Multiple sequence alignment - TraesCS1A01G267900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G267900 chr1A 100.000 4984 0 0 3003 7986 462797697 462792714 0.000000e+00 9204.0
1 TraesCS1A01G267900 chr1A 100.000 2662 0 0 1 2662 462800699 462798038 0.000000e+00 4916.0
2 TraesCS1A01G267900 chr1A 89.623 106 11 0 2317 2422 139642048 139642153 1.400000e-27 135.0
3 TraesCS1A01G267900 chr1B 91.150 5085 301 75 3003 7986 486973285 486968249 0.000000e+00 6759.0
4 TraesCS1A01G267900 chr1B 87.883 2055 98 55 238 2212 486976308 486974325 0.000000e+00 2276.0
5 TraesCS1A01G267900 chr1B 92.208 308 24 0 2316 2623 486974140 486973833 3.420000e-118 436.0
6 TraesCS1A01G267900 chr1B 78.013 473 93 9 7399 7865 403125548 403125081 3.650000e-73 287.0
7 TraesCS1A01G267900 chr1B 84.279 229 18 7 5 221 486976515 486976293 2.920000e-49 207.0
8 TraesCS1A01G267900 chr1B 81.034 116 19 3 2199 2314 486974281 486974169 1.100000e-13 89.8
9 TraesCS1A01G267900 chr1D 91.368 4298 277 55 3008 7283 363727098 363722873 0.000000e+00 5795.0
10 TraesCS1A01G267900 chr1D 90.720 2015 77 37 239 2212 363729863 363727918 0.000000e+00 2584.0
11 TraesCS1A01G267900 chr1D 86.818 440 30 3 2199 2611 363727874 363727436 4.360000e-127 466.0
12 TraesCS1A01G267900 chr1D 85.604 389 54 2 7453 7840 363722850 363722463 2.680000e-109 407.0
13 TraesCS1A01G267900 chr1D 85.837 233 11 7 1 221 363730071 363729849 2.240000e-55 228.0
14 TraesCS1A01G267900 chr6B 84.348 2185 194 63 4429 6586 57712649 57710586 0.000000e+00 2004.0
15 TraesCS1A01G267900 chr6B 87.229 462 45 9 1164 1622 57713557 57713107 1.540000e-141 514.0
16 TraesCS1A01G267900 chr6B 83.427 356 50 5 6707 7054 57710521 57710167 1.000000e-83 322.0
17 TraesCS1A01G267900 chr6B 77.660 470 96 8 7400 7865 184546000 184546464 2.190000e-70 278.0
18 TraesCS1A01G267900 chr6B 81.651 327 36 8 4118 4431 57713047 57712732 4.780000e-62 250.0
19 TraesCS1A01G267900 chr6B 87.931 58 6 1 57 114 200253521 200253577 5.170000e-07 67.6
20 TraesCS1A01G267900 chr6B 84.848 66 6 4 50 114 193014474 193014536 6.690000e-06 63.9
21 TraesCS1A01G267900 chr3A 83.692 325 53 0 4429 4753 527840026 527839702 2.800000e-79 307.0
22 TraesCS1A01G267900 chr3B 83.923 311 50 0 4429 4739 531212338 531212028 1.680000e-76 298.0
23 TraesCS1A01G267900 chr3B 93.478 46 2 1 2081 2126 176268952 176268996 5.170000e-07 67.6
24 TraesCS1A01G267900 chr3D 82.769 325 56 0 4429 4753 405310039 405309715 2.820000e-74 291.0
25 TraesCS1A01G267900 chr5B 78.298 470 81 18 7417 7876 405708092 405708550 4.720000e-72 283.0
26 TraesCS1A01G267900 chr5B 96.875 32 0 1 83 114 161699130 161699100 1.400000e-02 52.8
27 TraesCS1A01G267900 chrUn 80.260 385 66 6 4374 4753 276463259 276462880 1.700000e-71 281.0
28 TraesCS1A01G267900 chrUn 80.260 385 66 6 4374 4753 276527247 276527626 1.700000e-71 281.0
29 TraesCS1A01G267900 chrUn 80.260 385 66 6 4374 4753 295905924 295906303 1.700000e-71 281.0
30 TraesCS1A01G267900 chrUn 78.417 139 27 3 1432 1570 276463594 276463459 3.970000e-13 87.9
31 TraesCS1A01G267900 chrUn 77.703 148 30 3 1423 1570 276526903 276527047 3.970000e-13 87.9
32 TraesCS1A01G267900 chrUn 77.703 148 30 3 1423 1570 295905580 295905724 3.970000e-13 87.9
33 TraesCS1A01G267900 chr5A 79.481 385 69 8 7402 7781 619451611 619451990 1.710000e-66 265.0
34 TraesCS1A01G267900 chr2D 77.027 148 31 3 1423 1570 437947752 437947896 1.850000e-11 82.4
35 TraesCS1A01G267900 chr2B 87.302 63 6 2 54 115 605806403 605806342 4.000000e-08 71.3
36 TraesCS1A01G267900 chr7A 87.931 58 7 0 7606 7663 693995835 693995778 1.440000e-07 69.4
37 TraesCS1A01G267900 chr7B 85.484 62 7 2 54 114 472750912 472750972 6.690000e-06 63.9
38 TraesCS1A01G267900 chr7B 100.000 28 0 0 88 115 612089905 612089878 1.400000e-02 52.8
39 TraesCS1A01G267900 chr4A 91.304 46 4 0 2081 2126 657103970 657103925 6.690000e-06 63.9
40 TraesCS1A01G267900 chr6D 86.207 58 7 1 57 114 224181386 224181442 2.410000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G267900 chr1A 462792714 462800699 7985 True 7060.00 9204 100.00000 1 7986 2 chr1A.!!$R1 7985
1 TraesCS1A01G267900 chr1B 486968249 486976515 8266 True 1953.56 6759 87.31080 5 7986 5 chr1B.!!$R2 7981
2 TraesCS1A01G267900 chr1D 363722463 363730071 7608 True 1896.00 5795 88.06940 1 7840 5 chr1D.!!$R1 7839
3 TraesCS1A01G267900 chr6B 57710167 57713557 3390 True 772.50 2004 84.16375 1164 7054 4 chr6B.!!$R1 5890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.244721 AAATTTCAAGCCAGCCGAGC 59.755 50.0 0.00 0.00 0.00 5.03 F
1533 1582 0.456142 TCGACATCTTCTTCGCCGTG 60.456 55.0 0.00 0.00 35.15 4.94 F
3101 3464 0.394192 TGAGCCATTGCCTATCCTCG 59.606 55.0 0.00 0.00 38.69 4.63 F
3825 4237 0.032912 AAGGACCCAAACCAAACCGT 60.033 50.0 0.00 0.00 0.00 4.83 F
5761 6344 0.107268 AGTGTGTGTGCTGATCTGCA 59.893 50.0 21.87 21.87 41.05 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1672 0.811281 GTGGGTAAGCCGTACTACGT 59.189 55.0 7.79 0.0 40.58 3.57 R
3242 3607 0.035439 ATGGCGGTTACTGGACAAGG 60.035 55.0 0.00 0.0 0.00 3.61 R
4757 5277 0.173481 TGGCGATCGAGGTTCAGAAG 59.827 55.0 21.57 0.0 0.00 2.85 R
5764 6347 0.174845 CCAAGAACAGGGCATGCATG 59.825 55.0 22.70 22.7 0.00 4.06 R
7353 7990 0.040425 AACGCTGGAATGTTCAACGC 60.040 50.0 0.00 0.0 0.00 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 6.645003 GGCTCAAAATTTTAGGGTTACAAGTG 59.355 38.462 2.44 0.00 0.00 3.16
115 116 7.668886 ACCCCATCAAAATATGCAAAATTTCAA 59.331 29.630 9.95 3.81 0.00 2.69
116 117 8.185505 CCCCATCAAAATATGCAAAATTTCAAG 58.814 33.333 9.95 5.31 0.00 3.02
117 118 7.698970 CCCATCAAAATATGCAAAATTTCAAGC 59.301 33.333 9.95 0.00 0.00 4.01
118 119 7.698970 CCATCAAAATATGCAAAATTTCAAGCC 59.301 33.333 9.95 0.00 0.00 4.35
120 121 7.808672 TCAAAATATGCAAAATTTCAAGCCAG 58.191 30.769 9.95 0.00 0.00 4.85
121 122 5.806366 AATATGCAAAATTTCAAGCCAGC 57.194 34.783 0.00 0.00 0.00 4.85
122 123 1.881591 TGCAAAATTTCAAGCCAGCC 58.118 45.000 7.49 0.00 0.00 4.85
123 124 0.792031 GCAAAATTTCAAGCCAGCCG 59.208 50.000 0.00 0.00 0.00 5.52
124 125 1.605202 GCAAAATTTCAAGCCAGCCGA 60.605 47.619 0.00 0.00 0.00 5.54
126 127 0.244721 AAATTTCAAGCCAGCCGAGC 59.755 50.000 0.00 0.00 0.00 5.03
