 0.00 37.29 3.16
334 335 5.942826 TGAAAAACAAAGGCAAATCCAAGTT 59.057 32.000 0.00 0.00 37.29 2.66
335 336 5.495640 TGAAAAACAAAGGCAAATCCAAGT 58.504 33.333 0.00 0.00 37.29 3.16
336 337 5.504501 GCTGAAAAACAAAGGCAAATCCAAG 60.505 40.000 0.00 0.00 37.29 3.61
337 338 4.335037 GCTGAAAAACAAAGGCAAATCCAA 59.665 37.500 0.00 0.00 37.29 3.53
338 339 3.876320 GCTGAAAAACAAAGGCAAATCCA 59.124 39.130 0.00 0.00 37.29 3.41
339 340 4.129380 AGCTGAAAAACAAAGGCAAATCC 58.871 39.130 0.00 0.00 0.00 3.01
340 341 5.739752 AAGCTGAAAAACAAAGGCAAATC 57.260 34.783 0.00 0.00 0.00 2.17
341 342 6.597280 TGTAAAGCTGAAAAACAAAGGCAAAT 59.403 30.769 0.00 0.00 0.00 2.32
342 343 5.934625 TGTAAAGCTGAAAAACAAAGGCAAA 59.065 32.000 0.00 0.00 0.00 3.68
343 344 5.482908 TGTAAAGCTGAAAAACAAAGGCAA 58.517 33.333 0.00 0.00 0.00 4.52
344 345 5.078411 TGTAAAGCTGAAAAACAAAGGCA 57.922 34.783 0.00 0.00 0.00 4.75
345 346 6.415798 TTTGTAAAGCTGAAAAACAAAGGC 57.584 33.333 0.00 0.00 35.69 4.35
377 378 8.204836 GCTGGAAAGATAAGTTTAGTCCATCTA 58.795 37.037 0.00 0.00 0.00 1.98
378 379 7.051000 GCTGGAAAGATAAGTTTAGTCCATCT 58.949 38.462 0.00 0.00 0.00 2.90
379 380 7.051000 AGCTGGAAAGATAAGTTTAGTCCATC 58.949 38.462 0.00 0.00 0.00 3.51
380 381 6.963322 AGCTGGAAAGATAAGTTTAGTCCAT 58.037 36.000 0.00 0.00 0.00 3.41
381 382 6.013725 TGAGCTGGAAAGATAAGTTTAGTCCA 60.014 38.462 0.00 0.00 0.00 4.02
382 383 6.407202 TGAGCTGGAAAGATAAGTTTAGTCC 58.593 40.000 0.00 0.00 0.00 3.85
383 384 7.907214 TTGAGCTGGAAAGATAAGTTTAGTC 57.093 36.000 0.00 0.00 0.00 2.59
384 385 8.870075 AATTGAGCTGGAAAGATAAGTTTAGT 57.130 30.769 0.00 0.00 0.00 2.24
387 388 9.481340 GAAAAATTGAGCTGGAAAGATAAGTTT 57.519 29.630 0.00 0.00 0.00 2.66
388 389 8.090831 GGAAAAATTGAGCTGGAAAGATAAGTT 58.909 33.333 0.00 0.00 0.00 2.66
389 390 7.452813 AGGAAAAATTGAGCTGGAAAGATAAGT 59.547 33.333 0.00 0.00 0.00 2.24
390 391 7.834803 AGGAAAAATTGAGCTGGAAAGATAAG 58.165 34.615 0.00 0.00 0.00 1.73
391 392 7.781324 AGGAAAAATTGAGCTGGAAAGATAA 57.219 32.000 0.00 0.00 0.00 1.75
392 393 7.781324 AAGGAAAAATTGAGCTGGAAAGATA 57.219 32.000 0.00 0.00 0.00 1.98
393 394 6.676990 AAGGAAAAATTGAGCTGGAAAGAT 57.323 33.333 0.00 0.00 0.00 2.40
394 395 7.595819 TTAAGGAAAAATTGAGCTGGAAAGA 57.404 32.000 0.00 0.00 0.00 2.52
395 396 8.837788 AATTAAGGAAAAATTGAGCTGGAAAG 57.162 30.769 0.00 0.00 0.00 2.62
396 397 9.625747 AAAATTAAGGAAAAATTGAGCTGGAAA 57.374 25.926 0.00 0.00 0.00 3.13
397 398 9.054922 CAAAATTAAGGAAAAATTGAGCTGGAA 57.945 29.630 0.00 0.00 0.00 3.53
398 399 8.210265 ACAAAATTAAGGAAAAATTGAGCTGGA 58.790 29.630 0.00 0.00 0.00 3.86
399 400 8.382030 ACAAAATTAAGGAAAAATTGAGCTGG 57.618 30.769 0.00 0.00 0.00 4.85
412 413 8.821894 GCACAAAACATTGTACAAAATTAAGGA 58.178 29.630 13.23 0.00 33.17 3.36
413 414 8.607459 TGCACAAAACATTGTACAAAATTAAGG 58.393 29.630 13.23 2.96 33.17 2.69
417 418 8.671921 TGAATGCACAAAACATTGTACAAAATT 58.328 25.926 13.23 7.12 37.85 1.82
418 419 8.206325 TGAATGCACAAAACATTGTACAAAAT 57.794 26.923 13.23 0.37 37.85 1.82
419 420 7.601073 TGAATGCACAAAACATTGTACAAAA 57.399 28.000 13.23 0.00 37.85 2.44
420 421 7.783090 ATGAATGCACAAAACATTGTACAAA 57.217 28.000 13.23 0.00 37.85 2.83
425 426 9.872721 TTCATATATGAATGCACAAAACATTGT 57.127 25.926 21.67 0.00 41.51 2.71
