Multiple sequence alignment - TraesCS1A01G268800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G268800 chr1A 100.000 2843 0 0 1 2843 463462697 463459855 0.000000e+00 5251.0
1 TraesCS1A01G268800 chr1A 91.473 129 10 1 2704 2832 463450681 463450554 2.910000e-40 176.0
2 TraesCS1A01G268800 chr1D 90.843 1507 88 24 477 1965 364625787 364624313 0.000000e+00 1973.0
3 TraesCS1A01G268800 chr1D 94.551 312 12 4 2046 2356 364624271 364623964 7.130000e-131 477.0
4 TraesCS1A01G268800 chr1D 90.071 282 12 6 1 279 364626618 364626350 4.510000e-93 351.0
5 TraesCS1A01G268800 chr1D 78.550 331 32 25 2510 2832 364623785 364623486 6.260000e-42 182.0
6 TraesCS1A01G268800 chr1D 92.437 119 9 0 2714 2832 364600722 364600604 1.350000e-38 171.0
7 TraesCS1A01G268800 chr1D 97.297 37 1 0 2352 2388 364624061 364624025 2.360000e-06 63.9
8 TraesCS1A01G268800 chr1B 88.617 1511 103 34 477 1945 487952027 487950544 0.000000e+00 1773.0
9 TraesCS1A01G268800 chr1B 93.891 311 14 3 2046 2355 487950467 487950161 5.550000e-127 464.0
10 TraesCS1A01G268800 chr1B 84.304 395 25 13 1 395 487952934 487952577 4.510000e-93 351.0
11 TraesCS1A01G268800 chr1B 84.527 349 22 14 2510 2832 487948515 487948173 1.640000e-82 316.0
12 TraesCS1A01G268800 chr1B 94.595 37 2 0 2352 2388 487950257 487950221 1.100000e-04 58.4
13 TraesCS1A01G268800 chr3D 86.024 508 54 16 997 1493 492131420 492131921 1.940000e-146 529.0
14 TraesCS1A01G268800 chr3A 94.161 274 16 0 996 1269 633922096 633922369 4.380000e-113 418.0
15 TraesCS1A01G268800 chr3A 92.086 139 11 0 1355 1493 633922468 633922606 2.230000e-46 196.0
16 TraesCS1A01G268800 chr3B 93.431 274 18 0 996 1269 653152046 653152319 9.480000e-110 407.0
17 TraesCS1A01G268800 chr3B 90.647 139 13 0 1355 1493 653152428 653152566 4.840000e-43 185.0
18 TraesCS1A01G268800 chr5D 91.729 266 22 0 1001 1266 425077485 425077220 1.240000e-98 370.0
19 TraesCS1A01G268800 chr5D 90.000 130 13 0 1358 1487 200501538 200501667 4.870000e-38 169.0
20 TraesCS1A01G268800 chr5B 91.353 266 23 0 1001 1266 514279627 514279362 5.790000e-97 364.0
21 TraesCS1A01G268800 chr5A 90.977 266 24 0 1001 1266 539093485 539093220 2.690000e-95 359.0
22 TraesCS1A01G268800 chr7D 88.192 271 29 3 997 1265 262698961 262698692 1.270000e-83 320.0
23 TraesCS1A01G268800 chr4B 89.865 148 13 2 1361 1507 100576910 100577056 3.740000e-44 189.0
24 TraesCS1A01G268800 chr4D 88.591 149 14 3 1361 1509 68053668 68053813 8.090000e-41 178.0
25 TraesCS1A01G268800 chr4A 88.591 149 14 3 1361 1509 517884848 517884993 8.090000e-41 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G268800 chr1A 463459855 463462697 2842 True 5251.00 5251 100.0000 1 2843 1 chr1A.!!$R2 2842
1 TraesCS1A01G268800 chr1D 364623486 364626618 3132 True 609.38 1973 90.2624 1 2832 5 chr1D.!!$R2 2831
2 TraesCS1A01G268800 chr1B 487948173 487952934 4761 True 592.48 1773 89.1868 1 2832 5 chr1B.!!$R1 2831
3 TraesCS1A01G268800 chr3D 492131420 492131921 501 False 529.00 529 86.0240 997 1493 1 chr3D.!!$F1 496
4 TraesCS1A01G268800 chr3A 633922096 633922606 510 False 307.00 418 93.1235 996 1493 2 chr3A.!!$F1 497
5 TraesCS1A01G268800 chr3B 653152046 653152566 520 False 296.00 407 92.0390 996 1493 2 chr3B.!!$F1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 288 0.031178 CATACGCACGTACCCCTACC 59.969 60.0 4.84 0.0 33.01 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2608 0.031449 CAAATTCGTGGGTTTGGCGT 59.969 50.0 0.0 0.0 32.96 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 0.328592 TATCCGATCCGAGCTAGCCT 59.671 55.000 12.13 0.00 0.00 4.58
175 179 0.743345 GATGCACGTCACCTAACCCC 60.743 60.000 0.00 0.00 0.00 4.95
194 198 4.016572 ACCCCAAGTCCTAAATTATTGCCT 60.017 41.667 0.00 0.00 0.00 4.75
195 199 4.584743 CCCCAAGTCCTAAATTATTGCCTC 59.415 45.833 0.00 0.00 0.00 4.70
196 200 4.584743 CCCAAGTCCTAAATTATTGCCTCC 59.415 45.833 0.00 0.00 0.00 4.30
197 201 5.449553 CCAAGTCCTAAATTATTGCCTCCT 58.550 41.667 0.00 0.00 0.00 3.69
198 202 5.893824 CCAAGTCCTAAATTATTGCCTCCTT 59.106 40.000 0.00 0.00 0.00 3.36
222 226 4.647399 CCTTCTAGACGATTTCCTCCTCTT 59.353 45.833 0.00 0.00 0.00 2.85
223 227 5.221165 CCTTCTAGACGATTTCCTCCTCTTC 60.221 48.000 0.00 0.00 0.00 2.87
224 228 5.118729 TCTAGACGATTTCCTCCTCTTCT 57.881 43.478 0.00 0.00 0.00 2.85
225 229 6.249911 TCTAGACGATTTCCTCCTCTTCTA 57.750 41.667 0.00 0.00 0.00 2.10
226 230 6.292923 TCTAGACGATTTCCTCCTCTTCTAG 58.707 44.000 0.00 6.71 39.71 2.43
228 232 3.301274 ACGATTTCCTCCTCTTCTAGGG 58.699 50.000 0.00 0.00 46.55 3.53
229 233 3.301274 CGATTTCCTCCTCTTCTAGGGT 58.699 50.000 0.00 0.00 46.55 4.34
230 234 3.068873 CGATTTCCTCCTCTTCTAGGGTG 59.931 52.174 0.00 0.00 46.55 4.61
231 235 3.562108 TTTCCTCCTCTTCTAGGGTGT 57.438 47.619 0.00 0.00 46.55 4.16
232 236 2.830651 TCCTCCTCTTCTAGGGTGTC 57.169 55.000 0.00 0.00 46.55 3.67
233 237 2.289467 TCCTCCTCTTCTAGGGTGTCT 58.711 52.381 0.00 0.00 46.55 3.41
234 238 2.024846 TCCTCCTCTTCTAGGGTGTCTG 60.025 54.545 0.00 0.00 46.55 3.51
235 239 1.754226 CTCCTCTTCTAGGGTGTCTGC 59.246 57.143 0.00 0.00 46.55 4.26
255 259 4.033776 TGCTGCACCTACTGCCCC 62.034 66.667 0.00 0.00 46.51 5.80
261 265 0.618981 GCACCTACTGCCCCTAAAGT 59.381 55.000 0.00 0.00 40.42 2.66
263 267 2.940083 GCACCTACTGCCCCTAAAGTTC 60.940 54.545 0.00 0.00 40.42 3.01
279 283 1.516821 TTCGCATACGCACGTACCC 60.517 57.895 4.84 0.00 39.84 3.69
281 285 2.497770 GCATACGCACGTACCCCT 59.502 61.111 4.84 0.00 38.36 4.79
282 286 1.735360 GCATACGCACGTACCCCTA 59.265 57.895 4.84 0.00 38.36 3.53
283 287 0.595825 GCATACGCACGTACCCCTAC 60.596 60.000 4.84 0.00 38.36 3.18
284 288 0.031178 CATACGCACGTACCCCTACC 59.969 60.000 4.84 0.00 33.01 3.18
285 289 0.395586 ATACGCACGTACCCCTACCA 60.396 55.000 4.84 0.00 33.01 3.25
286 290 1.312371 TACGCACGTACCCCTACCAC 61.312 60.000 0.00 0.00 0.00 4.16
287 291 2.638354 CGCACGTACCCCTACCACA 61.638 63.158 0.00 0.00 0.00 4.17
288 292 1.217244 GCACGTACCCCTACCACAG 59.783 63.158 0.00 0.00 0.00 3.66
289 293 1.252904 GCACGTACCCCTACCACAGA 61.253 60.000 0.00 0.00 0.00 3.41
303 307 1.543208 CCACAGAGTTGGTTGCTGCTA 60.543 52.381 0.00 0.00 33.03 3.49
311 315 3.507622 AGTTGGTTGCTGCTAATTCCTTC 59.492 43.478 0.00 0.00 0.00 3.46
312 316 2.446435 TGGTTGCTGCTAATTCCTTCC 58.554 47.619 0.00 0.00 0.00 3.46