162 173 0.978146 ACTCCACGAGCAGGCCTAAT 60.978 55.000 3.98 0.00 32.04 1.73
163 174 1.040646 CTCCACGAGCAGGCCTAATA 58.959 55.000 3.98 0.00 0.00 0.98
164 175 1.412710 CTCCACGAGCAGGCCTAATAA 59.587 52.381 3.98 0.00 0.00 1.40
171 182 2.354821 GAGCAGGCCTAATAAACAACCG 59.645 50.000 3.98 0.00 0.00 4.44
174 185 3.181500 GCAGGCCTAATAAACAACCGAAG 60.181 47.826 3.98 0.00 0.00 3.79
205 216 0.599558 GCAGAACCAAAGAGCATGCA 59.400 50.000 21.98 0.00 32.58 3.96
206 217 1.203994 GCAGAACCAAAGAGCATGCAT 59.796 47.619 21.98 4.82 32.58 3.96
207 218 2.353406 GCAGAACCAAAGAGCATGCATT 60.353 45.455 21.98 11.51 32.58 3.56
208 219 3.250744 CAGAACCAAAGAGCATGCATTG 58.749 45.455 21.98 19.84 0.00 2.82
264 275 5.808540 GCATGACATATTTGAACAAGCACAT 59.191 36.000 0.00 0.00 32.53 3.21
344 356 1.742831 GAATTGCCCAACAGCGTCATA 59.257 47.619 0.00 0.00 34.65 2.15
371 383 5.088739 CGTGATAAACATGGAGAAGCAAAC 58.911 41.667 0.00 0.00 32.38 2.93
372 384 5.402398 GTGATAAACATGGAGAAGCAAACC 58.598 41.667 0.00 0.00 0.00 3.27
419 431 2.202797 CCACGATCGGGACTGCAG 60.203 66.667 21.38 13.48 0.00 4.41
516 532 1.945387 ATACATGCTTGGTGCTCGAG 58.055 50.000 8.45 8.45 43.37 4.04
536 552 0.898320 GCAGACAGAGAGGTAGGCAA 59.102 55.000 0.00 0.00 0.00 4.52
537 553 1.404851 GCAGACAGAGAGGTAGGCAAC 60.405 57.143 0.00 0.00 0.00 4.17
570 586 4.900704 CATGGACCCGGGGCATGG 62.901 72.222 32.17 13.02 0.00 3.66
592 608 1.414550 TCCACAGTCCACATCAACGAA 59.585 47.619 0.00 0.00 0.00 3.85
601 617 4.634004 GTCCACATCAACGAACATTCCATA 59.366 41.667 0.00 0.00 0.00 2.74
602 618 5.123186 GTCCACATCAACGAACATTCCATAA 59.877 40.000 0.00 0.00 0.00 1.90
607 623 6.016693 ACATCAACGAACATTCCATAAACACA 60.017 34.615 0.00 0.00 0.00 3.72
608 624 5.753744 TCAACGAACATTCCATAAACACAC 58.246 37.500 0.00 0.00 0.00 3.82
609 625 5.297029 TCAACGAACATTCCATAAACACACA 59.703 36.000 0.00 0.00 0.00 3.72
610 626 5.356882 ACGAACATTCCATAAACACACAG 57.643 39.130 0.00 0.00 0.00 3.66
611 627 4.158384 CGAACATTCCATAAACACACAGC 58.842 43.478 0.00 0.00 0.00 4.40
612 628 4.485163 GAACATTCCATAAACACACAGCC 58.515 43.478 0.00 0.00 0.00 4.85
613 629 3.495331 ACATTCCATAAACACACAGCCA 58.505 40.909 0.00 0.00 0.00 4.75
614 630 4.088634 ACATTCCATAAACACACAGCCAT 58.911 39.130 0.00 0.00 0.00 4.40
615 631 4.527816 ACATTCCATAAACACACAGCCATT 59.472 37.500 0.00 0.00 0.00 3.16
616 632 4.517952 TTCCATAAACACACAGCCATTG 57.482 40.909 0.00 0.00 0.00 2.82
617 633 2.824936 TCCATAAACACACAGCCATTGG 59.175 45.455 0.00 0.00 0.00 3.16
655 671 0.749649 GGGAGCGAGATCACTGTCAT 59.250 55.000 0.00 0.00 0.00 3.06
659 675 0.460811 GCGAGATCACTGTCATGGCA 60.461 55.000 0.00 0.00 0.00 4.92
661 677 1.134877 CGAGATCACTGTCATGGCACT 60.135 52.381 0.00 0.00 0.00 4.40
825 849 2.544685 GCTCTGCATATATACTGGCCG 58.455 52.381 0.00 0.00 0.00 6.13
1000 1028 6.074088 CCTTTCTCGGTTATCTTCATTCGATG 60.074 42.308 0.00 0.00 0.00 3.84
1007 1035 2.691409 TCTTCATTCGATGTCCCCAC 57.309 50.000 0.00 0.00 0.00 4.61
1008 1036 1.905894 TCTTCATTCGATGTCCCCACA 59.094 47.619 0.00 0.00 36.78 4.17
1056 1097 2.287487 TGCGTAAACAGTGTACGTGCTA 60.287 45.455 21.80 6.42 44.79 3.49
1124 1170 1.495878 CGGGAGCAATGAAGATCTCG 58.504 55.000 0.00 0.00 41.79 4.04
1130 1176 3.196463 AGCAATGAAGATCTCGAGCTTG 58.804 45.455 7.81 0.00 37.15 4.01
1370 1416 1.734748 GTACCTGCTACTCCTCCGC 59.265 63.158 0.00 0.00 0.00 5.54
1372 1418 3.905678 CCTGCTACTCCTCCGCCG 61.906 72.222 0.00 0.00 0.00 6.46
1431 1480 1.454479 CATGGTGATCCTGGTGGCC 60.454 63.158 0.00 0.00 34.23 5.36
1533 1582 0.456142 TCGACATCTTCTTCGCCGTG 60.456 55.000 0.00 0.00 35.15 4.94
1656 1707 1.478631 ACCCACCTAACCTACGTAGC 58.521 55.000 17.41 0.00 0.00 3.58
1657 1708 1.006400 ACCCACCTAACCTACGTAGCT 59.994 52.381 17.41 8.69 0.00 3.32
1687 1738 1.376037 CCTTGTTCGGCAGTCCTCC 60.376 63.158 0.00 0.00 0.00 4.30
1694 1751 0.836400 TCGGCAGTCCTCCCTTCTTT 60.836 55.000 0.00 0.00 0.00 2.52
1750 1807 2.105649 TGTGCATGTTACCCACTTCTCA 59.894 45.455 0.00 0.00 0.00 3.27
1762 1819 4.141158 ACCCACTTCTCACCTCTCATTTTT 60.141 41.667 0.00 0.00 0.00 1.94
1781 1838 3.959535 TTCTTCCCAAATGAACATGGC 57.040 42.857 0.00 0.00 35.28 4.40
1927 2017 1.480954 ACGACGTCCAGCCTTTATGAT 59.519 47.619 10.58 0.00 0.00 2.45
1935 2025 1.891150 CAGCCTTTATGATGGATGGGC 59.109 52.381 0.17 0.00 36.23 5.36
1936 2026 0.883833 GCCTTTATGATGGATGGGCG 59.116 55.000 0.00 0.00 0.00 6.13
1938 2028 0.883833 CTTTATGATGGATGGGCGGC 59.116 55.000 0.00 0.00 0.00 6.53
1940 2030 1.426251 TTATGATGGATGGGCGGCCT 61.426 55.000 29.87 14.71 0.00 5.19
1941 2031 0.546507 TATGATGGATGGGCGGCCTA 60.547 55.000 29.87 14.40 0.00 3.93
1950 2060 1.897137 GGGCGGCCTAAAGTATGCC 60.897 63.158 22.87 2.83 41.85 4.40
1990 2100 9.396022 TCTTACTCCTGCTTAATTTATTTCCTG 57.604 33.333 0.00 0.00 0.00 3.86
2031 2141 6.323739 GTCTCCTAGATCCATTTCTCTTCTGT 59.676 42.308 0.00 0.00 0.00 3.41
2042 2152 9.113838 TCCATTTCTCTTCTGTTATTAGCAATC 57.886 33.333 0.00 0.00 0.00 2.67
2053 2163 6.356556 TGTTATTAGCAATCTAGCATGTGGT 58.643 36.000 0.00 0.00 36.85 4.16
2088 2198 3.876309 TGCCAACTTTTCTACTCCCTT 57.124 42.857 0.00 0.00 0.00 3.95
2089 2199 3.486383 TGCCAACTTTTCTACTCCCTTG 58.514 45.455 0.00 0.00 0.00 3.61
2147 2257 5.587388 TTGGGAGTAGTACTGTATTTCCG 57.413 43.478 7.76 0.00 0.00 4.30
2161 2273 0.750182 TTTCCGATCCCGAATTGCCC 60.750 55.000 0.00 0.00 38.22 5.36
2185 2297 4.801330 TGACGATGGGGATATATGTGTC 57.199 45.455 0.00 0.00 0.00 3.67
2245 2413 2.226437 CACTTGACACCTGGCATAACAC 59.774 50.000 0.00 0.00 30.06 3.32
2246 2414 2.158682 ACTTGACACCTGGCATAACACA 60.159 45.455 0.00 0.00 30.06 3.72
2251 2419 5.073428 TGACACCTGGCATAACACAAAATA 58.927 37.500 0.00 0.00 0.00 1.40
2314 2482 8.995027 AACCAATAGAATTACAATCAGCCATA 57.005 30.769 0.00 0.00 0.00 2.74
2345 2540 1.160329 ACAAGCTGTGCTCCGAACAC 61.160 55.000 0.00 0.00 38.25 3.32
2383 2578 4.530946 GCAAGACTATGGGCTACCCTATTA 59.469 45.833 3.93 0.00 45.70 0.98
2519 2714 2.625790 AGTGGTCCTAGCGAATCTGATC 59.374 50.000 0.00 0.00 0.00 2.92
2552 2747 4.678256 AGGAAGACTAGACCACTCAATGA 58.322 43.478 0.00 0.00 0.00 2.57
2561 2756 5.745312 AGACCACTCAATGACTAATGACA 57.255 39.130 0.00 0.00 0.00 3.58
2585 2780 8.840321 ACATTCCTATTTTGATGGAATAACTCG 58.160 33.333 6.21 0.00 45.56 4.18
