Multiple sequence alignment - TraesCS1A01G267800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G267800 chr1A 100.000 4575 0 0 1 4575 462779668 462775094 0.000000e+00 8449.0
1 TraesCS1A01G267800 chr1A 100.000 59 0 0 4761 4819 462774908 462774850 5.100000e-20 110.0
2 TraesCS1A01G267800 chr1A 100.000 28 0 0 2236 2263 462777406 462777433 9.000000e-03 52.8
3 TraesCS1A01G267800 chr1A 100.000 28 0 0 2247 2274 489266958 489266985 9.000000e-03 52.8
4 TraesCS1A01G267800 chr1D 88.354 1975 118 50 307 2219 363622551 363620627 0.000000e+00 2270.0
5 TraesCS1A01G267800 chr1D 86.515 1446 80 52 2420 3796 363620410 363619011 0.000000e+00 1483.0
6 TraesCS1A01G267800 chr1D 85.580 742 46 22 3794 4503 363618976 363618264 0.000000e+00 721.0
7 TraesCS1A01G267800 chr1D 91.850 319 17 4 1 312 363624798 363624482 2.060000e-118 436.0
8 TraesCS1A01G267800 chr1D 88.270 341 22 7 378 711 363624483 363624154 4.520000e-105 392.0
9 TraesCS1A01G267800 chr1D 86.239 109 7 6 2299 2403 363620600 363620496 1.420000e-20 111.0
10 TraesCS1A01G267800 chr1D 100.000 28 0 0 2247 2274 47497158 47497185 9.000000e-03 52.8
11 TraesCS1A01G267800 chr1B 91.107 1608 92 21 634 2219 486849493 486847915 0.000000e+00 2130.0
12 TraesCS1A01G267800 chr1B 86.254 1455 86 44 2420 3790 486847704 486846280 0.000000e+00 1474.0
13 TraesCS1A01G267800 chr1B 87.919 596 41 7 1 573 486852165 486851578 0.000000e+00 673.0
14 TraesCS1A01G267800 chr1B 88.859 377 23 8 4131 4503 486845989 486845628 3.420000e-121 446.0
15 TraesCS1A01G267800 chr1B 92.523 107 7 1 3379 3485 635834951 635835056 8.350000e-33 152.0
16 TraesCS1A01G267800 chr1B 91.549 71 3 2 4506 4575 486845591 486845523 1.430000e-15 95.3
17 TraesCS1A01G267800 chr3D 83.279 305 39 10 1202 1506 496070935 496071227 2.210000e-68 270.0
18 TraesCS1A01G267800 chr3D 90.909 154 14 0 3332 3485 496073326 496073479 1.760000e-49 207.0
19 TraesCS1A01G267800 chr3D 100.000 28 0 0 2247 2274 322071365 322071392 9.000000e-03 52.8
20 TraesCS1A01G267800 chr3B 83.172 309 32 14 1202 1506 655027768 655028060 1.030000e-66 265.0
21 TraesCS1A01G267800 chr3B 89.610 154 16 0 3332 3485 655030150 655030303 3.800000e-46 196.0
22 TraesCS1A01G267800 chr3B 96.875 32 1 0 2202 2233 84898802 84898771 2.000000e-03 54.7
23 TraesCS1A01G267800 chr3B 100.000 29 0 0 2246 2274 762953987 762954015 2.000000e-03 54.7
24 TraesCS1A01G267800 chr3A 89.151 212 20 3 1295 1506 635325594 635325802 1.330000e-65 261.0
25 TraesCS1A01G267800 chr3A 90.260 154 15 0 3332 3485 635327861 635328014 8.180000e-48 202.0
26 TraesCS1A01G267800 chr4B 94.059 101 6 0 3385 3485 147476481 147476581 2.320000e-33 154.0
27 TraesCS1A01G267800 chr6B 93.069 101 7 0 3385 3485 606377055 606376955 1.080000e-31 148.0
28 TraesCS1A01G267800 chr4A 88.889 63 4 2 2214 2274 590269335 590269274 1.860000e-09 75.0
29 TraesCS1A01G267800 chr6A 97.436 39 1 0 2236 2274 31357115 31357077 3.110000e-07 67.6
30 TraesCS1A01G267800 chr6A 97.436 39 1 0 2236 2274 31357088 31357126 3.110000e-07 67.6
31 TraesCS1A01G267800 chr6D 100.000 28 0 0 2247 2274 287025966 287025993 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G267800 chr1A 462774850 462779668 4818 True 4279.500000 8449 100.000000 1 4819 2 chr1A.!!$R1 4818
1 TraesCS1A01G267800 chr1D 363618264 363624798 6534 True 902.166667 2270 87.801333 1 4503 6 chr1D.!!$R1 4502
2 TraesCS1A01G267800 chr1B 486845523 486852165 6642 True 963.660000 2130 89.137600 1 4575 5 chr1B.!!$R1 4574
3 TraesCS1A01G267800 chr3D 496070935 496073479 2544 False 238.500000 270 87.094000 1202 3485 2 chr3D.!!$F2 2283
4 TraesCS1A01G267800 chr3B 655027768 655030303 2535 False 230.500000 265 86.391000 1202 3485 2 chr3B.!!$F2 2283
5 TraesCS1A01G267800 chr3A 635325594 635328014 2420 False 231.500000 261 89.705500 1295 3485 2 chr3A.!!$F1 2190

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
880 4895 0.109319 CTGGCCGGTAATTTGTGTGC 60.109 55.0 2.29 0.00 0.00 4.57 F
2236 6606 0.034337 CTCCCTCCGTTCGGAAACAA 59.966 55.0 14.79 1.25 34.93 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2599 7101 0.026803 GTAGCGGTGGTACGTACGAG 59.973 60.0 24.41 10.95 35.98 4.18 R
3986 9128 0.107508 AGATCGACCCATTGGCTGTG 60.108 55.0 0.00 0.00 33.59 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 133 0.867753 CCGAGAATCTTCAGCGTCCG 60.868 60.000 0.00 0.00 0.00 4.79
157 163 3.003478 GCGCTACGATCCAAACCG 58.997 61.111 0.00 0.00 0.00 4.44
175 181 5.723672 AACCGTGATATATACAGGTGAGG 57.276 43.478 6.32 0.00 31.63 3.86
176 182 4.737578 ACCGTGATATATACAGGTGAGGT 58.262 43.478 5.09 0.00 0.00 3.85
178 184 4.486090 CGTGATATATACAGGTGAGGTGC 58.514 47.826 0.00 0.00 0.00 5.01
179 185 4.618460 CGTGATATATACAGGTGAGGTGCC 60.618 50.000 0.00 0.00 0.00 5.01
180 186 3.838317 TGATATATACAGGTGAGGTGCCC 59.162 47.826 0.00 0.00 0.00 5.36
273 281 4.578928 GGTTATGGCCAGTGGTTATTACAG 59.421 45.833 13.05 0.00 0.00 2.74
277 285 2.654863 GCCAGTGGTTATTACAGCCAT 58.345 47.619 11.74 0.00 40.03 4.40
295 303 2.880890 CCATAGATGGTAAAGCTGTGCC 59.119 50.000 3.61 3.61 43.05 5.01
369 2310 0.603975 AGCGTGCTTCTCTCCAAACC 60.604 55.000 0.00 0.00 0.00 3.27
390 2331 1.412343 TGCAAAAGCAAAAGTCCTCCC 59.588 47.619 0.00 0.00 0.00 4.30
431 2395 4.103103 GCCGCGAAGTTCCAAGGC 62.103 66.667 8.23 13.02 37.61 4.35
448 2412 1.474077 AGGCGTTGATGGCTTTGAATC 59.526 47.619 0.00 0.00 42.97 2.52
534 2504 2.477375 GTCGGTGCTCACGTGAAAATTA 59.523 45.455 20.49 0.90 0.00 1.40
541 2512 6.755141 GGTGCTCACGTGAAAATTATAGAGTA 59.245 38.462 20.49 0.11 0.00 2.59
543 2514 7.701078 GTGCTCACGTGAAAATTATAGAGTAGA 59.299 37.037 20.49 0.00 0.00 2.59
549 2520 6.087028 CGTGAAAATTATAGAGTAGAGCGAGC 59.913 42.308 0.00 0.00 0.00 5.03
550 2521 6.918569 GTGAAAATTATAGAGTAGAGCGAGCA 59.081 38.462 0.00 0.00 0.00 4.26
557 2528 0.528470 AGTAGAGCGAGCAACTCCAC 59.472 55.000 0.00 0.00 34.56 4.02
580 2551 6.600822 CACAATCCAGATTCCAGACAGTATTT 59.399 38.462 0.00 0.00 0.00 1.40
583 2554 9.347240 CAATCCAGATTCCAGACAGTATTTATT 57.653 33.333 0.00 0.00 0.00 1.40
612 2583 5.778750 TGTTAGAAGGTACAGAAGCCTAACT 59.221 40.000 0.00 0.00 36.88 2.24
693 4688 1.284982 CTGAACAAGTGTCGCCCGAG 61.285 60.000 0.00 0.00 0.00 4.63
