Multiple sequence alignment - TraesCS1A01G266000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G266000 chr1A 100.000 4033 0 0 1 4033 461525035 461521003 0.000000e+00 7448.0
1 TraesCS1A01G266000 chr1A 88.166 938 77 14 804 1726 461644158 461643240 0.000000e+00 1086.0
2 TraesCS1A01G266000 chr1A 86.612 732 93 5 2434 3163 461642417 461641689 0.000000e+00 804.0
3 TraesCS1A01G266000 chr1B 93.454 1543 69 19 637 2171 484465595 484464077 0.000000e+00 2261.0
4 TraesCS1A01G266000 chr1B 94.220 865 48 2 2314 3178 484463873 484463011 0.000000e+00 1319.0
5 TraesCS1A01G266000 chr1B 88.507 931 77 12 808 1727 484693047 484692136 0.000000e+00 1099.0
6 TraesCS1A01G266000 chr1B 89.157 747 77 4 2434 3179 484691124 484690381 0.000000e+00 928.0
7 TraesCS1A01G266000 chr1B 83.086 674 62 14 1 648 484467650 484467003 2.100000e-157 566.0
8 TraesCS1A01G266000 chr1B 75.902 610 111 21 1131 1710 664317874 664318477 3.070000e-71 279.0
9 TraesCS1A01G266000 chr1B 88.757 169 14 3 3432 3596 484462774 484462607 6.830000e-48 202.0
10 TraesCS1A01G266000 chr1B 96.639 119 3 1 2176 2294 484463974 484463857 3.180000e-46 196.0
11 TraesCS1A01G266000 chr1D 94.142 1451 52 19 651 2092 362013566 362012140 0.000000e+00 2178.0
12 TraesCS1A01G266000 chr1D 96.078 867 30 3 2314 3180 362010815 362009953 0.000000e+00 1410.0
13 TraesCS1A01G266000 chr1D 88.519 932 77 18 808 1727 362132763 362131850 0.000000e+00 1101.0
14 TraesCS1A01G266000 chr1D 88.043 644 63 11 1 639 362014447 362013813 0.000000e+00 750.0
15 TraesCS1A01G266000 chr1D 90.196 357 34 1 3247 3602 362009953 362009597 7.900000e-127 464.0
16 TraesCS1A01G266000 chr1D 77.687 614 101 22 1127 1710 476872643 476872036 3.860000e-90 342.0
17 TraesCS1A01G266000 chr1D 93.258 89 2 1 2078 2166 362012119 362012035 1.180000e-25 128.0
18 TraesCS1A01G266000 chr4A 96.512 258 6 2 3776 4033 117337348 117337094 1.340000e-114 424.0
19 TraesCS1A01G266000 chr3D 91.923 260 20 1 3772 4031 582912733 582912475 2.960000e-96 363.0
20 TraesCS1A01G266000 chr3D 91.538 260 21 1 3772 4031 581935532 581935790 1.380000e-94 357.0
21 TraesCS1A01G266000 chr3D 91.538 260 21 1 3772 4031 582901827 582901569 1.380000e-94 357.0
22 TraesCS1A01G266000 chr3D 91.538 260 21 1 3772 4031 582925162 582924904 1.380000e-94 357.0
23 TraesCS1A01G266000 chr3D 94.565 92 5 0 1442 1533 326120752 326120661 4.200000e-30 143.0
24 TraesCS1A01G266000 chr5D 91.603 262 20 2 3772 4033 462894640 462894381 1.070000e-95 361.0
25 TraesCS1A01G266000 chrUn 91.538 260 21 1 3772 4031 342087183 342086925 1.380000e-94 357.0
26 TraesCS1A01G266000 chrUn 91.538 260 21 1 3772 4031 348673649 348673907 1.380000e-94 357.0
27 TraesCS1A01G266000 chr2A 91.829 257 20 1 3777 4033 90044623 90044368 1.380000e-94 357.0
28 TraesCS1A01G266000 chr3B 93.478 92 6 0 1442 1533 423497423 423497332 1.950000e-28 137.0
29 TraesCS1A01G266000 chr6B 88.000 50 6 0 3384 3433 435502650 435502699 4.350000e-05 60.2
30 TraesCS1A01G266000 chr6B 100.000 32 0 0 3399 3430 437906811 437906842 4.350000e-05 60.2
31 TraesCS1A01G266000 chr6B 94.444 36 2 0 3401 3436 365598075 365598040 5.630000e-04 56.5
32 TraesCS1A01G266000 chr6B 94.286 35 2 0 3399 3433 622073039 622073073 2.000000e-03 54.7
33 TraesCS1A01G266000 chr4B 94.737 38 2 0 3399 3436 386870292 386870255 4.350000e-05 60.2
34 TraesCS1A01G266000 chr2D 100.000 30 0 0 200 229 77168928 77168899 5.630000e-04 56.5
35 TraesCS1A01G266000 chr3A 100.000 29 0 0 201 229 563001565 563001593 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G266000 chr1A 461521003 461525035 4032 True 7448.0 7448 100.0000 1 4033 1 chr1A.!!$R1 4032
1 TraesCS1A01G266000 chr1A 461641689 461644158 2469 True 945.0 1086 87.3890 804 3163 2 chr1A.!!$R2 2359
2 TraesCS1A01G266000 chr1B 484690381 484693047 2666 True 1013.5 1099 88.8320 808 3179 2 chr1B.!!$R2 2371
3 TraesCS1A01G266000 chr1B 484462607 484467650 5043 True 908.8 2261 91.2312 1 3596 5 chr1B.!!$R1 3595
4 TraesCS1A01G266000 chr1B 664317874 664318477 603 False 279.0 279 75.9020 1131 1710 1 chr1B.!!$F1 579
5 TraesCS1A01G266000 chr1D 362131850 362132763 913 True 1101.0 1101 88.5190 808 1727 1 chr1D.!!$R1 919
6 TraesCS1A01G266000 chr1D 362009597 362014447 4850 True 986.0 2178 92.3434 1 3602 5 chr1D.!!$R3 3601
7 TraesCS1A01G266000 chr1D 476872036 476872643 607 True 342.0 342 77.6870 1127 1710 1 chr1D.!!$R2 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 630 0.248175 AAACGAAACCGACGGCAAAC 60.248 50.000 15.39 2.31 34.93 2.93 F
888 2342 1.334419 CGTCCTATAAGTACACGCCCG 60.334 57.143 0.00 0.00 0.00 6.13 F
911 2365 1.891150 CTGAAGCAAAGAGGCCACAAT 59.109 47.619 5.01 0.00 0.00 2.71 F
1910 3484 1.453762 GGCGACGGTCTAGCTACCAT 61.454 60.000 6.57 0.00 39.71 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 3449 0.106708 TCGCCTTGCTTCAGTTCACT 59.893 50.0 0.00 0.0 0.00 3.41 R
1877 3450 0.235926 GTCGCCTTGCTTCAGTTCAC 59.764 55.0 0.00 0.0 0.00 3.18 R
2477 5571 0.545071 TGGTGATGCTGACCTCCTCA 60.545 55.0 0.00 0.0 34.26 3.86 R
3725 6873 0.389025 CCCAAGTTGACCAACCTTGC 59.611 55.0 3.87 0.0 42.06 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.590195 AAGAAGCTTGTTCGCAGCAG 59.410 50.000 2.10 0.00 0.00 4.24
39 40 2.227388 CAGATGGAGGACTTTGTTGCAC 59.773 50.000 0.00 0.00 0.00 4.57
100 101 2.301870 CCAAGAGTGTTAGTGGCCACTA 59.698 50.000 36.63 36.63 41.80 2.74
170 172 1.466856 AGTTCGGACGTATAGCCACA 58.533 50.000 0.00 0.00 0.00 4.17
185 187 1.474077 GCCACAAGGATCACATGGAAC 59.526 52.381 8.31 0.00 36.89 3.62
244 246 3.754323 CACAACCAAAAATAGTCCGCCTA 59.246 43.478 0.00 0.00 0.00 3.93
271 273 3.124919 ATACCACGTGTAAGGGGCACC 62.125 57.143 15.65 0.00 39.94 5.01
296 298 2.672961 TCTCTCTGTGTTAATGGCGG 57.327 50.000 0.00 0.00 0.00 6.13
297 299 1.207089 TCTCTCTGTGTTAATGGCGGG 59.793 52.381 0.00 0.00 0.00 6.13
329 332 2.858644 TGGGATACACTTGGGGAAGAT 58.141 47.619 0.00 0.00 39.74 2.40
332 335 3.202151 GGGATACACTTGGGGAAGATGAA 59.798 47.826 0.00 0.00 39.74 2.57
333 336 4.200092 GGATACACTTGGGGAAGATGAAC 58.800 47.826 0.00 0.00 0.00 3.18
335 338 2.863809 ACACTTGGGGAAGATGAACAC 58.136 47.619 0.00 0.00 0.00 3.32
336 339 1.806542 CACTTGGGGAAGATGAACACG 59.193 52.381 0.00 0.00 0.00 4.49
337 340 0.804989 CTTGGGGAAGATGAACACGC 59.195 55.000 0.00 0.00 0.00 5.34
338 341 0.953471 TTGGGGAAGATGAACACGCG 60.953 55.000 3.53 3.53 0.00 6.01
339 342 1.079405 GGGGAAGATGAACACGCGA 60.079 57.895 15.93 0.00 0.00 5.87
340 343 0.462047 GGGGAAGATGAACACGCGAT 60.462 55.000 15.93 0.00 0.00 4.58
341 344 1.202486 GGGGAAGATGAACACGCGATA 60.202 52.381 15.93 0.00 0.00 2.92
342 345 2.128035 GGGAAGATGAACACGCGATAG 58.872 52.381 15.93 4.52 0.00 2.08
380 385 3.066190 CCACCGCCACCGAGTCTA 61.066 66.667 0.00 0.00 36.29 2.59
419 448 1.178276 GCTCCCTTCGTTCTCTCTGA 58.822 55.000 0.00 0.00 0.00 3.27
428 457 8.794553 TCCCTTCGTTCTCTCTGAAATATATAC 58.205 37.037 0.00 0.00 36.30 1.47
447 476 2.128290 CTCCATGTGTCACTGGGGCA 62.128 60.000 16.64 0.00 33.13 5.36
460 489 2.124151 GGGCATGTGGTGGGCTAG 60.124 66.667 0.00 0.00 0.00 3.42
461 490 2.679342 GGGCATGTGGTGGGCTAGA 61.679 63.158 0.00 0.00 0.00 2.43
467 496 0.472925 TGTGGTGGGCTAGACCTTGA 60.473 55.000 17.75 0.00 39.10 3.02
482 511 4.841246 AGACCTTGAACTATCACTGGTTCT 59.159 41.667 0.00 2.52 41.87 3.01
515 544 4.149396 GTCGCTAACAAATACGTTCACTGT 59.851 41.667 0.00 0.00 0.00 3.55
522 551 9.525007 CTAACAAATACGTTCACTGTCATTTAC 57.475 33.333 0.00 0.00 0.00 2.01
568 597 2.125552 CGTGGCTCCGATTCTGCA 60.126 61.111 0.00 0.00 0.00 4.41
569 598 1.522355 CGTGGCTCCGATTCTGCAT 60.522 57.895 0.00 0.00 0.00 3.96
573 602 0.942962 GGCTCCGATTCTGCATCAAG 59.057 55.000 0.00 0.00 0.00 3.02
599 628 1.352404 CAAACGAAACCGACGGCAA 59.648 52.632 15.39 0.00 34.93 4.52
601 630 0.248175 AAACGAAACCGACGGCAAAC 60.248 50.000 15.39 2.31 34.93 2.93
610 639 4.887190 ACGGCAAACTGCGGGGTT 62.887 61.111 10.43 0.00 46.21 4.11
642 671 3.357079 CACAGCTGACGGTTGCCC 61.357 66.667 23.35 0.00 0.00 5.36
662 2109 5.122082 TGCCCGTTAGTATTTCCGTAAAAAG 59.878 40.000 0.00 0.00 0.00 2.27
681 2128 5.526506 AAAGAAATTGACTGCTTTGAGCT 57.473 34.783 1.29 0.00 42.97 4.09
694 2141 2.386661 TTGAGCTCGGTGATTCCTTC 57.613 50.000 9.64 0.00 0.00 3.46
723 2173 2.782222 GCCAGTCAGCATGCATGGG 61.782 63.158 27.34 18.94 40.46 4.00
761 2212 7.124448 AGGAATCGTCACTTACTTCTAAGGAAT 59.876 37.037 0.00 0.00 34.62 3.01