504 505 9.638176 AGCATGAATCACTCCTTTATTTCTAAT 57.362 29.630 0.00 0.00 0.00 1.73
505 506 9.113838 GAGCATGAATCACTCCTTTATTTCTAA 57.886 33.333 0.00 0.00 0.00 2.10
506 507 7.439356 CGAGCATGAATCACTCCTTTATTTCTA 59.561 37.037 0.00 0.00 0.00 2.10
507 508 6.259608 CGAGCATGAATCACTCCTTTATTTCT 59.740 38.462 0.00 0.00 0.00 2.52
508 509 6.258727 TCGAGCATGAATCACTCCTTTATTTC 59.741 38.462 0.00 0.00 0.00 2.17
509 510 6.115446 TCGAGCATGAATCACTCCTTTATTT 58.885 36.000 0.00 0.00 0.00 1.40
510 511 5.674525 TCGAGCATGAATCACTCCTTTATT 58.325 37.500 0.00 0.00 0.00 1.40
511 512 5.282055 TCGAGCATGAATCACTCCTTTAT 57.718 39.130 0.00 0.00 0.00 1.40
512 513 4.736126 TCGAGCATGAATCACTCCTTTA 57.264 40.909 0.00 0.00 0.00 1.85
513 514 3.616956 TCGAGCATGAATCACTCCTTT 57.383 42.857 0.00 0.00 0.00 3.11
514 515 3.616956 TTCGAGCATGAATCACTCCTT 57.383 42.857 0.00 0.00 0.00 3.36
515 516 3.616956 TTTCGAGCATGAATCACTCCT 57.383 42.857 0.00 0.00 0.00 3.69
516 517 4.685169 TTTTTCGAGCATGAATCACTCC 57.315 40.909 0.00 0.00 0.00 3.85
537 538 9.593134 TGTTTGTAAATTTGAGCAAATACAGTT 57.407 25.926 8.70 3.13 39.88 3.16
538 539 9.030301 GTGTTTGTAAATTTGAGCAAATACAGT 57.970 29.630 23.07 0.00 40.31 3.55
539 540 9.029243 TGTGTTTGTAAATTTGAGCAAATACAG 57.971 29.630 24.80 0.00 43.04 2.74
540 541 8.932945 TGTGTTTGTAAATTTGAGCAAATACA 57.067 26.923 24.80 24.80 44.45 2.29
541 542 9.796062 CATGTGTTTGTAAATTTGAGCAAATAC 57.204 29.630 22.22 22.22 39.88 1.89
542 543 8.494347 GCATGTGTTTGTAAATTTGAGCAAATA 58.506 29.630 8.70 12.04 39.88 1.40
543 544 7.354257 GCATGTGTTTGTAAATTTGAGCAAAT 58.646 30.769 15.36 2.74 42.35 2.32
544 545 6.238320 GGCATGTGTTTGTAAATTTGAGCAAA 60.238 34.615 0.00 7.05 34.46 3.68
545 546 5.236047 GGCATGTGTTTGTAAATTTGAGCAA 59.764 36.000 0.00 1.11 0.00 3.91
546 547 4.749099 GGCATGTGTTTGTAAATTTGAGCA 59.251 37.500 0.00 0.00 0.00 4.26
547 548 4.143347 CGGCATGTGTTTGTAAATTTGAGC 60.143 41.667 0.00 0.00 0.00 4.26
548 549 4.981674 ACGGCATGTGTTTGTAAATTTGAG 59.018 37.500 0.00 0.00 0.00 3.02
549 550 4.938080 ACGGCATGTGTTTGTAAATTTGA 58.062 34.783 0.00 0.00 0.00 2.69
550 551 4.742167 TGACGGCATGTGTTTGTAAATTTG 59.258 37.500 0.00 0.00 0.00 2.32
551 552 4.742659 GTGACGGCATGTGTTTGTAAATTT 59.257 37.500 0.00 0.00 0.00 1.82
552 553 4.202060 TGTGACGGCATGTGTTTGTAAATT 60.202 37.500 0.00 0.00 0.00 1.82
553 554 3.316588 TGTGACGGCATGTGTTTGTAAAT 59.683 39.130 0.00 0.00 0.00 1.40
554 555 2.683362 TGTGACGGCATGTGTTTGTAAA 59.317 40.909 0.00 0.00 0.00 2.01
555 556 2.289565 TGTGACGGCATGTGTTTGTAA 58.710 42.857 0.00 0.00 0.00 2.41
556 557 1.954927 TGTGACGGCATGTGTTTGTA 58.045 45.000 0.00 0.00 0.00 2.41
557 558 1.317613 ATGTGACGGCATGTGTTTGT 58.682 45.000 0.00 0.00 0.00 2.83
558 559 2.052891 CAATGTGACGGCATGTGTTTG 58.947 47.619 0.00 0.00 0.00 2.93
559 560 1.680735 ACAATGTGACGGCATGTGTTT 59.319 42.857 0.00 0.00 0.00 2.83
560 561 1.317613 ACAATGTGACGGCATGTGTT 58.682 45.000 0.00 0.00 0.00 3.32
561 562 2.177394 TACAATGTGACGGCATGTGT 57.823 45.000 6.24 7.83 0.00 3.72
562 563 2.159531 CCTTACAATGTGACGGCATGTG 60.160 50.000 6.24 1.87 0.00 3.21
563 564 2.083774 CCTTACAATGTGACGGCATGT 58.916 47.619 0.00 0.00 0.00 3.21
564 565 2.352651 CTCCTTACAATGTGACGGCATG 59.647 50.000 0.00 0.00 0.00 4.06