313 317 2.041620 TGGTTGCTGCTAATTCCTTCCT 59.958 45.455 0.00 0.00 0.00 3.36
314 318 2.685388 GGTTGCTGCTAATTCCTTCCTC 59.315 50.000 0.00 0.00 0.00 3.71
335 339 1.499502 GCGTGCAGAAGCTTCTTCC 59.500 57.895 26.44 19.38 42.74 3.46
344 348 1.661112 GAAGCTTCTTCCATCGGTTCG 59.339 52.381 19.44 0.00 0.00 3.95
353 357 0.443869 CCATCGGTTCGAGCACTTTG 59.556 55.000 0.53 0.00 39.91 2.77
370 374 3.244181 ACTTTGCAAAATCCATCCCACAC 60.244 43.478 13.84 0.00 0.00 3.82
374 378 3.055963 TGCAAAATCCATCCCACACAATC 60.056 43.478 0.00 0.00 0.00 2.67
381 385 2.353011 CCATCCCACACAATCTTGCAAC 60.353 50.000 0.00 0.00 0.00 4.17
385 389 2.101249 CCCACACAATCTTGCAACAACT 59.899 45.455 0.00 0.00 0.00 3.16
388 392 3.968096 CACACAATCTTGCAACAACTACG 59.032 43.478 0.00 0.00 0.00 3.51
395 399 1.504359 TGCAACAACTACGTACCTGC 58.496 50.000 0.00 0.00 0.00 4.85
396 400 1.069513 TGCAACAACTACGTACCTGCT 59.930 47.619 0.00 0.00 0.00 4.24
398 402 2.665052 GCAACAACTACGTACCTGCTAC 59.335 50.000 0.00 0.00 0.00 3.58
405 409 2.177950 CGTACCTGCTACGTGGAGT 58.822 57.895 1.81 0.00 42.90 3.85
406 410 0.524862 CGTACCTGCTACGTGGAGTT 59.475 55.000 1.81 0.00 42.90 3.01
407 411 1.467035 CGTACCTGCTACGTGGAGTTC 60.467 57.143 1.81 0.00 42.90 3.01
408 412 0.806868 TACCTGCTACGTGGAGTTCG 59.193 55.000 1.81 0.00 31.70 3.95
409 413 1.153823 CCTGCTACGTGGAGTTCGG 60.154 63.158 1.81 0.00 31.70 4.30
410 414 1.153823 CTGCTACGTGGAGTTCGGG 60.154 63.158 1.81 0.00 0.00 5.14
411 415 1.592400 CTGCTACGTGGAGTTCGGGA 61.592 60.000 1.81 0.00 0.00 5.14
412 416 0.968901 TGCTACGTGGAGTTCGGGAT 60.969 55.000 1.81 0.00 0.00 3.85
414 418 1.390565 CTACGTGGAGTTCGGGATCT 58.609 55.000 0.00 0.00 0.00 2.75
415 419 1.065701 CTACGTGGAGTTCGGGATCTG 59.934 57.143 0.00 0.00 0.00 2.90
416 420 0.898789 ACGTGGAGTTCGGGATCTGT 60.899 55.000 0.00 0.00 0.00 3.41
417 421 0.246635 CGTGGAGTTCGGGATCTGTT 59.753 55.000 0.00 0.00 0.00 3.16
418 422 1.736032 CGTGGAGTTCGGGATCTGTTC 60.736 57.143 0.00 0.00 0.00 3.18
419 423 0.530744 TGGAGTTCGGGATCTGTTCG 59.469 55.000 0.00 0.00 0.00 3.95
420 424 0.179108 GGAGTTCGGGATCTGTTCGG 60.179 60.000 0.00 0.00 0.00 4.30
421 425 0.531200 GAGTTCGGGATCTGTTCGGT 59.469 55.000 0.00 0.00 0.00 4.69
422 426 0.531200 AGTTCGGGATCTGTTCGGTC 59.469 55.000 0.00 0.00 0.00 4.79
423 427 0.459759 GTTCGGGATCTGTTCGGTCC 60.460 60.000 0.00 0.00 0.00 4.46
424 428 0.901114 TTCGGGATCTGTTCGGTCCA 60.901 55.000 0.00 0.00 33.62 4.02
425 429 0.686441 TCGGGATCTGTTCGGTCCAT 60.686 55.000 0.00 0.00 33.62 3.41
426 430 0.178068 CGGGATCTGTTCGGTCCATT 59.822 55.000 0.00 0.00 33.62 3.16
427 431 1.406887 CGGGATCTGTTCGGTCCATTT 60.407 52.381 0.00 0.00 33.62 2.32
428 432 2.723273 GGGATCTGTTCGGTCCATTTT 58.277 47.619 0.00 0.00 33.62 1.82
429 433 2.683362 GGGATCTGTTCGGTCCATTTTC 59.317 50.000 0.00 0.00 33.62 2.29
430 434 2.351726 GGATCTGTTCGGTCCATTTTCG 59.648 50.000 0.00 0.00 32.23 3.46
434 438 0.800631 GTTCGGTCCATTTTCGGTCC 59.199 55.000 0.00 0.00 0.00 4.46
436 440 1.559368 TCGGTCCATTTTCGGTCCTA 58.441 50.000 0.00 0.00 32.58 2.94
450 454 2.673368 CGGTCCTAGCTTGAATTGACAC 59.327 50.000 0.00 0.00 0.00 3.67
451 455 2.673368 GGTCCTAGCTTGAATTGACACG 59.327 50.000 0.00 0.00 0.00 4.49
466 470 1.574428 CACGCTAGTGGTGTTTGCC 59.426 57.895 8.42 0.00 44.34 4.52
467 471 1.959226 ACGCTAGTGGTGTTTGCCG 60.959 57.895 8.42 0.00 34.69 5.69
468 472 1.959226 CGCTAGTGGTGTTTGCCGT 60.959 57.895 0.00 0.00 0.00 5.68
469 473 0.668096 CGCTAGTGGTGTTTGCCGTA 60.668 55.000 0.00 0.00 0.00 4.02
470 474 0.794473 GCTAGTGGTGTTTGCCGTAC 59.206 55.000 0.00 0.00 0.00 3.67
472 476 2.353011 GCTAGTGGTGTTTGCCGTACTA 60.353 50.000 0.00 0.00 0.00 1.82
475 1001 1.796459 GTGGTGTTTGCCGTACTACTG 59.204 52.381 0.00 0.00 0.00 2.74
499 1025 2.288666 GGGTGTATGTATGCCACTGTG 58.711 52.381 0.00 0.00 0.00 3.66
533 1059 2.481969 GGTTCCGTATTTCTACCCGTCC 60.482 54.545 0.00 0.00 0.00 4.79
551 1077 3.537795 TCCAACAGGGAGTACACTAGT 57.462 47.619 0.00 0.00 42.15 2.57
552 1078 3.428532 TCCAACAGGGAGTACACTAGTC 58.571 50.000 0.00 0.00 42.15 2.59
553 1079 2.163815 CCAACAGGGAGTACACTAGTCG 59.836 54.545 0.00 0.00 40.01 4.18
576 1102 0.245539 TACTCTACGCAGCACCAACC 59.754 55.000 0.00 0.00 0.00 3.77
583 1109 1.016130 CGCAGCACCAACCTCTACTG 61.016 60.000 0.00 0.00 0.00 2.74
593 1119 3.118956 CCAACCTCTACTGAACCTAGCTG 60.119 52.174 0.00 0.00 0.00 4.24
613 1139 1.230324 GCTCATAAAGGCGGACATCC 58.770 55.000 0.00 0.00 0.00 3.51
618 1144 0.539986 TAAAGGCGGACATCCTCCAC 59.460 55.000 9.59 0.00 43.32 4.02
677 1205 2.849294 TTAAAAATGCCCAGCCAACC 57.151 45.000 0.00 0.00 0.00 3.77
696 1224 2.162681 CCCTGCCTACCAAACTCAAAG 58.837 52.381 0.00 0.00 0.00 2.77
725 1253 1.597797 TACGTGCCAAGTACGGGAGG 61.598 60.000 10.40 5.32 45.17 4.30
726 1254 2.642254 CGTGCCAAGTACGGGAGGA 61.642 63.158 10.40 0.00 37.94 3.71
802 1336 2.131067 CAACCACCACCCAACCCAC 61.131 63.158 0.00 0.00 0.00 4.61
842 1377 1.071071 CCCCCGTCAAACTCACTACAA 59.929 52.381 0.00 0.00 0.00 2.41
936 1477 3.087666 GCTCTCCCCGCCTCAGAAG 62.088 68.421 0.00 0.00 0.00 2.85
940 1481 4.479993 CCCCGCCTCAGAAGCAGG 62.480 72.222 0.00 0.00 0.00 4.85
941 1482 3.393970 CCCGCCTCAGAAGCAGGA 61.394 66.667 4.10 0.00 31.91 3.86
978 1519 3.085947 CTGCCCTGCCCTGCTCTA 61.086 66.667 0.00 0.00 0.00 2.43
979 1520 3.085947 TGCCCTGCCCTGCTCTAG 61.086 66.667 0.00 0.00 0.00 2.43
980 1521 2.765807 GCCCTGCCCTGCTCTAGA 60.766 66.667 0.00 0.00 0.00 2.43
981 1522 2.806009 GCCCTGCCCTGCTCTAGAG 61.806 68.421 15.85 15.85 0.00 2.43
983 1524 1.398958 CCCTGCCCTGCTCTAGAGTC 61.399 65.000 20.75 13.31 0.00 3.36
1218 1790 3.550656 GGCAACTTCACCGACGAG 58.449 61.111 0.00 0.00 0.00 4.18
1221 1793 0.599204 GCAACTTCACCGACGAGGAA 60.599 55.000 8.56 0.00 45.00 3.36
1279 1852 0.824759 CAAGTAAGCCGCTCTACCCT 59.175 55.000 0.00 0.00 0.00 4.34
1283 1856 0.394762 TAAGCCGCTCTACCCTTCGA 60.395 55.000 0.00 0.00 0.00 3.71
1284 1857 1.043673 AAGCCGCTCTACCCTTCGAT 61.044 55.000 0.00 0.00 0.00 3.59
1285 1858 1.007154 GCCGCTCTACCCTTCGATC 60.007 63.158 0.00 0.00 0.00 3.69
1286 1859 1.283181 CCGCTCTACCCTTCGATCG 59.717 63.158 9.36 9.36 0.00 3.69
1287 1860 1.164662 CCGCTCTACCCTTCGATCGA 61.165 60.000 15.15 15.15 0.00 3.59
1288 1861 0.875728 CGCTCTACCCTTCGATCGAT 59.124 55.000 20.18 6.40 0.00 3.59