2623 2818 2.362397 CGGAGCTAGGCAGAATCAACTA 59.638 50.000 0.00 0.00 0.00 2.24
2625 2820 3.244044 GGAGCTAGGCAGAATCAACTAGG 60.244 52.174 0.00 0.00 34.83 3.02
2626 2821 2.703007 AGCTAGGCAGAATCAACTAGGG 59.297 50.000 0.00 0.00 34.83 3.53
2627 2822 2.224402 GCTAGGCAGAATCAACTAGGGG 60.224 54.545 0.00 0.00 34.83 4.79
2628 2823 1.216990 AGGCAGAATCAACTAGGGGG 58.783 55.000 0.00 0.00 0.00 5.40
2629 2824 1.213296 GGCAGAATCAACTAGGGGGA 58.787 55.000 0.00 0.00 0.00 4.81
2630 2825 1.777272 GGCAGAATCAACTAGGGGGAT 59.223 52.381 0.00 0.00 0.00 3.85
2631 2826 2.487986 GGCAGAATCAACTAGGGGGATG 60.488 54.545 0.00 0.00 0.00 3.51
2632 2827 2.173569 GCAGAATCAACTAGGGGGATGT 59.826 50.000 0.00 0.00 0.00 3.06
2633 2828 3.745797 GCAGAATCAACTAGGGGGATGTC 60.746 52.174 0.00 0.00 0.00 3.06
2634 2829 3.455910 CAGAATCAACTAGGGGGATGTCA 59.544 47.826 0.00 0.00 0.00 3.58
2635 2830 4.080356 CAGAATCAACTAGGGGGATGTCAA 60.080 45.833 0.00 0.00 0.00 3.18
2636 2831 4.164988 AGAATCAACTAGGGGGATGTCAAG 59.835 45.833 0.00 0.00 0.00 3.02
2637 2832 2.915869 TCAACTAGGGGGATGTCAAGT 58.084 47.619 0.00 0.00 0.00 3.16
2638 2833 4.069312 TCAACTAGGGGGATGTCAAGTA 57.931 45.455 0.00 0.00 0.00 2.24
2639 2834 3.773119 TCAACTAGGGGGATGTCAAGTAC 59.227 47.826 0.00 0.00 0.00 2.73
2640 2835 3.484953 ACTAGGGGGATGTCAAGTACA 57.515 47.619 0.00 0.00 43.86 2.90
2641 2836 3.798515 ACTAGGGGGATGTCAAGTACAA 58.201 45.455 0.00 0.00 42.70 2.41
2642 2837 3.775316 ACTAGGGGGATGTCAAGTACAAG 59.225 47.826 0.00 0.00 42.70 3.16
2643 2838 2.632537 AGGGGGATGTCAAGTACAAGT 58.367 47.619 0.00 0.00 42.70 3.16
2644 2839 2.305927 AGGGGGATGTCAAGTACAAGTG 59.694 50.000 0.00 0.00 42.70 3.16
2645 2840 2.039879 GGGGGATGTCAAGTACAAGTGT 59.960 50.000 0.00 0.00 42.70 3.55
2646 2841 3.497942 GGGGGATGTCAAGTACAAGTGTT 60.498 47.826 0.00 0.00 42.70 3.32
2647 2842 4.142038 GGGGATGTCAAGTACAAGTGTTT 58.858 43.478 0.00 0.00 42.70 2.83
2648 2843 4.023193 GGGGATGTCAAGTACAAGTGTTTG 60.023 45.833 0.00 0.00 42.70 2.93
2649 2844 4.023193 GGGATGTCAAGTACAAGTGTTTGG 60.023 45.833 0.00 0.00 42.70 3.28
2650 2845 4.023193 GGATGTCAAGTACAAGTGTTTGGG 60.023 45.833 0.00 0.00 42.70 4.12
2651 2846 3.283751 TGTCAAGTACAAGTGTTTGGGG 58.716 45.455 0.00 0.00 38.66 4.96
2652 2847 2.621526 GTCAAGTACAAGTGTTTGGGGG 59.378 50.000 0.00 0.00 38.66 5.40
2653 2848 2.510382 TCAAGTACAAGTGTTTGGGGGA 59.490 45.455 0.00 0.00 38.66 4.81
2654 2849 2.884639 CAAGTACAAGTGTTTGGGGGAG 59.115 50.000 0.00 0.00 38.66 4.30
2655 2850 1.423921 AGTACAAGTGTTTGGGGGAGG 59.576 52.381 0.00 0.00 38.66 4.30
2656 2851 0.774908 TACAAGTGTTTGGGGGAGGG 59.225 55.000 0.00 0.00 38.66 4.30
2657 2852 1.228862 CAAGTGTTTGGGGGAGGGG 60.229 63.158 0.00 0.00 0.00 4.79
2658 2853 2.478803 AAGTGTTTGGGGGAGGGGG 61.479 63.158 0.00 0.00 0.00 5.40
2659 2854 3.190391 GTGTTTGGGGGAGGGGGT 61.190 66.667 0.00 0.00 0.00 4.95
2660 2855 3.189646 TGTTTGGGGGAGGGGGTG 61.190 66.667 0.00 0.00 0.00 4.61
2661 2856 3.992641 GTTTGGGGGAGGGGGTGG 61.993 72.222 0.00 0.00 0.00 4.61
3029 3392 6.607600 TCAGCACTGTCTCTTAGGTGTTATAT 59.392 38.462 0.00 0.00 32.90 0.86
3032 3395 7.124298 AGCACTGTCTCTTAGGTGTTATATGAA 59.876 37.037 0.00 0.00 32.90 2.57
3096 3459 5.014858 CCAAATAGATGAGCCATTGCCTAT 58.985 41.667 0.00 0.00 38.69 2.57
3101 3464 0.394192 TGAGCCATTGCCTATCCTCG 59.606 55.000 0.00 0.00 38.69 4.63
3120 3484 7.941431 TCCTCGAGACTAGTCTTTTCTTAAT 57.059 36.000 25.86 0.75 40.61 1.40
3191 3556 7.996066 TGCCTGTAAATACCAATCAATAAGCTA 59.004 33.333 0.00 0.00 0.00 3.32
3195 3560 7.722285 TGTAAATACCAATCAATAAGCTACCCC 59.278 37.037 0.00 0.00 0.00 4.95
3212 3577 5.713861 GCTACCCCTTAGGATAGTATTTCGA 59.286 44.000 0.00 0.00 39.89 3.71
3242 3607 1.746760 CGAGCACACAAACTTTCTGC 58.253 50.000 0.00 0.00 0.00 4.26
3312 3677 1.802136 GCTCTCATGTCTCTGAAGCCG 60.802 57.143 0.00 0.00 0.00 5.52
3325 3711 0.677098 GAAGCCGAACCCTCCCTTTC 60.677 60.000 0.00 0.00 0.00 2.62
3357 3743 0.771127 TAGGCTTGTCCCAAGCAACT 59.229 50.000 25.22 17.70 44.71 3.16
3370 3757 3.996363 CCAAGCAACTAAGCCATTTTTCC 59.004 43.478 0.00 0.00 34.23 3.13
3375 3762 5.305386 AGCAACTAAGCCATTTTTCCTCTTT 59.695 36.000 0.00 0.00 34.23 2.52
3377 3764 6.738453 GCAACTAAGCCATTTTTCCTCTTTCA 60.738 38.462 0.00 0.00 0.00 2.69
3407 3795 2.439880 TCCCCACCAATATTGACGCATA 59.560 45.455 17.23 0.00 0.00 3.14
3414 3802 7.040755 CCCACCAATATTGACGCATAATTCTAA 60.041 37.037 17.23 0.00 0.00 2.10
3490 3878 2.764010 TGGCCTGAGCTATCGACTTAAA 59.236 45.455 3.32 0.00 39.73 1.52
3528 3916 3.055094 AGAAGATGCCATGTACCTTTCGT 60.055 43.478 0.00 0.00 0.00 3.85
3536 3924 3.306780 CCATGTACCTTTCGTTCCAGTCT 60.307 47.826 0.00 0.00 0.00 3.24
3543 3931 2.060326 TTCGTTCCAGTCTACAAGCG 57.940 50.000 0.00 0.00 0.00 4.68
3622 4010 3.941483 ACTTGGGATCAAATACTTGCTCG 59.059 43.478 0.00 0.00 29.97 5.03
3637 4025 5.010282 ACTTGCTCGGTAATCTCCAAAATT 58.990 37.500 0.00 0.00 0.00 1.82
3655 4043 5.893897 AAATTCTCTTCACCTCTTGCATC 57.106 39.130 0.00 0.00 0.00 3.91
3670 4058 5.946298 TCTTGCATCACATGAAATCTTGAC 58.054 37.500 0.00 0.00 30.00 3.18
3671 4059 5.474189 TCTTGCATCACATGAAATCTTGACA 59.526 36.000 0.00 0.00 30.00 3.58
3722 4110 2.934886 ACCTTACGTGGCCAAACTTA 57.065 45.000 7.24 0.00 0.00 2.24
3769 4181 6.986231 AGAAAAGGCAATTGACGAAAAGAAAT 59.014 30.769 10.34 0.00 0.00 2.17
3777 4189 8.000435 GCAATTGACGAAAAGAAATTTGAGAAG 59.000 33.333 10.34 0.00 0.00 2.85
3825 4237 0.032912 AAGGACCCAAACCAAACCGT 60.033 50.000 0.00 0.00 0.00 4.83
3876 4291 1.069765 CAGAACACGGGCACTCTGT 59.930 57.895 4.30 0.00 32.38 3.41
3948 4363 3.640967 TCCTGTTCCTTTTTGGTGGATTG 59.359 43.478 0.00 0.00 37.07 2.67
4005 4421 2.618053 GACAGGGTCCACAAAGATACG 58.382 52.381 0.00 0.00 0.00 3.06
4302 4736 0.245266 TCAAGCAACAGCCATGCATG 59.755 50.000 20.19 20.19 46.22 4.06
4349 4783 2.827800 ATCGATCGACAATGGCTGAT 57.172 45.000 22.06 0.00 0.00 2.90
4356 4791 1.667724 CGACAATGGCTGATCTGAACC 59.332 52.381 3.42 0.00 0.00 3.62
4362 4797 1.278985 TGGCTGATCTGAACCGATTGT 59.721 47.619 3.42 0.00 0.00 2.71
4407 4842 1.625818 AGGTTCAGCTACTTCTGGGTG 59.374 52.381 0.00 0.00 34.91 4.61
4757 5277 3.000727 CCATGGAGTTCGTAAGTTCCAC 58.999 50.000 5.56 0.00 42.65 4.02
4765 5313 5.048507 AGTTCGTAAGTTCCACTTCTGAAC 58.951 41.667 17.74 17.74 44.29 3.18