565 566 2.632377 CTCCTTACAATGTGACGGCAT 58.368 47.619 0.00 0.00 0.00 4.40
566 567 1.338674 CCTCCTTACAATGTGACGGCA 60.339 52.381 0.00 0.00 0.00 5.69
567 568 1.369625 CCTCCTTACAATGTGACGGC 58.630 55.000 0.00 0.00 0.00 5.68
568 569 1.553248 TCCCTCCTTACAATGTGACGG 59.447 52.381 0.00 0.00 0.00 4.79
569 570 3.543680 ATCCCTCCTTACAATGTGACG 57.456 47.619 0.00 0.00 0.00 4.35
570 571 5.104259 AGAATCCCTCCTTACAATGTGAC 57.896 43.478 0.00 0.00 0.00 3.67
571 572 4.782691 TGAGAATCCCTCCTTACAATGTGA 59.217 41.667 0.00 0.00 41.25 3.58
572 573 5.102953 TGAGAATCCCTCCTTACAATGTG 57.897 43.478 0.00 0.00 41.25 3.21
573 574 5.983333 ATGAGAATCCCTCCTTACAATGT 57.017 39.130 0.00 0.00 41.25 2.71
574 575 6.183361 TGGTATGAGAATCCCTCCTTACAATG 60.183 42.308 0.00 0.00 41.25 2.82
575 576 5.911178 TGGTATGAGAATCCCTCCTTACAAT 59.089 40.000 0.00 0.00 41.25 2.71
576 577 5.285401 TGGTATGAGAATCCCTCCTTACAA 58.715 41.667 0.00 0.00 41.25 2.41
577 578 4.890988 TGGTATGAGAATCCCTCCTTACA 58.109 43.478 0.00 0.00 41.25 2.41
578 579 4.284746 CCTGGTATGAGAATCCCTCCTTAC 59.715 50.000 0.00 0.00 41.25 2.34
579 580 4.077982 ACCTGGTATGAGAATCCCTCCTTA 60.078 45.833 0.00 0.00 41.25 2.69
580 581 3.311702 ACCTGGTATGAGAATCCCTCCTT 60.312 47.826 0.00 0.00 41.25 3.36
581 582 2.251338 ACCTGGTATGAGAATCCCTCCT 59.749 50.000 0.00 0.00 41.25 3.69
582 583 2.370189 CACCTGGTATGAGAATCCCTCC 59.630 54.545 0.00 0.00 41.25 4.30
583 584 3.070302 GTCACCTGGTATGAGAATCCCTC 59.930 52.174 0.00 0.00 42.30 4.30
584 585 3.041946 GTCACCTGGTATGAGAATCCCT 58.958 50.000 0.00 0.00 0.00 4.20
585 586 2.224066 CGTCACCTGGTATGAGAATCCC 60.224 54.545 0.00 0.00 0.00 3.85
586 587 2.224066 CCGTCACCTGGTATGAGAATCC 60.224 54.545 0.00 0.00 0.00 3.01
587 588 2.431057 ACCGTCACCTGGTATGAGAATC 59.569 50.000 0.00 0.00 38.15 2.52
588 589 2.168521 CACCGTCACCTGGTATGAGAAT 59.831 50.000 0.00 0.00 37.72 2.40
589 590 1.548719 CACCGTCACCTGGTATGAGAA 59.451 52.381 0.00 0.00 37.72 2.87
590 591 1.182667 CACCGTCACCTGGTATGAGA 58.817 55.000 0.00 0.00 37.72 3.27
591 592 0.175760 CCACCGTCACCTGGTATGAG 59.824 60.000 0.00 0.00 37.72 2.90
592 593 1.261938 CCCACCGTCACCTGGTATGA 61.262 60.000 0.00 0.00 37.72 2.15
593 594 1.220749 CCCACCGTCACCTGGTATG 59.779 63.158 0.00 0.00 37.72 2.39
594 595 2.666098 GCCCACCGTCACCTGGTAT 61.666 63.158 0.00 0.00 37.72 2.73
595 596 3.315949 GCCCACCGTCACCTGGTA 61.316 66.667 0.00 0.00 37.72 3.25
607 608 4.832608 CTACCCTTCGGCGCCCAC 62.833 72.222 23.46 0.00 0.00 4.61
610 611 4.468689 AAGCTACCCTTCGGCGCC 62.469 66.667 19.07 19.07 30.98 6.53
611 612 3.195698 CAAGCTACCCTTCGGCGC 61.196 66.667 0.00 0.00 0.00 6.53
612 613 1.519455 CTCAAGCTACCCTTCGGCG 60.519 63.158 0.00 0.00 0.00 6.46
613 614 1.815840 GCTCAAGCTACCCTTCGGC 60.816 63.158 0.00 0.00 38.21 5.54
614 615 4.522971 GCTCAAGCTACCCTTCGG 57.477 61.111 0.00 0.00 38.21 4.30
624 625 1.300963 TGGATCCCACAGCTCAAGC 59.699 57.895 9.90 0.00 42.49 4.01
634 635 1.080498 AGGAAGGTAGTGTGGATCCCA 59.920 52.381 9.90 3.88 0.00 4.37
635 636 1.763545 GAGGAAGGTAGTGTGGATCCC 59.236 57.143 9.90 0.85 0.00 3.85
636 637 2.753247 AGAGGAAGGTAGTGTGGATCC 58.247 52.381 4.20 4.20 0.00 3.36
637 638 3.118592 CCAAGAGGAAGGTAGTGTGGATC 60.119 52.174 0.00 0.00 36.89 3.36