1289 1862 1.135916 CGCTCTACCCTTCGATCGATC 60.136 57.143 20.18 15.68 0.00 3.69
1290 1863 1.880675 GCTCTACCCTTCGATCGATCA 59.119 52.381 24.40 3.69 0.00 2.92
1297 1870 1.124462 CTTCGATCGATCAACCTCGC 58.876 55.000 24.40 0.00 38.52 5.03
1307 1880 4.719369 AACCTCGCCGACGTGCTC 62.719 66.667 0.00 0.00 41.18 4.26
1322 1898 3.811514 CGTGCTCGTCCTGTATATAGTG 58.188 50.000 0.00 0.00 0.00 2.74
1323 1899 3.566523 GTGCTCGTCCTGTATATAGTGC 58.433 50.000 0.00 0.00 0.00 4.40
1575 2198 4.015406 ACGATGTTCGCCCTGCCA 62.015 61.111 0.00 0.00 45.12 4.92
1593 2216 1.898574 AACAAAGCAGCCTCCCGTG 60.899 57.895 0.00 0.00 0.00 4.94
1595 2218 3.249189 AAAGCAGCCTCCCGTGGA 61.249 61.111 0.00 0.00 0.00 4.02
1596 2219 2.606587 AAAGCAGCCTCCCGTGGAT 61.607 57.895 0.00 0.00 0.00 3.41
1597 2220 2.142292 AAAGCAGCCTCCCGTGGATT 62.142 55.000 0.00 0.00 0.00 3.01
1598 2221 2.514824 GCAGCCTCCCGTGGATTC 60.515 66.667 0.00 0.00 0.00 2.52
1599 2222 2.190578 CAGCCTCCCGTGGATTCC 59.809 66.667 0.00 0.00 0.00 3.01
1602 2225 3.108288 GCCTCCCGTGGATTCCTCC 62.108 68.421 3.95 0.00 42.45 4.30
1605 2228 1.382695 TCCCGTGGATTCCTCCTCC 60.383 63.158 3.95 0.00 42.59 4.30
1665 2291 2.876368 GATGCCCCGACCTGAACCTG 62.876 65.000 0.00 0.00 0.00 4.00
1677 2303 0.178955 TGAACCTGGACCTGTCGGTA 60.179 55.000 0.00 0.00 45.73 4.02
1893 2519 2.584791 CACAGCAATTTGTAAGACGGC 58.415 47.619 0.00 0.00 0.00 5.68
1910 2536 0.170339 GGCGAATTTTTCCACCTCCG 59.830 55.000 0.00 0.00 0.00 4.63
1920 2546 4.320456 CACCTCCGCAGCACCACT 62.320 66.667 0.00 0.00 0.00 4.00
1928 2554 3.333414 CAGCACCACTGTCCAACG 58.667 61.111 0.00 0.00 41.86 4.10
1973 2611 6.417191 TCTGTTCATATTTTCCTTGTACGC 57.583 37.500 0.00 0.00 0.00 4.42
1974 2612 5.353123 TCTGTTCATATTTTCCTTGTACGCC 59.647 40.000 0.00 0.00 0.00 5.68
1976 2614 5.473846 TGTTCATATTTTCCTTGTACGCCAA 59.526 36.000 0.00 0.00 0.00 4.52
1977 2615 6.016192 TGTTCATATTTTCCTTGTACGCCAAA 60.016 34.615 0.00 0.00 31.20 3.28
1978 2616 5.945155 TCATATTTTCCTTGTACGCCAAAC 58.055 37.500 0.00 0.00 31.20 2.93
1979 2617 3.653539 ATTTTCCTTGTACGCCAAACC 57.346 42.857 0.00 0.00 31.20 3.27
1980 2618 1.320507 TTTCCTTGTACGCCAAACCC 58.679 50.000 0.00 0.00 31.20 4.11
1981 2619 0.183014 TTCCTTGTACGCCAAACCCA 59.817 50.000 0.00 0.00 31.20 4.51
1982 2620 0.535553 TCCTTGTACGCCAAACCCAC 60.536 55.000 0.00 0.00 31.20 4.61
1983 2621 1.572447 CTTGTACGCCAAACCCACG 59.428 57.895 0.00 0.00 31.20 4.94
1984 2622 0.881159 CTTGTACGCCAAACCCACGA 60.881 55.000 0.00 0.00 31.20 4.35
1998 2636 2.028020 ACCCACGAATTTGTCCTCTCTC 60.028 50.000 0.00 0.00 0.00 3.20
2001 2639 3.194542 CCACGAATTTGTCCTCTCTCTCT 59.805 47.826 0.00 0.00 0.00 3.10
2004 2642 4.398044 ACGAATTTGTCCTCTCTCTCTCTC 59.602 45.833 0.00 0.00 0.00 3.20
2005 2643 4.397730 CGAATTTGTCCTCTCTCTCTCTCA 59.602 45.833 0.00 0.00 0.00 3.27
2006 2644 5.650543 GAATTTGTCCTCTCTCTCTCTCAC 58.349 45.833 0.00 0.00 0.00 3.51
2007 2645 3.797559 TTGTCCTCTCTCTCTCTCACA 57.202 47.619 0.00 0.00 0.00 3.58
2008 2646 3.066291 TGTCCTCTCTCTCTCTCACAC 57.934 52.381 0.00 0.00 0.00 3.82
2009 2647 2.373502 TGTCCTCTCTCTCTCTCACACA 59.626 50.000 0.00 0.00 0.00 3.72
2010 2648 2.747446 GTCCTCTCTCTCTCTCACACAC 59.253 54.545 0.00 0.00 0.00 3.82
2011 2649 2.373502 TCCTCTCTCTCTCTCACACACA 59.626 50.000 0.00 0.00 0.00 3.72
2012 2650 2.487762 CCTCTCTCTCTCTCACACACAC 59.512 54.545 0.00 0.00 0.00 3.82
2013 2651 3.145286 CTCTCTCTCTCTCACACACACA 58.855 50.000 0.00 0.00 0.00 3.72
2014 2652 2.881513 TCTCTCTCTCTCACACACACAC 59.118 50.000 0.00 0.00 0.00 3.82
2015 2653 2.620585 CTCTCTCTCTCACACACACACA 59.379 50.000 0.00 0.00 0.00 3.72
2016 2654 2.620585 TCTCTCTCTCACACACACACAG 59.379 50.000 0.00 0.00 0.00 3.66
2017 2655 2.620585 CTCTCTCTCACACACACACAGA 59.379 50.000 0.00 0.00 0.00 3.41
2018 2656 2.359214 TCTCTCTCACACACACACAGAC 59.641 50.000 0.00 0.00 0.00 3.51
2019 2657 1.065551 TCTCTCACACACACACAGACG 59.934 52.381 0.00 0.00 0.00 4.18
2020 2658 0.527600 TCTCACACACACACAGACGC 60.528 55.000 0.00 0.00 0.00 5.19
2021 2659 0.805711 CTCACACACACACAGACGCA 60.806 55.000 0.00 0.00 0.00 5.24
2022 2660 0.390472 TCACACACACACAGACGCAA 60.390 50.000 0.00 0.00 0.00 4.85
2023 2661 0.445829 CACACACACACAGACGCAAA 59.554 50.000 0.00 0.00 0.00 3.68
2024 2662 1.135831 CACACACACACAGACGCAAAA 60.136 47.619 0.00 0.00 0.00 2.44
2025 2663 1.742831 ACACACACACAGACGCAAAAT 59.257 42.857 0.00 0.00 0.00 1.82
2026 2664 2.110990 CACACACACAGACGCAAAATG 58.889 47.619 0.00 0.00 0.00 2.32
2027 2665 1.065401 ACACACACAGACGCAAAATGG 59.935 47.619 0.00 0.00 0.00 3.16
2028 2666 1.333308 CACACACAGACGCAAAATGGA 59.667 47.619 0.00 0.00 0.00 3.41
2029 2667 1.603802 ACACACAGACGCAAAATGGAG 59.396 47.619 0.00 0.00 0.00 3.86
2030 2668 1.603802 CACACAGACGCAAAATGGAGT 59.396 47.619 0.00 0.00 0.00 3.85
2031 2669 2.805671 CACACAGACGCAAAATGGAGTA 59.194 45.455 0.00 0.00 0.00 2.59
2032 2670 2.806244 ACACAGACGCAAAATGGAGTAC 59.194 45.455 0.00 0.00 0.00 2.73
2033 2671 3.067106 CACAGACGCAAAATGGAGTACT 58.933 45.455 0.00 0.00 0.00 2.73
2036 2674 5.005779 CACAGACGCAAAATGGAGTACTATC 59.994 44.000 0.00 0.00 0.00 2.08
2039 2677 6.313905 CAGACGCAAAATGGAGTACTATCTTT 59.686 38.462 0.00 0.00 0.00 2.52
2043 2681 9.174166 ACGCAAAATGGAGTACTATCTTTTATT 57.826 29.630 0.00 0.00 0.00 1.40
2044 2682 9.651718 CGCAAAATGGAGTACTATCTTTTATTC 57.348 33.333 0.00 0.00 0.00 1.75
2056 2694 4.864704 TCTTTTATTCTTGGTTGGTGCC 57.135 40.909 0.00 0.00 0.00 5.01
2058 2696 1.540267 TTATTCTTGGTTGGTGCCGG 58.460 50.000 0.00 0.00 0.00 6.13
2061 2699 1.388065 TTCTTGGTTGGTGCCGGTTG 61.388 55.000 1.90 0.00 0.00 3.77
2068 2706 3.601685 GGTGCCGGTTGTGTTGGG 61.602 66.667 1.90 0.00 0.00 4.12
2069 2707 2.831284 GTGCCGGTTGTGTTGGGT 60.831 61.111 1.90 0.00 0.00 4.51
2105 2743 2.888834 AATGTGACAAAGGTTGGTGC 57.111 45.000 0.00 0.00 34.12 5.01
2197 2835 1.841663 CGGTGTTCCTTTCCTGTGCG 61.842 60.000 0.00 0.00 0.00 5.34
2272 2910 2.558378 GGTAGGTATTTCGGCTTGTCC 58.442 52.381 0.00 0.00 0.00 4.02
2347 2985 2.545526 CTCGTATGGCCAAACTATGCTG 59.454 50.000 10.96 0.00 0.00 4.41
2356 2994 5.125417 TGGCCAAACTATGCTGTTCTATTTC 59.875 40.000 0.61 0.00 0.00 2.17
2357 2995 5.266242 GCCAAACTATGCTGTTCTATTTCG 58.734 41.667 0.00 0.00 0.00 3.46
2358 2996 5.730568 GCCAAACTATGCTGTTCTATTTCGG 60.731 44.000 0.00 0.00 0.00 4.30