763 2214 9.968870 GAATCGTCACTTACTTCTAAGGAATAT 57.031 33.333 0.00 0.00 34.62 1.28
802 2253 5.997384 ACTCCGAGTAAATTTACAGTCCT 57.003 39.130 26.06 8.64 36.12 3.85
847 2299 8.090831 GGGAAGAAATGAAATAATATTGGAGGC 58.909 37.037 0.00 0.00 0.00 4.70
888 2342 1.334419 CGTCCTATAAGTACACGCCCG 60.334 57.143 0.00 0.00 0.00 6.13
911 2365 1.891150 CTGAAGCAAAGAGGCCACAAT 59.109 47.619 5.01 0.00 0.00 2.71
983 2442 2.488545 CGATCGATAAGGTCCCTCGAAT 59.511 50.000 10.26 3.19 43.75 3.34
1311 2781 3.417275 CTACGAGGACCTGCTGGCG 62.417 68.421 9.95 7.64 36.63 5.69
1647 3144 2.040544 CGTGCACCATGGGTTCCTC 61.041 63.158 18.09 0.43 31.02 3.71
1729 3226 2.113131 AAAGTAACGTGCCACAGCGC 62.113 55.000 0.00 0.00 46.36 5.92
1873 3446 2.226437 TGAAGAAGCAAAGCGATTGACC 59.774 45.455 9.15 0.00 41.85 4.02
1876 3449 3.609853 AGAAGCAAAGCGATTGACCATA 58.390 40.909 9.15 0.00 41.85 2.74
1877 3450 3.624861 AGAAGCAAAGCGATTGACCATAG 59.375 43.478 9.15 0.00 41.85 2.23
1878 3451 2.991250 AGCAAAGCGATTGACCATAGT 58.009 42.857 9.15 0.00 41.85 2.12
1879 3452 2.679837 AGCAAAGCGATTGACCATAGTG 59.320 45.455 9.15 0.00 41.85 2.74
1880 3453 2.677836 GCAAAGCGATTGACCATAGTGA 59.322 45.455 9.15 0.00 41.85 3.41
1910 3484 1.453762 GGCGACGGTCTAGCTACCAT 61.454 60.000 6.57 0.00 39.71 3.55
1980 3895 9.911788 AGATAGAAAAGAATGCCTTATCTTGAA 57.088 29.630 0.00 0.00 36.09 2.69
1982 3897 9.692325 ATAGAAAAGAATGCCTTATCTTGAAGT 57.308 29.630 0.00 0.00 36.09 3.01
1983 3898 8.414629 AGAAAAGAATGCCTTATCTTGAAGTT 57.585 30.769 0.00 0.00 36.09 2.66
1984 3899 8.518702 AGAAAAGAATGCCTTATCTTGAAGTTC 58.481 33.333 0.00 0.00 36.09 3.01
1985 3900 7.765695 AAAGAATGCCTTATCTTGAAGTTCA 57.234 32.000 0.08 0.08 36.09 3.18
1986 3901 7.765695 AAGAATGCCTTATCTTGAAGTTCAA 57.234 32.000 17.16 17.16 34.70 2.69
1987 3902 7.824672 AAGAATGCCTTATCTTGAAGTTCAAG 58.175 34.615 31.44 31.44 42.99 3.02
2016 3931 3.489229 CCTCAACTATCGTTCGCTCATGA 60.489 47.826 0.00 0.00 0.00 3.07
2017 3932 4.104696 TCAACTATCGTTCGCTCATGAA 57.895 40.909 0.00 0.00 0.00 2.57
2068 3983 3.097877 TGAGCGCGTCAGATAATTGAT 57.902 42.857 8.43 0.00 0.00 2.57
2167 4117 3.795688 ATTGGATGGGTAGGTGCTATG 57.204 47.619 0.00 0.00 0.00 2.23
2171 4121 1.768870 GATGGGTAGGTGCTATGGTGT 59.231 52.381 0.00 0.00 0.00 4.16
2172 4122 2.553911 TGGGTAGGTGCTATGGTGTA 57.446 50.000 0.00 0.00 0.00 2.90
2173 4123 3.054779 TGGGTAGGTGCTATGGTGTAT 57.945 47.619 0.00 0.00 0.00 2.29
2174 4124 4.201894 TGGGTAGGTGCTATGGTGTATA 57.798 45.455 0.00 0.00 0.00 1.47
2206 5265 3.411446 TGAGAGTGTATGTTTGCCCAAG 58.589 45.455 0.00 0.00 0.00 3.61
2277 5357 6.878317 TCTATAACTTGAGTAGCTGCACATT 58.122 36.000 4.12 0.00 0.00 2.71
2278 5358 7.331026 TCTATAACTTGAGTAGCTGCACATTT 58.669 34.615 4.12 3.53 0.00 2.32
2279 5359 8.474831 TCTATAACTTGAGTAGCTGCACATTTA 58.525 33.333 4.12 5.58 0.00 1.40
2280 5360 5.613358 AACTTGAGTAGCTGCACATTTAC 57.387 39.130 4.12 0.00 0.00 2.01
2281 5361 4.641396 ACTTGAGTAGCTGCACATTTACA 58.359 39.130 4.12 0.00 0.00 2.41
2282 5362 5.248640 ACTTGAGTAGCTGCACATTTACAT 58.751 37.500 4.12 0.00 0.00 2.29
2283 5363 5.707298 ACTTGAGTAGCTGCACATTTACATT 59.293 36.000 4.12 0.00 0.00 2.71
2284 5364 5.801350 TGAGTAGCTGCACATTTACATTC 57.199 39.130 4.12 0.00 0.00 2.67
2285 5365 4.635765 TGAGTAGCTGCACATTTACATTCC 59.364 41.667 4.12 0.00 0.00 3.01
2286 5366 4.588899 AGTAGCTGCACATTTACATTCCA 58.411 39.130 4.12 0.00 0.00 3.53
2287 5367 5.195940 AGTAGCTGCACATTTACATTCCAT 58.804 37.500 4.12 0.00 0.00 3.41
2288 5368 4.380841 AGCTGCACATTTACATTCCATG 57.619 40.909 1.02 0.00 0.00 3.66
2289 5369 2.861935 GCTGCACATTTACATTCCATGC 59.138 45.455 0.00 0.00 0.00 4.06
2290 5370 3.676598 GCTGCACATTTACATTCCATGCA 60.677 43.478 0.00 0.00 39.16 3.96
2291 5371 4.496360 CTGCACATTTACATTCCATGCAA 58.504 39.130 0.00 0.00 40.76 4.08
2292 5372 4.244066 TGCACATTTACATTCCATGCAAC 58.756 39.130 0.00 0.00 38.56 4.17
2293 5373 4.021280 TGCACATTTACATTCCATGCAACT 60.021 37.500 0.00 0.00 38.56 3.16
2294 5374 4.563976 GCACATTTACATTCCATGCAACTC 59.436 41.667 0.00 0.00 0.00 3.01
2295 5375 5.622914 GCACATTTACATTCCATGCAACTCT 60.623 40.000 0.00 0.00 0.00 3.24
2296 5376 6.392354 CACATTTACATTCCATGCAACTCTT 58.608 36.000 0.00 0.00 0.00 2.85
2297 5377 6.869913 CACATTTACATTCCATGCAACTCTTT 59.130 34.615 0.00 0.00 0.00 2.52
2298 5378 7.385752 CACATTTACATTCCATGCAACTCTTTT 59.614 33.333 0.00 0.00 0.00 2.27
2299 5379 7.933033 ACATTTACATTCCATGCAACTCTTTTT 59.067 29.630 0.00 0.00 0.00 1.94
2343 5423 5.716228 TCCATGCAACTTGGTTGATTAGAAT 59.284 36.000 13.63 0.00 45.28 2.40
2378 5458 8.608844 ATTTTTGAGCGTCCTAAGGAATATAG 57.391 34.615 0.00 0.00 31.38 1.31
2432 5526 4.870123 ACCATGCATGTAAACACACAAT 57.130 36.364 24.58 0.00 30.84 2.71
2477 5571 1.478510 CTCGTGGAGCTGTACAAGGAT 59.521 52.381 0.00 0.00 0.00 3.24
2496 5590 0.545071 TGAGGAGGTCAGCATCACCA 60.545 55.000 1.98 0.00 36.23 4.17
2501 5595 1.209019 GAGGTCAGCATCACCATCTGT 59.791 52.381 1.98 0.00 36.23 3.41
2522 5616 2.591429 CACAGCCTTGGTGCGTCA 60.591 61.111 0.00 0.00 34.04 4.35
2615 5709 2.612972 CCCTGTGACTGCTATCGTGTTT 60.613 50.000 0.00 0.00 0.00 2.83
2741 5835 0.460311 CACCTCTGGGATACGTGGAC 59.540 60.000 0.00 0.00 36.25 4.02
3058 6152 1.176527 CACATCGGCCATTGAAAGGT 58.823 50.000 2.24 0.00 0.00 3.50
3059 6153 2.026729 TCACATCGGCCATTGAAAGGTA 60.027 45.455 2.24 0.00 0.00 3.08
3060 6154 2.752354 CACATCGGCCATTGAAAGGTAA 59.248 45.455 2.24 0.00 0.00 2.85
3104 6198 4.232221 CGACATTGTACTCGTTACCAAGT 58.768 43.478 0.00 0.00 0.00 3.16
3193 6288 4.903638 ATGTTTCACGACATTGTACTCG 57.096 40.909 0.00 1.11 36.92 4.18
3194 6289 3.708890 TGTTTCACGACATTGTACTCGT 58.291 40.909 2.35 2.35 43.83 4.18
3195 6290 4.114073 TGTTTCACGACATTGTACTCGTT 58.886 39.130 5.26 0.00 41.13 3.85
3196 6291 5.280164 TGTTTCACGACATTGTACTCGTTA 58.720 37.500 5.26 0.00 41.13 3.18
3197 6292 5.921976 TGTTTCACGACATTGTACTCGTTAT 59.078 36.000 5.26 0.00 41.13 1.89
3198 6293 6.088483 TGTTTCACGACATTGTACTCGTTATC 59.912 38.462 5.26 0.00 41.13 1.75
3199 6294 5.299582 TCACGACATTGTACTCGTTATCA 57.700 39.130 5.26 0.00 41.13 2.15
3200 6295 5.701855 TCACGACATTGTACTCGTTATCAA 58.298 37.500 5.26 0.00 41.13 2.57
3201 6296 5.798434 TCACGACATTGTACTCGTTATCAAG 59.202 40.000 5.26 0.00 41.13 3.02
3202 6297 5.004440 CACGACATTGTACTCGTTATCAAGG 59.996 44.000 5.26 0.00 41.13 3.61
3203 6298 4.503007 CGACATTGTACTCGTTATCAAGGG 59.497 45.833 0.00 0.00 0.00 3.95
3204 6299 5.416271 ACATTGTACTCGTTATCAAGGGT 57.584 39.130 0.00 0.00 0.00 4.34
3205 6300 5.416947 ACATTGTACTCGTTATCAAGGGTC 58.583 41.667 0.00 0.00 0.00 4.46
3206 6301 5.187186 ACATTGTACTCGTTATCAAGGGTCT 59.813 40.000 0.00 0.00 0.00 3.85
3207 6302 6.379133 ACATTGTACTCGTTATCAAGGGTCTA 59.621 38.462 0.00 0.00 0.00 2.59
3208 6303 6.839124 TTGTACTCGTTATCAAGGGTCTAA 57.161 37.500 0.00 0.00 0.00 2.10
3209 6304 6.839124 TGTACTCGTTATCAAGGGTCTAAA 57.161 37.500 0.00 0.00 0.00 1.85
3210 6305 7.414222 TGTACTCGTTATCAAGGGTCTAAAT 57.586 36.000 0.00 0.00 0.00 1.40
3211 6306 8.523915 TGTACTCGTTATCAAGGGTCTAAATA 57.476 34.615 0.00 0.00 0.00 1.40
3212 6307 8.970020 TGTACTCGTTATCAAGGGTCTAAATAA 58.030 33.333 0.00 0.00 0.00 1.40
3213 6308 9.978044 GTACTCGTTATCAAGGGTCTAAATAAT 57.022 33.333 0.00 0.00 0.00 1.28
3214 6309 8.888579 ACTCGTTATCAAGGGTCTAAATAATG 57.111 34.615 0.00 0.00 0.00 1.90
3215 6310 7.931948 ACTCGTTATCAAGGGTCTAAATAATGG 59.068 37.037 0.00 0.00 0.00 3.16
3216 6311 6.708949 TCGTTATCAAGGGTCTAAATAATGGC 59.291 38.462 0.00 0.00 0.00 4.40
3217 6312 6.710744 CGTTATCAAGGGTCTAAATAATGGCT 59.289 38.462 0.00 0.00 0.00 4.75
3218 6313 7.876068 CGTTATCAAGGGTCTAAATAATGGCTA 59.124 37.037 0.00 0.00 0.00 3.93
3219 6314 9.000486 GTTATCAAGGGTCTAAATAATGGCTAC 58.000 37.037 0.00 0.00 0.00 3.58
3220 6315 5.607477 TCAAGGGTCTAAATAATGGCTACG 58.393 41.667 0.00 0.00 0.00 3.51
3221 6316 4.618920 AGGGTCTAAATAATGGCTACGG 57.381 45.455 0.00 0.00 0.00 4.02
3222 6317 3.971971 AGGGTCTAAATAATGGCTACGGT 59.028 43.478 0.00 0.00 0.00 4.83
3223 6318 4.411212 AGGGTCTAAATAATGGCTACGGTT 59.589 41.667 0.00 0.00 0.00 4.44
3224 6319 5.104235 AGGGTCTAAATAATGGCTACGGTTT 60.104 40.000 0.00 0.00 0.00 3.27
3225 6320 5.008316 GGGTCTAAATAATGGCTACGGTTTG 59.992 44.000 0.00 0.00 0.00 2.93
3226 6321 5.587443 GGTCTAAATAATGGCTACGGTTTGT 59.413 40.000 0.00 0.00 0.00 2.83
3227 6322 6.238293 GGTCTAAATAATGGCTACGGTTTGTC 60.238 42.308 0.00 0.00 0.00 3.18
3228 6323 6.314400 GTCTAAATAATGGCTACGGTTTGTCA 59.686 38.462 0.00 0.00 0.00 3.58