694 4689 2.027625 GAACAAGTGTCGCCCGAGG 61.028 63.158 0.00 0.00 0.00 4.63
695 4690 3.530910 AACAAGTGTCGCCCGAGGG 62.531 63.158 3.22 3.22 38.57 4.30
700 4695 3.691342 TGTCGCCCGAGGGAACAG 61.691 66.667 13.28 0.00 36.60 3.16
713 4708 1.379527 GGAACAGCCGAATTACCAGG 58.620 55.000 0.00 0.00 0.00 4.45
747 4742 1.411246 AGTACACCAGCAACGACAAGA 59.589 47.619 0.00 0.00 0.00 3.02
783 4784 4.566987 ACTACGTGGTGAAATCCTTCTTC 58.433 43.478 2.80 0.00 32.33 2.87
793 4794 4.020573 TGAAATCCTTCTTCGGACTTGCTA 60.021 41.667 0.00 0.00 35.52 3.49
794 4795 4.553330 AATCCTTCTTCGGACTTGCTAA 57.447 40.909 0.00 0.00 35.52 3.09
795 4796 4.762289 ATCCTTCTTCGGACTTGCTAAT 57.238 40.909 0.00 0.00 35.52 1.73
796 4797 3.861840 TCCTTCTTCGGACTTGCTAATG 58.138 45.455 0.00 0.00 0.00 1.90
797 4798 2.352960 CCTTCTTCGGACTTGCTAATGC 59.647 50.000 0.00 0.00 40.20 3.56
798 4799 3.265791 CTTCTTCGGACTTGCTAATGCT 58.734 45.455 0.00 0.00 40.48 3.79
799 4800 4.433615 CTTCTTCGGACTTGCTAATGCTA 58.566 43.478 0.00 0.00 40.48 3.49
800 4801 4.465632 TCTTCGGACTTGCTAATGCTAA 57.534 40.909 0.00 0.00 40.48 3.09
801 4802 5.023533 TCTTCGGACTTGCTAATGCTAAT 57.976 39.130 0.00 0.00 40.48 1.73
802 4803 4.811024 TCTTCGGACTTGCTAATGCTAATG 59.189 41.667 0.00 0.00 40.48 1.90
803 4804 2.872245 TCGGACTTGCTAATGCTAATGC 59.128 45.455 0.00 0.00 40.48 3.56
804 4805 2.031682 CGGACTTGCTAATGCTAATGCC 60.032 50.000 0.00 0.00 40.48 4.40
838 4845 2.062177 GCCTACCAACGGCTAGGGA 61.062 63.158 0.00 0.00 44.17 4.20
839 4846 2.029307 GCCTACCAACGGCTAGGGAG 62.029 65.000 0.00 0.00 44.17 4.30
840 4847 2.125178 CTACCAACGGCTAGGGAGG 58.875 63.158 0.00 0.00 31.84 4.30
841 4848 1.382146 TACCAACGGCTAGGGAGGG 60.382 63.158 0.00 0.00 0.00 4.30
842 4849 4.176752 CCAACGGCTAGGGAGGGC 62.177 72.222 0.00 0.00 0.00 5.19
858 4872 2.422479 GAGGGCCGAAAAGTTACCAATC 59.578 50.000 0.00 0.00 0.00 2.67
861 4875 3.119602 GGGCCGAAAAGTTACCAATCTTC 60.120 47.826 0.00 0.00 0.00 2.87
866 4881 4.379499 CGAAAAGTTACCAATCTTCTGGCC 60.379 45.833 0.00 0.00 40.45 5.36
879 4894 1.529226 TCTGGCCGGTAATTTGTGTG 58.471 50.000 12.43 0.00 0.00 3.82
880 4895 0.109319 CTGGCCGGTAATTTGTGTGC 60.109 55.000 2.29 0.00 0.00 4.57
881 4896 1.154112 GGCCGGTAATTTGTGTGCG 60.154 57.895 1.90 0.00 0.00 5.34
882 4897 1.577421 GCCGGTAATTTGTGTGCGT 59.423 52.632 1.90 0.00 0.00 5.24
975 4993 2.045731 CCCCGGCCGCTTTAAAGA 60.046 61.111 22.85 0.00 0.00 2.52
978 4996 1.136774 CCGGCCGCTTTAAAGAAGC 59.863 57.895 22.85 18.14 39.77 3.86
979 4997 1.582610 CCGGCCGCTTTAAAGAAGCA 61.583 55.000 22.85 0.00 43.15 3.91
980 4998 0.239879 CGGCCGCTTTAAAGAAGCAA 59.760 50.000 14.67 0.00 43.15 3.91
997 5015 3.292277 AGCAAGAAACAAACGTTGCACG 61.292 45.455 0.00 7.07 46.28 5.34
1068 5099 4.677151 AAGGCGGGGAAGGGAGGT 62.677 66.667 0.00 0.00 0.00 3.85
1071 5102 3.787001 GCGGGGAAGGGAGGTGAG 61.787 72.222 0.00 0.00 0.00 3.51
1535 5588 2.915659 TCTGTCGTCCCGCAACCT 60.916 61.111 0.00 0.00 0.00 3.50
1536 5589 2.030562 CTGTCGTCCCGCAACCTT 59.969 61.111 0.00 0.00 0.00 3.50
1537 5590 1.597027 CTGTCGTCCCGCAACCTTT 60.597 57.895 0.00 0.00 0.00 3.11
1552 5605 3.345508 ACCTTTACCCGTTCTTCATCC 57.654 47.619 0.00 0.00 0.00 3.51
1585 5918 3.006537 TGAACTGGTCACTTGGTAGTAGC 59.993 47.826 0.00 0.00 31.96 3.58
1597 5930 2.821378 TGGTAGTAGCACTTCGCAGTAA 59.179 45.455 0.00 0.00 46.13 2.24
1611 5944 6.258068 ACTTCGCAGTAAATTAACTAGGATGC 59.742 38.462 0.00 0.00 0.00 3.91
1654 5987 5.028549 ACGATGGCATCTCATTACTCTTT 57.971 39.130 23.97 0.00 0.00 2.52
1677 6010 1.302431 CATCAGGTGGCACCGACAA 60.302 57.895 29.76 16.98 44.90 3.18
1712 6048 9.090692 TGTTGTAGACTAGTTTGTTTTACAGTC 57.909 33.333 0.00 0.00 0.00 3.51
1722 6058 7.370383 AGTTTGTTTTACAGTCTGCATTATGG 58.630 34.615 0.00 0.00 0.00 2.74
1774 6113 2.030628 CACCGGATGTGGTACCAAAAAC 60.031 50.000 18.31 10.01 41.38 2.43
1879 6219 0.796312 AAGCATAAACGGACACTGCG 59.204 50.000 0.00 0.00 37.88 5.18
1882 6222 0.796312 CATAAACGGACACTGCGCTT 59.204 50.000 9.73 0.00 33.30 4.68
1897 6237 1.800586 GCGCTTCACTGACATTTCTCA 59.199 47.619 0.00 0.00 0.00 3.27
2137 6506 0.331616 AATCGAGGTTGGAAAGGGGG 59.668 55.000 0.00 0.00 0.00 5.40
2172 6541 2.739784 CCGCCTAGATGCCCAGAG 59.260 66.667 0.00 0.00 0.00 3.35
2181 6551 2.336891 AGATGCCCAGAGTCATATGCT 58.663 47.619 0.00 0.00 0.00 3.79
2184 6554 2.052468 TGCCCAGAGTCATATGCTCAT 58.948 47.619 21.46 9.78 35.55 2.90
2202 6572 8.644318 ATGCTCATAAATCTCTCAAAATTTGC 57.356 30.769 0.00 0.00 0.00 3.68
2219 6589 3.594603 TTGCAGCCTAGTCTTGTACTC 57.405 47.619 0.00 0.00 39.80 2.59
2220 6590 1.825474 TGCAGCCTAGTCTTGTACTCC 59.175 52.381 0.00 0.00 39.80 3.85
2222 6592 2.741145 CAGCCTAGTCTTGTACTCCCT 58.259 52.381 0.00 0.00 39.80 4.20
2224 6594 2.033372 GCCTAGTCTTGTACTCCCTCC 58.967 57.143 0.00 0.00 39.80 4.30
2226 6596 2.356947 CCTAGTCTTGTACTCCCTCCGT 60.357 54.545 0.00 0.00 39.80 4.69
2229 6599 1.135460 GTCTTGTACTCCCTCCGTTCG 60.135 57.143 0.00 0.00 0.00 3.95
2231 6601 0.251297 TTGTACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
2232 6602 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
2233 6603 0.890683 GTACTCCCTCCGTTCGGAAA 59.109 55.000 14.79 3.49 33.41 3.13
2234 6604 0.890683 TACTCCCTCCGTTCGGAAAC 59.109 55.000 14.79 0.00 33.41 2.78
2236 6606 0.034337 CTCCCTCCGTTCGGAAACAA 59.966 55.000 14.79 1.25 34.93 2.83
2237 6607 0.469070 TCCCTCCGTTCGGAAACAAA 59.531 50.000 14.79 0.00 34.93 2.83
2240 6610 1.199097 CCTCCGTTCGGAAACAAATGG 59.801 52.381 14.79 7.14 34.93 3.16
2242 6612 2.292292 CTCCGTTCGGAAACAAATGGTT 59.708 45.455 14.79 0.00 42.98 3.67
2243 6613 2.033550 TCCGTTCGGAAACAAATGGTTG 59.966 45.455 11.66 0.00 40.35 3.77
2273 6643 9.877178 CTAGATACAACCATTTCTAAGACAAGT 57.123 33.333 0.00 0.00 0.00 3.16
2274 6644 8.553459 AGATACAACCATTTCTAAGACAAGTG 57.447 34.615 0.00 0.00 0.00 3.16
2275 6645 8.157476 AGATACAACCATTTCTAAGACAAGTGT 58.843 33.333 0.00 0.00 0.00 3.55
2276 6646 6.377327 ACAACCATTTCTAAGACAAGTGTG 57.623 37.500 0.00 0.00 0.00 3.82
2278 6648 4.398319 ACCATTTCTAAGACAAGTGTGGG 58.602 43.478 0.00 0.00 0.00 4.61
2279 6649 4.104102 ACCATTTCTAAGACAAGTGTGGGA 59.896 41.667 0.00 0.00 0.00 4.37
2280 6650 4.697352 CCATTTCTAAGACAAGTGTGGGAG 59.303 45.833 0.00 0.00 0.00 4.30