2359 2997 5.266242 CAAACTATGCTGTTCTATTTCGGC 58.734 41.667 0.00 0.00 36.59 5.54
2360 2998 4.408182 ACTATGCTGTTCTATTTCGGCT 57.592 40.909 0.00 0.00 36.94 5.52
2362 3000 4.572389 ACTATGCTGTTCTATTTCGGCTTG 59.428 41.667 0.00 0.00 36.94 4.01
2364 3002 2.742053 TGCTGTTCTATTTCGGCTTGTC 59.258 45.455 0.00 0.00 36.94 3.18
2365 3003 3.003480 GCTGTTCTATTTCGGCTTGTCT 58.997 45.455 0.00 0.00 33.68 3.41
2366 3004 3.181516 GCTGTTCTATTTCGGCTTGTCTG 60.182 47.826 0.00 0.00 33.68 3.51
2367 3005 3.997021 CTGTTCTATTTCGGCTTGTCTGT 59.003 43.478 0.00 0.00 0.00 3.41
2368 3006 3.745975 TGTTCTATTTCGGCTTGTCTGTG 59.254 43.478 0.00 0.00 0.00 3.66
2369 3007 3.678056 TCTATTTCGGCTTGTCTGTGT 57.322 42.857 0.00 0.00 0.00 3.72
2373 3011 0.380378 TTCGGCTTGTCTGTGTTTGC 59.620 50.000 0.00 0.00 0.00 3.68
2374 3012 0.746204 TCGGCTTGTCTGTGTTTGCA 60.746 50.000 0.00 0.00 0.00 4.08
2375 3013 0.592247 CGGCTTGTCTGTGTTTGCAC 60.592 55.000 0.00 0.00 45.44 4.57
2376 3014 0.740737 GGCTTGTCTGTGTTTGCACT 59.259 50.000 0.00 0.00 45.44 4.40
2377 3015 1.268743 GGCTTGTCTGTGTTTGCACTC 60.269 52.381 0.00 0.00 45.44 3.51
2378 3016 1.268743 GCTTGTCTGTGTTTGCACTCC 60.269 52.381 0.00 0.00 45.44 3.85
2379 3017 2.016318 CTTGTCTGTGTTTGCACTCCA 58.984 47.619 0.00 0.00 45.44 3.86
2381 3019 1.339535 TGTCTGTGTTTGCACTCCACA 60.340 47.619 10.74 10.74 45.44 4.17
2382 3020 1.742831 GTCTGTGTTTGCACTCCACAA 59.257 47.619 11.93 3.41 45.44 3.33
2383 3021 2.163412 GTCTGTGTTTGCACTCCACAAA 59.837 45.455 11.93 0.00 45.44 2.83
2385 3023 3.446873 TCTGTGTTTGCACTCCACAAATT 59.553 39.130 11.93 0.00 45.44 1.82
2386 3024 3.779759 TGTGTTTGCACTCCACAAATTC 58.220 40.909 9.21 0.00 45.44 2.17
2388 3026 3.798337 GTGTTTGCACTCCACAAATTCTG 59.202 43.478 5.05 0.00 42.13 3.02
2391 3029 0.730494 GCACTCCACAAATTCTGCGC 60.730 55.000 0.00 0.00 0.00 6.09
2392 3030 0.877071 CACTCCACAAATTCTGCGCT 59.123 50.000 9.73 0.00 0.00 5.92
2393 3031 1.267806 CACTCCACAAATTCTGCGCTT 59.732 47.619 9.73 0.00 0.00 4.68
2394 3032 1.537202 ACTCCACAAATTCTGCGCTTC 59.463 47.619 9.73 0.00 0.00 3.86
2395 3033 1.536766 CTCCACAAATTCTGCGCTTCA 59.463 47.619 9.73 0.00 0.00 3.02
2396 3034 1.952990 TCCACAAATTCTGCGCTTCAA 59.047 42.857 9.73 0.00 0.00 2.69
2398 3036 3.005684 TCCACAAATTCTGCGCTTCAAAT 59.994 39.130 9.73 0.00 0.00 2.32
2399 3037 3.122278 CCACAAATTCTGCGCTTCAAATG 59.878 43.478 9.73 4.04 0.00 2.32
2400 3038 3.737266 CACAAATTCTGCGCTTCAAATGT 59.263 39.130 9.73 4.73 0.00 2.71
2401 3039 4.209703 CACAAATTCTGCGCTTCAAATGTT 59.790 37.500 9.73 0.00 0.00 2.71
2403 3041 4.977741 AATTCTGCGCTTCAAATGTTTG 57.022 36.364 9.73 0.00 39.48 2.93
2404 3042 1.769733 TCTGCGCTTCAAATGTTTGC 58.230 45.000 9.73 0.00 38.05 3.68
2405 3043 1.066757 TCTGCGCTTCAAATGTTTGCA 59.933 42.857 9.73 0.00 38.05 4.08
2406 3044 1.190763 CTGCGCTTCAAATGTTTGCAC 59.809 47.619 9.73 0.00 38.05 4.57
2407 3045 0.159345 GCGCTTCAAATGTTTGCACG 59.841 50.000 0.00 5.69 38.05 5.34
2408 3046 0.159345 CGCTTCAAATGTTTGCACGC 59.841 50.000 0.66 2.99 38.05 5.34
2409 3047 1.207390 GCTTCAAATGTTTGCACGCA 58.793 45.000 0.66 0.00 38.05 5.24
2411 3049 2.159934 GCTTCAAATGTTTGCACGCATC 60.160 45.455 3.05 0.00 38.05 3.91
2414 3052 3.651206 TCAAATGTTTGCACGCATCAAT 58.349 36.364 3.05 0.00 38.05 2.57
2416 3054 1.898938 ATGTTTGCACGCATCAATCG 58.101 45.000 0.00 0.00 0.00 3.34
2417 3055 0.871057 TGTTTGCACGCATCAATCGA 59.129 45.000 0.00 0.00 0.00 3.59
2434 3072 6.834876 TCAATCGATGAACATTGCTATATGC 58.165 36.000 0.00 0.00 37.36 3.14
2435 3073 4.908966 TCGATGAACATTGCTATATGCG 57.091 40.909 0.00 0.00 46.63 4.73
2436 3074 3.123453 TCGATGAACATTGCTATATGCGC 59.877 43.478 0.00 0.00 46.63 6.09
2438 3076 3.607422 TGAACATTGCTATATGCGCAC 57.393 42.857 14.90 0.00 46.63 5.34
2439 3077 2.290367 TGAACATTGCTATATGCGCACC 59.710 45.455 14.90 0.00 46.63 5.01
2440 3078 2.260844 ACATTGCTATATGCGCACCT 57.739 45.000 14.90 5.30 46.63 4.00
2441 3079 2.575532 ACATTGCTATATGCGCACCTT 58.424 42.857 14.90 0.00 46.63 3.50
2442 3080 2.549754 ACATTGCTATATGCGCACCTTC 59.450 45.455 14.90 1.36 46.63 3.46
2443 3081 2.323968 TTGCTATATGCGCACCTTCA 57.676 45.000 14.90 4.47 46.63 3.02
2445 3083 2.212652 TGCTATATGCGCACCTTCAAG 58.787 47.619 14.90 5.92 46.63 3.02
2446 3084 2.213499 GCTATATGCGCACCTTCAAGT 58.787 47.619 14.90 0.00 0.00 3.16
2448 3086 3.807622 GCTATATGCGCACCTTCAAGTTA 59.192 43.478 14.90 0.00 0.00 2.24
2449 3087 4.452455 GCTATATGCGCACCTTCAAGTTAT 59.548 41.667 14.90 5.87 0.00 1.89
2450 3088 4.818534 ATATGCGCACCTTCAAGTTATG 57.181 40.909 14.90 0.00 0.00 1.90
2452 3090 2.499197 TGCGCACCTTCAAGTTATGAA 58.501 42.857 5.66 0.00 45.71 2.57
2465 3103 7.447374 TCAAGTTATGAAATGAAATCCGTGT 57.553 32.000 0.00 0.00 34.30 4.49
2466 3104 7.304735 TCAAGTTATGAAATGAAATCCGTGTG 58.695 34.615 0.00 0.00 34.30 3.82
2467 3105 6.194796 AGTTATGAAATGAAATCCGTGTGG 57.805 37.500 0.00 0.00 0.00 4.17
2468 3106 5.125417 AGTTATGAAATGAAATCCGTGTGGG 59.875 40.000 0.00 0.00 35.24 4.61
2477 3115 3.623848 TCCGTGTGGGAATGTCAAG 57.376 52.632 0.00 0.00 43.62 3.02
2478 3116 0.036164 TCCGTGTGGGAATGTCAAGG 59.964 55.000 0.00 0.00 43.62 3.61
2501 4605 4.313020 AGGAGATGGTCTTGAAAGCAAT 57.687 40.909 0.00 0.00 32.68 3.56
2507 4611 5.416952 AGATGGTCTTGAAAGCAATACAAGG 59.583 40.000 0.00 0.00 40.60 3.61
2518 4657 4.256920 AGCAATACAAGGTGAGTAAGCAG 58.743 43.478 0.00 0.00 32.43 4.24
2526 4665 1.135286 GGTGAGTAAGCAGGCATTTGC 60.135 52.381 0.00 0.00 44.41 3.68
2537 4676 2.801996 CATTTGCGTGTGCCTGCG 60.802 61.111 0.00 0.00 41.78 5.18
2551 4694 1.579429 CTGCGTTGTTTGGTAGCCC 59.421 57.895 0.00 0.00 0.00 5.19
2567 4710 3.194005 AGCCCAATCTTACATGGTACG 57.806 47.619 0.00 0.00 34.79 3.67
2568 4711 2.504175 AGCCCAATCTTACATGGTACGT 59.496 45.455 0.00 0.00 34.79 3.57
2569 4712 3.707611 AGCCCAATCTTACATGGTACGTA 59.292 43.478 0.00 0.00 34.79 3.57
2570 4713 3.805971 GCCCAATCTTACATGGTACGTAC 59.194 47.826 17.56 17.56 34.79 3.67
2571 4714 4.681244 GCCCAATCTTACATGGTACGTACA 60.681 45.833 26.02 13.22 34.79 2.90
2572 4715 4.807304 CCCAATCTTACATGGTACGTACAC 59.193 45.833 26.02 15.90 34.79 2.90
2632 4775 3.282745 GAGACTGTCCTGCGCCGAA 62.283 63.158 4.18 0.00 0.00 4.30
2645 4788 1.441016 GCCGAAACAAAGCGCTCAG 60.441 57.895 12.06 9.23 0.00 3.35
2670 4825 1.801178 GAACACTGAACTGGTAGCAGC 59.199 52.381 21.58 7.20 33.03 5.25