3229 6324 5.968528 AAATAATGGCTACGGTTTGTCAA 57.031 34.783 0.00 0.00 0.00 3.18
3230 6325 4.957759 ATAATGGCTACGGTTTGTCAAC 57.042 40.909 0.00 0.00 0.00 3.18
3240 6335 1.995376 GTTTGTCAACCATCCCCAGT 58.005 50.000 0.00 0.00 0.00 4.00
3241 6336 3.149005 GTTTGTCAACCATCCCCAGTA 57.851 47.619 0.00 0.00 0.00 2.74
3242 6337 3.697166 GTTTGTCAACCATCCCCAGTAT 58.303 45.455 0.00 0.00 0.00 2.12
3243 6338 3.644966 TTGTCAACCATCCCCAGTATC 57.355 47.619 0.00 0.00 0.00 2.24
3244 6339 2.845659 TGTCAACCATCCCCAGTATCT 58.154 47.619 0.00 0.00 0.00 1.98
3245 6340 3.189606 TGTCAACCATCCCCAGTATCTT 58.810 45.455 0.00 0.00 0.00 2.40
3254 6349 7.518188 ACCATCCCCAGTATCTTAAAATACAG 58.482 38.462 1.92 0.00 35.06 2.74
3307 6402 4.140924 ACTTTCCCTCAACAATTCCTTCCT 60.141 41.667 0.00 0.00 0.00 3.36
3342 6437 3.361051 CGCGACACGTGAATATGATGAAG 60.361 47.826 25.01 0.00 39.94 3.02
3346 6441 3.873361 ACACGTGAATATGATGAAGCCAG 59.127 43.478 25.01 0.00 0.00 4.85
3355 6450 3.667476 TGAAGCCAGTTCACCCCA 58.333 55.556 0.00 0.00 40.45 4.96
3357 6452 0.482446 TGAAGCCAGTTCACCCCAAT 59.518 50.000 0.00 0.00 40.45 3.16
3361 6456 4.017958 TGAAGCCAGTTCACCCCAATAATA 60.018 41.667 0.00 0.00 40.45 0.98
3362 6457 4.814224 AGCCAGTTCACCCCAATAATAT 57.186 40.909 0.00 0.00 0.00 1.28
3374 6469 6.041865 CACCCCAATAATATCTTTGGCATTCA 59.958 38.462 9.96 0.00 40.89 2.57
3412 6507 7.047891 TGTTGATCATATCCTTGGTGTACTTC 58.952 38.462 0.00 0.00 0.00 3.01
3438 6533 3.139850 GAGAGATGAAGGTGCCATCATG 58.860 50.000 12.90 0.00 42.03 3.07
3453 6597 4.866486 GCCATCATGGACATTTCAAACTTC 59.134 41.667 8.30 0.00 40.96 3.01
3474 6618 6.040504 ACTTCCTTTCCATGAGTTTACCAAAC 59.959 38.462 0.00 0.00 41.69 2.93
3602 6750 2.713167 AGCACTCATACCATGCCCTATT 59.287 45.455 0.00 0.00 40.33 1.73
3603 6751 3.077359 GCACTCATACCATGCCCTATTC 58.923 50.000 0.00 0.00 33.06 1.75
3604 6752 3.496692 GCACTCATACCATGCCCTATTCA 60.497 47.826 0.00 0.00 33.06 2.57
3605 6753 4.717877 CACTCATACCATGCCCTATTCAA 58.282 43.478 0.00 0.00 0.00 2.69
3606 6754 5.132502 CACTCATACCATGCCCTATTCAAA 58.867 41.667 0.00 0.00 0.00 2.69
3607 6755 5.240183 CACTCATACCATGCCCTATTCAAAG 59.760 44.000 0.00 0.00 0.00 2.77
3608 6756 5.132648 ACTCATACCATGCCCTATTCAAAGA 59.867 40.000 0.00 0.00 0.00 2.52
3609 6757 5.624159 TCATACCATGCCCTATTCAAAGAG 58.376 41.667 0.00 0.00 0.00 2.85
3610 6758 2.659428 ACCATGCCCTATTCAAAGAGC 58.341 47.619 0.00 0.00 0.00 4.09
3611 6759 1.959282 CCATGCCCTATTCAAAGAGCC 59.041 52.381 0.00 0.00 0.00 4.70
3612 6760 2.423947 CCATGCCCTATTCAAAGAGCCT 60.424 50.000 0.00 0.00 0.00 4.58
3613 6761 3.294214 CATGCCCTATTCAAAGAGCCTT 58.706 45.455 0.00 0.00 0.00 4.35
3614 6762 2.726821 TGCCCTATTCAAAGAGCCTTG 58.273 47.619 0.00 0.00 0.00 3.61
3615 6763 2.041620 TGCCCTATTCAAAGAGCCTTGT 59.958 45.455 0.00 0.00 0.00 3.16
3616 6764 2.424956 GCCCTATTCAAAGAGCCTTGTG 59.575 50.000 0.00 0.00 0.00 3.33
3617 6765 3.873801 GCCCTATTCAAAGAGCCTTGTGA 60.874 47.826 0.00 0.00 0.00 3.58
3618 6766 4.335416 CCCTATTCAAAGAGCCTTGTGAA 58.665 43.478 11.18 11.18 34.68 3.18
3619 6767 4.397417 CCCTATTCAAAGAGCCTTGTGAAG 59.603 45.833 12.81 0.00 33.74 3.02
3620 6768 5.006386 CCTATTCAAAGAGCCTTGTGAAGT 58.994 41.667 12.81 7.92 33.74 3.01
3621 6769 5.474876 CCTATTCAAAGAGCCTTGTGAAGTT 59.525 40.000 12.81 0.00 33.74 2.66
3622 6770 5.859205 ATTCAAAGAGCCTTGTGAAGTTT 57.141 34.783 12.81 0.00 33.74 2.66
3623 6771 6.959639 ATTCAAAGAGCCTTGTGAAGTTTA 57.040 33.333 12.81 0.00 33.74 2.01
3624 6772 5.751243 TCAAAGAGCCTTGTGAAGTTTAC 57.249 39.130 0.00 0.00 0.00 2.01
3625 6773 4.578928 TCAAAGAGCCTTGTGAAGTTTACC 59.421 41.667 0.00 0.00 0.00 2.85
3626 6774 3.141767 AGAGCCTTGTGAAGTTTACCC 57.858 47.619 0.00 0.00 0.00 3.69
3627 6775 2.160205 GAGCCTTGTGAAGTTTACCCC 58.840 52.381 0.00 0.00 0.00 4.95
3628 6776 1.497286 AGCCTTGTGAAGTTTACCCCA 59.503 47.619 0.00 0.00 0.00 4.96
3629 6777 2.091555 AGCCTTGTGAAGTTTACCCCAA 60.092 45.455 0.00 0.00 0.00 4.12
3630 6778 2.897326 GCCTTGTGAAGTTTACCCCAAT 59.103 45.455 0.00 0.00 0.00 3.16
3631 6779 4.083565 GCCTTGTGAAGTTTACCCCAATA 58.916 43.478 0.00 0.00 0.00 1.90
3632 6780 4.525100 GCCTTGTGAAGTTTACCCCAATAA 59.475 41.667 0.00 0.00 0.00 1.40
3633 6781 5.186992 GCCTTGTGAAGTTTACCCCAATAAT 59.813 40.000 0.00 0.00 0.00 1.28
3634 6782 6.630071 CCTTGTGAAGTTTACCCCAATAATG 58.370 40.000 0.00 0.00 0.00 1.90
3635 6783 6.210584 CCTTGTGAAGTTTACCCCAATAATGT 59.789 38.462 0.00 0.00 0.00 2.71
3636 6784 6.827586 TGTGAAGTTTACCCCAATAATGTC 57.172 37.500 0.00 0.00 0.00 3.06
3637 6785 5.413213 TGTGAAGTTTACCCCAATAATGTCG 59.587 40.000 0.00 0.00 0.00 4.35
3638 6786 5.644636 GTGAAGTTTACCCCAATAATGTCGA 59.355 40.000 0.00 0.00 0.00 4.20
3639 6787 5.878116 TGAAGTTTACCCCAATAATGTCGAG 59.122 40.000 0.00 0.00 0.00 4.04
3640 6788 4.777463 AGTTTACCCCAATAATGTCGAGG 58.223 43.478 0.00 0.00 0.00 4.63
3641 6789 3.849563 TTACCCCAATAATGTCGAGGG 57.150 47.619 0.77 0.77 40.58 4.30
3645 6793 2.572290 CCCAATAATGTCGAGGGGAAC 58.428 52.381 0.00 0.00 37.80 3.62
3646 6794 2.172717 CCCAATAATGTCGAGGGGAACT 59.827 50.000 0.00 0.00 37.80 3.01
3647 6795 3.371595 CCCAATAATGTCGAGGGGAACTT 60.372 47.826 0.00 0.00 37.80 2.66
3648 6796 4.270008 CCAATAATGTCGAGGGGAACTTT 58.730 43.478 0.00 0.00 0.00 2.66
3649 6797 4.705023 CCAATAATGTCGAGGGGAACTTTT 59.295 41.667 0.00 0.00 0.00 2.27
3650 6798 5.185056 CCAATAATGTCGAGGGGAACTTTTT 59.815 40.000 0.00 0.00 0.00 1.94
3701 6849 5.941948 AAAGTTCCATGAGTTTAAGTCCG 57.058 39.130 0.00 0.00 0.00 4.79
3702 6850 4.618920 AGTTCCATGAGTTTAAGTCCGT 57.381 40.909 0.00 0.00 0.00 4.69
3703 6851 5.733620 AGTTCCATGAGTTTAAGTCCGTA 57.266 39.130 0.00 0.00 0.00 4.02
3704 6852 6.105397 AGTTCCATGAGTTTAAGTCCGTAA 57.895 37.500 0.00 0.00 0.00 3.18
3705 6853 6.527423 AGTTCCATGAGTTTAAGTCCGTAAA 58.473 36.000 0.00 0.00 0.00 2.01
3706 6854 6.649557 AGTTCCATGAGTTTAAGTCCGTAAAG 59.350 38.462 0.00 0.00 0.00 1.85
3707 6855 6.349243 TCCATGAGTTTAAGTCCGTAAAGA 57.651 37.500 0.00 0.00 0.00 2.52
3708 6856 6.395629 TCCATGAGTTTAAGTCCGTAAAGAG 58.604 40.000 0.00 0.00 0.00 2.85
3709 6857 5.063564 CCATGAGTTTAAGTCCGTAAAGAGC 59.936 44.000 0.00 0.00 0.00 4.09
3710 6858 4.563061 TGAGTTTAAGTCCGTAAAGAGCC 58.437 43.478 0.00 0.00 0.00 4.70
3711 6859 4.282703 TGAGTTTAAGTCCGTAAAGAGCCT 59.717 41.667 0.00 0.00 0.00 4.58
3712 6860 5.221581 TGAGTTTAAGTCCGTAAAGAGCCTT 60.222 40.000 0.00 0.00 0.00 4.35
3713 6861 4.995487 AGTTTAAGTCCGTAAAGAGCCTTG 59.005 41.667 0.00 0.00 0.00 3.61
3714 6862 4.612264 TTAAGTCCGTAAAGAGCCTTGT 57.388 40.909 0.00 0.00 0.00 3.16
3715 6863 2.457366 AGTCCGTAAAGAGCCTTGTG 57.543 50.000 0.00 0.00 0.00 3.33
3716 6864 1.968493 AGTCCGTAAAGAGCCTTGTGA 59.032 47.619 0.00 0.00 0.00 3.58
3717 6865 2.367567 AGTCCGTAAAGAGCCTTGTGAA 59.632 45.455 0.00 0.00 0.00 3.18
3718 6866 2.737252 GTCCGTAAAGAGCCTTGTGAAG 59.263 50.000 0.00 0.00 0.00 3.02
3719 6867 2.367567 TCCGTAAAGAGCCTTGTGAAGT 59.632 45.455 0.00 0.00 0.00 3.01
3720 6868 3.139077 CCGTAAAGAGCCTTGTGAAGTT 58.861 45.455 0.00 0.00 0.00 2.66
3721 6869 3.564225 CCGTAAAGAGCCTTGTGAAGTTT 59.436 43.478 0.00 0.00 0.00 2.66
3722 6870 4.753107 CCGTAAAGAGCCTTGTGAAGTTTA 59.247 41.667 0.00 0.00 0.00 2.01
3723 6871 5.411669 CCGTAAAGAGCCTTGTGAAGTTTAT 59.588 40.000 0.00 0.00 0.00 1.40
3724 6872 6.592607 CCGTAAAGAGCCTTGTGAAGTTTATA 59.407 38.462 0.00 0.00 0.00 0.98
3725 6873 7.201530 CCGTAAAGAGCCTTGTGAAGTTTATAG 60.202 40.741 0.00 0.00 0.00 1.31
3726 6874 6.502136 AAAGAGCCTTGTGAAGTTTATAGC 57.498 37.500 0.00 0.00 0.00 2.97
3727 6875 5.165961 AGAGCCTTGTGAAGTTTATAGCA 57.834 39.130 0.00 0.00 0.00 3.49
3728 6876 5.560724 AGAGCCTTGTGAAGTTTATAGCAA 58.439 37.500 0.00 0.00 0.00 3.91
3729 6877 5.645497 AGAGCCTTGTGAAGTTTATAGCAAG 59.355 40.000 0.00 0.00 34.74 4.01
3732 6880 6.575162 CCTTGTGAAGTTTATAGCAAGGTT 57.425 37.500 11.65 0.00 44.53 3.50
3733 6881 6.381801 CCTTGTGAAGTTTATAGCAAGGTTG 58.618 40.000 11.65 0.00 44.53 3.77
3734 6882 5.957842 TGTGAAGTTTATAGCAAGGTTGG 57.042 39.130 0.00 0.00 0.00 3.77
3735 6883 5.381757 TGTGAAGTTTATAGCAAGGTTGGT 58.618 37.500 0.00 0.00 42.29 3.67
3736 6884 5.472137 TGTGAAGTTTATAGCAAGGTTGGTC 59.528 40.000 0.00 0.00 39.88 4.02
3737 6885 5.472137 GTGAAGTTTATAGCAAGGTTGGTCA 59.528 40.000 0.00 0.00 39.88 4.02
3738 6886 6.016610 GTGAAGTTTATAGCAAGGTTGGTCAA 60.017 38.462 0.00 0.00 39.88 3.18
3739 6887 5.959618 AGTTTATAGCAAGGTTGGTCAAC 57.040 39.130 5.35 5.35 39.88 3.18