2281 6651 5.308825 CATTTCTAAGACAAGTGTGGGAGT 58.691 41.667 0.00 0.00 0.00 3.85
2283 6653 5.464030 TTCTAAGACAAGTGTGGGAGTAC 57.536 43.478 0.00 0.00 0.00 2.73
2289 6659 3.573110 GACAAGTGTGGGAGTACAGTAGT 59.427 47.826 0.00 0.00 33.25 2.73
2293 6663 4.995536 AGTGTGGGAGTACAGTAGTAACT 58.004 43.478 0.00 0.00 32.65 2.24
2504 6997 4.415150 ATGCTGGCCACCGTCCTG 62.415 66.667 0.00 0.00 0.00 3.86
2592 7094 2.718062 TGGTAAGCATCCATCCATCCAT 59.282 45.455 0.00 0.00 0.00 3.41
2595 7097 0.608308 AGCATCCATCCATCCATGCG 60.608 55.000 0.00 0.00 45.26 4.73
2596 7098 1.880894 CATCCATCCATCCATGCGC 59.119 57.895 0.00 0.00 0.00 6.09
2597 7099 1.303888 ATCCATCCATCCATGCGCC 60.304 57.895 4.18 0.00 0.00 6.53
2598 7100 1.786407 ATCCATCCATCCATGCGCCT 61.786 55.000 4.18 0.00 0.00 5.52
2599 7101 1.970114 CCATCCATCCATGCGCCTC 60.970 63.158 4.18 0.00 0.00 4.70
2600 7102 1.072678 CATCCATCCATGCGCCTCT 59.927 57.895 4.18 0.00 0.00 3.69
2601 7103 0.954449 CATCCATCCATGCGCCTCTC 60.954 60.000 4.18 0.00 0.00 3.20
2602 7104 2.446142 ATCCATCCATGCGCCTCTCG 62.446 60.000 4.18 0.00 42.12 4.04
2603 7105 2.107750 CATCCATGCGCCTCTCGT 59.892 61.111 4.18 0.00 41.07 4.18
2604 7106 1.363807 CATCCATGCGCCTCTCGTA 59.636 57.895 4.18 0.00 41.07 3.43
2666 7201 2.618053 CTGTATCCCTTTGTCACGGAC 58.382 52.381 0.00 0.00 0.00 4.79
2667 7202 1.067425 TGTATCCCTTTGTCACGGACG 60.067 52.381 0.00 0.00 34.95 4.79
2668 7203 0.533491 TATCCCTTTGTCACGGACGG 59.467 55.000 0.00 0.00 34.95 4.79
2669 7204 1.189524 ATCCCTTTGTCACGGACGGA 61.190 55.000 0.00 0.00 34.95 4.69
2670 7205 1.070105 CCCTTTGTCACGGACGGAA 59.930 57.895 0.00 0.00 34.95 4.30
2671 7206 0.321298 CCCTTTGTCACGGACGGAAT 60.321 55.000 0.00 0.00 34.95 3.01
2673 7208 0.713883 CTTTGTCACGGACGGAATCG 59.286 55.000 0.00 0.00 43.02 3.34
2689 7224 6.309712 CGGAATCGTCCTGTATAGAAAGTA 57.690 41.667 0.00 0.00 42.44 2.24
2690 7225 6.910995 CGGAATCGTCCTGTATAGAAAGTAT 58.089 40.000 0.00 0.00 42.44 2.12
2696 7231 9.694137 ATCGTCCTGTATAGAAAGTATAAAAGC 57.306 33.333 0.00 0.00 0.00 3.51
2748 7291 0.456653 CACGCTGTAAAGCCCATTGC 60.457 55.000 0.00 0.00 41.71 3.56
2769 7320 4.427312 GCCCTTTGCAAACATAGATCTTG 58.573 43.478 8.05 1.85 40.77 3.02
2771 7322 4.142093 CCCTTTGCAAACATAGATCTTGGG 60.142 45.833 8.05 9.47 0.00 4.12
2772 7323 4.706476 CCTTTGCAAACATAGATCTTGGGA 59.294 41.667 8.05 0.00 0.00 4.37
2773 7324 5.163581 CCTTTGCAAACATAGATCTTGGGAG 60.164 44.000 8.05 0.00 0.00 4.30
2819 7370 1.423161 AGAGCTTTGAGGCTTTCACCT 59.577 47.619 0.00 0.00 43.20 4.00
2920 7521 8.107095 ACTTTTTGTCAGGGAATAAGCTGTATA 58.893 33.333 0.00 0.00 0.00 1.47
2979 7584 2.187163 GTAGAGCAGGAACGGGGC 59.813 66.667 0.00 0.00 0.00 5.80
3045 8040 1.322442 GCCAGCCATAAATCAGGGAC 58.678 55.000 0.00 0.00 0.00 4.46
3063 8058 1.377333 CGCCTTTCCCTGTCCTTCC 60.377 63.158 0.00 0.00 0.00 3.46
3196 8209 2.577700 TGTAGTCATGTGGCGGTTTTT 58.422 42.857 0.00 0.00 0.00 1.94
3211 8224 2.957680 GGTTTTTAACCCCCACGAAGAA 59.042 45.455 0.00 0.00 46.12 2.52
3236 8265 4.853924 AAGTTACCTTTTCACCATGCTG 57.146 40.909 0.00 0.00 0.00 4.41
3252 8285 1.814394 TGCTGATTCAACTGCCATGTC 59.186 47.619 0.00 0.00 34.63 3.06
3277 8310 3.868077 GCTGCTAGCATTATCCTAATCCG 59.132 47.826 19.72 2.45 41.89 4.18
3315 8377 4.356405 TCTCTTGTGTGATGATGTGGTT 57.644 40.909 0.00 0.00 0.00 3.67
3319 8381 2.228925 TGTGTGATGATGTGGTTGTGG 58.771 47.619 0.00 0.00 0.00 4.17
3320 8382 2.229792 GTGTGATGATGTGGTTGTGGT 58.770 47.619 0.00 0.00 0.00 4.16
3321 8383 2.226437 GTGTGATGATGTGGTTGTGGTC 59.774 50.000 0.00 0.00 0.00 4.02
3322 8384 1.464608 GTGATGATGTGGTTGTGGTCG 59.535 52.381 0.00 0.00 0.00 4.79
3323 8385 0.447801 GATGATGTGGTTGTGGTCGC 59.552 55.000 0.00 0.00 0.00 5.19
3324 8386 0.250684 ATGATGTGGTTGTGGTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
3489 8551 2.202676 CTCCTCGCTTGACGCTCC 60.203 66.667 0.00 0.00 43.23 4.70
3497 8559 1.347817 GCTTGACGCTCCTTCACTCG 61.348 60.000 0.00 0.00 35.14 4.18
3550 8612 3.502595 CCGATCGAGAGGCTAATAAGTGA 59.497 47.826 18.66 0.00 0.00 3.41
3582 8644 1.273098 ACAATGACCCTCCGGTACTCT 60.273 52.381 0.00 0.00 44.88 3.24
3583 8645 1.409427 CAATGACCCTCCGGTACTCTC 59.591 57.143 0.00 0.00 44.88 3.20
3584 8646 0.927767 ATGACCCTCCGGTACTCTCT 59.072 55.000 0.00 0.00 44.88 3.10
3585 8647 0.255318 TGACCCTCCGGTACTCTCTC 59.745 60.000 0.00 0.00 44.88 3.20
3598 8660 5.105877 CGGTACTCTCTCCTTGTATGTTTGA 60.106 44.000 0.00 0.00 0.00 2.69
3599 8661 6.571731 CGGTACTCTCTCCTTGTATGTTTGAA 60.572 42.308 0.00 0.00 0.00 2.69
3636 8704 3.225940 TCTCTCTCTTTCTCTGTGTGCA 58.774 45.455 0.00 0.00 0.00 4.57
3637 8705 3.831333 TCTCTCTCTTTCTCTGTGTGCAT 59.169 43.478 0.00 0.00 0.00 3.96
3638 8706 3.922910 TCTCTCTTTCTCTGTGTGCATG 58.077 45.455 0.00 0.00 0.00 4.06
3639 8707 2.415857 CTCTCTTTCTCTGTGTGCATGC 59.584 50.000 11.82 11.82 0.00 4.06
3640 8708 2.038164 TCTCTTTCTCTGTGTGCATGCT 59.962 45.455 20.33 0.00 0.00 3.79
3641 8709 2.812591 CTCTTTCTCTGTGTGCATGCTT 59.187 45.455 20.33 0.00 0.00 3.91
3642 8710 2.551032 TCTTTCTCTGTGTGCATGCTTG 59.449 45.455 20.33 4.57 0.00 4.01
3643 8711 1.971481 TTCTCTGTGTGCATGCTTGT 58.029 45.000 20.33 0.00 0.00 3.16
3644 8712 1.971481 TCTCTGTGTGCATGCTTGTT 58.029 45.000 20.33 0.00 0.00 2.83
3645 8713 1.605232 TCTCTGTGTGCATGCTTGTTG 59.395 47.619 20.33 6.73 0.00 3.33
3646 8714 1.335810 CTCTGTGTGCATGCTTGTTGT 59.664 47.619 20.33 0.00 0.00 3.32
3647 8715 1.065851 TCTGTGTGCATGCTTGTTGTG 59.934 47.619 20.33 3.52 0.00 3.33
3648 8716 0.528033 TGTGTGCATGCTTGTTGTGC 60.528 50.000 20.33 1.40 39.26 4.57
3672 8740 3.130164 TGTGTGTTGTCATTCCTTGGTTG 59.870 43.478 0.00 0.00 0.00 3.77
3717 8802 0.833287 AGCTGACCCGCTTCATGTAT 59.167 50.000 0.00 0.00 36.74 2.29
3729 8814 4.092529 CGCTTCATGTATCATATCTGTGCC 59.907 45.833 0.00 0.00 0.00 5.01
3754 8843 3.179599 GCGTGTATGTTTGTTTGTTGAGC 59.820 43.478 0.00 0.00 0.00 4.26
3762 8851 2.849880 TGTTTGTTGAGCTTGAGCAC 57.150 45.000 5.70 0.00 45.16 4.40
3781 8870 0.235665 CGACACACAGTGCATGAACC 59.764 55.000 0.00 0.00 36.98 3.62
3792 8917 4.209703 CAGTGCATGAACCACAATTTGAAC 59.790 41.667 0.00 0.00 35.69 3.18
3851 8991 0.179119 CTCGCCCGTCCGTTCTTAAT 60.179 55.000 0.00 0.00 0.00 1.40