2694 4853 1.462731 GGTGGATTTGGTGCAGTGCA 61.463 55.000 15.37 15.37 35.60 4.57
2702 4861 3.664495 GTGCAGTGCAGCAGATGT 58.336 55.556 20.42 0.00 46.69 3.06
2703 4862 2.845019 GTGCAGTGCAGCAGATGTA 58.155 52.632 20.42 0.00 46.69 2.29
2704 4863 0.725686 GTGCAGTGCAGCAGATGTAG 59.274 55.000 20.42 0.00 46.69 2.74
2705 4864 0.322648 TGCAGTGCAGCAGATGTAGT 59.677 50.000 15.37 0.00 40.11 2.73
2706 4865 0.725686 GCAGTGCAGCAGATGTAGTG 59.274 55.000 11.09 7.19 45.05 2.74
2707 4866 1.673923 GCAGTGCAGCAGATGTAGTGA 60.674 52.381 15.03 0.00 45.07 3.41
2709 4868 1.898472 AGTGCAGCAGATGTAGTGAGT 59.102 47.619 0.00 0.00 0.00 3.41
2737 4904 3.054875 ACTTTGCATATCCAGAGCTCACA 60.055 43.478 17.77 0.00 0.00 3.58
2738 4905 2.904697 TGCATATCCAGAGCTCACAG 57.095 50.000 17.77 5.14 0.00 3.66
2768 4939 6.577055 GCGCCATTTCTTTTGTTTTATTTTCC 59.423 34.615 0.00 0.00 0.00 3.13
2769 4940 7.075121 CGCCATTTCTTTTGTTTTATTTTCCC 58.925 34.615 0.00 0.00 0.00 3.97
2773 4944 4.633175 TCTTTTGTTTTATTTTCCCGGGC 58.367 39.130 18.49 0.00 0.00 6.13
2835 5006 1.843992 GCCAAATATGCGAGCCTTTG 58.156 50.000 0.00 0.99 0.00 2.77
2836 5007 1.843992 CCAAATATGCGAGCCTTTGC 58.156 50.000 0.00 0.00 37.95 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.601166 GGGTCAAAACTAACGTGCCT 58.399 50.000 0.00 0.00 0.00 4.75
49 50 0.988832 AGAATCCGGTAAAGGTGCCA 59.011 50.000 0.00 0.00 0.00 4.92
112 113 2.818274 GAGTTTGGTAGCGGCCCG 60.818 66.667 0.00 0.00 0.00 6.13
117 118 2.642139 TTAGGTCGAGTTTGGTAGCG 57.358 50.000 0.00 0.00 0.00 4.26
175 179 6.039829 GGAAGGAGGCAATAATTTAGGACTTG 59.960 42.308 0.00 0.00 0.00 3.16
194 198 4.611367 AGGAAATCGTCTAGAAGGAAGGA 58.389 43.478 5.81 0.00 0.00 3.36
195 199 4.202172 GGAGGAAATCGTCTAGAAGGAAGG 60.202 50.000 5.81 0.00 0.00 3.46
196 200 4.647399 AGGAGGAAATCGTCTAGAAGGAAG 59.353 45.833 5.81 0.00 0.00 3.46
197 201 4.611367 AGGAGGAAATCGTCTAGAAGGAA 58.389 43.478 5.81 0.00 0.00 3.36
198 202 4.208746 GAGGAGGAAATCGTCTAGAAGGA 58.791 47.826 5.81 1.62 39.30 3.36
222 226 2.646175 GCACGGCAGACACCCTAGA 61.646 63.158 0.00 0.00 0.00 2.43
223 227 2.125512 GCACGGCAGACACCCTAG 60.126 66.667 0.00 0.00 0.00 3.02
224 228 2.603473 AGCACGGCAGACACCCTA 60.603 61.111 0.00 0.00 0.00 3.53
225 229 4.320456 CAGCACGGCAGACACCCT 62.320 66.667 0.00 0.00 0.00 4.34
228 232 4.017877 GTGCAGCACGGCAGACAC 62.018 66.667 10.47 0.80 45.96 3.67
230 234 3.589654 TAGGTGCAGCACGGCAGAC 62.590 63.158 19.42 4.29 45.96 3.51
231 235 3.310307 TAGGTGCAGCACGGCAGA 61.310 61.111 19.42 0.00 45.96 4.26
232 236 3.121030 GTAGGTGCAGCACGGCAG 61.121 66.667 19.42 0.00 45.96 4.85
233 237 3.625897 AGTAGGTGCAGCACGGCA 61.626 61.111 19.42 3.88 42.53 5.69
234 238 3.121030 CAGTAGGTGCAGCACGGC 61.121 66.667 19.42 11.39 34.83 5.68
255 259 1.652124 ACGTGCGTATGCGAACTTTAG 59.348 47.619 12.74 0.00 44.25 1.85
283 287 0.820891 AGCAGCAACCAACTCTGTGG 60.821 55.000 0.00 0.00 44.92 4.17
284 288 1.882912 TAGCAGCAACCAACTCTGTG 58.117 50.000 0.00 0.00 0.00 3.66
285 289 2.638480 TTAGCAGCAACCAACTCTGT 57.362 45.000 0.00 0.00 0.00 3.41
286 290 3.119708 GGAATTAGCAGCAACCAACTCTG 60.120 47.826 0.00 0.00 0.00 3.35
287 291 3.084786 GGAATTAGCAGCAACCAACTCT 58.915 45.455 0.00 0.00 0.00 3.24
288 292 3.084786 AGGAATTAGCAGCAACCAACTC 58.915 45.455 0.00 0.00 0.00 3.01
289 293 3.160679 AGGAATTAGCAGCAACCAACT 57.839 42.857 0.00 0.00 0.00 3.16
298 302 1.811941 GCGGGAGGAAGGAATTAGCAG 60.812 57.143 0.00 0.00 0.00 4.24
303 307 1.078426 CACGCGGGAGGAAGGAATT 60.078 57.895 12.47 0.00 0.00 2.17
312 316 4.749310 AGCTTCTGCACGCGGGAG 62.749 66.667 15.48 11.51 42.74 4.30
313 317 4.314440 AAGCTTCTGCACGCGGGA 62.314 61.111 15.48 0.00 42.74 5.14
314 318 3.793144 GAAGCTTCTGCACGCGGG 61.793 66.667 19.44 7.92 42.74 6.13
335 339 0.179215 GCAAAGTGCTCGAACCGATG 60.179 55.000 0.00 0.00 40.96 3.84
344 348 3.256558 GGATGGATTTTGCAAAGTGCTC 58.743 45.455 22.99 17.46 45.31 4.26
353 357 3.196254 AGATTGTGTGGGATGGATTTTGC 59.804 43.478 0.00 0.00 0.00 3.68
355 359 4.322953 GCAAGATTGTGTGGGATGGATTTT 60.323 41.667 0.00 0.00 0.00 1.82
365 369 3.441496 AGTTGTTGCAAGATTGTGTGG 57.559 42.857 0.00 0.00 0.00 4.17
370 374 4.451096 AGGTACGTAGTTGTTGCAAGATTG 59.549 41.667 0.00 0.00 37.78 2.67
374 378 2.096417 GCAGGTACGTAGTTGTTGCAAG 60.096 50.000 0.00 0.00 37.78 4.01
388 392 1.467035 CGAACTCCACGTAGCAGGTAC 60.467 57.143 0.00 0.00 0.00 3.34
395 399 1.065701 CAGATCCCGAACTCCACGTAG 59.934 57.143 0.00 0.00 0.00 3.51
396 400 1.100510 CAGATCCCGAACTCCACGTA 58.899 55.000 0.00 0.00 0.00 3.57
398 402 0.246635 AACAGATCCCGAACTCCACG 59.753 55.000 0.00 0.00 0.00 4.94
399 403 1.736032 CGAACAGATCCCGAACTCCAC 60.736 57.143 0.00 0.00 0.00 4.02
400 404 0.530744 CGAACAGATCCCGAACTCCA 59.469 55.000 0.00 0.00 0.00 3.86
404 408 0.459759 GGACCGAACAGATCCCGAAC 60.460 60.000 0.00 0.00 0.00 3.95
405 409 0.901114 TGGACCGAACAGATCCCGAA 60.901 55.000 0.00 0.00 28.24 4.30
406 410 0.686441 ATGGACCGAACAGATCCCGA 60.686 55.000 0.00 0.00 28.24 5.14
407 411 0.178068 AATGGACCGAACAGATCCCG 59.822 55.000 0.00 0.00 28.24 5.14
408 412 2.420058 AAATGGACCGAACAGATCCC 57.580 50.000 0.00 0.00 28.24 3.85
409 413 2.351726 CGAAAATGGACCGAACAGATCC 59.648 50.000 0.00 0.00 31.04 3.36
410 414 2.351726 CCGAAAATGGACCGAACAGATC 59.648 50.000 0.00 0.00 0.00 2.75
411 415 2.290071 ACCGAAAATGGACCGAACAGAT 60.290 45.455 0.00 0.00 0.00 2.90
412 416 1.071071 ACCGAAAATGGACCGAACAGA 59.929 47.619 0.00 0.00 0.00 3.41
414 418 1.515081 GACCGAAAATGGACCGAACA 58.485 50.000 0.00 0.00 0.00 3.18
415 419 0.800631 GGACCGAAAATGGACCGAAC 59.199 55.000 0.00 0.00 34.22 3.95
416 420 0.688487 AGGACCGAAAATGGACCGAA 59.312 50.000 0.00 0.00 46.73 4.30
417 421 1.479323 CTAGGACCGAAAATGGACCGA 59.521 52.381 0.00 0.00 46.73 4.69
418 422 1.935933 CTAGGACCGAAAATGGACCG 58.064 55.000 0.00 0.00 46.73 4.79
419 423 1.209747 AGCTAGGACCGAAAATGGACC 59.790 52.381 0.00 0.00 43.19 4.46
420 424 2.678336 CAAGCTAGGACCGAAAATGGAC 59.322 50.000 0.00 0.00 0.00 4.02
421 425 2.569853 TCAAGCTAGGACCGAAAATGGA 59.430 45.455 0.00 0.00 0.00 3.41
422 426 2.985896 TCAAGCTAGGACCGAAAATGG 58.014 47.619 0.00 0.00 0.00 3.16
423 427 5.123820 TCAATTCAAGCTAGGACCGAAAATG 59.876 40.000 0.00 0.00 0.00 2.32
424 428 5.123979 GTCAATTCAAGCTAGGACCGAAAAT 59.876 40.000 0.00 0.00 0.00 1.82