638 639 2.840651 CCAAGAGGAAGGTAGTGTGGAT 59.159 50.000 0.00 0.00 36.89 3.41
639 640 2.257207 CCAAGAGGAAGGTAGTGTGGA 58.743 52.381 0.00 0.00 36.89 4.02
640 641 1.978580 ACCAAGAGGAAGGTAGTGTGG 59.021 52.381 0.00 0.00 36.07 4.17
641 642 2.632996 TGACCAAGAGGAAGGTAGTGTG 59.367 50.000 0.00 0.00 38.50 3.82
642 643 2.972348 TGACCAAGAGGAAGGTAGTGT 58.028 47.619 0.00 0.00 38.50 3.55
643 644 4.442192 GCTATGACCAAGAGGAAGGTAGTG 60.442 50.000 0.00 0.00 38.50 2.74
644 645 3.707102 GCTATGACCAAGAGGAAGGTAGT 59.293 47.826 0.00 0.00 38.50 2.73
645 646 3.706594 TGCTATGACCAAGAGGAAGGTAG 59.293 47.826 0.00 0.00 38.50 3.18
646 647 3.719871 TGCTATGACCAAGAGGAAGGTA 58.280 45.455 0.00 0.00 38.50 3.08
647 648 2.551270 TGCTATGACCAAGAGGAAGGT 58.449 47.619 0.00 0.00 41.83 3.50
648 649 3.853355 ATGCTATGACCAAGAGGAAGG 57.147 47.619 0.00 0.00 38.69 3.46
649 650 7.814264 AAAATATGCTATGACCAAGAGGAAG 57.186 36.000 0.00 0.00 38.69 3.46
650 651 9.342308 CTAAAAATATGCTATGACCAAGAGGAA 57.658 33.333 0.00 0.00 38.69 3.36
651 652 8.494433 ACTAAAAATATGCTATGACCAAGAGGA 58.506 33.333 0.00 0.00 38.69 3.71
652 653 8.682936 ACTAAAAATATGCTATGACCAAGAGG 57.317 34.615 0.00 0.00 42.21 3.69
675 676 5.053145 TGTTTGCACTGTGTTTTTCAAACT 58.947 33.333 26.25 0.00 41.96 2.66
715 718 7.779754 TTCATAAAGGGTAGGCGTATATACA 57.220 36.000 13.22 0.00 0.00 2.29
716 719 7.224167 GCATTCATAAAGGGTAGGCGTATATAC 59.776 40.741 2.53 2.53 0.00 1.47
719 722 5.012251 TGCATTCATAAAGGGTAGGCGTATA 59.988 40.000 0.00 0.00 0.00 1.47
724 727 3.287222 TGTGCATTCATAAAGGGTAGGC 58.713 45.455 0.00 0.00 0.00 3.93
725 728 4.780815 TCTGTGCATTCATAAAGGGTAGG 58.219 43.478 0.00 0.00 0.00 3.18
726 729 6.150976 TGTTTCTGTGCATTCATAAAGGGTAG 59.849 38.462 0.00 0.00 0.00 3.18
729 732 5.163513 GTGTTTCTGTGCATTCATAAAGGG 58.836 41.667 0.00 0.00 0.00 3.95
731 734 4.321745 GCGTGTTTCTGTGCATTCATAAAG 59.678 41.667 0.00 0.00 0.00 1.85
745 748 2.035576 AGAAGGTAAGACGCGTGTTTCT 59.964 45.455 27.21 19.50 0.00 2.52
748 751 2.816087 TCTAGAAGGTAAGACGCGTGTT 59.184 45.455 25.45 25.45 0.00 3.32
749 752 2.419324 CTCTAGAAGGTAAGACGCGTGT 59.581 50.000 20.70 11.10 0.00 4.49
755 758 3.313249 GCTCCGTCTCTAGAAGGTAAGAC 59.687 52.174 11.07 0.00 43.00 3.01
756 759 3.200385 AGCTCCGTCTCTAGAAGGTAAGA 59.800 47.826 11.07 0.00 43.00 2.10
758 761 3.280295 CAGCTCCGTCTCTAGAAGGTAA 58.720 50.000 11.07 0.00 43.00 2.85
766 769 2.294449 ATATGGCAGCTCCGTCTCTA 57.706 50.000 0.00 0.00 37.80 2.43
772 775 4.940046 AGATATCAAAATATGGCAGCTCCG 59.060 41.667 5.32 0.00 37.80 4.63
780 783 9.173939 GCGACTTCAAAAGATATCAAAATATGG 57.826 33.333 5.32 0.00 0.00 2.74
794 797 1.217882 ACGTGAGGCGACTTCAAAAG 58.782 50.000 0.00 0.00 44.43 2.27
795 798 2.512485 TACGTGAGGCGACTTCAAAA 57.488 45.000 0.00 0.00 44.43 2.44
796 799 2.512485 TTACGTGAGGCGACTTCAAA 57.488 45.000 0.00 0.00 44.43 2.69
797 800 2.736144 ATTACGTGAGGCGACTTCAA 57.264 45.000 0.00 0.00 44.43 2.69
798 801 2.602878 GAATTACGTGAGGCGACTTCA 58.397 47.619 0.00 0.00 44.43 3.02
819 822 0.677842 ACACCACACCCTTCGACTAC 59.322 55.000 0.00 0.00 0.00 2.73
834 837 6.745450 CGTTAATTTCAATGGTATGACACACC 59.255 38.462 0.00 0.00 36.54 4.16
835 838 7.523219 TCGTTAATTTCAATGGTATGACACAC 58.477 34.615 0.00 0.00 0.00 3.82