3740 6888 5.631119 AGTTTATAGCAAGGTTGGTCAACT 58.369 37.500 12.75 3.57 40.94 3.16
3741 6889 6.068670 AGTTTATAGCAAGGTTGGTCAACTT 58.931 36.000 12.75 3.43 40.94 2.66
3742 6890 5.957842 TTATAGCAAGGTTGGTCAACTTG 57.042 39.130 12.75 14.21 40.94 3.16
3743 6891 1.402787 AGCAAGGTTGGTCAACTTGG 58.597 50.000 12.75 5.09 40.94 3.61
3744 6892 0.389025 GCAAGGTTGGTCAACTTGGG 59.611 55.000 12.75 4.28 40.94 4.12
3745 6893 2.026905 GCAAGGTTGGTCAACTTGGGA 61.027 52.381 12.75 0.00 40.94 4.37
3746 6894 1.956477 CAAGGTTGGTCAACTTGGGAG 59.044 52.381 12.75 0.00 40.94 4.30
3747 6895 1.222567 AGGTTGGTCAACTTGGGAGT 58.777 50.000 12.75 0.00 40.94 3.85
3748 6896 1.569072 AGGTTGGTCAACTTGGGAGTT 59.431 47.619 12.75 0.00 46.85 3.01
3749 6897 2.024369 AGGTTGGTCAACTTGGGAGTTT 60.024 45.455 12.75 0.00 43.48 2.66
3750 6898 2.764010 GGTTGGTCAACTTGGGAGTTTT 59.236 45.455 12.75 0.00 43.48 2.43
3751 6899 3.181479 GGTTGGTCAACTTGGGAGTTTTC 60.181 47.826 12.75 0.00 43.48 2.29
3752 6900 3.374042 TGGTCAACTTGGGAGTTTTCA 57.626 42.857 0.00 0.00 43.48 2.69
3753 6901 3.702792 TGGTCAACTTGGGAGTTTTCAA 58.297 40.909 0.00 0.00 43.48 2.69
3754 6902 4.090090 TGGTCAACTTGGGAGTTTTCAAA 58.910 39.130 0.00 0.00 43.48 2.69
3755 6903 4.528596 TGGTCAACTTGGGAGTTTTCAAAA 59.471 37.500 0.00 0.00 43.48 2.44
3756 6904 4.868171 GGTCAACTTGGGAGTTTTCAAAAC 59.132 41.667 4.72 4.72 43.48 2.43
3757 6905 5.337250 GGTCAACTTGGGAGTTTTCAAAACT 60.337 40.000 15.62 15.62 43.48 2.66
3758 6906 6.127563 GGTCAACTTGGGAGTTTTCAAAACTA 60.128 38.462 15.66 0.00 43.48 2.24
3759 6907 6.972901 GTCAACTTGGGAGTTTTCAAAACTAG 59.027 38.462 15.66 11.53 43.48 2.57
3760 6908 6.096282 TCAACTTGGGAGTTTTCAAAACTAGG 59.904 38.462 15.66 3.91 43.48 3.02
3761 6909 5.762279 ACTTGGGAGTTTTCAAAACTAGGA 58.238 37.500 15.66 0.00 29.87 2.94
3762 6910 5.828328 ACTTGGGAGTTTTCAAAACTAGGAG 59.172 40.000 15.66 12.79 29.87 3.69
3763 6911 4.725490 TGGGAGTTTTCAAAACTAGGAGG 58.275 43.478 15.66 0.00 0.00 4.30
3764 6912 4.167307 TGGGAGTTTTCAAAACTAGGAGGT 59.833 41.667 15.66 0.00 0.00 3.85
3765 6913 5.138276 GGGAGTTTTCAAAACTAGGAGGTT 58.862 41.667 15.66 0.00 0.00 3.50
3766 6914 5.009710 GGGAGTTTTCAAAACTAGGAGGTTG 59.990 44.000 15.66 0.00 0.00 3.77
3767 6915 5.593095 GGAGTTTTCAAAACTAGGAGGTTGT 59.407 40.000 15.66 0.00 0.00 3.32
3768 6916 6.096423 GGAGTTTTCAAAACTAGGAGGTTGTT 59.904 38.462 15.66 0.00 0.00 2.83
3769 6917 7.363530 GGAGTTTTCAAAACTAGGAGGTTGTTT 60.364 37.037 15.66 0.00 35.71 2.83
3770 6918 8.584063 AGTTTTCAAAACTAGGAGGTTGTTTA 57.416 30.769 14.11 0.00 34.09 2.01
3771 6919 9.027202 AGTTTTCAAAACTAGGAGGTTGTTTAA 57.973 29.630 14.11 0.00 34.09 1.52
3772 6920 9.811995 GTTTTCAAAACTAGGAGGTTGTTTAAT 57.188 29.630 5.71 0.00 34.09 1.40
3775 6923 9.810545 TTCAAAACTAGGAGGTTGTTTAATTTG 57.189 29.630 0.00 0.00 34.09 2.32
3776 6924 9.191479 TCAAAACTAGGAGGTTGTTTAATTTGA 57.809 29.630 0.00 0.00 34.09 2.69
3777 6925 9.244799 CAAAACTAGGAGGTTGTTTAATTTGAC 57.755 33.333 0.00 0.00 34.09 3.18
3778 6926 8.762481 AAACTAGGAGGTTGTTTAATTTGACT 57.238 30.769 0.00 0.00 32.92 3.41
3779 6927 8.762481 AACTAGGAGGTTGTTTAATTTGACTT 57.238 30.769 0.00 0.00 0.00 3.01
3780 6928 8.392372 ACTAGGAGGTTGTTTAATTTGACTTC 57.608 34.615 0.00 0.00 0.00 3.01
3781 6929 8.218488 ACTAGGAGGTTGTTTAATTTGACTTCT 58.782 33.333 0.00 0.00 0.00 2.85
3782 6930 9.720769 CTAGGAGGTTGTTTAATTTGACTTCTA 57.279 33.333 0.00 0.00 0.00 2.10
3783 6931 8.392372 AGGAGGTTGTTTAATTTGACTTCTAC 57.608 34.615 0.00 0.00 0.00 2.59
3784 6932 8.218488 AGGAGGTTGTTTAATTTGACTTCTACT 58.782 33.333 0.00 0.00 0.00 2.57
3785 6933 8.847196 GGAGGTTGTTTAATTTGACTTCTACTT 58.153 33.333 0.00 0.00 0.00 2.24
3786 6934 9.880064 GAGGTTGTTTAATTTGACTTCTACTTC 57.120 33.333 0.00 0.00 0.00 3.01
3787 6935 9.403583 AGGTTGTTTAATTTGACTTCTACTTCA 57.596 29.630 0.00 0.00 0.00 3.02
3788 6936 9.665264 GGTTGTTTAATTTGACTTCTACTTCAG 57.335 33.333 0.00 0.00 0.00 3.02
3814 6962 1.530323 CCCCCTAAACACAAGAACGG 58.470 55.000 0.00 0.00 0.00 4.44
3815 6963 1.202842 CCCCCTAAACACAAGAACGGT 60.203 52.381 0.00 0.00 0.00 4.83
3816 6964 2.578786 CCCCTAAACACAAGAACGGTT 58.421 47.619 0.00 0.00 0.00 4.44
3817 6965 2.551032 CCCCTAAACACAAGAACGGTTC 59.449 50.000 12.91 12.91 0.00 3.62
3818 6966 3.207778 CCCTAAACACAAGAACGGTTCA 58.792 45.455 21.86 0.00 0.00 3.18
3819 6967 3.628487 CCCTAAACACAAGAACGGTTCAA 59.372 43.478 21.86 0.00 0.00 2.69
3820 6968 4.096682 CCCTAAACACAAGAACGGTTCAAA 59.903 41.667 21.86 0.00 0.00 2.69
3821 6969 5.221165 CCCTAAACACAAGAACGGTTCAAAT 60.221 40.000 21.86 5.91 0.00 2.32
3822 6970 6.270064 CCTAAACACAAGAACGGTTCAAATT 58.730 36.000 21.86 5.90 0.00 1.82
3823 6971 7.419204 CCTAAACACAAGAACGGTTCAAATTA 58.581 34.615 21.86 10.89 0.00 1.40
3824 6972 7.589954 CCTAAACACAAGAACGGTTCAAATTAG 59.410 37.037 21.86 17.38 0.00 1.73
3825 6973 4.855531 ACACAAGAACGGTTCAAATTAGC 58.144 39.130 21.86 0.00 0.00 3.09
3826 6974 4.226761 CACAAGAACGGTTCAAATTAGCC 58.773 43.478 21.86 0.00 0.00 3.93
3827 6975 3.254903 ACAAGAACGGTTCAAATTAGCCC 59.745 43.478 21.86 0.00 0.00 5.19
3828 6976 3.149005 AGAACGGTTCAAATTAGCCCA 57.851 42.857 21.86 0.00 0.00 5.36
3829 6977 3.697166 AGAACGGTTCAAATTAGCCCAT 58.303 40.909 21.86 0.00 0.00 4.00
3830 6978 4.850680 AGAACGGTTCAAATTAGCCCATA 58.149 39.130 21.86 0.00 0.00 2.74
3831 6979 4.638865 AGAACGGTTCAAATTAGCCCATAC 59.361 41.667 21.86 0.00 0.00 2.39
3832 6980 3.284617 ACGGTTCAAATTAGCCCATACC 58.715 45.455 0.00 0.00 0.00 2.73
3833 6981 3.053917 ACGGTTCAAATTAGCCCATACCT 60.054 43.478 0.00 0.00 0.00 3.08
3834 6982 3.564225 CGGTTCAAATTAGCCCATACCTC 59.436 47.826 0.00 0.00 0.00 3.85
3835 6983 4.686122 CGGTTCAAATTAGCCCATACCTCT 60.686 45.833 0.00 0.00 0.00 3.69
3836 6984 5.201243 GGTTCAAATTAGCCCATACCTCTT 58.799 41.667 0.00 0.00 0.00 2.85
3837 6985 5.299531 GGTTCAAATTAGCCCATACCTCTTC 59.700 44.000 0.00 0.00 0.00 2.87
3838 6986 5.708736 TCAAATTAGCCCATACCTCTTCA 57.291 39.130 0.00 0.00 0.00 3.02
3839 6987 6.266131 TCAAATTAGCCCATACCTCTTCAT 57.734 37.500 0.00 0.00 0.00 2.57
3840 6988 7.387265 TCAAATTAGCCCATACCTCTTCATA 57.613 36.000 0.00 0.00 0.00 2.15
3841 6989 7.811282 TCAAATTAGCCCATACCTCTTCATAA 58.189 34.615 0.00 0.00 0.00 1.90
3842 6990 8.448008 TCAAATTAGCCCATACCTCTTCATAAT 58.552 33.333 0.00 0.00 0.00 1.28
3843 6991 9.739276 CAAATTAGCCCATACCTCTTCATAATA 57.261 33.333 0.00 0.00 0.00 0.98
3846 6994 9.965902 ATTAGCCCATACCTCTTCATAATAAAG 57.034 33.333 0.00 0.00 0.00 1.85
3847 6995 6.784031 AGCCCATACCTCTTCATAATAAAGG 58.216 40.000 0.00 0.00 0.00 3.11
3848 6996 6.562608 AGCCCATACCTCTTCATAATAAAGGA 59.437 38.462 0.00 0.00 0.00 3.36
3849 6997 6.655425 GCCCATACCTCTTCATAATAAAGGAC 59.345 42.308 0.00 0.00 0.00 3.85
3850 6998 7.691791 GCCCATACCTCTTCATAATAAAGGACA 60.692 40.741 0.00 0.00 0.00 4.02
3851 6999 8.386264 CCCATACCTCTTCATAATAAAGGACAT 58.614 37.037 0.00 0.00 0.00 3.06
3852 7000 9.224267 CCATACCTCTTCATAATAAAGGACATG 57.776 37.037 0.00 0.00 0.00 3.21
3855 7003 8.915057 ACCTCTTCATAATAAAGGACATGATG 57.085 34.615 0.00 0.00 0.00 3.07
3856 7004 7.941238 ACCTCTTCATAATAAAGGACATGATGG 59.059 37.037 0.00 0.00 0.00 3.51
3857 7005 7.941238 CCTCTTCATAATAAAGGACATGATGGT 59.059 37.037 0.00 0.00 0.00 3.55
3858 7006 8.908786 TCTTCATAATAAAGGACATGATGGTC 57.091 34.615 0.00 0.00 37.06 4.02
3859 7007 8.493607 TCTTCATAATAAAGGACATGATGGTCA 58.506 33.333 0.00 0.00 39.59 4.02
3860 7008 9.293404 CTTCATAATAAAGGACATGATGGTCAT 57.707 33.333 0.00 0.00 39.59 3.06
3867 7015 7.722949 AAAGGACATGATGGTCATATTTTGT 57.277 32.000 0.00 0.00 39.59 2.83
3868 7016 7.722949 AAGGACATGATGGTCATATTTTGTT 57.277 32.000 0.00 0.00 39.59 2.83
3869 7017 7.104043 AGGACATGATGGTCATATTTTGTTG 57.896 36.000 0.00 0.00 39.59 3.33
3870 7018 6.664816 AGGACATGATGGTCATATTTTGTTGT 59.335 34.615 0.00 0.00 39.59 3.32
3871 7019 6.753279 GGACATGATGGTCATATTTTGTTGTG 59.247 38.462 0.00 0.00 39.59 3.33
3872 7020 7.230849 ACATGATGGTCATATTTTGTTGTGT 57.769 32.000 0.00 0.00 34.28 3.72
3873 7021 8.347004 ACATGATGGTCATATTTTGTTGTGTA 57.653 30.769 0.00 0.00 34.28 2.90
3874 7022 8.970020 ACATGATGGTCATATTTTGTTGTGTAT 58.030 29.630 0.00 0.00 34.28 2.29
3875 7023 9.240159 CATGATGGTCATATTTTGTTGTGTATG 57.760 33.333 0.00 0.00 34.28 2.39
3876 7024 8.347004 TGATGGTCATATTTTGTTGTGTATGT 57.653 30.769 0.00 0.00 0.00 2.29
3877 7025 8.801299 TGATGGTCATATTTTGTTGTGTATGTT 58.199 29.630 0.00 0.00 0.00 2.71
3878 7026 9.638239 GATGGTCATATTTTGTTGTGTATGTTT 57.362 29.630 0.00 0.00 0.00 2.83