425 429 4.454504 GTCAATTCAAGCTAGGACCGAAAA 59.545 41.667 0.00 0.00 0.00 2.29
426 430 4.000988 GTCAATTCAAGCTAGGACCGAAA 58.999 43.478 0.00 0.00 0.00 3.46
427 431 3.007506 TGTCAATTCAAGCTAGGACCGAA 59.992 43.478 0.00 0.00 0.00 4.30
428 432 2.565391 TGTCAATTCAAGCTAGGACCGA 59.435 45.455 0.00 0.00 0.00 4.69
429 433 2.673368 GTGTCAATTCAAGCTAGGACCG 59.327 50.000 0.00 0.00 0.00 4.79
430 434 2.673368 CGTGTCAATTCAAGCTAGGACC 59.327 50.000 0.00 0.00 0.00 4.46
450 454 0.668096 TACGGCAAACACCACTAGCG 60.668 55.000 0.00 0.00 0.00 4.26
451 455 0.794473 GTACGGCAAACACCACTAGC 59.206 55.000 0.00 0.00 0.00 3.42
457 461 2.159327 ACAGTAGTACGGCAAACACC 57.841 50.000 0.00 0.00 0.00 4.16
460 464 3.192466 CCCATACAGTAGTACGGCAAAC 58.808 50.000 0.00 0.00 32.28 2.93
464 468 1.753073 ACACCCATACAGTAGTACGGC 59.247 52.381 0.00 0.00 32.28 5.68
465 469 4.581824 ACATACACCCATACAGTAGTACGG 59.418 45.833 0.00 0.00 33.41 4.02
466 470 5.762825 ACATACACCCATACAGTAGTACG 57.237 43.478 0.00 0.00 31.96 3.67
467 471 7.088905 GCATACATACACCCATACAGTAGTAC 58.911 42.308 0.00 0.00 31.96 2.73
468 472 6.209986 GGCATACATACACCCATACAGTAGTA 59.790 42.308 0.00 0.00 34.10 1.82
469 473 5.011738 GGCATACATACACCCATACAGTAGT 59.988 44.000 0.00 0.00 0.00 2.73
470 474 5.011635 TGGCATACATACACCCATACAGTAG 59.988 44.000 0.00 0.00 0.00 2.57
472 476 3.714280 TGGCATACATACACCCATACAGT 59.286 43.478 0.00 0.00 0.00 3.55
475 1001 4.065088 CAGTGGCATACATACACCCATAC 58.935 47.826 0.00 0.00 35.79 2.39
480 1006 1.670811 GCACAGTGGCATACATACACC 59.329 52.381 1.84 0.00 35.79 4.16
499 1025 3.810896 GAACCCATTGACCGGCGC 61.811 66.667 0.00 0.00 0.00 6.53
533 1059 2.818432 ACGACTAGTGTACTCCCTGTTG 59.182 50.000 0.00 0.00 0.00 3.33
553 1079 1.741706 TGGTGCTGCGTAGAGTACTAC 59.258 52.381 4.08 0.00 43.74 2.73
566 1092 2.417719 GTTCAGTAGAGGTTGGTGCTG 58.582 52.381 0.00 0.00 0.00 4.41
576 1102 2.360801 GAGCCAGCTAGGTTCAGTAGAG 59.639 54.545 12.07 0.00 46.12 2.43
583 1109 3.471680 CCTTTATGAGCCAGCTAGGTTC 58.528 50.000 10.64 10.64 46.95 3.62
593 1119 1.230324 GATGTCCGCCTTTATGAGCC 58.770 55.000 0.00 0.00 0.00 4.70
607 1133 1.683418 GGGTACGGGTGGAGGATGTC 61.683 65.000 0.00 0.00 0.00 3.06
613 1139 4.446413 GTGCGGGTACGGGTGGAG 62.446 72.222 0.00 0.00 41.36 3.86
648 1174 4.667262 TGGGCATTTTTAATCACGAATCG 58.333 39.130 0.00 0.00 0.00 3.34
677 1205 1.541588 GCTTTGAGTTTGGTAGGCAGG 59.458 52.381 0.00 0.00 0.00 4.85
696 1224 2.884207 GGCACGTACCGCTACAGC 60.884 66.667 0.00 0.00 37.78 4.40
819 1353 1.599797 GTGAGTTTGACGGGGGTGG 60.600 63.158 0.00 0.00 0.00 4.61
821 1355 0.683412 GTAGTGAGTTTGACGGGGGT 59.317 55.000 0.00 0.00 0.00 4.95
842 1377 2.816958 CGCATTGACTCGGCAGCT 60.817 61.111 0.00 0.00 0.00 4.24
883 1424 2.652382 TATATGGCGGTGGCGTGTGG 62.652 60.000 0.00 0.00 41.24 4.17
889 1430 1.087771 GCGGTATATATGGCGGTGGC 61.088 60.000 0.00 0.00 38.90 5.01
936 1477 2.120909 AGCGAGCTCTCTCTCCTGC 61.121 63.158 12.85 4.97 37.19 4.85
940 1481 2.412937 GGCAGCGAGCTCTCTCTC 59.587 66.667 12.85 3.16 44.79 3.20
941 1482 3.517140 CGGCAGCGAGCTCTCTCT 61.517 66.667 12.85 3.17 44.79 3.10
975 1516 3.181477 CGGTCGACCTTCTAGACTCTAGA 60.181 52.174 30.92 11.23 35.42 2.43
978 1519 1.407162 CCGGTCGACCTTCTAGACTCT 60.407 57.143 30.92 0.00 35.42 3.24
979 1520 1.015868 CCGGTCGACCTTCTAGACTC 58.984 60.000 30.92 2.03 35.42 3.36
980 1521 1.031029 GCCGGTCGACCTTCTAGACT 61.031 60.000 30.92 0.00 35.42 3.24
981 1522 1.310933 TGCCGGTCGACCTTCTAGAC 61.311 60.000 30.92 9.31 0.00 2.59
983 1524 0.249073 CATGCCGGTCGACCTTCTAG 60.249 60.000 30.92 15.58 0.00 2.43
1218 1790 1.601663 CGGATGATGAGCTCGTCTTCC 60.602 57.143 37.94 37.94 45.48 3.46
1221 1793 1.361993 GCGGATGATGAGCTCGTCT 59.638 57.895 30.85 19.10 39.48 4.18
1279 1852 0.248907 GGCGAGGTTGATCGATCGAA 60.249 55.000 23.50 10.92 45.56 3.71
1283 1856 1.065928 GTCGGCGAGGTTGATCGAT 59.934 57.895 11.20 0.00 45.56 3.59
1284 1857 2.488355 GTCGGCGAGGTTGATCGA 59.512 61.111 11.20 0.00 45.56 3.59
1285 1858 2.949678 CGTCGGCGAGGTTGATCG 60.950 66.667 20.45 10.25 45.48 3.69
1286 1859 2.158959 CACGTCGGCGAGGTTGATC 61.159 63.158 30.00 6.93 42.00 2.92
1287 1860 2.126071 CACGTCGGCGAGGTTGAT 60.126 61.111 30.00 8.52 42.00 2.57
1290 1863 4.719369 GAGCACGTCGGCGAGGTT 62.719 66.667 30.00 18.47 39.29 3.50
1307 1880 4.213694 AGAAGTCGCACTATATACAGGACG 59.786 45.833 0.00 0.00 0.00 4.79
1308 1881 5.692613 AGAAGTCGCACTATATACAGGAC 57.307 43.478 0.00 0.00 0.00 3.85
1309 1882 6.504398 CAAAGAAGTCGCACTATATACAGGA 58.496 40.000 0.00 0.00 0.00 3.86
1310 1883 5.175856 GCAAAGAAGTCGCACTATATACAGG 59.824 44.000 0.00 0.00 0.00 4.00
1311 1884 5.980116 AGCAAAGAAGTCGCACTATATACAG 59.020 40.000 0.00 0.00 0.00 2.74
1312 1885 5.748630 CAGCAAAGAAGTCGCACTATATACA 59.251 40.000 0.00 0.00 0.00 2.29
1322 1898 0.161870 GTCGTCAGCAAAGAAGTCGC 59.838 55.000 0.00 0.00 0.00 5.19
1323 1899 0.431233 CGTCGTCAGCAAAGAAGTCG 59.569 55.000 0.00 0.00 0.00 4.18
1554 2174 4.778143 AGGGCGAACATCGTGGGC 62.778 66.667 1.45 0.00 42.81 5.36
1575 2198 1.898574 CACGGGAGGCTGCTTTGTT 60.899 57.895 5.84 0.00 0.00 2.83
1593 2216 1.457009 CGTCGGAGGAGGAGGAATCC 61.457 65.000 0.00 0.00 37.07 3.01
1595 2218 1.455959 CCGTCGGAGGAGGAGGAAT 60.456 63.158 4.91 0.00 0.00 3.01
1596 2219 2.044252 CCGTCGGAGGAGGAGGAA 60.044 66.667 4.91 0.00 0.00 3.36
1597 2220 4.816984 GCCGTCGGAGGAGGAGGA 62.817 72.222 17.49 0.00 0.00 3.71
1599 2222 3.522731 CTGCCGTCGGAGGAGGAG 61.523 72.222 17.49 0.00 0.00 3.69
1602 2225 4.504916 CTGCTGCCGTCGGAGGAG 62.505 72.222 17.49 15.53 0.00 3.69
1647 2273 2.610859 AGGTTCAGGTCGGGGCAT 60.611 61.111 0.00 0.00 0.00 4.40
1893 2519 0.878416 TGCGGAGGTGGAAAAATTCG 59.122 50.000 0.00 0.00 0.00 3.34
1920 2546 1.134759 TCTTCACCGTTTCGTTGGACA 60.135 47.619 0.00 0.00 0.00 4.02
1924 2550 5.270853 AGATTTTTCTTCACCGTTTCGTTG 58.729 37.500 0.00 0.00 0.00 4.10
1925 2551 5.494632 AGATTTTTCTTCACCGTTTCGTT 57.505 34.783 0.00 0.00 0.00 3.85
1928 2554 8.290325 ACAGATTAGATTTTTCTTCACCGTTTC 58.710 33.333 0.00 0.00 0.00 2.78
1960 2598 1.682323 GGGTTTGGCGTACAAGGAAAA 59.318 47.619 0.00 0.00 40.82 2.29
1962 2600 0.183014 TGGGTTTGGCGTACAAGGAA 59.817 50.000 0.00 0.00 40.82 3.36
1964 2602 1.847890 CGTGGGTTTGGCGTACAAGG 61.848 60.000 0.00 0.00 40.82 3.61
1965 2603 0.881159 TCGTGGGTTTGGCGTACAAG 60.881 55.000 0.00 0.00 40.82 3.16