3852 8992 1.066002 CTCGCCCGTCCGTTCTTAATA 59.934 52.381 0.00 0.00 0.00 0.98
3853 8993 1.476085 TCGCCCGTCCGTTCTTAATAA 59.524 47.619 0.00 0.00 0.00 1.40
3897 9037 3.264104 TCAAACTTTGTTCGACCTCGTT 58.736 40.909 1.44 0.00 40.80 3.85
3899 9039 1.861971 ACTTTGTTCGACCTCGTTCC 58.138 50.000 0.00 0.00 40.80 3.62
3901 9041 2.624838 ACTTTGTTCGACCTCGTTCCTA 59.375 45.455 0.00 0.00 40.80 2.94
3922 9062 1.610522 CAGCCAAACTGGAGGTTGAAG 59.389 52.381 5.98 0.00 40.96 3.02
3925 9065 1.873591 CCAAACTGGAGGTTGAAGACG 59.126 52.381 5.98 0.00 40.96 4.18
3938 9078 1.160137 GAAGACGCCTGCAAGAACAT 58.840 50.000 0.00 0.00 34.07 2.71
3939 9079 1.537202 GAAGACGCCTGCAAGAACATT 59.463 47.619 0.00 0.00 34.07 2.71
3973 9115 4.730966 AGACAGAACCTTCAGTAGAGACA 58.269 43.478 0.00 0.00 0.00 3.41
3983 9125 9.642343 AACCTTCAGTAGAGACATACATACATA 57.358 33.333 0.00 0.00 0.00 2.29
3984 9126 9.069082 ACCTTCAGTAGAGACATACATACATAC 57.931 37.037 0.00 0.00 0.00 2.39
3985 9127 9.067986 CCTTCAGTAGAGACATACATACATACA 57.932 37.037 0.00 0.00 0.00 2.29
3986 9128 9.885934 CTTCAGTAGAGACATACATACATACAC 57.114 37.037 0.00 0.00 0.00 2.90
3987 9129 8.974060 TCAGTAGAGACATACATACATACACA 57.026 34.615 0.00 0.00 0.00 3.72
3988 9130 8.837389 TCAGTAGAGACATACATACATACACAC 58.163 37.037 0.00 0.00 0.00 3.82
3989 9131 8.621286 CAGTAGAGACATACATACATACACACA 58.379 37.037 0.00 0.00 0.00 3.72
3990 9132 8.841300 AGTAGAGACATACATACATACACACAG 58.159 37.037 0.00 0.00 0.00 3.66
3991 9133 6.507900 AGAGACATACATACATACACACAGC 58.492 40.000 0.00 0.00 0.00 4.40
3992 9134 5.601662 AGACATACATACATACACACAGCC 58.398 41.667 0.00 0.00 0.00 4.85
3993 9135 5.128663 AGACATACATACATACACACAGCCA 59.871 40.000 0.00 0.00 0.00 4.75
3994 9136 5.739959 ACATACATACATACACACAGCCAA 58.260 37.500 0.00 0.00 0.00 4.52
3995 9137 6.356556 ACATACATACATACACACAGCCAAT 58.643 36.000 0.00 0.00 0.00 3.16
3996 9138 6.260714 ACATACATACATACACACAGCCAATG 59.739 38.462 0.00 0.00 0.00 2.82
3997 9139 3.947196 ACATACATACACACAGCCAATGG 59.053 43.478 0.00 0.00 0.00 3.16
3998 9140 1.838112 ACATACACACAGCCAATGGG 58.162 50.000 0.00 0.00 38.76 4.00
4000 9142 1.745087 CATACACACAGCCAATGGGTC 59.255 52.381 0.00 0.00 44.41 4.46
4001 9143 0.321210 TACACACAGCCAATGGGTCG 60.321 55.000 0.00 0.00 44.41 4.79
4002 9144 1.302431 CACACAGCCAATGGGTCGA 60.302 57.895 0.00 0.00 44.41 4.20
4003 9145 0.677731 CACACAGCCAATGGGTCGAT 60.678 55.000 0.00 0.00 44.41 3.59
4008 9150 2.247437 GCCAATGGGTCGATCTCGC 61.247 63.158 0.00 0.00 35.20 5.03
4045 9187 6.324819 CCACATTACATGGATCAAAGTTCAC 58.675 40.000 0.00 0.00 39.87 3.18
4057 9200 1.772063 AAGTTCACGCGTGCAAGACC 61.772 55.000 33.63 11.71 0.00 3.85
4060 9203 1.840630 TTCACGCGTGCAAGACCATG 61.841 55.000 33.63 7.05 0.00 3.66
4086 9229 1.609072 GTTCAGGAACTTCAGGTTGCC 59.391 52.381 4.95 0.00 45.53 4.52
4109 9288 2.124695 CGTTCTAGGGCCCCAAGC 60.125 66.667 21.43 5.19 42.60 4.01
4119 9298 3.358824 CCCCAAGCCCCCAAGGAT 61.359 66.667 0.00 0.00 38.24 3.24
4120 9299 2.280079 CCCAAGCCCCCAAGGATC 59.720 66.667 0.00 0.00 38.24 3.36
4121 9300 2.124151 CCAAGCCCCCAAGGATCG 60.124 66.667 0.00 0.00 38.24 3.69
4164 9350 1.078848 ACAAGGCGACAGCTCCATC 60.079 57.895 0.00 0.00 44.37 3.51
4196 9388 1.298859 CCTGAAACTTCTTCGCCCGG 61.299 60.000 0.00 0.00 0.00 5.73
4199 9391 1.296755 GAAACTTCTTCGCCCGGACC 61.297 60.000 0.73 0.00 0.00 4.46
4211 9403 2.432628 CGGACCCAACGCAGAGAC 60.433 66.667 0.00 0.00 0.00 3.36
4213 9405 3.112709 GACCCAACGCAGAGACGC 61.113 66.667 0.00 0.00 36.19 5.19
4241 9433 0.732880 CGCGGTTCGTCAGAATCACT 60.733 55.000 0.00 0.00 37.33 3.41
4246 9438 0.317160 TTCGTCAGAATCACTGCGGT 59.683 50.000 0.00 0.00 45.38 5.68
4270 9462 2.044452 GCAGAGTTTTTGCCTGCCT 58.956 52.632 0.00 0.00 45.38 4.75
4384 9576 3.741029 GAGTCATAACTCGCTGCCA 57.259 52.632 0.00 0.00 42.42 4.92
4444 9636 1.656818 GCCCATCATGAACCGTGGTG 61.657 60.000 11.27 5.20 31.86 4.17
4445 9637 1.656818 CCCATCATGAACCGTGGTGC 61.657 60.000 11.27 0.00 30.80 5.01
4464 9656 2.290260 TGCCATGATTCGTCTTCAAGGT 60.290 45.455 0.00 0.00 35.04 3.50
4465 9657 2.352960 GCCATGATTCGTCTTCAAGGTC 59.647 50.000 0.00 0.00 35.04 3.85
4466 9658 3.866651 CCATGATTCGTCTTCAAGGTCT 58.133 45.455 0.00 0.00 29.46 3.85
4467 9659 4.680708 GCCATGATTCGTCTTCAAGGTCTA 60.681 45.833 0.00 0.00 35.04 2.59
4471 9664 4.948004 TGATTCGTCTTCAAGGTCTAGCTA 59.052 41.667 0.00 0.00 0.00 3.32
4494 9687 1.073199 AAGCTCAACAACCTCCCCG 59.927 57.895 0.00 0.00 0.00 5.73
4503 9696 4.640690 ACCTCCCCGCTGTGGAGT 62.641 66.667 9.25 0.00 46.64 3.85
4504 9697 2.363795 CCTCCCCGCTGTGGAGTA 60.364 66.667 9.25 0.00 46.64 2.59
4505 9698 2.427245 CCTCCCCGCTGTGGAGTAG 61.427 68.421 9.25 2.87 46.64 2.57
4507 9700 0.395311 CTCCCCGCTGTGGAGTAGTA 60.395 60.000 9.25 0.00 43.68 1.82
4509 9702 0.683504 CCCCGCTGTGGAGTAGTACT 60.684 60.000 9.25 1.37 42.00 2.73
4510 9703 1.183549 CCCGCTGTGGAGTAGTACTT 58.816 55.000 9.25 0.00 42.00 2.24
4511 9704 1.135083 CCCGCTGTGGAGTAGTACTTG 60.135 57.143 9.25 0.00 42.00 3.16
4512 9705 1.135083 CCGCTGTGGAGTAGTACTTGG 60.135 57.143 0.00 0.00 42.00 3.61
4513 9706 1.544691 CGCTGTGGAGTAGTACTTGGT 59.455 52.381 0.00 0.00 0.00 3.67
4514 9707 2.671351 CGCTGTGGAGTAGTACTTGGTG 60.671 54.545 0.00 0.00 0.00 4.17
4515 9708 2.931320 GCTGTGGAGTAGTACTTGGTGC 60.931 54.545 0.00 2.87 0.00 5.01
4516 9709 2.563179 CTGTGGAGTAGTACTTGGTGCT 59.437 50.000 0.00 0.00 32.46 4.40
4519 9712 3.090037 TGGAGTAGTACTTGGTGCTCTC 58.910 50.000 0.00 0.00 30.04 3.20
4525 9750 2.171840 GTACTTGGTGCTCTCTCCTCA 58.828 52.381 0.00 0.00 0.00 3.86
4777 10003 2.120718 AGGGAGGGAGCTGTTCGT 59.879 61.111 0.00 0.00 0.00 3.85
4778 10004 1.536662 AGGGAGGGAGCTGTTCGTT 60.537 57.895 0.00 0.00 0.00 3.85
4779 10005 1.079057 GGGAGGGAGCTGTTCGTTC 60.079 63.158 0.00 0.00 0.00 3.95
4780 10006 1.446272 GGAGGGAGCTGTTCGTTCG 60.446 63.158 0.00 0.00 0.00 3.95
4781 10007 1.289380 GAGGGAGCTGTTCGTTCGT 59.711 57.895 0.00 0.00 0.00 3.85
4782 10008 0.319641 GAGGGAGCTGTTCGTTCGTT 60.320 55.000 0.00 0.00 0.00 3.85
4783 10009 0.319641 AGGGAGCTGTTCGTTCGTTC 60.320 55.000 0.00 0.00 0.00 3.95
4784 10010 1.289800 GGGAGCTGTTCGTTCGTTCC 61.290 60.000 0.00 0.00 0.00 3.62
4785 10011 0.319641 GGAGCTGTTCGTTCGTTCCT 60.320 55.000 0.00 0.00 0.00 3.36