836 839 7.674471 TCGTTAATTTCAATGGTATGACACA 57.326 32.000 0.00 0.00 0.00 3.72
837 840 8.181573 ACATCGTTAATTTCAATGGTATGACAC 58.818 33.333 0.00 0.00 0.00 3.67
838 841 8.275015 ACATCGTTAATTTCAATGGTATGACA 57.725 30.769 0.00 0.00 0.00 3.58
839 842 7.582679 CGACATCGTTAATTTCAATGGTATGAC 59.417 37.037 0.00 0.00 34.11 3.06
844 847 6.489127 TTCGACATCGTTAATTTCAATGGT 57.511 33.333 0.54 0.00 40.80 3.55
854 857 9.932699 TTGTTTTAATCTTTTCGACATCGTTAA 57.067 25.926 0.54 0.00 40.80 2.01
858 865 9.329913 AGATTTGTTTTAATCTTTTCGACATCG 57.670 29.630 0.00 0.00 40.99 3.84
943 950 0.528924 CGATAGGTTCGGTGTGGTGA 59.471 55.000 0.00 0.00 44.28 4.02
965 984 6.435591 TGGTGCACCAGAATAAATGAACATAA 59.564 34.615 34.74 5.01 42.01 1.90
1055 1074 3.228688 GATTTCGATGCTCGCGGGC 62.229 63.158 27.48 27.48 40.21 6.13
1056 1075 1.552348 GAGATTTCGATGCTCGCGGG 61.552 60.000 6.13 2.60 40.21 6.13
1108 1127 4.457496 CTCACTGGCCGGCATCGT 62.457 66.667 30.85 18.56 33.95 3.73
1187 1206 2.430332 AGGAAGAAGAAGAGGCGATGAG 59.570 50.000 0.00 0.00 0.00 2.90
1460 1479 0.324943 TGTACTTGGCCTGCTCCTTC 59.675 55.000 3.32 0.00 0.00 3.46
1577 1601 5.236911 TCTGCGTACGATACATGTACATACA 59.763 40.000 21.65 0.00 41.76 2.29
1578 1602 5.562998 GTCTGCGTACGATACATGTACATAC 59.437 44.000 21.65 9.79 41.76 2.39
1579 1603 5.613142 CGTCTGCGTACGATACATGTACATA 60.613 44.000 21.65 0.00 45.68 2.29
1580 1604 4.534168 GTCTGCGTACGATACATGTACAT 58.466 43.478 21.65 1.41 41.76 2.29
1581 1605 3.544637 CGTCTGCGTACGATACATGTACA 60.545 47.826 21.65 0.00 45.68 2.90
1582 1606 2.962834 CGTCTGCGTACGATACATGTAC 59.037 50.000 21.65 5.68 45.68 2.90
1583 1607 2.865551 TCGTCTGCGTACGATACATGTA 59.134 45.455 21.65 8.27 46.29 2.29
1584 1608 1.667212 TCGTCTGCGTACGATACATGT 59.333 47.619 21.65 2.69 46.29 3.21
1585 1609 2.378507 TCGTCTGCGTACGATACATG 57.621 50.000 21.65 4.70 46.29 3.21
1593 1617 1.071567 GCTCTGGTTCGTCTGCGTAC 61.072 60.000 0.00 0.00 39.49 3.67
1621 1645 4.072131 TGAAAACAGAGTACAATCCAGGC 58.928 43.478 0.00 0.00 0.00 4.85
1624 1648 4.506625 CCCCTGAAAACAGAGTACAATCCA 60.507 45.833 0.00 0.00 0.00 3.41
1627 1651 3.074538 AGCCCCTGAAAACAGAGTACAAT 59.925 43.478 0.00 0.00 0.00 2.71
1754 1789 4.329545 GGTTGTCGGCCAGCTCCA 62.330 66.667 2.24 0.00 0.00 3.86
1873 1910 3.702548 TGAAATGGGGCAAGAAGATGATG 59.297 43.478 0.00 0.00 0.00 3.07
1874 1911 3.985127 TGAAATGGGGCAAGAAGATGAT 58.015 40.909 0.00 0.00 0.00 2.45
1885 1922 2.645192 CCACGGGTTGAAATGGGGC 61.645 63.158 0.00 0.00 0.00 5.80
1893 1931 0.971386 GTTAGGACTCCACGGGTTGA 59.029 55.000 0.00 0.00 0.00 3.18
1899 1937 1.191535 TCCATGGTTAGGACTCCACG 58.808 55.000 12.58 0.00 36.50 4.94
1903 1941 2.224305 CCCGATTCCATGGTTAGGACTC 60.224 54.545 12.58 0.00 34.19 3.36
1904 1942 1.768870 CCCGATTCCATGGTTAGGACT 59.231 52.381 12.58 0.00 34.19 3.85
1908 1946 0.884704 CCGCCCGATTCCATGGTTAG 60.885 60.000 12.58 1.21 0.00 2.34
2096 2194 4.821589 GGAGCTCGGGAACAGCCG 62.822 72.222 7.83 0.00 37.63 5.52
2271 2377 3.512516 GCTTCTGCGCATCACCCC 61.513 66.667 12.24 0.00 0.00 4.95
2280 2386 3.782244 GCGTGACCTGCTTCTGCG 61.782 66.667 0.00 0.00 43.34 5.18
2305 2411 3.674523 TGCAGCGACTCGTGCTCT 61.675 61.111 19.65 0.47 41.72 4.09
2317 2423 2.124570 ATCATGTCCCGGTGCAGC 60.125 61.111 5.64 5.64 0.00 5.25