4779 5327 1.207089 TCTGAACCTCGATCGCCATTT 59.793 47.619 11.09 0.27 0.00 2.32
4780 5328 2.009774 CTGAACCTCGATCGCCATTTT 58.990 47.619 11.09 0.00 0.00 1.82
4805 5353 5.532557 TGTGAGTACATCTGTTGAGTTGAG 58.467 41.667 0.00 0.00 0.00 3.02
4808 5356 6.144724 GTGAGTACATCTGTTGAGTTGAGTTC 59.855 42.308 0.00 0.00 0.00 3.01
4814 5362 5.818136 TCTGTTGAGTTGAGTTCCTTTTG 57.182 39.130 0.00 0.00 0.00 2.44
4820 5368 4.037923 TGAGTTGAGTTCCTTTTGATTGGC 59.962 41.667 0.00 0.00 0.00 4.52
4823 5371 2.892852 TGAGTTCCTTTTGATTGGCTGG 59.107 45.455 0.00 0.00 0.00 4.85
4827 5375 0.390735 CCTTTTGATTGGCTGGCAGC 60.391 55.000 30.93 30.93 41.46 5.25
5291 5839 3.379445 TTCCGGACCAGGACGCTC 61.379 66.667 1.83 0.00 40.56 5.03
5449 6023 2.221169 GTGTGTCAGATGTGGCAAGAA 58.779 47.619 0.00 0.00 40.92 2.52
5450 6024 2.618241 GTGTGTCAGATGTGGCAAGAAA 59.382 45.455 0.00 0.00 40.92 2.52
5451 6025 2.880268 TGTGTCAGATGTGGCAAGAAAG 59.120 45.455 0.00 0.00 40.92 2.62
5452 6026 3.141398 GTGTCAGATGTGGCAAGAAAGA 58.859 45.455 0.00 0.00 40.92 2.52
5473 6047 8.627208 AAAGATTGTGAGTCAGTAATGTGATT 57.373 30.769 7.16 0.00 0.00 2.57
5477 6051 7.566760 TTGTGAGTCAGTAATGTGATTTGTT 57.433 32.000 0.00 0.00 0.00 2.83
5485 6059 7.704472 GTCAGTAATGTGATTTGTTGGTTGAAA 59.296 33.333 0.00 0.00 0.00 2.69
5491 6065 7.536895 TGTGATTTGTTGGTTGAAAGAAATG 57.463 32.000 0.00 0.00 34.28 2.32
5536 6110 2.286872 GAGGTGCATGACATGAAGGAG 58.713 52.381 19.76 0.00 0.00 3.69
5715 6298 6.876155 TGGTAAGTAGACAAACAACACACTA 58.124 36.000 0.00 0.00 0.00 2.74
5716 6299 7.502696 TGGTAAGTAGACAAACAACACACTAT 58.497 34.615 0.00 0.00 0.00 2.12
5717 6300 7.988599 TGGTAAGTAGACAAACAACACACTATT 59.011 33.333 0.00 0.00 0.00 1.73
5718 6301 8.833493 GGTAAGTAGACAAACAACACACTATTT 58.167 33.333 0.00 0.00 0.00 1.40
5760 6343 0.516001 CAGTGTGTGTGCTGATCTGC 59.484 55.000 16.98 16.98 34.87 4.26
5761 6344 0.107268 AGTGTGTGTGCTGATCTGCA 59.893 50.000 21.87 21.87 41.05 4.41
5762 6345 1.162698 GTGTGTGTGCTGATCTGCAT 58.837 50.000 27.16 0.00 45.23 3.96
5763 6346 1.135774 GTGTGTGTGCTGATCTGCATG 60.136 52.381 27.16 0.00 45.23 4.06
5764 6347 0.179171 GTGTGTGCTGATCTGCATGC 60.179 55.000 27.16 21.80 45.23 4.06
5792 6380 0.523072 CCTGTTCTTGGCAACGATGG 59.477 55.000 0.00 0.00 42.51 3.51
5907 6497 7.109123 CGTAATAGTAACAACAAACACAACACG 59.891 37.037 0.00 0.00 0.00 4.49
5910 6500 5.860641 AGTAACAACAAACACAACACGTAG 58.139 37.500 0.00 0.00 0.00 3.51
5912 6502 5.359716 AACAACAAACACAACACGTAGAA 57.640 34.783 0.00 0.00 0.00 2.10
5914 6504 6.665474 ACAACAAACACAACACGTAGAATA 57.335 33.333 0.00 0.00 0.00 1.75
5915 6505 6.480285 ACAACAAACACAACACGTAGAATAC 58.520 36.000 0.00 0.00 38.50 1.89
5916 6506 6.092396 ACAACAAACACAACACGTAGAATACA 59.908 34.615 0.00 0.00 43.24 2.29
5928 6518 4.561606 ACGTAGAATACATTTCAGTGCGAC 59.438 41.667 0.00 0.00 43.24 5.19
6169 6763 4.477975 CGACTCCGAGGACCACGC 62.478 72.222 5.72 0.00 38.22 5.34
6261 6855 4.641645 CCAGCGTGGACAAGGCCA 62.642 66.667 5.01 0.00 40.96 5.36
6262 6856 3.052082 CAGCGTGGACAAGGCCAG 61.052 66.667 5.01 0.00 40.67 4.85
6445 7042 2.398919 GGAGGTTCCCAATCCCAGT 58.601 57.895 0.00 0.00 0.00 4.00
6456 7053 0.247736 AATCCCAGTCAGCACGAGAC 59.752 55.000 0.00 0.00 36.26 3.36
6465 7068 4.357947 GCACGAGACCGGACAGCA 62.358 66.667 9.46 0.00 40.78 4.41
6528 7131 1.347707 TGAGAAACCACAGCTCCGAAT 59.652 47.619 0.00 0.00 0.00 3.34
6685 7294 5.807011 GCAATGAAAAACGAGGAATTAGCAT 59.193 36.000 0.00 0.00 0.00 3.79
6686 7295 6.311200 GCAATGAAAAACGAGGAATTAGCATT 59.689 34.615 0.00 0.00 0.00 3.56
6701 7311 3.338818 AGCATTTCAAACGTCTGTGTG 57.661 42.857 0.00 0.00 34.39 3.82
6704 7314 3.730662 GCATTTCAAACGTCTGTGTGTGT 60.731 43.478 0.00 0.00 34.72 3.72
6705 7315 3.463533 TTTCAAACGTCTGTGTGTGTG 57.536 42.857 0.00 0.00 34.72 3.82
6748 7358 4.415332 GTCGACGCGGAGAAGGCA 62.415 66.667 12.47 0.00 0.00 4.75
6820 7430 3.064207 GGACAACGACAAGCTGTTCATA 58.936 45.455 0.00 0.00 0.00 2.15
6889 7504 1.004927 GCTTTATCGCACACATCGTCC 60.005 52.381 0.00 0.00 0.00 4.79
6918 7533 1.443194 CTGTTTCAGCGGCACATGC 60.443 57.895 1.45 0.00 41.14 4.06
6945 7560 6.981762 ATAATTCTGATATGTGCTAGCTGC 57.018 37.500 17.23 9.49 43.25 5.25
6976 7597 3.580458 TCTCTAGCCCTGAATAATCCAGC 59.420 47.826 0.00 0.00 0.00 4.85
6981 7602 2.560105 GCCCTGAATAATCCAGCCATTC 59.440 50.000 0.00 0.00 0.00 2.67
7011 7632 2.290641 ACGATTCAAGCAAGGTGACAAC 59.709 45.455 0.00 0.00 0.00 3.32
7046 7668 4.097741 TGATTTGCGATGTTTCCCCTTATG 59.902 41.667 0.00 0.00 0.00 1.90
7056 7678 3.686227 TTCCCCTTATGCATGGACAAT 57.314 42.857 10.16 0.00 0.00 2.71
7060 7682 4.074970 CCCCTTATGCATGGACAATAGTC 58.925 47.826 10.16 0.00 44.21 2.59
7127 7749 3.826236 GCAGATGCATGGATGATGTAC 57.174 47.619 2.46 0.00 41.59 2.90
7128 7750 2.159037 GCAGATGCATGGATGATGTACG 59.841 50.000 2.46 0.00 41.59 3.67
7130 7752 3.185797 CAGATGCATGGATGATGTACGTG 59.814 47.826 2.46 0.00 34.14 4.49
7169 7791 8.618702 AGAAAATGGATGATGTAGACATGATC 57.381 34.615 12.16 12.16 43.32 2.92
7174 7796 4.021981 GGATGATGTAGACATGATCGGACA 60.022 45.833 13.64 4.43 44.44 4.02
7203 7825 2.579410 TCCTTAAGTTGGCTTCACCC 57.421 50.000 0.97 0.00 37.83 4.61
7272 7894 1.532007 CATGCAACAATGTGGTTTGCC 59.468 47.619 5.46 0.00 0.00 4.52
7300 7937 6.375174 TGAGCATTAGAGCTTAAGCATTTCAA 59.625 34.615 28.39 14.59 46.75 2.69
7301 7938 7.067859 TGAGCATTAGAGCTTAAGCATTTCAAT 59.932 33.333 28.39 16.00 46.75 2.57
7302 7939 7.779073 AGCATTAGAGCTTAAGCATTTCAATT 58.221 30.769 28.39 5.74 43.70 2.32
7310 7947 5.068329 GCTTAAGCATTTCAATTAGAGCCCT 59.932 40.000 22.59 0.00 41.59 5.19
7318 7955 7.655490 CATTTCAATTAGAGCCCTTTAGGATG 58.345 38.462 0.00 0.00 38.24 3.51
7319 7956 4.718961 TCAATTAGAGCCCTTTAGGATGC 58.281 43.478 0.00 0.00 38.24 3.91
7320 7957 4.165950 TCAATTAGAGCCCTTTAGGATGCA 59.834 41.667 0.00 0.00 38.24 3.96
7321 7958 5.075493 CAATTAGAGCCCTTTAGGATGCAT 58.925 41.667 0.00 0.00 38.24 3.96
7322 7959 2.653234 AGAGCCCTTTAGGATGCATG 57.347 50.000 2.46 0.00 38.24 4.06
7323 7960 1.849039 AGAGCCCTTTAGGATGCATGT 59.151 47.619 2.46 0.00 38.24 3.21
7324 7961 2.243221 AGAGCCCTTTAGGATGCATGTT 59.757 45.455 2.46 0.00 38.24 2.71
7340 7977 6.012658 TGCATGTTAAATTCACTGAGGAAC 57.987 37.500 0.00 0.00 0.00 3.62