4786 10012 1.061485 GAGCTGTTCGTTCGTTCCTC 58.939 55.000 0.00 0.00 0.00 3.71
4787 10013 0.387929 AGCTGTTCGTTCGTTCCTCA 59.612 50.000 0.00 0.00 0.00 3.86
4788 10014 0.507358 GCTGTTCGTTCGTTCCTCAC 59.493 55.000 0.00 0.00 0.00 3.51
4796 10022 4.412933 CGTTCCTCACGTGTGTGT 57.587 55.556 16.51 0.00 46.49 3.72
4797 10023 2.673074 CGTTCCTCACGTGTGTGTT 58.327 52.632 16.51 0.00 46.49 3.32
4798 10024 1.003851 CGTTCCTCACGTGTGTGTTT 58.996 50.000 16.51 0.00 46.49 2.83
4799 10025 1.005347 CGTTCCTCACGTGTGTGTTTC 60.005 52.381 16.51 1.20 46.49 2.78
4800 10026 2.004017 GTTCCTCACGTGTGTGTTTCA 58.996 47.619 16.51 0.00 46.49 2.69
4801 10027 2.612212 GTTCCTCACGTGTGTGTTTCAT 59.388 45.455 16.51 0.00 46.49 2.57
4802 10028 2.479837 TCCTCACGTGTGTGTTTCATC 58.520 47.619 16.51 0.00 46.49 2.92
4803 10029 2.159028 TCCTCACGTGTGTGTTTCATCA 60.159 45.455 16.51 0.00 46.49 3.07
4804 10030 2.807967 CCTCACGTGTGTGTTTCATCAT 59.192 45.455 16.51 0.00 46.49 2.45
4805 10031 3.364267 CCTCACGTGTGTGTTTCATCATG 60.364 47.826 16.51 0.00 46.49 3.07
4806 10032 3.202097 TCACGTGTGTGTTTCATCATGT 58.798 40.909 16.51 0.00 46.49 3.21
4807 10033 3.625313 TCACGTGTGTGTTTCATCATGTT 59.375 39.130 16.51 0.00 46.49 2.71
4808 10034 3.968096 CACGTGTGTGTTTCATCATGTTC 59.032 43.478 7.58 0.00 41.34 3.18
4809 10035 3.003275 ACGTGTGTGTTTCATCATGTTCC 59.997 43.478 0.00 0.00 29.78 3.62
4810 10036 3.554524 GTGTGTGTTTCATCATGTTCCG 58.445 45.455 0.00 0.00 0.00 4.30
4811 10037 2.031245 TGTGTGTTTCATCATGTTCCGC 60.031 45.455 0.00 0.00 0.00 5.54
4812 10038 1.196581 TGTGTTTCATCATGTTCCGCG 59.803 47.619 0.00 0.00 0.00 6.46
4813 10039 1.463056 GTGTTTCATCATGTTCCGCGA 59.537 47.619 8.23 0.00 0.00 5.87
4814 10040 2.095853 GTGTTTCATCATGTTCCGCGAT 59.904 45.455 8.23 0.00 0.00 4.58
4815 10041 2.095692 TGTTTCATCATGTTCCGCGATG 59.904 45.455 8.23 2.83 38.29 3.84
4816 10042 2.307934 TTCATCATGTTCCGCGATGA 57.692 45.000 8.23 9.48 42.80 2.92
4817 10043 1.570813 TCATCATGTTCCGCGATGAC 58.429 50.000 8.23 3.29 40.37 3.06
4818 10044 0.583438 CATCATGTTCCGCGATGACC 59.417 55.000 8.23 0.00 39.09 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.241990 GGAGGAACTTGCCGTTTCCC 61.242 60.000 4.18 0.00 41.55 3.97
140 146 1.808390 ACGGTTTGGATCGTAGCGC 60.808 57.895 0.00 0.00 37.88 5.92
157 163 4.822026 GGCACCTCACCTGTATATATCAC 58.178 47.826 0.00 0.00 0.00 3.06
175 181 4.475135 GAGGGAGAAGGCGGGCAC 62.475 72.222 3.78 0.00 0.00 5.01
176 182 4.722535 AGAGGGAGAAGGCGGGCA 62.723 66.667 3.78 0.00 0.00 5.36
178 184 2.042435 AGAGAGGGAGAAGGCGGG 60.042 66.667 0.00 0.00 0.00 6.13
179 185 1.684049 ACAGAGAGGGAGAAGGCGG 60.684 63.158 0.00 0.00 0.00 6.13
180 186 1.254284 ACACAGAGAGGGAGAAGGCG 61.254 60.000 0.00 0.00 0.00 5.52
221 229 0.177141 TCCACATTAGGCTGGCGTAC 59.823 55.000 0.00 0.00 0.00 3.67
277 285 1.553248 ACGGCACAGCTTTACCATCTA 59.447 47.619 0.00 0.00 0.00 1.98
287 295 1.160137 GATTTCTTCACGGCACAGCT 58.840 50.000 0.00 0.00 0.00 4.24
295 303 2.069273 AGAAGCACGGATTTCTTCACG 58.931 47.619 0.00 0.00 38.83 4.35
334 2275 1.135333 ACGCTCGGATTTCTTCCTCTC 59.865 52.381 0.00 0.00 42.99 3.20
431 2395 3.611517 GATCGATTCAAAGCCATCAACG 58.388 45.455 0.00 0.00 0.00 4.10
534 2504 2.882137 GGAGTTGCTCGCTCTACTCTAT 59.118 50.000 14.04 0.00 37.68 1.98
541 2512 0.322975 ATTGTGGAGTTGCTCGCTCT 59.677 50.000 0.00 0.00 33.73 4.09
543 2514 0.674895 GGATTGTGGAGTTGCTCGCT 60.675 55.000 0.00 0.00 0.00 4.93
549 2520 3.689347 TGGAATCTGGATTGTGGAGTTG 58.311 45.455 0.17 0.00 0.00 3.16
550 2521 3.588842 TCTGGAATCTGGATTGTGGAGTT 59.411 43.478 0.17 0.00 0.00 3.01
557 2528 8.915057 ATAAATACTGTCTGGAATCTGGATTG 57.085 34.615 0.17 0.00 0.00 2.67
583 2554 7.124052 AGGCTTCTGTACCTTCTAACAGTATA 58.876 38.462 2.72 0.00 42.96 1.47
584 2555 5.958987 AGGCTTCTGTACCTTCTAACAGTAT 59.041 40.000 2.72 0.00 42.96 2.12
589 2560 6.283544 AGTTAGGCTTCTGTACCTTCTAAC 57.716 41.667 0.00 0.00 37.50 2.34
658 4653 1.890876 TCAGCTGCGGTTACATTTGT 58.109 45.000 9.47 0.00 0.00 2.83
693 4688 1.379527 CTGGTAATTCGGCTGTTCCC 58.620 55.000 0.00 0.00 0.00 3.97
694 4689 1.379527 CCTGGTAATTCGGCTGTTCC 58.620 55.000 0.00 0.00 0.00 3.62
695 4690 0.733150 GCCTGGTAATTCGGCTGTTC 59.267 55.000 0.00 0.00 40.62 3.18
700 4695 2.119029 GGTGGCCTGGTAATTCGGC 61.119 63.158 3.32 0.00 43.03 5.54
713 4708 2.845019 GTACTTTGGGTACGGTGGC 58.155 57.895 0.00 0.00 40.90 5.01
766 4761 2.742589 GTCCGAAGAAGGATTTCACCAC 59.257 50.000 0.00 0.00 43.04 4.16
767 4762 2.637872 AGTCCGAAGAAGGATTTCACCA 59.362 45.455 0.00 0.00 43.04 4.17
783 4784 2.031682 GGCATTAGCATTAGCAAGTCCG 60.032 50.000 0.00 0.00 45.49 4.79
793 4794 1.202604 GCTGGCATTGGCATTAGCATT 60.203 47.619 13.83 0.00 44.61 3.56
794 4795 0.391597 GCTGGCATTGGCATTAGCAT 59.608 50.000 13.83 0.00 44.61 3.79
795 4796 0.971447 TGCTGGCATTGGCATTAGCA 60.971 50.000 17.87 17.87 44.83 3.49
796 4797 0.249322 CTGCTGGCATTGGCATTAGC 60.249 55.000 13.83 13.82 43.71 3.09
797 4798 1.337071 CTCTGCTGGCATTGGCATTAG 59.663 52.381 13.83 13.97 43.71 1.73
798 4799 1.341285 ACTCTGCTGGCATTGGCATTA 60.341 47.619 13.83 5.01 43.71 1.90
799 4800 0.613853 ACTCTGCTGGCATTGGCATT 60.614 50.000 13.83 0.00 43.71 3.56
800 4801 1.000019 ACTCTGCTGGCATTGGCAT 60.000 52.632 13.83 0.00 43.71 4.40
801 4802 1.974875 CACTCTGCTGGCATTGGCA 60.975 57.895 12.78 12.78 43.71 4.92
802 4803 2.707849 CCACTCTGCTGGCATTGGC 61.708 63.158 2.73 2.73 40.13 4.52
803 4804 3.599584 CCACTCTGCTGGCATTGG 58.400 61.111 0.00 0.16 0.00 3.16
838 4845 2.041216 AGATTGGTAACTTTTCGGCCCT 59.959 45.455 0.00 0.00 37.61 5.19
839 4846 2.443416 AGATTGGTAACTTTTCGGCCC 58.557 47.619 0.00 0.00 37.61 5.80
840 4847 3.756963 AGAAGATTGGTAACTTTTCGGCC 59.243 43.478 0.00 0.00 37.61 6.13
841 4848 4.379499 CCAGAAGATTGGTAACTTTTCGGC 60.379 45.833 0.00 0.00 33.38 5.54
842 4849 4.379499 GCCAGAAGATTGGTAACTTTTCGG 60.379 45.833 0.00 0.00 40.49 4.30
858 4872 2.095263 CACACAAATTACCGGCCAGAAG 60.095 50.000 0.00 0.00 0.00 2.85
861 4875 0.109319 GCACACAAATTACCGGCCAG 60.109 55.000 0.00 0.00 0.00 4.85
866 4881 4.085884 GTGAATACGCACACAAATTACCG 58.914 43.478 0.00 0.00 38.63 4.02
902 4917 0.033090 GGACTCGGAAAAGGACACGT 59.967 55.000 0.00 0.00 0.00 4.49