2591 2697 0.435008 CTCTCGCTCGAAACAAACCG 59.565 55.000 0.00 0.00 0.00 4.44
2627 2733 8.980481 ATGGTGAATTTATTCGAAATCCTACT 57.020 30.769 0.00 0.00 39.62 2.57
2652 2758 8.816144 GTGCTCAATCAAATTCAAGTGTTAAAA 58.184 29.630 0.00 0.00 0.00 1.52
2653 2759 8.196771 AGTGCTCAATCAAATTCAAGTGTTAAA 58.803 29.630 0.00 0.00 0.00 1.52
2668 2774 1.675310 CGGGCCAAGTGCTCAATCA 60.675 57.895 4.39 0.00 42.28 2.57
2706 2812 5.584649 CCTCGAAGTGCATATTAAAACAGGA 59.415 40.000 0.00 0.00 0.00 3.86
2739 2851 0.740868 TATCGCAGCAGCTTGTCACC 60.741 55.000 0.00 0.00 39.10 4.02
2743 2855 2.028420 TTGATATCGCAGCAGCTTGT 57.972 45.000 0.00 0.00 39.10 3.16
2748 2860 6.146673 TCAGTATTTGATTGATATCGCAGCAG 59.853 38.462 0.00 0.00 33.23 4.24
2784 2901 3.673956 TATTGCAGGGGACACGCCG 62.674 63.158 0.00 0.00 41.60 6.46
2811 2928 2.158505 ACCTAGGGCACGCTAATCTCTA 60.159 50.000 14.81 0.00 0.00 2.43
2818 2935 4.265206 GGTACCTAGGGCACGCTA 57.735 61.111 14.81 0.00 0.00 4.26
2841 2958 4.554036 GGGATCCTGTCAGCCCGC 62.554 72.222 12.58 0.00 0.00 6.13
3024 3145 6.553100 ACAAAAAGGTGGATGGTAGATTTGAA 59.447 34.615 0.00 0.00 0.00 2.69
3035 3156 3.304659 CCGAGAACACAAAAAGGTGGATG 60.305 47.826 0.00 0.00 43.08 3.51
3058 3180 8.598041 ACCCCTTCTTAGATGTATATAAAGCAG 58.402 37.037 0.00 0.00 0.00 4.24
3080 3202 0.035343 GTCCCTACAGCAAAGACCCC 60.035 60.000 0.00 0.00 0.00 4.95
3091 3235 1.568504 CCAACAGGCTAGTCCCTACA 58.431 55.000 0.00 0.00 32.78 2.74
3145 3292 9.787435 TTTATGTGTGTGGTTAATTTAGAGAGT 57.213 29.630 0.00 0.00 0.00 3.24
3157 3304 4.760204 GGCTAGTCTTTTATGTGTGTGGTT 59.240 41.667 0.00 0.00 0.00 3.67
3321 3712 2.364002 GCAGGACTTAAGGGTTTTGCAA 59.636 45.455 7.53 0.00 32.80 4.08
3334 3725 3.117663 TCCTACAAACCAAAGCAGGACTT 60.118 43.478 0.00 0.00 41.70 3.01
3337 3728 3.586470 TTCCTACAAACCAAAGCAGGA 57.414 42.857 0.00 0.00 0.00 3.86
3338 3729 4.871933 AATTCCTACAAACCAAAGCAGG 57.128 40.909 0.00 0.00 0.00 4.85
3339 3730 5.841810 TGAAATTCCTACAAACCAAAGCAG 58.158 37.500 0.00 0.00 0.00 4.24
3340 3731 5.860941 TGAAATTCCTACAAACCAAAGCA 57.139 34.783 0.00 0.00 0.00 3.91
3341 3732 7.035612 CCTATGAAATTCCTACAAACCAAAGC 58.964 38.462 0.00 0.00 0.00 3.51
3342 3733 8.348285 TCCTATGAAATTCCTACAAACCAAAG 57.652 34.615 0.00 0.00 0.00 2.77
3343 3734 8.893563 ATCCTATGAAATTCCTACAAACCAAA 57.106 30.769 0.00 0.00 0.00 3.28
3344 3735 8.893563 AATCCTATGAAATTCCTACAAACCAA 57.106 30.769 0.00 0.00 0.00 3.67
3345 3736 8.893563 AAATCCTATGAAATTCCTACAAACCA 57.106 30.769 0.00 0.00 0.00 3.67
3375 3766 9.440773 GAAAATTTCCTTTGCAAATCCTATCTT 57.559 29.630 13.23 2.34 0.00 2.40
3376 3767 8.819845 AGAAAATTTCCTTTGCAAATCCTATCT 58.180 29.630 13.23 6.66 0.00 1.98
3377 3768 9.440773 AAGAAAATTTCCTTTGCAAATCCTATC 57.559 29.630 13.23 4.58 0.00 2.08
3378 3769 9.797642 AAAGAAAATTTCCTTTGCAAATCCTAT 57.202 25.926 13.23 2.02 32.00 2.57
3379 3770 9.054922 CAAAGAAAATTTCCTTTGCAAATCCTA 57.945 29.630 15.70 0.00 41.56 2.94
3380 3771 7.774625 TCAAAGAAAATTTCCTTTGCAAATCCT 59.225 29.630 21.32 0.00 45.22 3.24
3381 3772 7.929159 TCAAAGAAAATTTCCTTTGCAAATCC 58.071 30.769 21.32 0.00 45.22 3.01
3382 3773 9.442033 CTTCAAAGAAAATTTCCTTTGCAAATC 57.558 29.630 21.32 4.69 45.22 2.17
3383 3774 7.916977 GCTTCAAAGAAAATTTCCTTTGCAAAT 59.083 29.630 21.32 0.00 45.22 2.32