7353 7990 3.243771 ACTGAGGAACTGTGGAACTTACG 60.244 47.826 0.00 0.00 41.55 3.18
7354 7991 2.067013 GAGGAACTGTGGAACTTACGC 58.933 52.381 0.00 0.00 41.55 4.42
7383 8020 2.561373 CAGCGTTTCCTTTCCCGC 59.439 61.111 0.00 0.00 46.07 6.13
7457 8107 9.624697 CCGTTTTCATTGATTAAGAAAGAATGA 57.375 29.630 0.00 0.00 33.35 2.57
7520 8170 5.666462 TCTAGCGGCATTACATTACTCAAA 58.334 37.500 1.45 0.00 0.00 2.69
7533 8183 2.779755 ACTCAAATGTATGGCACCGA 57.220 45.000 0.00 0.00 0.00 4.69
7546 8196 1.830408 CACCGACAAGGGCCCAAAA 60.830 57.895 27.56 0.00 46.96 2.44
7585 8235 3.002791 TCCTCGCAAAGACAATCATCAC 58.997 45.455 0.00 0.00 0.00 3.06
7590 8240 4.940654 TCGCAAAGACAATCATCACCATAA 59.059 37.500 0.00 0.00 0.00 1.90
7643 8293 4.082125 GCTCTTTCCAAATCTCCCAAGAA 58.918 43.478 0.00 0.00 34.49 2.52
7706 8356 5.964751 TGCACGATCAATCACATTTTAATCG 59.035 36.000 0.00 0.00 35.46 3.34
7725 8375 1.270550 CGCCAATCTCAAACCAAAGCT 59.729 47.619 0.00 0.00 0.00 3.74
7746 8396 1.967779 TCAAACCGTCAGATCCTCACA 59.032 47.619 0.00 0.00 0.00 3.58
7750 8400 1.000955 ACCGTCAGATCCTCACAACAC 59.999 52.381 0.00 0.00 0.00 3.32
7754 8404 3.191581 CGTCAGATCCTCACAACACTAGT 59.808 47.826 0.00 0.00 0.00 2.57
7771 8421 4.100963 CACTAGTATGTAGGCCAATCCACA 59.899 45.833 5.01 0.58 37.29 4.17
7785 8435 0.981183 TCCACATAGCAACCTCGGTT 59.019 50.000 0.00 0.00 39.13 4.44
7805 8457 0.970937 CAGACCGCCAGGAGAACCTA 60.971 60.000 0.00 0.00 45.94 3.08
7840 8492 2.362503 TGTCGCGGTCTCCTCCAT 60.363 61.111 6.13 0.00 0.00 3.41
7847 8499 1.826385 CGGTCTCCTCCATTTGCTTT 58.174 50.000 0.00 0.00 0.00 3.51
7848 8500 1.740025 CGGTCTCCTCCATTTGCTTTC 59.260 52.381 0.00 0.00 0.00 2.62
7850 8502 2.751806 GGTCTCCTCCATTTGCTTTCAG 59.248 50.000 0.00 0.00 0.00 3.02
7851 8503 3.560025 GGTCTCCTCCATTTGCTTTCAGA 60.560 47.826 0.00 0.00 0.00 3.27
7852 8504 3.688673 GTCTCCTCCATTTGCTTTCAGAG 59.311 47.826 0.00 0.00 0.00 3.35
7865 8517 2.949177 TTCAGAGCAGGCAAAGGTTA 57.051 45.000 0.00 0.00 0.00 2.85
7866 8518 3.439857 TTCAGAGCAGGCAAAGGTTAT 57.560 42.857 0.00 0.00 0.00 1.89
7880 8532 2.557869 AGGTTATAGTTCTGGCACCCA 58.442 47.619 0.00 0.00 0.00 4.51
7883 8535 3.270877 GTTATAGTTCTGGCACCCACAG 58.729 50.000 0.00 0.00 37.30 3.66
7884 8536 1.656587 ATAGTTCTGGCACCCACAGA 58.343 50.000 0.00 0.00 42.81 3.41
7897 8549 4.309099 CACCCACAGAAAAATGATGTTGG 58.691 43.478 0.00 0.00 36.18 3.77
7914 8566 3.563808 TGTTGGTCATTTCCAGAAGAACG 59.436 43.478 0.00 0.00 38.80 3.95
7918 8570 3.610911 GTCATTTCCAGAAGAACGGGAT 58.389 45.455 0.00 0.00 42.00 3.85
7948 8600 9.629878 TTTAGGTTCATTCCTAACAAAACAGTA 57.370 29.630 4.91 0.00 45.95 2.74
7980 8632 3.931578 AGAGGAAAATCAGGTCGTCTTG 58.068 45.455 0.00 0.00 35.94 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.247229 ACCCTAAAATTTTGAGCCAGTTTT 57.753 33.333 13.76 0.00 0.00 2.43
82 83 4.261447 GCATATTTTGATGGGGTCCGTAAC 60.261 45.833 0.00 0.00 0.00 2.50
162 173 3.280295 TCTTGGTTGCTTCGGTTGTTTA 58.720 40.909 0.00 0.00 0.00 2.01
163 174 2.096248 TCTTGGTTGCTTCGGTTGTTT 58.904 42.857 0.00 0.00 0.00 2.83
164 175 1.757682 TCTTGGTTGCTTCGGTTGTT 58.242 45.000 0.00 0.00 0.00 2.83
171 182 3.311966 GTTCTGCATTCTTGGTTGCTTC 58.688 45.455 0.00 0.00 39.60 3.86
174 185 1.340889 TGGTTCTGCATTCTTGGTTGC 59.659 47.619 0.00 0.00 39.33 4.17
221 232 6.527722 GTCATGCAATATCTCGCAAAGAAAAA 59.472 34.615 0.00 0.00 42.37 1.94
222 233 6.029607 GTCATGCAATATCTCGCAAAGAAAA 58.970 36.000 0.00 0.00 42.37 2.29
223 234 5.123661 TGTCATGCAATATCTCGCAAAGAAA 59.876 36.000 0.00 0.00 42.37 2.52
224 235 4.635324 TGTCATGCAATATCTCGCAAAGAA 59.365 37.500 0.00 0.00 42.37 2.52
225 236 4.190772 TGTCATGCAATATCTCGCAAAGA 58.809 39.130 0.00 0.00 42.37 2.52
226 237 4.541085 TGTCATGCAATATCTCGCAAAG 57.459 40.909 0.00 0.00 42.37 2.77
227 238 6.806388 ATATGTCATGCAATATCTCGCAAA 57.194 33.333 0.00 0.00 42.37 3.68
228 239 6.806388 AATATGTCATGCAATATCTCGCAA 57.194 33.333 0.00 0.00 42.37 4.85
229 240 6.427547 TCAAATATGTCATGCAATATCTCGCA 59.572 34.615 0.00 0.00 43.45 5.10
230 241 6.834876 TCAAATATGTCATGCAATATCTCGC 58.165 36.000 0.00 0.00 0.00 5.03
231 242 8.284693 TGTTCAAATATGTCATGCAATATCTCG 58.715 33.333 0.00 0.00 0.00 4.04
232 243 9.955208 TTGTTCAAATATGTCATGCAATATCTC 57.045 29.630 0.00 0.00 0.00 2.75
233 244 9.961265 CTTGTTCAAATATGTCATGCAATATCT 57.039 29.630 0.00 0.00 0.00 1.98
234 245 8.697067 GCTTGTTCAAATATGTCATGCAATATC 58.303 33.333 0.00 0.00 35.34 1.63
235 246 8.198778 TGCTTGTTCAAATATGTCATGCAATAT 58.801 29.630 0.00 0.00 38.34 1.28
236 247 7.488792 GTGCTTGTTCAAATATGTCATGCAATA 59.511 33.333 0.00 0.00 40.27 1.90
264 275 4.075682 TGGTGTCAACTTGTTTCTTCACA 58.924 39.130 0.00 0.00 0.00 3.58
344 356 4.759782 CTTCTCCATGTTTATCACGACCT 58.240 43.478 0.00 0.00 0.00 3.85
419 431 0.950555 TGATTGGAGACAGTGCACGC 60.951 55.000 12.01 5.22 44.54 5.34
431 443 8.800370 TTTGTACTAGCACATAATTGATTGGA 57.200 30.769 0.00 0.00 0.00 3.53
516 532 0.972983 TGCCTACCTCTCTGTCTGCC 60.973 60.000 0.00 0.00 0.00 4.85
525 541 1.229658 AGCCCAGTTGCCTACCTCT 60.230 57.895 0.00 0.00 0.00 3.69
536 552 4.437587 GCAGATGCCCAGCCCAGT 62.438 66.667 0.00 0.00 34.31 4.00
537 553 3.733507 ATGCAGATGCCCAGCCCAG 62.734 63.158 1.72 0.00 41.18 4.45
538 554 3.746436 ATGCAGATGCCCAGCCCA 61.746 61.111 1.72 0.00 41.18 5.36
539 555 3.224324 CATGCAGATGCCCAGCCC 61.224 66.667 1.72 0.00 41.18 5.19
540 556 3.224324 CCATGCAGATGCCCAGCC 61.224 66.667 1.72 0.00 41.18 4.85
541 557 2.124024 TCCATGCAGATGCCCAGC 60.124 61.111 1.72 0.00 41.18 4.85
542 558 1.826921 GGTCCATGCAGATGCCCAG 60.827 63.158 1.72 0.00 41.18 4.45
545 561 2.903855 CGGGTCCATGCAGATGCC 60.904 66.667 1.72 0.00 41.18 4.40
546 562 2.903855 CCGGGTCCATGCAGATGC 60.904 66.667 0.00 0.00 42.50 3.91
547 563 2.203252 CCCGGGTCCATGCAGATG 60.203 66.667 14.18 0.00 0.00 2.90
548 564 3.492353 CCCCGGGTCCATGCAGAT 61.492 66.667 21.85 0.00 0.00 2.90
569 585 0.036732 TTGATGTGGACTGTGGAGCC 59.963 55.000 0.00 0.00 0.00 4.70
570 586 1.160137 GTTGATGTGGACTGTGGAGC 58.840 55.000 0.00 0.00 0.00 4.70
571 587 1.000843 TCGTTGATGTGGACTGTGGAG 59.999 52.381 0.00 0.00 0.00 3.86
572 588 1.044611 TCGTTGATGTGGACTGTGGA 58.955 50.000 0.00 0.00 0.00 4.02