903 4918 0.032952 TGGACTCGGAAAAGGACACG 59.967 55.000 0.00 0.00 0.00 4.49
959 4977 1.800681 CTTCTTTAAAGCGGCCGGG 59.199 57.895 29.38 0.00 0.00 5.73
963 4981 2.989422 TCTTGCTTCTTTAAAGCGGC 57.011 45.000 18.68 18.68 45.80 6.53
975 4993 2.666022 GTGCAACGTTTGTTTCTTGCTT 59.334 40.909 0.00 0.00 39.81 3.91
1061 5092 3.700350 CCCTCCCCTCACCTCCCT 61.700 72.222 0.00 0.00 0.00 4.20
1064 5095 1.460497 GATCCCCTCCCCTCACCTC 60.460 68.421 0.00 0.00 0.00 3.85
1065 5096 2.706071 GATCCCCTCCCCTCACCT 59.294 66.667 0.00 0.00 0.00 4.00
1068 5099 1.152247 CATCGATCCCCTCCCCTCA 60.152 63.158 0.00 0.00 0.00 3.86
1069 5100 1.915769 CCATCGATCCCCTCCCCTC 60.916 68.421 0.00 0.00 0.00 4.30
1070 5101 2.205462 CCATCGATCCCCTCCCCT 59.795 66.667 0.00 0.00 0.00 4.79
1071 5102 2.930562 CCCATCGATCCCCTCCCC 60.931 72.222 0.00 0.00 0.00 4.81
1535 5588 4.088056 TGTTGGATGAAGAACGGGTAAA 57.912 40.909 0.00 0.00 0.00 2.01
1536 5589 3.773418 TGTTGGATGAAGAACGGGTAA 57.227 42.857 0.00 0.00 0.00 2.85
1537 5590 3.325425 TCTTGTTGGATGAAGAACGGGTA 59.675 43.478 0.00 0.00 0.00 3.69
1552 5605 4.818546 AGTGACCAGTTCATCTTCTTGTTG 59.181 41.667 0.00 0.00 36.32 3.33
1585 5918 7.621991 CATCCTAGTTAATTTACTGCGAAGTG 58.378 38.462 6.22 0.00 0.00 3.16
1611 5944 4.337763 GTCAAGCGTAATGAGATGCAAAG 58.662 43.478 0.00 0.00 33.52 2.77
1654 5987 2.756400 GTGCCACCTGATGTCCCA 59.244 61.111 0.00 0.00 0.00 4.37
1677 6010 7.769044 ACAAACTAGTCTACAACAAATCACACT 59.231 33.333 0.00 0.00 0.00 3.55
1712 6048 1.688772 AGCTTCAGGCCATAATGCAG 58.311 50.000 5.01 0.00 43.05 4.41
1879 6219 4.512944 TCTGTTGAGAAATGTCAGTGAAGC 59.487 41.667 0.00 0.00 0.00 3.86
1882 6222 5.535753 TCTCTGTTGAGAAATGTCAGTGA 57.464 39.130 0.00 0.00 45.42 3.41
1897 6237 3.409026 CCTAGCACAGGTTTCTCTGTT 57.591 47.619 0.00 0.00 44.74 3.16
1923 6263 2.966309 GAGAAAAGCCACGGCACCG 61.966 63.158 11.35 7.71 44.88 4.94
2138 6507 1.604438 GCGGGAACACCACAATTTTCC 60.604 52.381 0.00 0.00 40.22 3.13
2149 6518 1.523938 GGCATCTAGGCGGGAACAC 60.524 63.158 0.00 0.00 33.57 3.32
2150 6519 2.742116 GGGCATCTAGGCGGGAACA 61.742 63.158 0.00 0.00 45.36 3.18
2181 6551 7.037438 GGCTGCAAATTTTGAGAGATTTATGA 58.963 34.615 13.26 0.00 0.00 2.15
2184 6554 6.594788 AGGCTGCAAATTTTGAGAGATTTA 57.405 33.333 13.26 0.00 0.00 1.40
2202 6572 2.691011 GAGGGAGTACAAGACTAGGCTG 59.309 54.545 0.00 0.00 39.06 4.85
2219 6589 1.199097 CATTTGTTTCCGAACGGAGGG 59.801 52.381 15.34 0.00 46.06 4.30
2220 6590 1.199097 CCATTTGTTTCCGAACGGAGG 59.801 52.381 15.34 8.28 46.06 4.30
2222 6592 1.970092 ACCATTTGTTTCCGAACGGA 58.030 45.000 12.04 12.04 43.52 4.69
2224 6594 3.073144 ACAACCATTTGTTTCCGAACG 57.927 42.857 0.00 0.00 43.89 3.95
2226 6596 7.162761 TCTAGATACAACCATTTGTTTCCGAA 58.837 34.615 0.00 0.00 43.89 4.30
2247 6617 9.877178 ACTTGTCTTAGAAATGGTTGTATCTAG 57.123 33.333 0.00 0.00 0.00 2.43
2249 6619 8.157476 ACACTTGTCTTAGAAATGGTTGTATCT 58.843 33.333 0.00 0.00 0.00 1.98
2250 6620 8.230486 CACACTTGTCTTAGAAATGGTTGTATC 58.770 37.037 0.00 0.00 0.00 2.24
2251 6621 7.174946 CCACACTTGTCTTAGAAATGGTTGTAT 59.825 37.037 0.00 0.00 0.00 2.29
2253 6623 5.299279 CCACACTTGTCTTAGAAATGGTTGT 59.701 40.000 0.00 0.00 0.00 3.32
2254 6624 5.278463 CCCACACTTGTCTTAGAAATGGTTG 60.278 44.000 0.00 0.00 0.00 3.77
2255 6625 4.827284 CCCACACTTGTCTTAGAAATGGTT 59.173 41.667 0.00 0.00 0.00 3.67
2256 6626 4.104102 TCCCACACTTGTCTTAGAAATGGT 59.896 41.667 0.00 0.00 0.00 3.55
2257 6627 4.651778 TCCCACACTTGTCTTAGAAATGG 58.348 43.478 0.00 0.00 0.00 3.16
2258 6628 5.308825 ACTCCCACACTTGTCTTAGAAATG 58.691 41.667 0.00 0.00 0.00 2.32
2259 6629 5.568620 ACTCCCACACTTGTCTTAGAAAT 57.431 39.130 0.00 0.00 0.00 2.17
2262 6632 4.476297 TGTACTCCCACACTTGTCTTAGA 58.524 43.478 0.00 0.00 0.00 2.10
2263 6633 4.281182 ACTGTACTCCCACACTTGTCTTAG 59.719 45.833 0.00 0.00 0.00 2.18
2264 6634 4.220724 ACTGTACTCCCACACTTGTCTTA 58.779 43.478 0.00 0.00 0.00 2.10
2265 6635 3.039011 ACTGTACTCCCACACTTGTCTT 58.961 45.455 0.00 0.00 0.00 3.01
2266 6636 2.679082 ACTGTACTCCCACACTTGTCT 58.321 47.619 0.00 0.00 0.00 3.41
2269 6639 5.243283 AGTTACTACTGTACTCCCACACTTG 59.757 44.000 0.00 0.00 31.99 3.16
2271 6641 4.765856 CAGTTACTACTGTACTCCCACACT 59.234 45.833 0.00 0.00 45.46 3.55
2272 6642 5.056894 CAGTTACTACTGTACTCCCACAC 57.943 47.826 0.00 0.00 45.46 3.82
2343 6754 5.986135 CCGAAGCATGCTACTAGTCTTTTAT 59.014 40.000 23.00 0.00 0.00 1.40
2355 6777 2.100197 AGTACACTCCGAAGCATGCTA 58.900 47.619 23.00 3.82 0.00 3.49
2357 6779 1.394917 CAAGTACACTCCGAAGCATGC 59.605 52.381 10.51 10.51 0.00 4.06
2358 6780 2.413112 CACAAGTACACTCCGAAGCATG 59.587 50.000 0.00 0.00 0.00 4.06
2504 6997 0.676151 CCAGCTTCTTCACCTGGCTC 60.676 60.000 0.00 0.00 39.64 4.70
2589 7091 2.055310 TACGTACGAGAGGCGCATGG 62.055 60.000 24.41 0.00 46.04 3.66
2592 7094 2.753966 GGTACGTACGAGAGGCGCA 61.754 63.158 24.41 0.00 46.04 6.09
2595 7097 1.431036 GGTGGTACGTACGAGAGGC 59.569 63.158 24.41 8.67 0.00 4.70
2596 7098 1.717937 CGGTGGTACGTACGAGAGG 59.282 63.158 24.41 4.22 0.00 3.69
2597 7099 1.061570 GCGGTGGTACGTACGAGAG 59.938 63.158 24.41 12.61 35.98 3.20
2598 7100 0.108377 TAGCGGTGGTACGTACGAGA 60.108 55.000 24.41 6.39 35.98 4.04
2599 7101 0.026803 GTAGCGGTGGTACGTACGAG 59.973 60.000 24.41 10.95 35.98 4.18
2600 7102 0.672091 TGTAGCGGTGGTACGTACGA 60.672 55.000 24.41 13.07 39.09 3.43
2601 7103 0.247814 CTGTAGCGGTGGTACGTACG 60.248 60.000 18.98 15.01 39.09 3.67
2602 7104 0.524180 GCTGTAGCGGTGGTACGTAC 60.524 60.000 17.56 17.56 39.09 3.67
2603 7105 0.959867 TGCTGTAGCGGTGGTACGTA 60.960 55.000 0.00 0.00 45.83 3.57
2604 7106 2.270257 TGCTGTAGCGGTGGTACGT 61.270 57.895 0.00 0.00 45.83 3.57
2637 7139 3.091545 CAAAGGGATACAGGTTGTGCAT 58.908 45.455 0.00 0.00 39.74 3.96
2642 7174 2.742053 CGTGACAAAGGGATACAGGTTG 59.258 50.000 0.00 0.00 39.74 3.77
2643 7175 2.290071 CCGTGACAAAGGGATACAGGTT 60.290 50.000 0.00 0.00 35.72 3.50
2670 7205 9.694137 GCTTTTATACTTTCTATACAGGACGAT 57.306 33.333 0.00 0.00 0.00 3.73
2671 7206 7.859377 CGCTTTTATACTTTCTATACAGGACGA 59.141 37.037 0.00 0.00 0.00 4.20
2673 7208 9.525409 TTCGCTTTTATACTTTCTATACAGGAC 57.475 33.333 0.00 0.00 0.00 3.85
2674 7209 9.745880 CTTCGCTTTTATACTTTCTATACAGGA 57.254 33.333 0.00 0.00 0.00 3.86