3384 3775 7.249858 GCTTCAAAGAAAATTTCCTTTGCAAA 58.750 30.769 21.32 12.14 45.22 3.68
3385 3776 6.183360 GGCTTCAAAGAAAATTTCCTTTGCAA 60.183 34.615 21.32 15.60 45.22 4.08
3386 3777 5.296531 GGCTTCAAAGAAAATTTCCTTTGCA 59.703 36.000 21.32 12.40 45.22 4.08
3387 3778 5.296531 TGGCTTCAAAGAAAATTTCCTTTGC 59.703 36.000 21.32 12.13 45.22 3.68
3388 3779 6.923928 TGGCTTCAAAGAAAATTTCCTTTG 57.076 33.333 20.39 20.39 46.30 2.77
3389 3780 8.407832 CAAATGGCTTCAAAGAAAATTTCCTTT 58.592 29.630 0.00 0.00 33.29 3.11
3390 3781 7.013559 CCAAATGGCTTCAAAGAAAATTTCCTT 59.986 33.333 1.57 0.00 0.00 3.36
3391 3782 6.487668 CCAAATGGCTTCAAAGAAAATTTCCT 59.512 34.615 1.57 0.00 0.00 3.36
3392 3783 6.262944 ACCAAATGGCTTCAAAGAAAATTTCC 59.737 34.615 1.57 0.00 39.32 3.13
3393 3784 7.263100 ACCAAATGGCTTCAAAGAAAATTTC 57.737 32.000 0.00 0.00 39.32 2.17
3394 3785 7.467131 CGAACCAAATGGCTTCAAAGAAAATTT 60.467 33.333 0.00 0.00 39.32 1.82
3395 3786 6.018016 CGAACCAAATGGCTTCAAAGAAAATT 60.018 34.615 0.00 0.00 39.32 1.82
3396 3787 5.466393 CGAACCAAATGGCTTCAAAGAAAAT 59.534 36.000 0.00 0.00 39.32 1.82
3397 3788 4.808364 CGAACCAAATGGCTTCAAAGAAAA 59.192 37.500 0.00 0.00 39.32 2.29
3398 3789 4.142049 ACGAACCAAATGGCTTCAAAGAAA 60.142 37.500 0.00 0.00 39.32 2.52
3399 3790 3.383185 ACGAACCAAATGGCTTCAAAGAA 59.617 39.130 0.00 0.00 39.32 2.52
3400 3791 2.955660 ACGAACCAAATGGCTTCAAAGA 59.044 40.909 0.00 0.00 39.32 2.52
3401 3792 3.369546 ACGAACCAAATGGCTTCAAAG 57.630 42.857 0.00 0.00 39.32 2.77
3402 3793 3.254657 CCTACGAACCAAATGGCTTCAAA 59.745 43.478 0.00 0.00 39.32 2.69
3403 3794 2.817258 CCTACGAACCAAATGGCTTCAA 59.183 45.455 0.00 0.00 39.32 2.69
3404 3795 2.039216 TCCTACGAACCAAATGGCTTCA 59.961 45.455 0.00 0.00 39.32 3.02
3405 3796 2.706890 TCCTACGAACCAAATGGCTTC 58.293 47.619 0.00 2.58 39.32 3.86
3406 3797 2.871096 TCCTACGAACCAAATGGCTT 57.129 45.000 0.00 0.00 39.32 4.35
3407 3798 2.871096 TTCCTACGAACCAAATGGCT 57.129 45.000 0.00 0.00 39.32 4.75
3408 3799 2.099098 CCATTCCTACGAACCAAATGGC 59.901 50.000 0.00 0.00 39.77 4.40
3409 3800 3.616219 TCCATTCCTACGAACCAAATGG 58.384 45.455 6.16 6.16 44.99 3.16
3410 3801 5.821204 GAATCCATTCCTACGAACCAAATG 58.179 41.667 0.00 0.00 0.00 2.32
3452 3843 4.640201 TCCAAAATGTGAAGGATCGATTCC 59.360 41.667 0.00 2.41 45.85 3.01
3453 3844 5.220931 CCTCCAAAATGTGAAGGATCGATTC 60.221 44.000 0.00 0.00 0.00 2.52
3454 3845 4.641989 CCTCCAAAATGTGAAGGATCGATT 59.358 41.667 0.00 0.00 0.00 3.34
3455 3846 4.080356 TCCTCCAAAATGTGAAGGATCGAT 60.080 41.667 0.00 0.00 0.00 3.59
3456 3847 3.263170 TCCTCCAAAATGTGAAGGATCGA 59.737 43.478 0.00 0.00 0.00 3.59
3457 3848 3.609853 TCCTCCAAAATGTGAAGGATCG 58.390 45.455 0.00 0.00 0.00 3.69
3458 3849 5.982890 TTTCCTCCAAAATGTGAAGGATC 57.017 39.130 0.00 0.00 0.00 3.36
3459 3850 6.745794 TTTTTCCTCCAAAATGTGAAGGAT 57.254 33.333 0.00 0.00 33.82 3.24
3506 3897 9.991906 CATTTGATGCATAGGATAGGAATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
3507 3898 9.370930 TCATTTGATGCATAGGATAGGAATTTT 57.629 29.630 0.00 0.00 0.00 1.82
3508 3899 8.800332 GTCATTTGATGCATAGGATAGGAATTT 58.200 33.333 0.00 0.00 0.00 1.82
3509 3900 7.946219 TGTCATTTGATGCATAGGATAGGAATT 59.054 33.333 0.00 0.00 0.00 2.17