573 589 1.531149 GTTCGTTGATGTGGACTGTGG 59.469 52.381 0.00 0.00 0.00 4.17
574 590 2.209273 TGTTCGTTGATGTGGACTGTG 58.791 47.619 0.00 0.00 0.00 3.66
575 591 2.613026 TGTTCGTTGATGTGGACTGT 57.387 45.000 0.00 0.00 0.00 3.55
578 594 2.811431 TGGAATGTTCGTTGATGTGGAC 59.189 45.455 0.00 0.00 0.00 4.02
592 608 3.495331 TGGCTGTGTGTTTATGGAATGT 58.505 40.909 0.00 0.00 0.00 2.71
611 627 1.873698 GCTATTGCCAATGCCAATGG 58.126 50.000 0.00 0.00 41.08 3.16
623 639 1.160137 CGCTCCCAATAGGCTATTGC 58.840 55.000 32.40 23.15 43.19 3.56
624 640 2.300152 TCTCGCTCCCAATAGGCTATTG 59.700 50.000 31.35 31.35 43.94 1.90
625 641 2.609747 TCTCGCTCCCAATAGGCTATT 58.390 47.619 13.96 13.96 34.51 1.73
626 642 2.310779 TCTCGCTCCCAATAGGCTAT 57.689 50.000 0.00 0.00 34.51 2.97
627 643 2.171840 GATCTCGCTCCCAATAGGCTA 58.828 52.381 0.00 0.00 34.51 3.93
628 644 0.972883 GATCTCGCTCCCAATAGGCT 59.027 55.000 0.00 0.00 34.51 4.58
629 645 0.681733 TGATCTCGCTCCCAATAGGC 59.318 55.000 0.00 0.00 34.51 3.93
655 671 1.338105 CCGAGAGAATTCACAGTGCCA 60.338 52.381 8.44 0.00 0.00 4.92
659 675 0.976641 TGGCCGAGAGAATTCACAGT 59.023 50.000 8.44 0.00 0.00 3.55
661 677 0.684535 TGTGGCCGAGAGAATTCACA 59.315 50.000 8.44 0.00 33.48 3.58
686 702 0.393820 ACAACGACCGGTGGTATGTT 59.606 50.000 23.34 10.85 35.25 2.71
690 706 2.029369 GCACAACGACCGGTGGTA 59.971 61.111 23.34 0.00 35.25 3.25
1000 1028 5.193679 AGCTAACATAATTCTTGTGGGGAC 58.806 41.667 0.00 0.00 0.00 4.46
1007 1035 6.477033 ACTCGTGCTAGCTAACATAATTCTTG 59.523 38.462 17.23 0.00 0.00 3.02
1008 1036 6.477033 CACTCGTGCTAGCTAACATAATTCTT 59.523 38.462 17.23 0.00 0.00 2.52
1056 1097 7.934855 TCTAATTGGAGAACTAACTAGACGT 57.065 36.000 0.00 0.00 0.00 4.34
1086 1127 2.164026 GCGAAGAAGAGCTGCCTCG 61.164 63.158 0.00 0.00 43.05 4.63
1267 1313 1.592223 GAGTCGGAAGTGGACTGGG 59.408 63.158 0.00 0.00 44.41 4.45
1370 1416 4.876107 ACCATTAGCATTCTTGTAAGACGG 59.124 41.667 0.00 0.00 34.13 4.79
1372 1418 8.398665 CCTAAACCATTAGCATTCTTGTAAGAC 58.601 37.037 0.00 0.00 37.74 3.01
1431 1480 1.138247 GTACACCCACGCCGAGTAG 59.862 63.158 0.00 0.00 0.00 2.57
1621 1670 2.014128 TGGGTAAGCCGTACTACGTAC 58.986 52.381 7.79 4.08 40.58 3.67
1622 1671 2.014128 GTGGGTAAGCCGTACTACGTA 58.986 52.381 7.79 0.00 40.58 3.57
1623 1672 0.811281 GTGGGTAAGCCGTACTACGT 59.189 55.000 7.79 0.00 40.58 3.57
1656 1707 3.423571 CGAACAAGGTAGCACGTACTAG 58.576 50.000 0.00 0.00 0.00 2.57
1657 1708 2.162208 CCGAACAAGGTAGCACGTACTA 59.838 50.000 0.00 0.00 0.00 1.82
1687 1738 3.384467 TGCAACTCCAAGGAAAAAGAAGG 59.616 43.478 0.00 0.00 0.00 3.46
1694 1751 2.892852 CCTTCATGCAACTCCAAGGAAA 59.107 45.455 0.00 0.00 36.48 3.13
1727 1784 3.561143 AGAAGTGGGTAACATGCACAAA 58.439 40.909 0.00 0.00 39.74 2.83
1750 1807 6.077322 TCATTTGGGAAGAAAAATGAGAGGT 58.923 36.000 6.70 0.00 44.05 3.85
1762 1819 2.886913 TGCCATGTTCATTTGGGAAGA 58.113 42.857 0.00 0.00 33.40 2.87
1781 1838 7.149307 TGAAAACATGCATATATCTTGCCATG 58.851 34.615 0.00 11.80 39.39 3.66
1917 2007 0.883833 CGCCCATCCATCATAAAGGC 59.116 55.000 0.00 0.00 35.55 4.35
1927 2017 0.983905 TACTTTAGGCCGCCCATCCA 60.984 55.000 5.55 0.00 0.00 3.41
1933 2023 3.745912 GGCATACTTTAGGCCGCC 58.254 61.111 0.00 0.00 46.38 6.13
1938 2028 5.120830 GCACAATATCTCGGCATACTTTAGG 59.879 44.000 0.00 0.00 0.00 2.69
1940 2030 5.606505 TGCACAATATCTCGGCATACTTTA 58.393 37.500 0.00 0.00 0.00 1.85
1941 2031 4.450976 TGCACAATATCTCGGCATACTTT 58.549 39.130 0.00 0.00 0.00 2.66
1950 2060 5.632764 CAGGAGTAAGATGCACAATATCTCG 59.367 44.000 0.00 0.00 33.92 4.04
2031 2141 6.262944 CCAACCACATGCTAGATTGCTAATAA 59.737 38.462 0.00 0.00 0.00 1.40
2042 2152 5.248870 GGTTTTATCCAACCACATGCTAG 57.751 43.478 0.00 0.00 45.12 3.42
2053 2163 5.559148 AGTTGGCATTTGGTTTTATCCAA 57.441 34.783 0.00 0.00 44.48 3.53
2088 2198 8.425237 AATGTGCATCAATTAATATGGATCCA 57.575 30.769 18.88 18.88 0.00 3.41
2116 2226 7.312415 ACAGTACTACTCCCAAAAGTTGTAT 57.688 36.000 0.00 0.00 38.87 2.29
2126 2236 4.858850 TCGGAAATACAGTACTACTCCCA 58.141 43.478 0.00 0.00 0.00 4.37
2127 2237 5.048154 GGATCGGAAATACAGTACTACTCCC 60.048 48.000 0.00 0.00 0.00 4.30
2137 2247 3.058914 GCAATTCGGGATCGGAAATACAG 60.059 47.826 2.44 0.00 36.95 2.74
2147 2257 0.250295 TCATCGGGCAATTCGGGATC 60.250 55.000 0.00 0.00 0.00 3.36
2161 2273 4.142160 ACACATATATCCCCATCGTCATCG 60.142 45.833 0.00 0.00 38.55 3.84
2261 2429 6.699575 ATAAAAATTCCCTGATTCCTCGTG 57.300 37.500 0.00 0.00 0.00 4.35
2262 2430 6.321435 GGAATAAAAATTCCCTGATTCCTCGT 59.679 38.462 5.95 0.00 43.26 4.18
2314 2482 2.294233 CACAGCTTGTTGGTTGCATAGT 59.706 45.455 0.00 0.00 0.00 2.12
2345 2540 1.202302 TCTTGCGAACTATGCTCGGAG 60.202 52.381 0.00 0.00 37.93 4.63
2383 2578 9.466497 AAACATTGTAAGATTGGTAGATCACAT 57.534 29.630 0.00 0.00 0.00 3.21
2519 2714 5.921408 GGTCTAGTCTTCCTATTATTGTGCG 59.079 44.000 0.00 0.00 0.00 5.34
2552 2747 9.699410 TTCCATCAAAATAGGAATGTCATTAGT 57.301 29.630 0.00 0.00 36.55 2.24
2575 2770 3.192844 TGACAGAGTGTCCGAGTTATTCC 59.807 47.826 4.65 0.00 46.40 3.01
2579 2774 3.056821 CCATTGACAGAGTGTCCGAGTTA 60.057 47.826 4.65 0.00 46.40 2.24
2585 2780 1.021390 CCGCCATTGACAGAGTGTCC 61.021 60.000 4.65 0.00 46.40 4.02
2598 2793 1.414061 ATTCTGCCTAGCTCCGCCAT 61.414 55.000 0.00 0.00 0.00 4.40
2602 2797 1.137872 AGTTGATTCTGCCTAGCTCCG 59.862 52.381 0.00 0.00 0.00 4.63
2617 2812 2.915869 ACTTGACATCCCCCTAGTTGA 58.084 47.619 0.00 0.00 0.00 3.18
2620 2815 3.484953 TGTACTTGACATCCCCCTAGT 57.515 47.619 0.00 0.00 31.20 2.57
2623 2818 2.305927 CACTTGTACTTGACATCCCCCT 59.694 50.000 0.00 0.00 38.07 4.79
2625 2820 3.418684 ACACTTGTACTTGACATCCCC 57.581 47.619 0.00 0.00 38.07 4.81
2626 2821 4.023193 CCAAACACTTGTACTTGACATCCC 60.023 45.833 0.00 0.00 38.07 3.85
2627 2822 4.023193 CCCAAACACTTGTACTTGACATCC 60.023 45.833 0.00 0.00 38.07 3.51
2628 2823 4.023193 CCCCAAACACTTGTACTTGACATC 60.023 45.833 0.00 0.00 38.07 3.06
2629 2824 3.888930 CCCCAAACACTTGTACTTGACAT 59.111 43.478 0.00 0.00 38.07 3.06
2630 2825 3.283751 CCCCAAACACTTGTACTTGACA 58.716 45.455 0.00 0.00 35.78 3.58
2631 2826 2.621526 CCCCCAAACACTTGTACTTGAC 59.378 50.000 0.00 0.00 0.00 3.18
2632 2827 2.510382 TCCCCCAAACACTTGTACTTGA 59.490 45.455 0.00 0.00 0.00 3.02