3879 7027 9.995003 ATGGTCATATTTTGTTGTGTATGTTTT 57.005 25.926 0.00 0.00 0.00 2.43
3880 7028 9.823647 TGGTCATATTTTGTTGTGTATGTTTTT 57.176 25.926 0.00 0.00 0.00 1.94
3916 7064 6.494893 TCCATTTGATTTATACGCATAGGC 57.505 37.500 0.00 0.00 0.00 3.93
3917 7065 5.414454 TCCATTTGATTTATACGCATAGGCC 59.586 40.000 0.00 0.00 36.38 5.19
3918 7066 5.323900 CATTTGATTTATACGCATAGGCCG 58.676 41.667 0.00 0.00 36.38 6.13
3919 7067 3.671008 TGATTTATACGCATAGGCCGT 57.329 42.857 0.00 0.00 36.38 5.68
3920 7068 4.787260 TGATTTATACGCATAGGCCGTA 57.213 40.909 0.00 6.55 36.38 4.02
3921 7069 4.487948 TGATTTATACGCATAGGCCGTAC 58.512 43.478 0.00 0.00 36.38 3.67
3922 7070 4.022155 TGATTTATACGCATAGGCCGTACA 60.022 41.667 0.00 0.00 36.38 2.90
3923 7071 2.995466 TATACGCATAGGCCGTACAC 57.005 50.000 0.00 0.00 36.38 2.90
3924 7072 1.325355 ATACGCATAGGCCGTACACT 58.675 50.000 0.00 0.00 36.38 3.55
3925 7073 1.105457 TACGCATAGGCCGTACACTT 58.895 50.000 0.00 0.00 36.38 3.16
3926 7074 0.459585 ACGCATAGGCCGTACACTTG 60.460 55.000 0.00 0.00 36.38 3.16
3927 7075 1.762222 CGCATAGGCCGTACACTTGC 61.762 60.000 0.00 0.00 36.38 4.01
3928 7076 1.436983 GCATAGGCCGTACACTTGCC 61.437 60.000 0.00 4.93 45.70 4.52
3929 7077 0.814010 CATAGGCCGTACACTTGCCC 60.814 60.000 0.00 0.00 46.55 5.36
3930 7078 2.306255 ATAGGCCGTACACTTGCCCG 62.306 60.000 0.00 0.00 46.55 6.13
3933 7081 3.118454 CCGTACACTTGCCCGCTG 61.118 66.667 0.00 0.00 0.00 5.18
3934 7082 3.118454 CGTACACTTGCCCGCTGG 61.118 66.667 0.00 0.00 0.00 4.85
3951 7099 4.666105 GGCCTTCCCAACCATCTC 57.334 61.111 0.00 0.00 0.00 2.75
3952 7100 2.002625 GGCCTTCCCAACCATCTCT 58.997 57.895 0.00 0.00 0.00 3.10
3953 7101 0.332972 GGCCTTCCCAACCATCTCTT 59.667 55.000 0.00 0.00 0.00 2.85
3954 7102 1.272704 GGCCTTCCCAACCATCTCTTT 60.273 52.381 0.00 0.00 0.00 2.52
3955 7103 2.025321 GGCCTTCCCAACCATCTCTTTA 60.025 50.000 0.00 0.00 0.00 1.85
3956 7104 3.563479 GGCCTTCCCAACCATCTCTTTAA 60.563 47.826 0.00 0.00 0.00 1.52
3957 7105 4.086457 GCCTTCCCAACCATCTCTTTAAA 58.914 43.478 0.00 0.00 0.00 1.52
3958 7106 4.711846 GCCTTCCCAACCATCTCTTTAAAT 59.288 41.667 0.00 0.00 0.00 1.40
3959 7107 5.163509 GCCTTCCCAACCATCTCTTTAAATC 60.164 44.000 0.00 0.00 0.00 2.17
3960 7108 5.066505 CCTTCCCAACCATCTCTTTAAATCG 59.933 44.000 0.00 0.00 0.00 3.34
3961 7109 3.945285 TCCCAACCATCTCTTTAAATCGC 59.055 43.478 0.00 0.00 0.00 4.58
3962 7110 3.694072 CCCAACCATCTCTTTAAATCGCA 59.306 43.478 0.00 0.00 0.00 5.10
3963 7111 4.157656 CCCAACCATCTCTTTAAATCGCAA 59.842 41.667 0.00 0.00 0.00 4.85
3964 7112 5.336372 CCCAACCATCTCTTTAAATCGCAAA 60.336 40.000 0.00 0.00 0.00 3.68
3965 7113 6.155827 CCAACCATCTCTTTAAATCGCAAAA 58.844 36.000 0.00 0.00 0.00 2.44
3966 7114 6.644592 CCAACCATCTCTTTAAATCGCAAAAA 59.355 34.615 0.00 0.00 0.00 1.94
3988 7136 5.490139 AAATATGAGTGTGCCAAGATTCG 57.510 39.130 0.00 0.00 0.00 3.34
3989 7137 2.768253 ATGAGTGTGCCAAGATTCGA 57.232 45.000 0.00 0.00 0.00 3.71
3990 7138 2.084610 TGAGTGTGCCAAGATTCGAG 57.915 50.000 0.00 0.00 0.00 4.04
3991 7139 1.618343 TGAGTGTGCCAAGATTCGAGA 59.382 47.619 0.00 0.00 0.00 4.04
3992 7140 1.996191 GAGTGTGCCAAGATTCGAGAC 59.004 52.381 0.00 0.00 0.00 3.36
3993 7141 1.344438 AGTGTGCCAAGATTCGAGACA 59.656 47.619 0.00 0.00 0.00 3.41
3994 7142 1.728971 GTGTGCCAAGATTCGAGACAG 59.271 52.381 0.00 0.00 0.00 3.51
3995 7143 1.338105 TGTGCCAAGATTCGAGACAGG 60.338 52.381 0.00 0.00 0.00 4.00
3996 7144 1.066858 GTGCCAAGATTCGAGACAGGA 60.067 52.381 0.00 0.00 0.00 3.86
3997 7145 1.623311 TGCCAAGATTCGAGACAGGAA 59.377 47.619 0.00 0.00 0.00 3.36
3998 7146 2.003301 GCCAAGATTCGAGACAGGAAC 58.997 52.381 0.00 0.00 0.00 3.62
3999 7147 2.354203 GCCAAGATTCGAGACAGGAACT 60.354 50.000 0.00 0.00 43.88 3.01
4000 7148 3.866449 GCCAAGATTCGAGACAGGAACTT 60.866 47.826 0.00 0.00 34.60 2.66
4001 7149 3.929610 CCAAGATTCGAGACAGGAACTTC 59.070 47.826 0.00 0.00 34.60 3.01
4002 7150 4.322349 CCAAGATTCGAGACAGGAACTTCT 60.322 45.833 0.00 0.00 34.60 2.85
4003 7151 4.448537 AGATTCGAGACAGGAACTTCTG 57.551 45.455 0.00 0.00 34.60 3.02
4004 7152 3.194542 AGATTCGAGACAGGAACTTCTGG 59.805 47.826 0.00 0.00 38.98 3.86
4005 7153 1.996798 TCGAGACAGGAACTTCTGGT 58.003 50.000 0.00 0.00 38.98 4.00
4006 7154 2.317040 TCGAGACAGGAACTTCTGGTT 58.683 47.619 0.00 0.00 41.40 3.67
4017 7165 3.626028 ACTTCTGGTTCAAAATGCGAC 57.374 42.857 0.00 0.00 0.00 5.19
4018 7166 2.948979 ACTTCTGGTTCAAAATGCGACA 59.051 40.909 0.00 0.00 0.00 4.35
4019 7167 3.243068 ACTTCTGGTTCAAAATGCGACAC 60.243 43.478 0.00 0.00 0.00 3.67
4020 7168 2.571212 TCTGGTTCAAAATGCGACACT 58.429 42.857 0.00 0.00 0.00 3.55
4021 7169 3.734463 TCTGGTTCAAAATGCGACACTA 58.266 40.909 0.00 0.00 0.00 2.74
4022 7170 4.323417 TCTGGTTCAAAATGCGACACTAT 58.677 39.130 0.00 0.00 0.00 2.12
4023 7171 5.483811 TCTGGTTCAAAATGCGACACTATA 58.516 37.500 0.00 0.00 0.00 1.31
4024 7172 5.935206 TCTGGTTCAAAATGCGACACTATAA 59.065 36.000 0.00 0.00 0.00 0.98
4025 7173 5.933790 TGGTTCAAAATGCGACACTATAAC 58.066 37.500 0.00 0.00 0.00 1.89
4026 7174 5.106475 TGGTTCAAAATGCGACACTATAACC 60.106 40.000 0.00 0.00 34.58 2.85
4027 7175 5.106475 GGTTCAAAATGCGACACTATAACCA 60.106 40.000 0.00 0.00 34.25 3.67
4028 7176 6.375377 GTTCAAAATGCGACACTATAACCAA 58.625 36.000 0.00 0.00 0.00 3.67
4029 7177 5.933790 TCAAAATGCGACACTATAACCAAC 58.066 37.500 0.00 0.00 0.00 3.77
4030 7178 5.703592 TCAAAATGCGACACTATAACCAACT 59.296 36.000 0.00 0.00 0.00 3.16
4031 7179 6.205853 TCAAAATGCGACACTATAACCAACTT 59.794 34.615 0.00 0.00 0.00 2.66
4032 7180 5.545658 AATGCGACACTATAACCAACTTG 57.454 39.130 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.541588 GGTGCAACAAAGTCCTCCATC 59.458 52.381 0.00 0.00 39.98 3.51
39 40 3.682644 TTGGAGCATGGGCCATGGG 62.683 63.158 39.54 21.88 41.64 4.00
105 106 3.064820 GCTCCTTCGAGTTGTTTTGAACA 59.935 43.478 0.00 0.00 38.49 3.18
106 107 3.064820 TGCTCCTTCGAGTTGTTTTGAAC 59.935 43.478 0.00 0.00 38.49 3.18
117 118 1.216710 GGTGGACTGCTCCTTCGAG 59.783 63.158 0.00 0.00 37.48 4.04
121 122 2.629617 CAAAAATGGTGGACTGCTCCTT 59.370 45.455 0.00 0.00 37.48 3.36
170 172 1.065418 GGACGGTTCCATGTGATCCTT 60.065 52.381 0.00 0.00 42.30 3.36
231 233 5.419471 GGTATCAGATCTAGGCGGACTATTT 59.581 44.000 0.00 0.00 0.00 1.40
244 246 3.637229 CCCTTACACGTGGTATCAGATCT 59.363 47.826 21.57 0.00 0.00 2.75
271 273 5.235186 CGCCATTAACACAGAGAGAATTAGG 59.765 44.000 0.00 0.00 0.00 2.69
275 277 3.535561 CCGCCATTAACACAGAGAGAAT 58.464 45.455 0.00 0.00 0.00 2.40
296 298 0.195096 TATCCCATCCCCTGTACCCC 59.805 60.000 0.00 0.00 0.00 4.95
297 299 1.359168 GTATCCCATCCCCTGTACCC 58.641 60.000 0.00 0.00 0.00 3.69
329 332 1.175654 TGTACCCTATCGCGTGTTCA 58.824 50.000 5.77 0.00 0.00 3.18
332 335 1.820519 TCTTTGTACCCTATCGCGTGT 59.179 47.619 5.77 0.00 0.00 4.49
333 336 2.572191 TCTTTGTACCCTATCGCGTG 57.428 50.000 5.77 0.00 0.00 5.34
335 338 3.431922 TCTTCTTTGTACCCTATCGCG 57.568 47.619 0.00 0.00 0.00 5.87
336 339 6.278363 TGTAATCTTCTTTGTACCCTATCGC 58.722 40.000 0.00 0.00 0.00 4.58
337 340 7.042658 GCTTGTAATCTTCTTTGTACCCTATCG 60.043 40.741 0.00 0.00 0.00 2.92
338 341 7.226918 GGCTTGTAATCTTCTTTGTACCCTATC 59.773 40.741 0.00 0.00 0.00 2.08
339 342 7.054751 GGCTTGTAATCTTCTTTGTACCCTAT 58.945 38.462 0.00 0.00 0.00 2.57
340 343 6.013206 TGGCTTGTAATCTTCTTTGTACCCTA 60.013 38.462 0.00 0.00 0.00 3.53
341 344 5.222048 TGGCTTGTAATCTTCTTTGTACCCT 60.222 40.000 0.00 0.00 0.00 4.34
342 345 5.007682 TGGCTTGTAATCTTCTTTGTACCC 58.992 41.667 0.00 0.00 0.00 3.69
344 347 5.390567 CGGTGGCTTGTAATCTTCTTTGTAC 60.391 44.000 0.00 0.00 0.00 2.90
345 348 4.693566 CGGTGGCTTGTAATCTTCTTTGTA 59.306 41.667 0.00 0.00 0.00 2.41
346 349 3.502211 CGGTGGCTTGTAATCTTCTTTGT 59.498 43.478 0.00 0.00 0.00 2.83
347 350 3.670627 GCGGTGGCTTGTAATCTTCTTTG 60.671 47.826 0.00 0.00 35.83 2.77
348 351 2.488153 GCGGTGGCTTGTAATCTTCTTT 59.512 45.455 0.00 0.00 35.83 2.52
375 380 3.326297 GCTATCCTGGCTTGGATTAGACT 59.674 47.826 15.51 0.00 43.79 3.24
376 381 3.326297 AGCTATCCTGGCTTGGATTAGAC 59.674 47.826 15.51 5.90 43.79 2.59
419 448 7.453393 CCCAGTGACACATGGAGTATATATTT 58.547 38.462 19.63 0.00 39.02 1.40
428 457 1.377725 GCCCCAGTGACACATGGAG 60.378 63.158 19.63 11.50 39.02 3.86
447 476 0.620556 CAAGGTCTAGCCCACCACAT 59.379 55.000 0.00 0.00 36.23 3.21
460 489 5.153950 AGAACCAGTGATAGTTCAAGGTC 57.846 43.478 11.70 0.00 40.03 3.85
461 490 4.593206 TGAGAACCAGTGATAGTTCAAGGT 59.407 41.667 11.70 0.00 41.70 3.50