3510 3901 7.464273 TGTCATTTGATGCATAGGATAGGAAT 58.536 34.615 0.00 0.00 0.00 3.01
3511 3902 6.840527 TGTCATTTGATGCATAGGATAGGAA 58.159 36.000 0.00 0.00 0.00 3.36
3512 3903 6.438186 TGTCATTTGATGCATAGGATAGGA 57.562 37.500 0.00 0.00 0.00 2.94
3513 3904 7.110810 AGATGTCATTTGATGCATAGGATAGG 58.889 38.462 0.00 0.00 30.80 2.57
3514 3905 7.280428 GGAGATGTCATTTGATGCATAGGATAG 59.720 40.741 0.00 0.00 30.80 2.08
3515 3906 7.037802 AGGAGATGTCATTTGATGCATAGGATA 60.038 37.037 0.00 0.00 30.80 2.59
3516 3907 5.944599 GGAGATGTCATTTGATGCATAGGAT 59.055 40.000 0.00 0.00 30.80 3.24
3517 3908 5.072736 AGGAGATGTCATTTGATGCATAGGA 59.927 40.000 0.00 0.00 30.80 2.94
3518 3909 5.314529 AGGAGATGTCATTTGATGCATAGG 58.685 41.667 0.00 0.00 30.80 2.57
3519 3910 6.711194 AGAAGGAGATGTCATTTGATGCATAG 59.289 38.462 0.00 0.00 30.80 2.23
3520 3911 6.598503 AGAAGGAGATGTCATTTGATGCATA 58.401 36.000 0.00 0.00 30.80 3.14
3521 3912 5.446860 AGAAGGAGATGTCATTTGATGCAT 58.553 37.500 0.00 0.00 32.43 3.96
3522 3913 4.851843 AGAAGGAGATGTCATTTGATGCA 58.148 39.130 0.00 0.00 0.00 3.96
3523 3914 5.124645 AGAGAAGGAGATGTCATTTGATGC 58.875 41.667 0.00 0.00 0.00 3.91
3524 3915 9.642327 CTATAGAGAAGGAGATGTCATTTGATG 57.358 37.037 0.00 0.00 0.00 3.07
3525 3916 8.814931 CCTATAGAGAAGGAGATGTCATTTGAT 58.185 37.037 0.00 0.00 36.08 2.57
3526 3917 8.007153 TCCTATAGAGAAGGAGATGTCATTTGA 58.993 37.037 0.00 0.00 38.24 2.69
3527 3918 8.187913 TCCTATAGAGAAGGAGATGTCATTTG 57.812 38.462 0.00 0.00 38.24 2.32
3528 3919 8.789767 TTCCTATAGAGAAGGAGATGTCATTT 57.210 34.615 0.00 0.00 43.90 2.32
3529 3920 8.971032 ATTCCTATAGAGAAGGAGATGTCATT 57.029 34.615 0.00 0.00 43.90 2.57
3530 3921 8.814931 CAATTCCTATAGAGAAGGAGATGTCAT 58.185 37.037 0.00 0.00 43.90 3.06
3531 3922 8.007153 TCAATTCCTATAGAGAAGGAGATGTCA 58.993 37.037 0.00 0.00 43.90 3.58
3532 3923 8.415950 TCAATTCCTATAGAGAAGGAGATGTC 57.584 38.462 0.00 0.00 43.90 3.06
3533 3924 8.231007 TCTCAATTCCTATAGAGAAGGAGATGT 58.769 37.037 19.97 2.35 43.90 3.06
3534 3925 8.648698 TCTCAATTCCTATAGAGAAGGAGATG 57.351 38.462 19.97 9.58 43.90 2.90
3535 3926 9.258629 CATCTCAATTCCTATAGAGAAGGAGAT 57.741 37.037 23.86 23.86 43.90 2.75
3536 3927 7.178274 GCATCTCAATTCCTATAGAGAAGGAGA 59.822 40.741 22.66 22.66 43.90 3.71
3537 3928 7.039152 TGCATCTCAATTCCTATAGAGAAGGAG 60.039 40.741 17.80 17.80 43.90 3.69
3538 3929 6.784473 TGCATCTCAATTCCTATAGAGAAGGA 59.216 38.462 0.00 5.06 40.19 3.36
3539 3930 7.002250 TGCATCTCAATTCCTATAGAGAAGG 57.998 40.000 0.00 1.28 40.19 3.46
3540 3931 8.095792 ACATGCATCTCAATTCCTATAGAGAAG 58.904 37.037 0.00 0.00 40.19 2.85
3541 3932 7.971201 ACATGCATCTCAATTCCTATAGAGAA 58.029 34.615 0.00 3.84 40.19 2.87
3542 3933 7.234166 TGACATGCATCTCAATTCCTATAGAGA 59.766 37.037 1.73 0.00 40.96 3.10
3543 3934 7.384477 TGACATGCATCTCAATTCCTATAGAG 58.616 38.462 1.73 0.00 0.00 2.43
3544 3935 7.307131 TGACATGCATCTCAATTCCTATAGA 57.693 36.000 1.73 0.00 0.00 1.98
3559 3950 6.589135 TCATAGAAAGTGAGATGACATGCAT 58.411 36.000 0.00 0.00 40.77 3.96
3560 3951 5.981174 TCATAGAAAGTGAGATGACATGCA 58.019 37.500 0.00 0.00 0.00 3.96
3561 3952 7.493743 AATCATAGAAAGTGAGATGACATGC 57.506 36.000 0.00 0.00 31.41 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.