2633 2828 2.884639 CTCCCCCAAACACTTGTACTTG 59.115 50.000 0.00 0.00 0.00 3.16
2634 2829 2.158519 CCTCCCCCAAACACTTGTACTT 60.159 50.000 0.00 0.00 0.00 2.24
2635 2830 1.423921 CCTCCCCCAAACACTTGTACT 59.576 52.381 0.00 0.00 0.00 2.73
2636 2831 1.546998 CCCTCCCCCAAACACTTGTAC 60.547 57.143 0.00 0.00 0.00 2.90
2637 2832 0.774908 CCCTCCCCCAAACACTTGTA 59.225 55.000 0.00 0.00 0.00 2.41
2638 2833 1.541672 CCCTCCCCCAAACACTTGT 59.458 57.895 0.00 0.00 0.00 3.16
2639 2834 1.228862 CCCCTCCCCCAAACACTTG 60.229 63.158 0.00 0.00 0.00 3.16
2640 2835 2.478803 CCCCCTCCCCCAAACACTT 61.479 63.158 0.00 0.00 0.00 3.16
2641 2836 2.863988 CCCCCTCCCCCAAACACT 60.864 66.667 0.00 0.00 0.00 3.55
2642 2837 3.190391 ACCCCCTCCCCCAAACAC 61.190 66.667 0.00 0.00 0.00 3.32
2643 2838 3.189646 CACCCCCTCCCCCAAACA 61.190 66.667 0.00 0.00 0.00 2.83
2644 2839 3.992641 CCACCCCCTCCCCCAAAC 61.993 72.222 0.00 0.00 0.00 2.93
3006 3369 6.607600 TCATATAACACCTAAGAGACAGTGCT 59.392 38.462 0.00 0.00 33.46 4.40
3029 3392 0.772124 AGGGGAGCACCTTTCCTTCA 60.772 55.000 0.00 0.00 37.69 3.02
3032 3395 2.294078 CGAGGGGAGCACCTTTCCT 61.294 63.158 0.00 0.00 42.10 3.36
3096 3459 7.941431 ATTAAGAAAAGACTAGTCTCGAGGA 57.059 36.000 25.34 9.33 39.39 3.71
3120 3484 5.253330 GGATTGGACATGGACTTCAACTTA 58.747 41.667 0.00 0.00 0.00 2.24
3137 3501 0.336048 ATGGTGTGGAAGGGGATTGG 59.664 55.000 0.00 0.00 0.00 3.16
3191 3556 5.713807 AGTCGAAATACTATCCTAAGGGGT 58.286 41.667 0.00 0.00 36.25 4.95
3212 3577 1.616865 TGTGTGCTCGCCTACTTAAGT 59.383 47.619 13.68 13.68 0.00 2.24
3242 3607 0.035439 ATGGCGGTTACTGGACAAGG 60.035 55.000 0.00 0.00 0.00 3.61
3312 3677 1.154197 CGAAACGAAAGGGAGGGTTC 58.846 55.000 0.00 0.00 0.00 3.62
3325 3711 2.159142 ACAAGCCTATCCTACCGAAACG 60.159 50.000 0.00 0.00 0.00 3.60
3357 3743 8.428063 TGAAAATGAAAGAGGAAAAATGGCTTA 58.572 29.630 0.00 0.00 0.00 3.09
3370 3757 4.021981 GGTGGGGAGTTGAAAATGAAAGAG 60.022 45.833 0.00 0.00 0.00 2.85
3375 3762 3.320610 TTGGTGGGGAGTTGAAAATGA 57.679 42.857 0.00 0.00 0.00 2.57
3377 3764 6.022315 TCAATATTGGTGGGGAGTTGAAAAT 58.978 36.000 15.36 0.00 0.00 1.82
3452 3840 2.910319 GGCCATACCCACCTATGTGATA 59.090 50.000 0.00 0.00 45.76 2.15
3528 3916 2.289547 GCAAAACGCTTGTAGACTGGAA 59.710 45.455 0.40 0.00 37.77 3.53
3543 3931 2.230660 ACAGTCCAGGCTTAGCAAAAC 58.769 47.619 6.53 0.00 0.00 2.43
3583 3971 3.629398 CCAAGTAGATGGCAGAATGAACC 59.371 47.826 0.00 0.00 39.69 3.62
3586 3974 3.114606 TCCCAAGTAGATGGCAGAATGA 58.885 45.455 0.00 0.00 39.26 2.57
3622 4010 6.887002 AGGTGAAGAGAATTTTGGAGATTACC 59.113 38.462 0.00 0.00 0.00 2.85
3637 4025 2.634453 TGTGATGCAAGAGGTGAAGAGA 59.366 45.455 0.00 0.00 0.00 3.10
3655 4043 4.847633 ACGTGTTGTCAAGATTTCATGTG 58.152 39.130 0.00 0.00 0.00 3.21
3670 4058 3.276857 TCTCCCTAGCTAGTACGTGTTG 58.723 50.000 19.31 1.49 0.00 3.33
3671 4059 3.641434 TCTCCCTAGCTAGTACGTGTT 57.359 47.619 19.31 0.00 0.00 3.32
3722 4110 5.833131 TCTTGGCCTGTTCTTTATTTTGACT 59.167 36.000 3.32 0.00 0.00 3.41
3769 4181 8.830915 ATCAGGTTCTATCTCTACTTCTCAAA 57.169 34.615 0.00 0.00 0.00 2.69
3860 4275 0.669625 GGTACAGAGTGCCCGTGTTC 60.670 60.000 0.00 0.00 32.14 3.18
3876 4291 1.078988 GTCCATTTGGGTCGCGGTA 60.079 57.895 6.13 0.00 38.11 4.02
4201 4623 0.618458 TGTACACCATGCCTTCCCTC 59.382 55.000 0.00 0.00 0.00 4.30
4240 4662 1.254284 CCTTCCTGAGACGCCAGAGT 61.254 60.000 0.00 0.00 36.29 3.24
4302 4736 7.012515 TCGAGTTCTGAAGATCTAGTAATGTCC 59.987 40.741 0.00 0.00 0.00 4.02
4303 4737 7.921787 TCGAGTTCTGAAGATCTAGTAATGTC 58.078 38.462 0.00 0.00 0.00 3.06
4311 4745 6.679327 TCGATTTCGAGTTCTGAAGATCTA 57.321 37.500 0.00 0.00 44.22 1.98
4362 4797 1.063942 TCCTTCTCCAGCCTGACGATA 60.064 52.381 0.00 0.00 0.00 2.92
4757 5277 0.173481 TGGCGATCGAGGTTCAGAAG 59.827 55.000 21.57 0.00 0.00 2.85
4779 5327 6.821160 TCAACTCAACAGATGTACTCACAAAA 59.179 34.615 0.00 0.00 38.42 2.44
4780 5328 6.345298 TCAACTCAACAGATGTACTCACAAA 58.655 36.000 0.00 0.00 38.42 2.83
4805 5353 1.344114 TGCCAGCCAATCAAAAGGAAC 59.656 47.619 0.00 0.00 0.00 3.62
4808 5356 0.390735 GCTGCCAGCCAATCAAAAGG 60.391 55.000 5.06 0.00 34.48 3.11
4814 5362 2.751436 TTCCGCTGCCAGCCAATC 60.751 61.111 11.83 0.00 38.18 2.67
4820 5368 2.262471 GAATGCTGTTCCGCTGCCAG 62.262 60.000 0.00 0.00 40.74 4.85
4823 5371 2.099062 CGAATGCTGTTCCGCTGC 59.901 61.111 0.00 0.00 41.65 5.25
4827 5375 4.851114 CGCGCGAATGCTGTTCCG 62.851 66.667 28.94 0.00 39.65 4.30
5035 5583 3.174265 CCTCCCTGGAGATGCCCC 61.174 72.222 14.86 0.00 44.53 5.80
5309 5857 3.429141 CTGAGCGTGGCCTGCTTG 61.429 66.667 21.54 14.54 44.18 4.01
5427 6001 1.948834 CTTGCCACATCTGACACACAA 59.051 47.619 0.00 0.00 0.00 3.33
5449 6023 8.509690 CAAATCACATTACTGACTCACAATCTT 58.490 33.333 0.00 0.00 0.00 2.40
5450 6024 7.663081 ACAAATCACATTACTGACTCACAATCT 59.337 33.333 0.00 0.00 0.00 2.40
5451 6025 7.810658 ACAAATCACATTACTGACTCACAATC 58.189 34.615 0.00 0.00 0.00 2.67
5452 6026 7.750229 ACAAATCACATTACTGACTCACAAT 57.250 32.000 0.00 0.00 0.00 2.71
5473 6047 4.223923 ACCACCATTTCTTTCAACCAACAA 59.776 37.500 0.00 0.00 0.00 2.83
5477 6051 3.772025 ACAACCACCATTTCTTTCAACCA 59.228 39.130 0.00 0.00 0.00 3.67
5485 6059 2.101249 CTGCAACACAACCACCATTTCT 59.899 45.455 0.00 0.00 0.00 2.52
5491 6065 0.318955 GATGCTGCAACACAACCACC 60.319 55.000 6.36 0.00 0.00 4.61
5718 6301 9.308000 ACTGTAAAAATGAGGGAAAATGTGATA 57.692 29.630 0.00 0.00 0.00 2.15
5719 6302 8.090214 CACTGTAAAAATGAGGGAAAATGTGAT 58.910 33.333 0.00 0.00 0.00 3.06
5764 6347 0.174845 CCAAGAACAGGGCATGCATG 59.825 55.000 22.70 22.70 0.00 4.06
5792 6380 2.477845 GCGATGTGCTGTGAGTGC 59.522 61.111 0.00 0.00 41.73 4.40
5907 6497 4.868171 TGGTCGCACTGAAATGTATTCTAC 59.132 41.667 0.00 0.00 0.00 2.59
5910 6500 4.154195 ACTTGGTCGCACTGAAATGTATTC 59.846 41.667 0.00 0.00 0.00 1.75
5912 6502 3.674997 ACTTGGTCGCACTGAAATGTAT 58.325 40.909 0.00 0.00 0.00 2.29
5914 6504 1.967319 ACTTGGTCGCACTGAAATGT 58.033 45.000 0.00 0.00 0.00 2.71
5915 6505 3.044986 CAAACTTGGTCGCACTGAAATG 58.955 45.455 0.00 0.00 0.00 2.32
5916 6506 2.543653 GCAAACTTGGTCGCACTGAAAT 60.544 45.455 0.00 0.00 0.00 2.17
5928 6518 3.369756 TCGCGAATAGTTAGCAAACTTGG 59.630 43.478 6.20 0.00 43.60 3.61
6020 6614 3.495453 GGTACAGGTTGCTGAACACCTTA 60.495 47.826 0.00 0.00 33.27 2.69