1966 2604 0.463295 TTCGTGGGTTTGGCGTACAA 60.463 50.000 0.00 0.00 37.28 2.41
1967 2605 0.250381 ATTCGTGGGTTTGGCGTACA 60.250 50.000 0.00 0.00 0.00 2.90
1968 2606 0.876399 AATTCGTGGGTTTGGCGTAC 59.124 50.000 0.00 0.00 0.00 3.67
1969 2607 1.267261 CAAATTCGTGGGTTTGGCGTA 59.733 47.619 0.00 0.00 32.96 4.42
1970 2608 0.031449 CAAATTCGTGGGTTTGGCGT 59.969 50.000 0.00 0.00 32.96 5.68
1971 2609 0.031449 ACAAATTCGTGGGTTTGGCG 59.969 50.000 0.00 0.00 39.12 5.69
1972 2610 1.604438 GGACAAATTCGTGGGTTTGGC 60.604 52.381 0.00 0.00 41.52 4.52
1973 2611 1.960689 AGGACAAATTCGTGGGTTTGG 59.039 47.619 0.00 0.00 39.12 3.28
1974 2612 2.884639 AGAGGACAAATTCGTGGGTTTG 59.115 45.455 0.00 0.00 40.29 2.93
1976 2614 2.372172 AGAGAGGACAAATTCGTGGGTT 59.628 45.455 0.00 0.00 0.00 4.11
1977 2615 1.978580 AGAGAGGACAAATTCGTGGGT 59.021 47.619 0.00 0.00 0.00 4.51
1978 2616 2.234908 AGAGAGAGGACAAATTCGTGGG 59.765 50.000 0.00 0.00 0.00 4.61
1979 2617 3.194542 AGAGAGAGAGGACAAATTCGTGG 59.805 47.826 0.00 0.00 0.00 4.94
1980 2618 4.157656 AGAGAGAGAGAGGACAAATTCGTG 59.842 45.833 0.00 0.00 0.00 4.35
1981 2619 4.340617 AGAGAGAGAGAGGACAAATTCGT 58.659 43.478 0.00 0.00 0.00 3.85
1982 2620 4.397730 TGAGAGAGAGAGAGGACAAATTCG 59.602 45.833 0.00 0.00 0.00 3.34
1983 2621 5.184864 TGTGAGAGAGAGAGAGGACAAATTC 59.815 44.000 0.00 0.00 0.00 2.17
1984 2622 5.047377 GTGTGAGAGAGAGAGAGGACAAATT 60.047 44.000 0.00 0.00 0.00 1.82
1998 2636 2.736978 GTCTGTGTGTGTGTGAGAGAG 58.263 52.381 0.00 0.00 0.00 3.20
2001 2639 0.527600 GCGTCTGTGTGTGTGTGAGA 60.528 55.000 0.00 0.00 0.00 3.27
2004 2642 0.445829 TTTGCGTCTGTGTGTGTGTG 59.554 50.000 0.00 0.00 0.00 3.82
2005 2643 1.160989 TTTTGCGTCTGTGTGTGTGT 58.839 45.000 0.00 0.00 0.00 3.72
2006 2644 2.110990 CATTTTGCGTCTGTGTGTGTG 58.889 47.619 0.00 0.00 0.00 3.82
2007 2645 1.065401 CCATTTTGCGTCTGTGTGTGT 59.935 47.619 0.00 0.00 0.00 3.72
2008 2646 1.333308 TCCATTTTGCGTCTGTGTGTG 59.667 47.619 0.00 0.00 0.00 3.82
2009 2647 1.603802 CTCCATTTTGCGTCTGTGTGT 59.396 47.619 0.00 0.00 0.00 3.72
2010 2648 1.603802 ACTCCATTTTGCGTCTGTGTG 59.396 47.619 0.00 0.00 0.00 3.82
2011 2649 1.967319 ACTCCATTTTGCGTCTGTGT 58.033 45.000 0.00 0.00 0.00 3.72
2012 2650 3.067106 AGTACTCCATTTTGCGTCTGTG 58.933 45.455 0.00 0.00 0.00 3.66
2013 2651 3.402628 AGTACTCCATTTTGCGTCTGT 57.597 42.857 0.00 0.00 0.00 3.41
2014 2652 5.352284 AGATAGTACTCCATTTTGCGTCTG 58.648 41.667 0.00 0.00 0.00 3.51
2015 2653 5.599999 AGATAGTACTCCATTTTGCGTCT 57.400 39.130 0.00 0.00 0.00 4.18
2016 2654 6.663944 AAAGATAGTACTCCATTTTGCGTC 57.336 37.500 0.00 0.00 0.00 5.19
2017 2655 8.732746 ATAAAAGATAGTACTCCATTTTGCGT 57.267 30.769 16.29 5.63 0.00 5.24
2018 2656 9.651718 GAATAAAAGATAGTACTCCATTTTGCG 57.348 33.333 16.29 0.00 0.00 4.85
2025 2663 9.667107 CAACCAAGAATAAAAGATAGTACTCCA 57.333 33.333 0.00 0.00 0.00 3.86
2026 2664 9.110502 CCAACCAAGAATAAAAGATAGTACTCC 57.889 37.037 0.00 0.00 0.00 3.85
2027 2665 9.668497 ACCAACCAAGAATAAAAGATAGTACTC 57.332 33.333 0.00 0.00 0.00 2.59
2028 2666 9.449719 CACCAACCAAGAATAAAAGATAGTACT 57.550 33.333 0.00 0.00 0.00 2.73
2029 2667 8.182227 GCACCAACCAAGAATAAAAGATAGTAC 58.818 37.037 0.00 0.00 0.00 2.73
2030 2668 7.338449 GGCACCAACCAAGAATAAAAGATAGTA 59.662 37.037 0.00 0.00 0.00 1.82
2031 2669 6.152831 GGCACCAACCAAGAATAAAAGATAGT 59.847 38.462 0.00 0.00 0.00 2.12
2032 2670 6.564328 GGCACCAACCAAGAATAAAAGATAG 58.436 40.000 0.00 0.00 0.00 2.08
2033 2671 5.124776 CGGCACCAACCAAGAATAAAAGATA 59.875 40.000 0.00 0.00 0.00 1.98
2036 2674 3.574614 CGGCACCAACCAAGAATAAAAG 58.425 45.455 0.00 0.00 0.00 2.27
2039 2677 1.202952 ACCGGCACCAACCAAGAATAA 60.203 47.619 0.00 0.00 0.00 1.40
2043 2681 1.826054 CAACCGGCACCAACCAAGA 60.826 57.895 0.00 0.00 0.00 3.02
2044 2682 2.124693 ACAACCGGCACCAACCAAG 61.125 57.895 0.00 0.00 0.00 3.61
2056 2694 2.656560 TTTTTCACCCAACACAACCG 57.343 45.000 0.00 0.00 0.00 4.44
2197 2835 0.596082 CCATCCACACGACCAAAACC 59.404 55.000 0.00 0.00 0.00 3.27
2251 2889 2.199236 GACAAGCCGAAATACCTACCG 58.801 52.381 0.00 0.00 0.00 4.02
2347 2985 3.746492 ACACAGACAAGCCGAAATAGAAC 59.254 43.478 0.00 0.00 0.00 3.01
2356 2994 0.592247 GTGCAAACACAGACAAGCCG 60.592 55.000 0.00 0.00 46.61 5.52
2357 2995 3.256620 GTGCAAACACAGACAAGCC 57.743 52.632 0.00 0.00 46.61 4.35
2367 3005 3.737663 GCAGAATTTGTGGAGTGCAAACA 60.738 43.478 0.00 0.00 38.44 2.83
2368 3006 2.796593 GCAGAATTTGTGGAGTGCAAAC 59.203 45.455 0.00 0.00 38.44 2.93
2369 3007 2.543445 CGCAGAATTTGTGGAGTGCAAA 60.543 45.455 0.00 0.00 39.69 3.68
2373 3011 0.877071 AGCGCAGAATTTGTGGAGTG 59.123 50.000 11.47 0.00 37.77 3.51
2374 3012 1.537202 GAAGCGCAGAATTTGTGGAGT 59.463 47.619 11.47 0.00 37.77 3.85
2375 3013 1.536766 TGAAGCGCAGAATTTGTGGAG 59.463 47.619 11.47 0.00 37.77 3.86
2376 3014 1.603456 TGAAGCGCAGAATTTGTGGA 58.397 45.000 11.47 0.00 37.77 4.02
2377 3015 2.420628 TTGAAGCGCAGAATTTGTGG 57.579 45.000 11.47 0.00 37.77 4.17
2378 3016 3.737266 ACATTTGAAGCGCAGAATTTGTG 59.263 39.130 11.47 0.94 40.33 3.33
2379 3017 3.981211 ACATTTGAAGCGCAGAATTTGT 58.019 36.364 11.47 3.47 0.00 2.83
2381 3019 4.318974 GCAAACATTTGAAGCGCAGAATTT 60.319 37.500 11.47 0.00 40.55 1.82
2382 3020 3.184986 GCAAACATTTGAAGCGCAGAATT 59.815 39.130 11.47 0.00 40.55 2.17
2383 3021 2.733026 GCAAACATTTGAAGCGCAGAAT 59.267 40.909 11.47 0.56 40.55 2.40
2385 3023 1.066757 TGCAAACATTTGAAGCGCAGA 59.933 42.857 11.47 0.00 40.55 4.26
2386 3024 1.190763 GTGCAAACATTTGAAGCGCAG 59.809 47.619 11.47 0.00 40.55 5.18
2388 3026 0.159345 CGTGCAAACATTTGAAGCGC 59.841 50.000 8.54 0.00 40.55 5.92
2391 3029 3.051327 TGATGCGTGCAAACATTTGAAG 58.949 40.909 8.54 0.17 40.55 3.02
2392 3030 3.089573 TGATGCGTGCAAACATTTGAA 57.910 38.095 8.54 0.00 40.55 2.69
2393 3031 2.789491 TGATGCGTGCAAACATTTGA 57.211 40.000 8.54 0.00 40.55 2.69
2394 3032 3.480665 CGATTGATGCGTGCAAACATTTG 60.481 43.478 0.00 0.00 41.03 2.32
2395 3033 2.662637 CGATTGATGCGTGCAAACATTT 59.337 40.909 0.00 0.00 0.00 2.32
2396 3034 2.095314 TCGATTGATGCGTGCAAACATT 60.095 40.909 0.00 0.00 0.00 2.71
2398 3036 0.871057 TCGATTGATGCGTGCAAACA 59.129 45.000 0.00 0.00 0.00 2.83
2399 3037 1.841944 CATCGATTGATGCGTGCAAAC 59.158 47.619 10.05 0.00 45.06 2.93