2675 7210 9.745880 TCTTCGCTTTTATACTTTCTATACAGG 57.254 33.333 0.00 0.00 0.00 4.00
2689 7224 8.436200 GCGATGTATTAGATTCTTCGCTTTTAT 58.564 33.333 16.81 0.00 44.12 1.40
2690 7225 7.784176 GCGATGTATTAGATTCTTCGCTTTTA 58.216 34.615 16.81 0.00 44.12 1.52
2696 7231 4.090642 GCCAGCGATGTATTAGATTCTTCG 59.909 45.833 0.00 0.00 32.87 3.79
2706 7241 2.408333 GCCAAGCCAGCGATGTATT 58.592 52.632 0.00 0.00 0.00 1.89
2748 7291 4.142093 CCCAAGATCTATGTTTGCAAAGGG 60.142 45.833 13.26 11.50 0.00 3.95
2761 7304 3.181329 TGGTGAAAGCTCCCAAGATCTA 58.819 45.455 0.00 0.00 33.76 1.98
2765 7316 1.887956 GCATGGTGAAAGCTCCCAAGA 60.888 52.381 0.00 0.00 33.76 3.02
2769 7320 0.968405 TTTGCATGGTGAAAGCTCCC 59.032 50.000 0.00 0.00 33.76 4.30
2771 7322 3.442977 AGATCTTTGCATGGTGAAAGCTC 59.557 43.478 0.00 0.00 33.76 4.09
2772 7323 3.428532 AGATCTTTGCATGGTGAAAGCT 58.571 40.909 0.00 0.00 33.76 3.74
2773 7324 3.863142 AGATCTTTGCATGGTGAAAGC 57.137 42.857 0.00 0.00 0.00 3.51
2819 7370 4.261031 GCTTTCAACTTTCTCCGCTTGTAA 60.261 41.667 0.00 0.00 0.00 2.41
2936 7539 8.287439 TCTCTGAACTCTGAATACCTTTCTAG 57.713 38.462 0.00 0.00 0.00 2.43
2946 7551 5.260424 TGCTCTACTCTCTGAACTCTGAAT 58.740 41.667 0.00 0.00 0.00 2.57
2979 7584 7.491696 GTGTAATACTACAGTAAAAGGCAGAGG 59.508 40.741 0.00 0.00 38.73 3.69
3011 7629 1.071385 GCTGGCACATGGCTCTACTAT 59.929 52.381 7.00 0.00 44.01 2.12
3045 8040 1.377333 GGAAGGACAGGGAAAGGCG 60.377 63.158 0.00 0.00 0.00 5.52
3063 8058 7.199766 ACTCGATTCATCTAGAGTTTAAGCTG 58.800 38.462 0.00 0.00 40.64 4.24
3196 8209 3.136992 ACTTTTCTTCTTCGTGGGGGTTA 59.863 43.478 0.00 0.00 0.00 2.85
3236 8265 1.063174 GCTCGACATGGCAGTTGAATC 59.937 52.381 0.00 0.00 31.76 2.52
3252 8285 2.739885 AGGATAATGCTAGCAGCTCG 57.260 50.000 23.89 0.00 42.97 5.03
3305 8367 0.250684 TGCGACCACAACCACATCAT 60.251 50.000 0.00 0.00 0.00 2.45
3315 8377 0.957362 TGCATCATTTTGCGACCACA 59.043 45.000 0.00 0.00 45.77 4.17
3319 8381 1.916000 GAAGCTGCATCATTTTGCGAC 59.084 47.619 1.02 0.00 45.77 5.19
3320 8382 1.540707 TGAAGCTGCATCATTTTGCGA 59.459 42.857 3.07 0.00 45.77 5.10
3321 8383 1.985334 TGAAGCTGCATCATTTTGCG 58.015 45.000 3.07 0.00 45.77 4.85
3322 8384 2.030457 GCATGAAGCTGCATCATTTTGC 59.970 45.455 16.86 15.18 41.87 3.68
3323 8385 2.281498 CGCATGAAGCTGCATCATTTTG 59.719 45.455 16.86 9.64 42.40 2.44
3324 8386 2.536365 CGCATGAAGCTGCATCATTTT 58.464 42.857 16.86 0.00 42.40 1.82
3489 8551 1.294659 GGCTCTTGGTGCGAGTGAAG 61.295 60.000 0.00 0.00 0.00 3.02
3497 8559 2.045536 CAGGGAGGCTCTTGGTGC 60.046 66.667 15.23 0.00 0.00 5.01
3548 8610 3.441222 GGTCATTGTTGCAGTGATCATCA 59.559 43.478 0.00 0.00 32.59 3.07
3550 8612 2.756760 GGGTCATTGTTGCAGTGATCAT 59.243 45.455 0.00 0.00 33.72 2.45
3582 8644 5.412594 GCACAGATTCAAACATACAAGGAGA 59.587 40.000 0.00 0.00 0.00 3.71
3583 8645 5.634896 GCACAGATTCAAACATACAAGGAG 58.365 41.667 0.00 0.00 0.00 3.69
3584 8646 4.154015 CGCACAGATTCAAACATACAAGGA 59.846 41.667 0.00 0.00 0.00 3.36
3585 8647 4.083324 ACGCACAGATTCAAACATACAAGG 60.083 41.667 0.00 0.00 0.00 3.61
3598 8660 3.206150 AGAGAAAACACACGCACAGATT 58.794 40.909 0.00 0.00 0.00 2.40
3599 8661 2.802816 GAGAGAAAACACACGCACAGAT 59.197 45.455 0.00 0.00 0.00 2.90
3636 8704 0.248580 CACACACGCACAACAAGCAT 60.249 50.000 0.00 0.00 0.00 3.79
3637 8705 1.136356 CACACACGCACAACAAGCA 59.864 52.632 0.00 0.00 0.00 3.91
3638 8706 0.455972 AACACACACGCACAACAAGC 60.456 50.000 0.00 0.00 0.00 4.01
3639 8707 1.258427 CAACACACACGCACAACAAG 58.742 50.000 0.00 0.00 0.00 3.16
3640 8708 0.593618 ACAACACACACGCACAACAA 59.406 45.000 0.00 0.00 0.00 2.83
3641 8709 0.167033 GACAACACACACGCACAACA 59.833 50.000 0.00 0.00 0.00 3.33
3642 8710 0.167033 TGACAACACACACGCACAAC 59.833 50.000 0.00 0.00 0.00 3.32
3643 8711 1.090728 ATGACAACACACACGCACAA 58.909 45.000 0.00 0.00 0.00 3.33
3644 8712 1.063321 GAATGACAACACACACGCACA 59.937 47.619 0.00 0.00 0.00 4.57
3645 8713 1.596954 GGAATGACAACACACACGCAC 60.597 52.381 0.00 0.00 0.00 5.34
3646 8714 0.660488 GGAATGACAACACACACGCA 59.340 50.000 0.00 0.00 0.00 5.24
3647 8715 0.944386 AGGAATGACAACACACACGC 59.056 50.000 0.00 0.00 0.00 5.34
3648 8716 2.286950 CCAAGGAATGACAACACACACG 60.287 50.000 0.00 0.00 0.00 4.49
3672 8740 7.496529 TTGGCTTTACATCAGCATAGTAATC 57.503 36.000 0.00 0.00 39.21 1.75
3717 8802 0.179076 CACGCAGGGCACAGATATGA 60.179 55.000 0.00 0.00 0.00 2.15
3729 8814 3.347958 ACAAACAAACATACACGCAGG 57.652 42.857 0.00 0.00 0.00 4.85
3754 8843 0.578683 CACTGTGTGTCGTGCTCAAG 59.421 55.000 0.00 0.00 0.00 3.02
3762 8851 0.235665 GGTTCATGCACTGTGTGTCG 59.764 55.000 9.86 0.00 35.75 4.35
3781 8870 8.509690 ACACTTCAGATGATAGTTCAAATTGTG 58.490 33.333 0.00 0.00 34.96 3.33
3792 8917 4.033358 GCCGTCAAACACTTCAGATGATAG 59.967 45.833 0.00 0.00 0.00 2.08
3899 9039 2.154462 CAACCTCCAGTTTGGCTGTAG 58.846 52.381 0.00 0.00 43.55 2.74
3901 9041 0.550914 TCAACCTCCAGTTTGGCTGT 59.449 50.000 0.00 0.00 43.55 4.40
3917 9057 0.944386 GTTCTTGCAGGCGTCTTCAA 59.056 50.000 1.40 1.40 0.00 2.69
3922 9062 0.730494 GCAATGTTCTTGCAGGCGTC 60.730 55.000 5.13 0.00 44.34 5.19
3959 9101 9.067986 TGTATGTATGTATGTCTCTACTGAAGG 57.932 37.037 0.00 0.00 0.00 3.46
3973 9115 5.764686 CCATTGGCTGTGTGTATGTATGTAT 59.235 40.000 0.00 0.00 0.00 2.29
3983 9125 1.600636 CGACCCATTGGCTGTGTGT 60.601 57.895 0.00 0.00 33.59 3.72
3984 9126 0.677731 ATCGACCCATTGGCTGTGTG 60.678 55.000 0.00 0.00 33.59 3.82
3985 9127 0.392998 GATCGACCCATTGGCTGTGT 60.393 55.000 0.00 0.00 33.59 3.72
3986 9128 0.107508 AGATCGACCCATTGGCTGTG 60.108 55.000 0.00 0.00 33.59 3.66
3987 9129 0.179000 GAGATCGACCCATTGGCTGT 59.821 55.000 0.00 0.00 33.59 4.40
3988 9130 0.877649 CGAGATCGACCCATTGGCTG 60.878 60.000 0.00 0.00 43.02 4.85
3989 9131 1.443407 CGAGATCGACCCATTGGCT 59.557 57.895 0.00 0.00 43.02 4.75
3990 9132 2.247437 GCGAGATCGACCCATTGGC 61.247 63.158 6.39 0.00 43.02 4.52
3991 9133 1.951130 CGCGAGATCGACCCATTGG 60.951 63.158 0.00 0.00 43.02 3.16
3992 9134 2.589492 GCGCGAGATCGACCCATTG 61.589 63.158 12.10 0.00 43.02 2.82
3993 9135 2.279517 GCGCGAGATCGACCCATT 60.280 61.111 12.10 0.00 43.02 3.16
3994 9136 4.630785 CGCGCGAGATCGACCCAT 62.631 66.667 28.94 0.00 43.02 4.00