467 496 5.808366 TTCTGTGAGAACCAGTGATAGTT 57.192 39.130 0.00 0.00 0.00 2.24
482 511 3.462483 TTGTTAGCGACCTTTCTGTGA 57.538 42.857 0.00 0.00 0.00 3.58
515 544 5.603596 AGTAGTTCGTTGTGTGGTAAATGA 58.396 37.500 0.00 0.00 0.00 2.57
522 551 8.932791 AGATTTTTATAGTAGTTCGTTGTGTGG 58.067 33.333 0.00 0.00 0.00 4.17
568 597 1.075542 TCGTTTGCGCGAATCTTGAT 58.924 45.000 14.34 0.00 37.99 2.57
569 598 0.862490 TTCGTTTGCGCGAATCTTGA 59.138 45.000 14.34 6.89 44.55 3.02
599 628 4.892965 TGCAGCAACCCCGCAGTT 62.893 61.111 0.00 0.00 0.00 3.16
601 630 2.438951 ATTTTGCAGCAACCCCGCAG 62.439 55.000 7.54 0.00 36.91 5.18
610 639 2.144833 CTGTGGGCGATTTTGCAGCA 62.145 55.000 0.00 0.00 36.28 4.41
648 2095 8.573035 AGCAGTCAATTTCTTTTTACGGAAATA 58.427 29.630 0.00 0.00 40.06 1.40
662 2109 3.486584 CGAGCTCAAAGCAGTCAATTTC 58.513 45.455 15.40 0.00 45.56 2.17
723 2173 1.886542 ACGATTCCTTTTGCCCTTGAC 59.113 47.619 0.00 0.00 0.00 3.18
781 2232 5.577164 CACAGGACTGTAAATTTACTCGGAG 59.423 44.000 24.81 17.27 42.83 4.63
802 2253 0.175302 CAGTTTTGCTGCCAACCACA 59.825 50.000 0.00 0.00 38.52 4.17
888 2342 0.607489 TGGCCTCTTTGCTTCAGCTC 60.607 55.000 3.32 0.00 42.66 4.09
911 2365 3.830178 TGTTGGCTACACTCTTGCTAGTA 59.170 43.478 0.00 0.00 0.00 1.82
983 2442 1.003112 ATGGCGAGCGGGTGTTAAA 60.003 52.632 0.00 0.00 0.00 1.52
1326 2796 1.281656 GTAGTTGTTGCCGTGGTGC 59.718 57.895 0.00 0.00 0.00 5.01
1506 3003 2.677003 CCACGCCACAACGATGTCC 61.677 63.158 0.00 0.00 37.82 4.02
1647 3144 2.078849 TGCTTGACGTGTACATGGAG 57.921 50.000 19.05 13.68 0.00 3.86
1729 3226 1.134788 CGTACCAAAGCCCTACTCTGG 60.135 57.143 0.00 0.00 0.00 3.86
1731 3228 1.823610 GACGTACCAAAGCCCTACTCT 59.176 52.381 0.00 0.00 0.00 3.24
1732 3229 1.823610 AGACGTACCAAAGCCCTACTC 59.176 52.381 0.00 0.00 0.00 2.59
1873 3446 2.094894 CGCCTTGCTTCAGTTCACTATG 59.905 50.000 0.00 0.00 0.00 2.23
1876 3449 0.106708 TCGCCTTGCTTCAGTTCACT 59.893 50.000 0.00 0.00 0.00 3.41
1877 3450 0.235926 GTCGCCTTGCTTCAGTTCAC 59.764 55.000 0.00 0.00 0.00 3.18
1878 3451 1.221466 CGTCGCCTTGCTTCAGTTCA 61.221 55.000 0.00 0.00 0.00 3.18
1879 3452 1.493311 CGTCGCCTTGCTTCAGTTC 59.507 57.895 0.00 0.00 0.00 3.01
1880 3453 1.961277 CCGTCGCCTTGCTTCAGTT 60.961 57.895 0.00 0.00 0.00 3.16
1910 3484 3.557054 GGGAACATCACACTGACTTGCTA 60.557 47.826 0.00 0.00 0.00 3.49
1980 3895 1.140312 TTGAGGCCCTGACTTGAACT 58.860 50.000 0.00 0.00 0.00 3.01
1982 3897 1.140312 AGTTGAGGCCCTGACTTGAA 58.860 50.000 0.00 0.00 0.00 2.69
1983 3898 2.024176 TAGTTGAGGCCCTGACTTGA 57.976 50.000 0.00 0.00 0.00 3.02
1984 3899 2.739932 CGATAGTTGAGGCCCTGACTTG 60.740 54.545 0.00 0.00 0.00 3.16
1985 3900 1.482593 CGATAGTTGAGGCCCTGACTT 59.517 52.381 0.00 0.00 0.00 3.01
1986 3901 1.115467 CGATAGTTGAGGCCCTGACT 58.885 55.000 0.00 3.10 0.00 3.41
1987 3902 3.669354 CGATAGTTGAGGCCCTGAC 57.331 57.895 0.00 0.00 0.00 3.51
2016 3931 6.982141 GTGGGGATTTTTACGAAAGAAAAGTT 59.018 34.615 0.00 0.00 0.00 2.66
2017 3932 6.097129 TGTGGGGATTTTTACGAAAGAAAAGT 59.903 34.615 0.00 0.00 0.00 2.66
2068 3983 0.965439 CCGTGCCATTTTTGAAGGGA 59.035 50.000 0.00 0.00 0.00 4.20
2148 4098 1.774254 CCATAGCACCTACCCATCCAA 59.226 52.381 0.00 0.00 0.00 3.53
2151 4101 1.768870 ACACCATAGCACCTACCCATC 59.231 52.381 0.00 0.00 0.00 3.51
2167 4117 4.513442 TCTCAACAACCAGCATATACACC 58.487 43.478 0.00 0.00 0.00 4.16
2171 4121 5.420725 ACACTCTCAACAACCAGCATATA 57.579 39.130 0.00 0.00 0.00 0.86
2172 4122 4.292186 ACACTCTCAACAACCAGCATAT 57.708 40.909 0.00 0.00 0.00 1.78
2173 4123 3.769739 ACACTCTCAACAACCAGCATA 57.230 42.857 0.00 0.00 0.00 3.14
2174 4124 2.645838 ACACTCTCAACAACCAGCAT 57.354 45.000 0.00 0.00 0.00 3.79
2249 5308 7.278646 TGTGCAGCTACTCAAGTTATAGAAATG 59.721 37.037 0.00 0.00 0.00 2.32
2269 5349 4.496360 TTGCATGGAATGTAAATGTGCAG 58.504 39.130 0.00 0.00 45.94 4.41
2301 5381 6.702972 CATGGAATGTAACATTCGCAAAAA 57.297 33.333 0.00 0.00 40.20 1.94
2432 5526 1.694150 CTGACCTCCTTGACAACCTGA 59.306 52.381 0.00 0.00 0.00 3.86
2477 5571 0.545071 TGGTGATGCTGACCTCCTCA 60.545 55.000 0.00 0.00 34.26 3.86
2522 5616 4.681978 GCGTTCAGGGTGGCGACT 62.682 66.667 0.00 0.00 0.00 4.18
3017 6111 5.466728 GTGAGTAACTCAGATGTGCTTGAAA 59.533 40.000 0.00 0.00 41.46 2.69
3058 6152 6.038161 CGTGAATCACATCAAGGCCTAATTTA 59.962 38.462 5.16 0.00 33.40 1.40
3059 6153 5.163622 CGTGAATCACATCAAGGCCTAATTT 60.164 40.000 5.16 0.00 33.40 1.82
3060 6154 4.336433 CGTGAATCACATCAAGGCCTAATT 59.664 41.667 5.16 0.00 33.40 1.40
3104 6198 5.700373 ACAAACCGTAGCCGTTATTTAGAAA 59.300 36.000 0.00 0.00 0.00 2.52
3136 6231 5.589050 GCATAAAAAGGGAAAGATACTCGGT 59.411 40.000 0.00 0.00 0.00 4.69
3180 6275 4.503007 CCCTTGATAACGAGTACAATGTCG 59.497 45.833 0.00 0.00 42.04 4.35
3181 6276 5.416947 ACCCTTGATAACGAGTACAATGTC 58.583 41.667 0.00 0.00 0.00 3.06
3182 6277 5.187186 AGACCCTTGATAACGAGTACAATGT 59.813 40.000 0.00 0.00 0.00 2.71
3183 6278 5.661458 AGACCCTTGATAACGAGTACAATG 58.339 41.667 0.00 0.00 0.00 2.82
3184 6279 5.934402 AGACCCTTGATAACGAGTACAAT 57.066 39.130 0.00 0.00 0.00 2.71
3185 6280 6.839124 TTAGACCCTTGATAACGAGTACAA 57.161 37.500 0.00 0.00 0.00 2.41
3186 6281 6.839124 TTTAGACCCTTGATAACGAGTACA 57.161 37.500 0.00 0.00 0.00 2.90
3187 6282 9.978044 ATTATTTAGACCCTTGATAACGAGTAC 57.022 33.333 0.00 0.00 0.00 2.73
3188 6283 9.976511 CATTATTTAGACCCTTGATAACGAGTA 57.023 33.333 0.00 0.00 0.00 2.59
3189 6284 7.931948 CCATTATTTAGACCCTTGATAACGAGT 59.068 37.037 0.00 0.00 0.00 4.18
3190 6285 7.095187 GCCATTATTTAGACCCTTGATAACGAG 60.095 40.741 0.00 0.00 0.00 4.18
3191 6286 6.708949 GCCATTATTTAGACCCTTGATAACGA 59.291 38.462 0.00 0.00 0.00 3.85
3192 6287 6.710744 AGCCATTATTTAGACCCTTGATAACG 59.289 38.462 0.00 0.00 0.00 3.18
3193 6288 9.000486 GTAGCCATTATTTAGACCCTTGATAAC 58.000 37.037 0.00 0.00 0.00 1.89
3194 6289 7.876068 CGTAGCCATTATTTAGACCCTTGATAA 59.124 37.037 0.00 0.00 0.00 1.75
3195 6290 7.383687 CGTAGCCATTATTTAGACCCTTGATA 58.616 38.462 0.00 0.00 0.00 2.15
3196 6291 6.231211 CGTAGCCATTATTTAGACCCTTGAT 58.769 40.000 0.00 0.00 0.00 2.57
3197 6292 5.454187 CCGTAGCCATTATTTAGACCCTTGA 60.454 44.000 0.00 0.00 0.00 3.02
3198 6293 4.755123 CCGTAGCCATTATTTAGACCCTTG 59.245 45.833 0.00 0.00 0.00 3.61
3199 6294 4.411212 ACCGTAGCCATTATTTAGACCCTT 59.589 41.667 0.00 0.00 0.00 3.95
3200 6295 3.971971 ACCGTAGCCATTATTTAGACCCT 59.028 43.478 0.00 0.00 0.00 4.34
3201 6296 4.347360 ACCGTAGCCATTATTTAGACCC 57.653 45.455 0.00 0.00 0.00 4.46
3202 6297 5.587443 ACAAACCGTAGCCATTATTTAGACC 59.413 40.000 0.00 0.00 0.00 3.85
3203 6298 6.314400 TGACAAACCGTAGCCATTATTTAGAC 59.686 38.462 0.00 0.00 0.00 2.59
3204 6299 6.408035 TGACAAACCGTAGCCATTATTTAGA 58.592 36.000 0.00 0.00 0.00 2.10
3205 6300 6.671614 TGACAAACCGTAGCCATTATTTAG 57.328 37.500 0.00 0.00 0.00 1.85
3206 6301 6.127952 GGTTGACAAACCGTAGCCATTATTTA 60.128 38.462 0.00 0.00 46.32 1.40
3207 6302 5.336134 GGTTGACAAACCGTAGCCATTATTT 60.336 40.000 0.00 0.00 46.32 1.40
3208 6303 4.157105 GGTTGACAAACCGTAGCCATTATT 59.843 41.667 0.00 0.00 46.32 1.40
3209 6304 3.692593 GGTTGACAAACCGTAGCCATTAT 59.307 43.478 0.00 0.00 46.32 1.28
3210 6305 3.075884 GGTTGACAAACCGTAGCCATTA 58.924 45.455 0.00 0.00 46.32 1.90
3211 6306 1.883926 GGTTGACAAACCGTAGCCATT 59.116 47.619 0.00 0.00 46.32 3.16
3212 6307 1.530323 GGTTGACAAACCGTAGCCAT 58.470 50.000 0.00 0.00 46.32 4.40
3213 6308 3.009612 GGTTGACAAACCGTAGCCA 57.990 52.632 0.00 0.00 46.32 4.75
3221 6316 1.995376 ACTGGGGATGGTTGACAAAC 58.005 50.000 0.00 0.00 35.40 2.93
3222 6317 3.591527 AGATACTGGGGATGGTTGACAAA 59.408 43.478 0.00 0.00 0.00 2.83
3223 6318 3.189606 AGATACTGGGGATGGTTGACAA 58.810 45.455 0.00 0.00 0.00 3.18
3224 6319 2.845659 AGATACTGGGGATGGTTGACA 58.154 47.619 0.00 0.00 0.00 3.58
3225 6320 3.933861 AAGATACTGGGGATGGTTGAC 57.066 47.619 0.00 0.00 0.00 3.18
3226 6321 6.395780 TTTTAAGATACTGGGGATGGTTGA 57.604 37.500 0.00 0.00 0.00 3.18
3227 6322 7.777910 TGTATTTTAAGATACTGGGGATGGTTG 59.222 37.037 15.07 0.00 34.36 3.77
3228 6323 7.878495 TGTATTTTAAGATACTGGGGATGGTT 58.122 34.615 15.07 0.00 34.36 3.67
3229 6324 7.128883 ACTGTATTTTAAGATACTGGGGATGGT 59.871 37.037 20.14 2.83 36.39 3.55
3230 6325 7.518188 ACTGTATTTTAAGATACTGGGGATGG 58.482 38.462 20.14 5.45 36.39 3.51
3233 6328 9.220906 ACATACTGTATTTTAAGATACTGGGGA 57.779 33.333 20.14 10.31 36.39 4.81
3234 6329 9.273016 CACATACTGTATTTTAAGATACTGGGG 57.727 37.037 20.14 13.76 36.39 4.96