6212 6806 3.607370 GAGGAACCTGGCCACGTCC 62.607 68.421 0.00 9.08 0.00 4.79
6260 6854 1.406219 CGTCGTCATCGTCAAGGCTG 61.406 60.000 0.00 0.00 38.33 4.85
6261 6855 1.154016 CGTCGTCATCGTCAAGGCT 60.154 57.895 0.00 0.00 38.33 4.58
6262 6856 2.158959 CCGTCGTCATCGTCAAGGC 61.159 63.158 0.00 0.00 38.33 4.35
6266 6860 2.483745 GAGCCGTCGTCATCGTCA 59.516 61.111 0.00 0.00 38.33 4.35
6267 6861 2.278013 GGAGCCGTCGTCATCGTC 60.278 66.667 0.00 0.00 38.33 4.20
6268 6862 4.175489 CGGAGCCGTCGTCATCGT 62.175 66.667 0.00 0.00 38.33 3.73
6437 7034 0.247736 GTCTCGTGCTGACTGGGATT 59.752 55.000 0.00 0.00 0.00 3.01
6438 7035 1.608717 GGTCTCGTGCTGACTGGGAT 61.609 60.000 0.00 0.00 35.04 3.85
6439 7036 2.276116 GGTCTCGTGCTGACTGGGA 61.276 63.158 0.00 0.00 35.04 4.37
6440 7037 2.262915 GGTCTCGTGCTGACTGGG 59.737 66.667 0.00 0.00 35.04 4.45
6441 7038 2.126307 CGGTCTCGTGCTGACTGG 60.126 66.667 0.00 0.00 37.22 4.00
6442 7039 2.126307 CCGGTCTCGTGCTGACTG 60.126 66.667 0.00 0.00 39.72 3.51
6443 7040 2.282251 TCCGGTCTCGTGCTGACT 60.282 61.111 0.00 0.00 35.04 3.41
6444 7041 2.126424 GTCCGGTCTCGTGCTGAC 60.126 66.667 0.00 0.00 33.95 3.51
6445 7042 2.596338 TGTCCGGTCTCGTGCTGA 60.596 61.111 0.00 0.00 33.95 4.26
6528 7131 0.543277 AGATTGATGAGCTTGCCGGA 59.457 50.000 5.05 0.00 0.00 5.14
6615 7224 1.968017 CCAGTTGATGGTGCGCTGT 60.968 57.895 9.73 0.00 44.91 4.40
6685 7294 2.809119 ACACACACACAGACGTTTGAAA 59.191 40.909 13.73 0.00 0.00 2.69
6686 7295 2.418692 ACACACACACAGACGTTTGAA 58.581 42.857 13.73 0.00 0.00 2.69
6701 7311 5.504830 GCTTCTCTCCTGAAAGAAAACACAC 60.505 44.000 0.00 0.00 34.07 3.82
6704 7314 4.818546 CAGCTTCTCTCCTGAAAGAAAACA 59.181 41.667 0.00 0.00 34.07 2.83
6705 7315 5.059833 TCAGCTTCTCTCCTGAAAGAAAAC 58.940 41.667 0.00 0.00 35.32 2.43
6748 7358 0.108615 CTTCGCCGTTCAGGATCAGT 60.109 55.000 0.00 0.00 45.00 3.41
6820 7430 0.969149 TCATGTGCTCTTCGGTGACT 59.031 50.000 0.00 0.00 0.00 3.41
6918 7533 9.043079 CAGCTAGCACATATCAGAATTATATGG 57.957 37.037 18.83 3.01 40.24 2.74
7011 7632 1.133253 CAAATCACTCGCGTGGCAG 59.867 57.895 13.32 1.70 41.53 4.85
7046 7668 2.613595 TGCAATCGACTATTGTCCATGC 59.386 45.455 14.93 14.93 45.78 4.06
7174 7796 5.960202 AAGCCAACTTAAGGATGATTTCCAT 59.040 36.000 7.53 0.00 39.86 3.41
7183 7805 2.618045 CGGGTGAAGCCAACTTAAGGAT 60.618 50.000 7.53 0.00 39.65 3.24
7184 7806 1.271163 CGGGTGAAGCCAACTTAAGGA 60.271 52.381 7.53 0.00 39.65 3.36
7203 7825 3.410850 CGACTCATGATCAAAACAAGCG 58.589 45.455 0.00 0.00 0.00 4.68
7272 7894 4.186926 TGCTTAAGCTCTAATGCTCAGTG 58.813 43.478 26.90 0.00 43.24 3.66
7274 7896 6.037940 TGAAATGCTTAAGCTCTAATGCTCAG 59.962 38.462 26.90 0.00 43.24 3.35
7300 7937 4.105377 ACATGCATCCTAAAGGGCTCTAAT 59.895 41.667 0.00 0.00 35.41 1.73
7301 7938 3.459598 ACATGCATCCTAAAGGGCTCTAA 59.540 43.478 0.00 0.00 35.41 2.10
7302 7939 3.048600 ACATGCATCCTAAAGGGCTCTA 58.951 45.455 0.00 0.00 35.41 2.43
7305 7942 2.834638 AACATGCATCCTAAAGGGCT 57.165 45.000 0.00 0.00 35.41 5.19
7310 7947 8.347004 TCAGTGAATTTAACATGCATCCTAAA 57.653 30.769 0.00 4.21 0.00 1.85
7318 7955 6.088824 CAGTTCCTCAGTGAATTTAACATGC 58.911 40.000 0.00 0.00 0.00 4.06
7319 7956 7.080099 CACAGTTCCTCAGTGAATTTAACATG 58.920 38.462 0.00 0.00 35.94 3.21
7320 7957 6.207417 CCACAGTTCCTCAGTGAATTTAACAT 59.793 38.462 0.00 0.00 35.94 2.71
7321 7958 5.530915 CCACAGTTCCTCAGTGAATTTAACA 59.469 40.000 0.00 0.00 35.94 2.41
7322 7959 5.763204 TCCACAGTTCCTCAGTGAATTTAAC 59.237 40.000 0.00 0.00 35.94 2.01
7323 7960 5.935945 TCCACAGTTCCTCAGTGAATTTAA 58.064 37.500 0.00 0.00 35.94 1.52
7324 7961 5.560722 TCCACAGTTCCTCAGTGAATTTA 57.439 39.130 0.00 0.00 35.94 1.40
7340 7977 1.493772 TCAACGCGTAAGTTCCACAG 58.506 50.000 14.46 0.00 41.68 3.66
7353 7990 0.040425 AACGCTGGAATGTTCAACGC 60.040 50.000 0.00 0.00 0.00 4.84
7354 7991 2.307049 GAAACGCTGGAATGTTCAACG 58.693 47.619 0.00 0.00 0.00 4.10
7409 8059 4.056452 CAAATCATTTGCCTTGTTTCGC 57.944 40.909 0.00 0.00 33.36 4.70
7424 8074 7.374272 TCTTAATCAATGAAAACGGCAAATCA 58.626 30.769 0.00 0.00 0.00 2.57
7520 8170 0.107214 CCCTTGTCGGTGCCATACAT 60.107 55.000 0.00 0.00 0.00 2.29
7533 8183 1.530655 CTCGGTTTTGGGCCCTTGT 60.531 57.895 25.70 0.00 0.00 3.16
7546 8196 1.415200 GATAAAGGAGGAGGCTCGGT 58.585 55.000 8.69 0.00 0.00 4.69
7590 8240 1.405121 GGTCTTTCATAACTCCGCCGT 60.405 52.381 0.00 0.00 0.00 5.68
7643 8293 2.228822 CGCCTCCTTGTTTATGCTTGTT 59.771 45.455 0.00 0.00 0.00 2.83
7706 8356 3.243839 TGAAGCTTTGGTTTGAGATTGGC 60.244 43.478 0.00 0.00 0.00 4.52
7725 8375 2.367241 TGTGAGGATCTGACGGTTTGAA 59.633 45.455 0.00 0.00 34.92 2.69
7746 8396 4.719773 TGGATTGGCCTACATACTAGTGTT 59.280 41.667 5.39 0.00 37.63 3.32
7750 8400 4.955811 TGTGGATTGGCCTACATACTAG 57.044 45.455 3.32 0.00 37.63 2.57
7754 8404 3.650461 TGCTATGTGGATTGGCCTACATA 59.350 43.478 3.32 10.12 38.49 2.29
7771 8421 1.207329 GGTCTGAACCGAGGTTGCTAT 59.793 52.381 12.80 0.00 38.60 2.97
7785 8435 2.283529 GGTTCTCCTGGCGGTCTGA 61.284 63.158 0.00 0.00 0.00 3.27
7805 8457 5.631026 GCGACACACATTCTATTTCAATGT 58.369 37.500 0.00 0.00 43.80 2.71
7847 8499 3.519510 ACTATAACCTTTGCCTGCTCTGA 59.480 43.478 0.00 0.00 0.00 3.27
7848 8500 3.878778 ACTATAACCTTTGCCTGCTCTG 58.121 45.455 0.00 0.00 0.00 3.35
7850 8502 4.333926 CAGAACTATAACCTTTGCCTGCTC 59.666 45.833 0.00 0.00 0.00 4.26
7851 8503 4.265073 CAGAACTATAACCTTTGCCTGCT 58.735 43.478 0.00 0.00 0.00 4.24
7852 8504 3.378427 CCAGAACTATAACCTTTGCCTGC 59.622 47.826 0.00 0.00 0.00 4.85
7853 8505 3.378427 GCCAGAACTATAACCTTTGCCTG 59.622 47.826 0.00 0.00 0.00 4.85
7854 8506 3.010138 TGCCAGAACTATAACCTTTGCCT 59.990 43.478 0.00 0.00 0.00 4.75
7855 8507 3.128764 GTGCCAGAACTATAACCTTTGCC 59.871 47.826 0.00 0.00 0.00 4.52
7856 8508 3.128764 GGTGCCAGAACTATAACCTTTGC 59.871 47.826 0.00 0.00 0.00 3.68
7865 8517 1.656587 TCTGTGGGTGCCAGAACTAT 58.343 50.000 0.00 0.00 36.07 2.12
7866 8518 1.429930 TTCTGTGGGTGCCAGAACTA 58.570 50.000 0.00 0.00 42.43 2.24
7897 8549 3.053831 TCCCGTTCTTCTGGAAATGAC 57.946 47.619 0.00 0.00 35.51 3.06
7948 8600 8.560124 ACCTGATTTTCCTCTATCAAGATACT 57.440 34.615 0.00 0.00 30.90 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.