2400 3038 2.177001 CATCGATTGATGCGTGCAAA 57.823 45.000 10.05 0.00 45.06 3.68
2401 3039 3.901854 CATCGATTGATGCGTGCAA 57.098 47.368 10.05 0.00 45.06 4.08
2409 3047 7.470079 GCATATAGCAATGTTCATCGATTGAT 58.530 34.615 0.00 0.00 44.79 2.57
2411 3049 5.731263 CGCATATAGCAATGTTCATCGATTG 59.269 40.000 0.00 0.00 46.13 2.67
2414 3052 3.123453 GCGCATATAGCAATGTTCATCGA 59.877 43.478 0.30 0.00 46.13 3.59
2416 3054 4.153986 GTGCGCATATAGCAATGTTCATC 58.846 43.478 15.91 0.00 46.97 2.92
2417 3055 3.058016 GGTGCGCATATAGCAATGTTCAT 60.058 43.478 15.91 0.00 46.97 2.57
2419 3057 2.549754 AGGTGCGCATATAGCAATGTTC 59.450 45.455 15.91 0.00 46.97 3.18
2421 3059 2.260844 AGGTGCGCATATAGCAATGT 57.739 45.000 15.91 0.00 46.97 2.71
2422 3060 2.549329 TGAAGGTGCGCATATAGCAATG 59.451 45.455 15.91 0.00 46.97 2.82
2423 3061 2.849942 TGAAGGTGCGCATATAGCAAT 58.150 42.857 15.91 0.00 46.97 3.56
2424 3062 2.323968 TGAAGGTGCGCATATAGCAA 57.676 45.000 15.91 0.00 46.97 3.91
2425 3063 2.212652 CTTGAAGGTGCGCATATAGCA 58.787 47.619 15.91 6.07 46.13 3.49
2426 3064 2.213499 ACTTGAAGGTGCGCATATAGC 58.787 47.619 15.91 0.00 40.87 2.97
2427 3065 5.696270 TCATAACTTGAAGGTGCGCATATAG 59.304 40.000 15.91 8.30 0.00 1.31
2429 3067 4.450976 TCATAACTTGAAGGTGCGCATAT 58.549 39.130 15.91 1.41 0.00 1.78
2430 3068 3.867857 TCATAACTTGAAGGTGCGCATA 58.132 40.909 15.91 0.00 0.00 3.14
2431 3069 2.710377 TCATAACTTGAAGGTGCGCAT 58.290 42.857 15.91 0.00 0.00 4.73
2433 3071 3.552604 TTTCATAACTTGAAGGTGCGC 57.447 42.857 0.00 0.00 44.90 6.09
2434 3072 5.295431 TCATTTCATAACTTGAAGGTGCG 57.705 39.130 0.00 0.00 44.90 5.34
2435 3073 7.276438 GGATTTCATTTCATAACTTGAAGGTGC 59.724 37.037 0.00 0.00 44.90 5.01
2436 3074 7.485913 CGGATTTCATTTCATAACTTGAAGGTG 59.514 37.037 0.00 0.00 44.90 4.00
2438 3076 7.485913 CACGGATTTCATTTCATAACTTGAAGG 59.514 37.037 0.00 0.00 44.90 3.46
2439 3077 8.023128 ACACGGATTTCATTTCATAACTTGAAG 58.977 33.333 0.00 0.00 44.90 3.02
2440 3078 7.807433 CACACGGATTTCATTTCATAACTTGAA 59.193 33.333 0.00 0.00 42.62 2.69
2441 3079 7.304735 CACACGGATTTCATTTCATAACTTGA 58.695 34.615 0.00 0.00 0.00 3.02
2442 3080 6.527722 CCACACGGATTTCATTTCATAACTTG 59.472 38.462 0.00 0.00 0.00 3.16
2443 3081 6.350110 CCCACACGGATTTCATTTCATAACTT 60.350 38.462 0.00 0.00 0.00 2.66
2445 3083 5.124776 TCCCACACGGATTTCATTTCATAAC 59.875 40.000 0.00 0.00 34.86 1.89
2446 3084 5.257262 TCCCACACGGATTTCATTTCATAA 58.743 37.500 0.00 0.00 34.86 1.90
2448 3086 3.696045 TCCCACACGGATTTCATTTCAT 58.304 40.909 0.00 0.00 34.86 2.57
2449 3087 3.147553 TCCCACACGGATTTCATTTCA 57.852 42.857 0.00 0.00 34.86 2.69
2450 3088 4.082245 ACATTCCCACACGGATTTCATTTC 60.082 41.667 0.00 0.00 41.63 2.17
2452 3090 3.430453 ACATTCCCACACGGATTTCATT 58.570 40.909 0.00 0.00 41.63 2.57
2453 3091 3.016736 GACATTCCCACACGGATTTCAT 58.983 45.455 0.00 0.00 41.63 2.57
2454 3092 2.224646 TGACATTCCCACACGGATTTCA 60.225 45.455 0.00 0.00 41.63 2.69
2455 3093 2.432444 TGACATTCCCACACGGATTTC 58.568 47.619 0.00 0.00 41.63 2.17
2456 3094 2.577606 TGACATTCCCACACGGATTT 57.422 45.000 0.00 0.00 41.63 2.17
2457 3095 2.436417 CTTGACATTCCCACACGGATT 58.564 47.619 0.00 0.00 41.63 3.01
2458 3096 1.340017 CCTTGACATTCCCACACGGAT 60.340 52.381 0.00 0.00 41.63 4.18
2459 3097 0.036164 CCTTGACATTCCCACACGGA 59.964 55.000 0.00 0.00 39.68 4.69
2460 3098 0.250727 ACCTTGACATTCCCACACGG 60.251 55.000 0.00 0.00 0.00 4.94
2461 3099 2.346803 CTACCTTGACATTCCCACACG 58.653 52.381 0.00 0.00 0.00 4.49
2463 3101 2.571653 CTCCTACCTTGACATTCCCACA 59.428 50.000 0.00 0.00 0.00 4.17
2464 3102 2.838202 TCTCCTACCTTGACATTCCCAC 59.162 50.000 0.00 0.00 0.00 4.61
2465 3103 3.199442 TCTCCTACCTTGACATTCCCA 57.801 47.619 0.00 0.00 0.00 4.37
2466 3104 3.181450 CCATCTCCTACCTTGACATTCCC 60.181 52.174 0.00 0.00 0.00 3.97
2467 3105 3.456277 ACCATCTCCTACCTTGACATTCC 59.544 47.826 0.00 0.00 0.00 3.01
2468 3106 4.407296 AGACCATCTCCTACCTTGACATTC 59.593 45.833 0.00 0.00 0.00 2.67
2469 3107 4.366267 AGACCATCTCCTACCTTGACATT 58.634 43.478 0.00 0.00 0.00 2.71
2470 3108 4.000928 AGACCATCTCCTACCTTGACAT 57.999 45.455 0.00 0.00 0.00 3.06
2471 3109 3.474798 AGACCATCTCCTACCTTGACA 57.525 47.619 0.00 0.00 0.00 3.58
2472 3110 3.769844 TCAAGACCATCTCCTACCTTGAC 59.230 47.826 0.00 0.00 36.21 3.18
2473 3111 4.061131 TCAAGACCATCTCCTACCTTGA 57.939 45.455 0.00 0.00 38.03 3.02
2474 3112 4.826274 TTCAAGACCATCTCCTACCTTG 57.174 45.455 0.00 0.00 34.11 3.61
2475 3113 4.323868 GCTTTCAAGACCATCTCCTACCTT 60.324 45.833 0.00 0.00 0.00 3.50
2476 3114 3.198853 GCTTTCAAGACCATCTCCTACCT 59.801 47.826 0.00 0.00 0.00 3.08
2477 3115 3.055094 TGCTTTCAAGACCATCTCCTACC 60.055 47.826 0.00 0.00 0.00 3.18
2478 3116 4.207891 TGCTTTCAAGACCATCTCCTAC 57.792 45.455 0.00 0.00 0.00 3.18
2501 4605 1.974957 TGCCTGCTTACTCACCTTGTA 59.025 47.619 0.00 0.00 0.00 2.41
2507 4611 1.466360 CGCAAATGCCTGCTTACTCAC 60.466 52.381 0.00 0.00 40.33 3.51
2526 4665 1.938814 CAAACAACGCAGGCACACG 60.939 57.895 0.00 0.00 36.26 4.49
2551 4694 4.501559 CGGTGTACGTACCATGTAAGATTG 59.498 45.833 22.43 0.00 40.89 2.67
2567 4710 1.632948 GCGCTTTTCCCTCGGTGTAC 61.633 60.000 0.00 0.00 0.00 2.90
2568 4711 1.375013 GCGCTTTTCCCTCGGTGTA 60.375 57.895 0.00 0.00 0.00 2.90
2569 4712 2.668550 GCGCTTTTCCCTCGGTGT 60.669 61.111 0.00 0.00 0.00 4.16
2570 4713 1.515521 AAAGCGCTTTTCCCTCGGTG 61.516 55.000 29.11 0.00 34.04 4.94
2571 4714 0.035739 TAAAGCGCTTTTCCCTCGGT 59.964 50.000 37.56 15.14 34.23 4.69
2572 4715 0.446616 GTAAAGCGCTTTTCCCTCGG 59.553 55.000 37.56 0.00 34.23 4.63
2645 4788 0.249911 ACCAGTTCAGTGTTCGGAGC 60.250 55.000 0.00 0.00 0.00 4.70
2649 4798 2.061773 CTGCTACCAGTTCAGTGTTCG 58.938 52.381 0.00 0.00 34.31 3.95
2670 4825 1.000060 CTGCACCAAATCCACCAACTG 60.000 52.381 0.00 0.00 0.00 3.16
2694 4853 3.092301 TGTGCTACTCACTACATCTGCT 58.908 45.455 0.00 0.00 45.81 4.24
2697 4856 5.473931 CAAAGTGTGCTACTCACTACATCT 58.526 41.667 3.03 0.00 44.03 2.90
2737 4904 0.893727 AAAAGAAATGGCGCCGACCT 60.894 50.000 23.90 13.20 0.00 3.85
2738 4905 0.732538 CAAAAGAAATGGCGCCGACC 60.733 55.000 23.90 10.92 0.00 4.79
2747 4918 7.580600 CCCGGGAAAATAAAACAAAAGAAATG 58.419 34.615 18.48 0.00 0.00 2.32
2773 4944 3.191539 GAGGCTGCCGCTTCTTCG 61.192 66.667 15.58 0.00 39.02 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.