3235 6330 9.832445 ACACATACTGTATTTTAAGATACTGGG 57.168 33.333 20.14 12.76 36.39 4.45
3241 6336 9.719355 TGTGTCACACATACTGTATTTTAAGAT 57.281 29.630 6.50 0.00 39.62 2.40
3307 6402 3.858812 ACGTGTCGCGCATAGTTTATTTA 59.141 39.130 8.75 0.00 46.11 1.40
3328 6423 5.220931 GGTGAACTGGCTTCATCATATTCAC 60.221 44.000 0.00 0.00 41.10 3.18
3342 6437 4.729868 AGATATTATTGGGGTGAACTGGC 58.270 43.478 0.00 0.00 0.00 4.85
3346 6441 5.362430 TGCCAAAGATATTATTGGGGTGAAC 59.638 40.000 17.40 5.24 45.03 3.18
3374 6469 7.876068 GGATATGATCAACAAATTTGGCATGAT 59.124 33.333 24.36 24.36 34.81 2.45
3412 6507 1.734465 GGCACCTTCATCTCTCAAACG 59.266 52.381 0.00 0.00 0.00 3.60
3438 6533 5.529581 TGGAAAGGAAGTTTGAAATGTCC 57.470 39.130 2.58 2.58 0.00 4.02
3474 6618 7.184106 TCTTTTTGTGTACGTTTAGCAAAGAG 58.816 34.615 0.00 6.14 34.59 2.85
3513 6660 4.165372 TCAACCCTGTTCACTAGGAAGTTT 59.835 41.667 0.00 0.00 37.52 2.66
3602 6750 4.578928 GGTAAACTTCACAAGGCTCTTTGA 59.421 41.667 0.00 0.00 0.00 2.69
3603 6751 4.261614 GGGTAAACTTCACAAGGCTCTTTG 60.262 45.833 0.00 0.00 0.00 2.77
3604 6752 3.889538 GGGTAAACTTCACAAGGCTCTTT 59.110 43.478 0.00 0.00 0.00 2.52
3605 6753 3.487372 GGGTAAACTTCACAAGGCTCTT 58.513 45.455 0.00 0.00 0.00 2.85
3606 6754 2.224793 GGGGTAAACTTCACAAGGCTCT 60.225 50.000 0.00 0.00 0.00 4.09
3607 6755 2.160205 GGGGTAAACTTCACAAGGCTC 58.840 52.381 0.00 0.00 0.00 4.70
3608 6756 1.497286 TGGGGTAAACTTCACAAGGCT 59.503 47.619 0.00 0.00 0.00 4.58
3609 6757 1.989706 TGGGGTAAACTTCACAAGGC 58.010 50.000 0.00 0.00 0.00 4.35
3610 6758 6.210584 ACATTATTGGGGTAAACTTCACAAGG 59.789 38.462 0.00 0.00 0.00 3.61
3611 6759 7.227049 ACATTATTGGGGTAAACTTCACAAG 57.773 36.000 0.00 0.00 0.00 3.16
3612 6760 6.072397 CGACATTATTGGGGTAAACTTCACAA 60.072 38.462 0.00 0.00 0.00 3.33
3613 6761 5.413213 CGACATTATTGGGGTAAACTTCACA 59.587 40.000 0.00 0.00 0.00 3.58
3614 6762 5.644636 TCGACATTATTGGGGTAAACTTCAC 59.355 40.000 0.00 0.00 0.00 3.18
3615 6763 5.806818 TCGACATTATTGGGGTAAACTTCA 58.193 37.500 0.00 0.00 0.00 3.02
3616 6764 5.296035 CCTCGACATTATTGGGGTAAACTTC 59.704 44.000 0.00 0.00 0.00 3.01
3617 6765 5.190677 CCTCGACATTATTGGGGTAAACTT 58.809 41.667 0.00 0.00 0.00 2.66
3618 6766 4.384868 CCCTCGACATTATTGGGGTAAACT 60.385 45.833 0.00 0.00 34.46 2.66
3619 6767 3.881089 CCCTCGACATTATTGGGGTAAAC 59.119 47.826 0.00 0.00 34.46 2.01
3620 6768 4.159244 CCCTCGACATTATTGGGGTAAA 57.841 45.455 0.00 0.00 34.46 2.01
3621 6769 3.849563 CCCTCGACATTATTGGGGTAA 57.150 47.619 0.00 0.00 34.46 2.85
3625 6773 2.172717 AGTTCCCCTCGACATTATTGGG 59.827 50.000 0.00 0.00 37.68 4.12
3626 6774 3.560636 AGTTCCCCTCGACATTATTGG 57.439 47.619 0.00 0.00 0.00 3.16
3627 6775 5.897377 AAAAGTTCCCCTCGACATTATTG 57.103 39.130 0.00 0.00 0.00 1.90
3677 6825 6.320418 ACGGACTTAAACTCATGGAACTTTTT 59.680 34.615 0.00 0.00 0.00 1.94
3678 6826 5.826208 ACGGACTTAAACTCATGGAACTTTT 59.174 36.000 0.00 0.00 0.00 2.27
3679 6827 5.374071 ACGGACTTAAACTCATGGAACTTT 58.626 37.500 0.00 0.00 0.00 2.66
3680 6828 4.969484 ACGGACTTAAACTCATGGAACTT 58.031 39.130 0.00 0.00 0.00 2.66
3681 6829 4.618920 ACGGACTTAAACTCATGGAACT 57.381 40.909 0.00 0.00 0.00 3.01
3682 6830 6.647895 TCTTTACGGACTTAAACTCATGGAAC 59.352 38.462 0.00 0.00 0.00 3.62
3683 6831 6.761312 TCTTTACGGACTTAAACTCATGGAA 58.239 36.000 0.00 0.00 0.00 3.53
3684 6832 6.349243 TCTTTACGGACTTAAACTCATGGA 57.651 37.500 0.00 0.00 0.00 3.41
3685 6833 5.063564 GCTCTTTACGGACTTAAACTCATGG 59.936 44.000 0.00 0.00 0.00 3.66
3686 6834 5.063564 GGCTCTTTACGGACTTAAACTCATG 59.936 44.000 0.00 0.00 0.00 3.07
3687 6835 5.046520 AGGCTCTTTACGGACTTAAACTCAT 60.047 40.000 0.00 0.00 0.00 2.90
3688 6836 4.282703 AGGCTCTTTACGGACTTAAACTCA 59.717 41.667 0.00 0.00 0.00 3.41
3689 6837 4.818642 AGGCTCTTTACGGACTTAAACTC 58.181 43.478 0.00 0.00 0.00 3.01
3690 6838 4.886496 AGGCTCTTTACGGACTTAAACT 57.114 40.909 0.00 0.00 0.00 2.66
3691 6839 4.753610 ACAAGGCTCTTTACGGACTTAAAC 59.246 41.667 0.00 0.00 0.00 2.01
3692 6840 4.753107 CACAAGGCTCTTTACGGACTTAAA 59.247 41.667 0.00 0.00 0.00 1.52
3693 6841 4.039488 TCACAAGGCTCTTTACGGACTTAA 59.961 41.667 0.00 0.00 0.00 1.85
3694 6842 3.575256 TCACAAGGCTCTTTACGGACTTA 59.425 43.478 0.00 0.00 0.00 2.24
3695 6843 2.367567 TCACAAGGCTCTTTACGGACTT 59.632 45.455 0.00 0.00 0.00 3.01
3696 6844 1.968493 TCACAAGGCTCTTTACGGACT 59.032 47.619 0.00 0.00 0.00 3.85
3697 6845 2.450609 TCACAAGGCTCTTTACGGAC 57.549 50.000 0.00 0.00 0.00 4.79
3698 6846 2.367567 ACTTCACAAGGCTCTTTACGGA 59.632 45.455 0.00 0.00 0.00 4.69
3699 6847 2.767505 ACTTCACAAGGCTCTTTACGG 58.232 47.619 0.00 0.00 0.00 4.02
3700 6848 4.813296 AAACTTCACAAGGCTCTTTACG 57.187 40.909 0.00 0.00 0.00 3.18
3701 6849 7.119262 TGCTATAAACTTCACAAGGCTCTTTAC 59.881 37.037 0.00 0.00 0.00 2.01
3702 6850 7.165485 TGCTATAAACTTCACAAGGCTCTTTA 58.835 34.615 0.00 0.00 0.00 1.85
3703 6851 6.003950 TGCTATAAACTTCACAAGGCTCTTT 58.996 36.000 0.00 0.00 0.00 2.52
3704 6852 5.560724 TGCTATAAACTTCACAAGGCTCTT 58.439 37.500 0.00 0.00 0.00 2.85
3705 6853 5.165961 TGCTATAAACTTCACAAGGCTCT 57.834 39.130 0.00 0.00 0.00 4.09
3706 6854 5.163713 CCTTGCTATAAACTTCACAAGGCTC 60.164 44.000 6.65 0.00 45.33 4.70
3707 6855 4.702131 CCTTGCTATAAACTTCACAAGGCT 59.298 41.667 6.65 0.00 45.33 4.58
3708 6856 4.986622 CCTTGCTATAAACTTCACAAGGC 58.013 43.478 6.65 0.00 45.33 4.35
3710 6858 6.016276 ACCAACCTTGCTATAAACTTCACAAG 60.016 38.462 0.00 0.00 35.43 3.16
3711 6859 5.830991 ACCAACCTTGCTATAAACTTCACAA 59.169 36.000 0.00 0.00 0.00 3.33
3712 6860 5.381757 ACCAACCTTGCTATAAACTTCACA 58.618 37.500 0.00 0.00 0.00 3.58
3713 6861 5.472137 TGACCAACCTTGCTATAAACTTCAC 59.528 40.000 0.00 0.00 0.00 3.18
3714 6862 5.626142 TGACCAACCTTGCTATAAACTTCA 58.374 37.500 0.00 0.00 0.00 3.02
3715 6863 6.206829 AGTTGACCAACCTTGCTATAAACTTC 59.793 38.462 9.07 0.00 42.06 3.01
3716 6864 6.068670 AGTTGACCAACCTTGCTATAAACTT 58.931 36.000 9.07 0.00 42.06 2.66
3717 6865 5.631119 AGTTGACCAACCTTGCTATAAACT 58.369 37.500 9.07 0.00 42.06 2.66
3718 6866 5.959618 AGTTGACCAACCTTGCTATAAAC 57.040 39.130 9.07 0.00 42.06 2.01
3719 6867 5.242838 CCAAGTTGACCAACCTTGCTATAAA 59.757 40.000 3.87 0.00 42.06 1.40
3720 6868 4.764823 CCAAGTTGACCAACCTTGCTATAA 59.235 41.667 3.87 0.00 42.06 0.98
3721 6869 4.331968 CCAAGTTGACCAACCTTGCTATA 58.668 43.478 3.87 0.00 42.06 1.31
3722 6870 3.157087 CCAAGTTGACCAACCTTGCTAT 58.843 45.455 3.87 0.00 42.06 2.97
3723 6871 2.582052 CCAAGTTGACCAACCTTGCTA 58.418 47.619 3.87 0.00 42.06 3.49
3724 6872 1.402787 CCAAGTTGACCAACCTTGCT 58.597 50.000 3.87 0.00 42.06 3.91
3725 6873 0.389025 CCCAAGTTGACCAACCTTGC 59.611 55.000 3.87 0.00 42.06 4.01
3726 6874 1.956477 CTCCCAAGTTGACCAACCTTG 59.044 52.381 3.87 11.65 42.06 3.61
3727 6875 1.569072 ACTCCCAAGTTGACCAACCTT 59.431 47.619 3.87 1.62 42.06 3.50
3728 6876 1.222567 ACTCCCAAGTTGACCAACCT 58.777 50.000 3.87 0.00 42.06 3.50
3729 6877 2.067365 AACTCCCAAGTTGACCAACC 57.933 50.000 3.87 0.00 44.13 3.77
3730 6878 3.445805 TGAAAACTCCCAAGTTGACCAAC 59.554 43.478 3.87 4.81 45.07 3.77
3731 6879 3.702792 TGAAAACTCCCAAGTTGACCAA 58.297 40.909 3.87 0.00 45.07 3.67
3732 6880 3.374042 TGAAAACTCCCAAGTTGACCA 57.626 42.857 3.87 0.00 45.07 4.02
3733 6881 4.729227 TTTGAAAACTCCCAAGTTGACC 57.271 40.909 3.87 0.00 45.07 4.02
3734 6882 5.720202 AGTTTTGAAAACTCCCAAGTTGAC 58.280 37.500 16.96 0.00 45.07 3.18
3735 6883 5.993748 AGTTTTGAAAACTCCCAAGTTGA 57.006 34.783 16.96 0.00 45.07 3.18
3736 6884 6.096282 TCCTAGTTTTGAAAACTCCCAAGTTG 59.904 38.462 24.86 7.24 45.07 3.16
3738 6886 5.762279 TCCTAGTTTTGAAAACTCCCAAGT 58.238 37.500 24.86 4.34 37.32 3.16
3739 6887 5.241728 CCTCCTAGTTTTGAAAACTCCCAAG 59.758 44.000 24.86 16.60 0.00 3.61
3740 6888 5.137551 CCTCCTAGTTTTGAAAACTCCCAA 58.862 41.667 24.86 8.49 0.00 4.12
3741 6889 4.167307 ACCTCCTAGTTTTGAAAACTCCCA 59.833 41.667 24.86 8.83 0.00 4.37
3742 6890 4.726583 ACCTCCTAGTTTTGAAAACTCCC 58.273 43.478 24.86 0.00 0.00 4.30
3743 6891 5.593095 ACAACCTCCTAGTTTTGAAAACTCC 59.407 40.000 24.86 0.00 0.00 3.85
3744 6892 6.694877 ACAACCTCCTAGTTTTGAAAACTC 57.305 37.500 24.86 0.00 0.00 3.01
3745 6893 7.476540 AAACAACCTCCTAGTTTTGAAAACT 57.523 32.000 24.58 24.58 31.95 2.66
3746 6894 9.811995 ATTAAACAACCTCCTAGTTTTGAAAAC 57.188 29.630 12.62 12.62 36.85 2.43
3749 6897 9.810545 CAAATTAAACAACCTCCTAGTTTTGAA 57.189 29.630 0.00 0.00 36.85 2.69