3996 9138 4.547905 TTCGCGCGAGATCGACCC 62.548 66.667 32.74 0.00 43.02 4.46
3997 9139 3.313257 GTTCGCGCGAGATCGACC 61.313 66.667 32.74 11.69 43.02 4.79
3998 9140 3.313257 GGTTCGCGCGAGATCGAC 61.313 66.667 32.74 25.89 43.02 4.20
3999 9141 3.120979 ATGGTTCGCGCGAGATCGA 62.121 57.895 32.74 22.44 43.02 3.59
4000 9142 2.655364 ATGGTTCGCGCGAGATCG 60.655 61.111 32.74 5.30 43.27 3.69
4001 9143 1.812214 GACATGGTTCGCGCGAGATC 61.812 60.000 32.74 24.35 0.00 2.75
4002 9144 1.878522 GACATGGTTCGCGCGAGAT 60.879 57.895 32.74 21.86 0.00 2.75
4003 9145 2.506217 GACATGGTTCGCGCGAGA 60.506 61.111 32.74 20.57 0.00 4.04
4008 9150 1.305219 AATGTGGGACATGGTTCGCG 61.305 55.000 0.00 0.00 44.52 5.87
4057 9200 1.742761 AGTTCCTGAACCGATGCATG 58.257 50.000 2.46 0.00 42.06 4.06
4060 9203 1.734465 CTGAAGTTCCTGAACCGATGC 59.266 52.381 6.41 0.00 42.06 3.91
4086 9229 2.813908 GGCCCTAGAACGTGCGTG 60.814 66.667 0.00 0.00 0.00 5.34
4109 9288 2.078665 ATGGGACGATCCTTGGGGG 61.079 63.158 0.00 0.00 36.57 5.40
4110 9289 1.149174 CATGGGACGATCCTTGGGG 59.851 63.158 0.00 0.00 36.57 4.96
4111 9290 0.546122 TTCATGGGACGATCCTTGGG 59.454 55.000 12.04 0.00 36.57 4.12
4112 9291 1.668419 GTTCATGGGACGATCCTTGG 58.332 55.000 12.04 0.00 36.57 3.61
4113 9292 1.134818 TCGTTCATGGGACGATCCTTG 60.135 52.381 17.37 0.00 43.79 3.61
4114 9293 1.137086 CTCGTTCATGGGACGATCCTT 59.863 52.381 20.21 0.00 46.93 3.36
4115 9294 0.747255 CTCGTTCATGGGACGATCCT 59.253 55.000 20.21 0.00 46.93 3.24
4117 9296 1.209275 CGCTCGTTCATGGGACGATC 61.209 60.000 20.21 16.45 46.93 3.69
4118 9297 1.226974 CGCTCGTTCATGGGACGAT 60.227 57.895 20.21 0.00 46.93 3.73
4119 9298 2.180769 CGCTCGTTCATGGGACGA 59.819 61.111 19.25 19.25 46.15 4.20
4120 9299 2.885644 CCGCTCGTTCATGGGACG 60.886 66.667 13.95 13.95 41.62 4.79
4121 9300 2.511600 CCCGCTCGTTCATGGGAC 60.512 66.667 0.00 0.00 44.88 4.46
4134 9319 2.750888 GCCTTGTGTCGATTCCCGC 61.751 63.158 0.00 0.00 38.37 6.13
4178 9369 0.320421 TCCGGGCGAAGAAGTTTCAG 60.320 55.000 0.00 0.00 0.00 3.02
4196 9388 3.112709 GCGTCTCTGCGTTGGGTC 61.113 66.667 0.00 0.00 0.00 4.46
4222 9414 2.894919 CAGTGATTCTGACGAACCGCG 61.895 57.143 0.00 0.00 46.27 6.46
4229 9421 4.578913 ACCGCAGTGATTCTGACG 57.421 55.556 0.00 2.71 46.27 4.35
4341 9533 1.894978 GCTGCTAGGAGGAGGATAGGG 60.895 61.905 13.67 0.00 33.92 3.53
4395 9587 3.313524 GTGGGGGCAAAAGCCTGG 61.314 66.667 6.45 0.00 0.00 4.45
4444 9636 2.352960 GACCTTGAAGACGAATCATGGC 59.647 50.000 15.93 9.23 42.76 4.40
4445 9637 3.866651 AGACCTTGAAGACGAATCATGG 58.133 45.455 15.04 15.04 43.91 3.66
4494 9687 2.931320 GCACCAAGTACTACTCCACAGC 60.931 54.545 0.00 0.00 0.00 4.40
4503 9696 3.010250 TGAGGAGAGAGCACCAAGTACTA 59.990 47.826 0.00 0.00 0.00 1.82
4504 9697 2.225142 TGAGGAGAGAGCACCAAGTACT 60.225 50.000 0.00 0.00 0.00 2.73
4505 9698 2.171840 TGAGGAGAGAGCACCAAGTAC 58.828 52.381 0.00 0.00 0.00 2.73
4507 9700 1.949799 ATGAGGAGAGAGCACCAAGT 58.050 50.000 0.00 0.00 0.00 3.16
4509 9702 4.100653 CAGAATATGAGGAGAGAGCACCAA 59.899 45.833 0.00 0.00 0.00 3.67
4510 9703 3.640498 CAGAATATGAGGAGAGAGCACCA 59.360 47.826 0.00 0.00 0.00 4.17
4511 9704 3.640967 ACAGAATATGAGGAGAGAGCACC 59.359 47.826 0.00 0.00 0.00 5.01
4512 9705 4.935352 ACAGAATATGAGGAGAGAGCAC 57.065 45.455 0.00 0.00 0.00 4.40
4513 9706 5.451103 CGAAACAGAATATGAGGAGAGAGCA 60.451 44.000 0.00 0.00 0.00 4.26
4514 9707 4.981674 CGAAACAGAATATGAGGAGAGAGC 59.018 45.833 0.00 0.00 0.00 4.09
4515 9708 6.384258 TCGAAACAGAATATGAGGAGAGAG 57.616 41.667 0.00 0.00 0.00 3.20
4516 9709 5.221145 GCTCGAAACAGAATATGAGGAGAGA 60.221 44.000 0.00 0.00 0.00 3.10
4519 9712 4.505922 GTGCTCGAAACAGAATATGAGGAG 59.494 45.833 0.00 0.00 0.00 3.69
4760 9986 1.536662 AACGAACAGCTCCCTCCCT 60.537 57.895 0.00 0.00 0.00 4.20
4761 9987 1.079057 GAACGAACAGCTCCCTCCC 60.079 63.158 0.00 0.00 0.00 4.30
4762 9988 1.446272 CGAACGAACAGCTCCCTCC 60.446 63.158 0.00 0.00 0.00 4.30
4763 9989 0.319641 AACGAACGAACAGCTCCCTC 60.320 55.000 0.14 0.00 0.00 4.30
4764 9990 0.319641 GAACGAACGAACAGCTCCCT 60.320 55.000 0.14 0.00 0.00 4.20
4765 9991 1.289800 GGAACGAACGAACAGCTCCC 61.290 60.000 0.14 0.00 0.00 4.30
4766 9992 0.319641 AGGAACGAACGAACAGCTCC 60.320 55.000 0.14 0.00 0.00 4.70
4767 9993 1.061485 GAGGAACGAACGAACAGCTC 58.939 55.000 0.14 0.00 0.00 4.09
4768 9994 0.387929 TGAGGAACGAACGAACAGCT 59.612 50.000 0.14 0.00 0.00 4.24
4769 9995 0.507358 GTGAGGAACGAACGAACAGC 59.493 55.000 0.14 0.00 0.00 4.40
4780 10006 2.004017 TGAAACACACACGTGAGGAAC 58.996 47.619 25.01 7.65 46.80 3.62
4781 10007 2.388310 TGAAACACACACGTGAGGAA 57.612 45.000 25.01 0.00 46.80 3.36
4782 10008 2.159028 TGATGAAACACACACGTGAGGA 60.159 45.455 25.01 0.00 46.80 3.71
4783 10009 2.209273 TGATGAAACACACACGTGAGG 58.791 47.619 25.01 16.14 46.80 3.86
4784 10010 3.248363 ACATGATGAAACACACACGTGAG 59.752 43.478 25.01 18.00 46.80 3.51
4785 10011 3.202097 ACATGATGAAACACACACGTGA 58.798 40.909 25.01 0.00 46.80 4.35
4787 10013 3.003275 GGAACATGATGAAACACACACGT 59.997 43.478 0.00 0.00 0.00 4.49
4788 10014 3.554524 GGAACATGATGAAACACACACG 58.445 45.455 0.00 0.00 0.00 4.49
4789 10015 3.554524 CGGAACATGATGAAACACACAC 58.445 45.455 0.00 0.00 0.00 3.82
4790 10016 2.031245 GCGGAACATGATGAAACACACA 60.031 45.455 0.00 0.00 0.00 3.72
4791 10017 2.584791 GCGGAACATGATGAAACACAC 58.415 47.619 0.00 0.00 0.00 3.82
4792 10018 1.196581 CGCGGAACATGATGAAACACA 59.803 47.619 0.00 0.00 0.00 3.72
4793 10019 1.463056 TCGCGGAACATGATGAAACAC 59.537 47.619 6.13 0.00 0.00 3.32
4794 10020 1.802069 TCGCGGAACATGATGAAACA 58.198 45.000 6.13 0.00 0.00 2.83
4795 10021 2.351418 TCATCGCGGAACATGATGAAAC 59.649 45.455 6.13 0.00 42.79 2.78
4796 10022 2.351418 GTCATCGCGGAACATGATGAAA 59.649 45.455 6.13 0.00 45.62 2.69
4797 10023 1.933181 GTCATCGCGGAACATGATGAA 59.067 47.619 6.13 0.00 45.62 2.57
4798 10024 1.570813 GTCATCGCGGAACATGATGA 58.429 50.000 6.13 2.89 43.27 2.92
4799 10025 0.583438 GGTCATCGCGGAACATGATG 59.417 55.000 6.13 0.00 39.84 3.07
4800 10026 2.992089 GGTCATCGCGGAACATGAT 58.008 52.632 6.13 0.00 31.71 2.45
4801 10027 4.513519 GGTCATCGCGGAACATGA 57.486 55.556 6.13 5.01 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.