3750 6898 9.191479 TCAAATTAAACAACCTCCTAGTTTTGA 57.809 29.630 0.00 0.00 36.85 2.69
3751 6899 9.244799 GTCAAATTAAACAACCTCCTAGTTTTG 57.755 33.333 0.00 0.00 36.85 2.44
3752 6900 9.197306 AGTCAAATTAAACAACCTCCTAGTTTT 57.803 29.630 0.00 0.00 36.85 2.43
3753 6901 8.762481 AGTCAAATTAAACAACCTCCTAGTTT 57.238 30.769 0.00 0.00 38.79 2.66
3754 6902 8.762481 AAGTCAAATTAAACAACCTCCTAGTT 57.238 30.769 0.00 0.00 0.00 2.24
3755 6903 8.218488 AGAAGTCAAATTAAACAACCTCCTAGT 58.782 33.333 0.00 0.00 0.00 2.57
3756 6904 8.622948 AGAAGTCAAATTAAACAACCTCCTAG 57.377 34.615 0.00 0.00 0.00 3.02
3757 6905 9.498176 GTAGAAGTCAAATTAAACAACCTCCTA 57.502 33.333 0.00 0.00 0.00 2.94
3758 6906 8.218488 AGTAGAAGTCAAATTAAACAACCTCCT 58.782 33.333 0.00 0.00 0.00 3.69
3759 6907 8.392372 AGTAGAAGTCAAATTAAACAACCTCC 57.608 34.615 0.00 0.00 0.00 4.30
3760 6908 9.880064 GAAGTAGAAGTCAAATTAAACAACCTC 57.120 33.333 0.00 0.00 0.00 3.85
3761 6909 9.403583 TGAAGTAGAAGTCAAATTAAACAACCT 57.596 29.630 0.00 0.00 0.00 3.50
3762 6910 9.665264 CTGAAGTAGAAGTCAAATTAAACAACC 57.335 33.333 0.00 0.00 0.00 3.77
3795 6943 1.202842 ACCGTTCTTGTGTTTAGGGGG 60.203 52.381 0.00 0.00 0.00 5.40
3796 6944 2.265589 ACCGTTCTTGTGTTTAGGGG 57.734 50.000 0.00 0.00 0.00 4.79
3797 6945 3.207778 TGAACCGTTCTTGTGTTTAGGG 58.792 45.455 12.43 0.00 0.00 3.53
3798 6946 4.886247 TTGAACCGTTCTTGTGTTTAGG 57.114 40.909 12.43 0.00 0.00 2.69
3799 6947 7.112984 GCTAATTTGAACCGTTCTTGTGTTTAG 59.887 37.037 12.43 10.77 0.00 1.85
3800 6948 6.913673 GCTAATTTGAACCGTTCTTGTGTTTA 59.086 34.615 12.43 2.55 0.00 2.01
3801 6949 5.746721 GCTAATTTGAACCGTTCTTGTGTTT 59.253 36.000 12.43 1.64 0.00 2.83
3802 6950 5.278604 GCTAATTTGAACCGTTCTTGTGTT 58.721 37.500 12.43 3.81 0.00 3.32
3803 6951 4.261447 GGCTAATTTGAACCGTTCTTGTGT 60.261 41.667 12.43 0.00 0.00 3.72
3804 6952 4.226761 GGCTAATTTGAACCGTTCTTGTG 58.773 43.478 12.43 0.41 0.00 3.33
3805 6953 3.254903 GGGCTAATTTGAACCGTTCTTGT 59.745 43.478 12.43 0.00 0.00 3.16
3806 6954 3.254657 TGGGCTAATTTGAACCGTTCTTG 59.745 43.478 12.43 0.00 0.00 3.02
3807 6955 3.492337 TGGGCTAATTTGAACCGTTCTT 58.508 40.909 12.43 1.71 0.00 2.52
3808 6956 3.149005 TGGGCTAATTTGAACCGTTCT 57.851 42.857 12.43 0.00 0.00 3.01
3809 6957 4.201980 GGTATGGGCTAATTTGAACCGTTC 60.202 45.833 4.18 4.18 0.00 3.95
3810 6958 3.697542 GGTATGGGCTAATTTGAACCGTT 59.302 43.478 0.00 0.00 0.00 4.44
3811 6959 3.053917 AGGTATGGGCTAATTTGAACCGT 60.054 43.478 0.00 0.00 0.00 4.83
3812 6960 3.551846 AGGTATGGGCTAATTTGAACCG 58.448 45.455 0.00 0.00 0.00 4.44
3813 6961 4.793201 AGAGGTATGGGCTAATTTGAACC 58.207 43.478 0.00 0.00 0.00 3.62
3814 6962 5.885912 TGAAGAGGTATGGGCTAATTTGAAC 59.114 40.000 0.00 0.00 0.00 3.18
3815 6963 6.073447 TGAAGAGGTATGGGCTAATTTGAA 57.927 37.500 0.00 0.00 0.00 2.69
3816 6964 5.708736 TGAAGAGGTATGGGCTAATTTGA 57.291 39.130 0.00 0.00 0.00 2.69
3817 6965 8.641498 ATTATGAAGAGGTATGGGCTAATTTG 57.359 34.615 0.00 0.00 0.00 2.32
3820 6968 9.965902 CTTTATTATGAAGAGGTATGGGCTAAT 57.034 33.333 0.00 0.00 0.00 1.73
3821 6969 8.383175 CCTTTATTATGAAGAGGTATGGGCTAA 58.617 37.037 0.00 0.00 0.00 3.09
3822 6970 7.737607 TCCTTTATTATGAAGAGGTATGGGCTA 59.262 37.037 0.00 0.00 0.00 3.93
3823 6971 6.562608 TCCTTTATTATGAAGAGGTATGGGCT 59.437 38.462 0.00 0.00 0.00 5.19
3824 6972 6.655425 GTCCTTTATTATGAAGAGGTATGGGC 59.345 42.308 0.00 0.00 0.00 5.36
3825 6973 7.745717 TGTCCTTTATTATGAAGAGGTATGGG 58.254 38.462 0.00 0.00 0.00 4.00
3826 6974 9.224267 CATGTCCTTTATTATGAAGAGGTATGG 57.776 37.037 0.00 0.00 0.00 2.74
3830 6978 7.941238 CCATCATGTCCTTTATTATGAAGAGGT 59.059 37.037 0.00 0.00 33.71 3.85
3831 6979 7.941238 ACCATCATGTCCTTTATTATGAAGAGG 59.059 37.037 0.00 0.00 33.71 3.69
3832 6980 8.915057 ACCATCATGTCCTTTATTATGAAGAG 57.085 34.615 0.00 0.00 33.71 2.85
3833 6981 8.493607 TGACCATCATGTCCTTTATTATGAAGA 58.506 33.333 0.00 0.00 33.71 2.87
3834 6982 8.681486 TGACCATCATGTCCTTTATTATGAAG 57.319 34.615 0.00 0.00 33.71 3.02
3841 6989 9.425248 ACAAAATATGACCATCATGTCCTTTAT 57.575 29.630 1.49 0.00 37.70 1.40
3842 6990 8.821686 ACAAAATATGACCATCATGTCCTTTA 57.178 30.769 1.49 0.00 37.70 1.85
3843 6991 7.722949 ACAAAATATGACCATCATGTCCTTT 57.277 32.000 1.49 0.00 37.70 3.11
3844 6992 7.178983 ACAACAAAATATGACCATCATGTCCTT 59.821 33.333 1.49 0.00 37.70 3.36
3845 6993 6.664816 ACAACAAAATATGACCATCATGTCCT 59.335 34.615 1.49 0.00 37.70 3.85
3846 6994 6.753279 CACAACAAAATATGACCATCATGTCC 59.247 38.462 1.49 0.00 37.70 4.02
3847 6995 7.315142 ACACAACAAAATATGACCATCATGTC 58.685 34.615 1.49 0.00 37.70 3.06
3848 6996 7.230849 ACACAACAAAATATGACCATCATGT 57.769 32.000 1.49 0.00 37.70 3.21
3849 6997 9.240159 CATACACAACAAAATATGACCATCATG 57.760 33.333 1.49 0.00 37.70 3.07
3850 6998 8.970020 ACATACACAACAAAATATGACCATCAT 58.030 29.630 0.00 0.00 40.72 2.45
3851 6999 8.347004 ACATACACAACAAAATATGACCATCA 57.653 30.769 0.00 0.00 0.00 3.07
3852 7000 9.638239 AAACATACACAACAAAATATGACCATC 57.362 29.630 0.00 0.00 0.00 3.51
3853 7001 9.995003 AAAACATACACAACAAAATATGACCAT 57.005 25.926 0.00 0.00 0.00 3.55
3854 7002 9.823647 AAAAACATACACAACAAAATATGACCA 57.176 25.926 0.00 0.00 0.00 4.02
3890 7038 8.840321 GCCTATGCGTATAAATCAAATGGATAT 58.160 33.333 0.00 0.00 34.28 1.63
3891 7039 7.282224 GGCCTATGCGTATAAATCAAATGGATA 59.718 37.037 0.00 0.00 38.85 2.59
3892 7040 6.095440 GGCCTATGCGTATAAATCAAATGGAT 59.905 38.462 0.00 0.00 38.85 3.41
3893 7041 5.414454 GGCCTATGCGTATAAATCAAATGGA 59.586 40.000 0.00 0.00 38.85 3.41
3894 7042 5.640732 GGCCTATGCGTATAAATCAAATGG 58.359 41.667 0.00 0.00 38.85 3.16
3895 7043 5.106712 ACGGCCTATGCGTATAAATCAAATG 60.107 40.000 0.00 0.00 38.85 2.32
3896 7044 5.001232 ACGGCCTATGCGTATAAATCAAAT 58.999 37.500 0.00 0.00 38.85 2.32
3897 7045 4.382291 ACGGCCTATGCGTATAAATCAAA 58.618 39.130 0.00 0.00 38.85 2.69
3898 7046 3.997762 ACGGCCTATGCGTATAAATCAA 58.002 40.909 0.00 0.00 38.85 2.57
3899 7047 3.671008 ACGGCCTATGCGTATAAATCA 57.329 42.857 0.00 0.00 38.85 2.57
3900 7048 4.325472 GTGTACGGCCTATGCGTATAAATC 59.675 45.833 0.00 0.00 38.85 2.17
3901 7049 4.021719 AGTGTACGGCCTATGCGTATAAAT 60.022 41.667 0.00 0.00 38.85 1.40
3902 7050 3.318839 AGTGTACGGCCTATGCGTATAAA 59.681 43.478 0.00 0.00 38.85 1.40
3903 7051 2.886523 AGTGTACGGCCTATGCGTATAA 59.113 45.455 0.00 0.00 38.85 0.98
3904 7052 2.507484 AGTGTACGGCCTATGCGTATA 58.493 47.619 0.00 0.00 38.85 1.47
3905 7053 1.325355 AGTGTACGGCCTATGCGTAT 58.675 50.000 0.00 0.00 38.85 3.06
3906 7054 1.105457 AAGTGTACGGCCTATGCGTA 58.895 50.000 0.00 0.00 38.85 4.42
3907 7055 0.459585 CAAGTGTACGGCCTATGCGT 60.460 55.000 0.00 0.00 38.85 5.24
3908 7056 1.762222 GCAAGTGTACGGCCTATGCG 61.762 60.000 0.00 0.00 38.85 4.73
3909 7057 1.436983 GGCAAGTGTACGGCCTATGC 61.437 60.000 0.00 0.37 44.32 3.14
3910 7058 0.814010 GGGCAAGTGTACGGCCTATG 60.814 60.000 16.44 0.00 46.87 2.23
3911 7059 1.525442 GGGCAAGTGTACGGCCTAT 59.475 57.895 16.44 0.00 46.87 2.57
3912 7060 2.983791 GGGCAAGTGTACGGCCTA 59.016 61.111 16.44 0.00 46.87 3.93
3913 7061 4.388499 CGGGCAAGTGTACGGCCT 62.388 66.667 16.44 0.00 46.87 5.19
3916 7064 3.118454 CAGCGGGCAAGTGTACGG 61.118 66.667 0.00 0.00 0.00 4.02
3917 7065 3.118454 CCAGCGGGCAAGTGTACG 61.118 66.667 0.00 0.00 0.00 3.67
3918 7066 2.746277 CCCAGCGGGCAAGTGTAC 60.746 66.667 0.00 0.00 35.35 2.90
3934 7082 0.332972 AAGAGATGGTTGGGAAGGCC 59.667 55.000 0.00 0.00 0.00 5.19
3935 7083 2.222227 AAAGAGATGGTTGGGAAGGC 57.778 50.000 0.00 0.00 0.00 4.35
3936 7084 5.066505 CGATTTAAAGAGATGGTTGGGAAGG 59.933 44.000 0.00 0.00 0.00 3.46
3937 7085 5.449177 GCGATTTAAAGAGATGGTTGGGAAG 60.449 44.000 0.00 0.00 0.00 3.46
3938 7086 4.398044 GCGATTTAAAGAGATGGTTGGGAA 59.602 41.667 0.00 0.00 0.00 3.97
3939 7087 3.945285 GCGATTTAAAGAGATGGTTGGGA 59.055 43.478 0.00 0.00 0.00 4.37
3940 7088 3.694072 TGCGATTTAAAGAGATGGTTGGG 59.306 43.478 0.00 0.00 0.00 4.12
3941 7089 4.963276 TGCGATTTAAAGAGATGGTTGG 57.037 40.909 0.00 0.00 0.00 3.77
3942 7090 7.636259 TTTTTGCGATTTAAAGAGATGGTTG 57.364 32.000 0.00 0.00 0.00 3.77
3964 7112 6.150976 TCGAATCTTGGCACACTCATATTTTT 59.849 34.615 0.00 0.00 39.29 1.94
3965 7113 5.647658 TCGAATCTTGGCACACTCATATTTT 59.352 36.000 0.00 0.00 39.29 1.82
3966 7114 5.185454 TCGAATCTTGGCACACTCATATTT 58.815 37.500 0.00 0.00 39.29 1.40
3967 7115 4.769688 TCGAATCTTGGCACACTCATATT 58.230 39.130 0.00 0.00 39.29 1.28
3968 7116 4.100035 TCTCGAATCTTGGCACACTCATAT 59.900 41.667 0.00 0.00 39.29 1.78
3969 7117 3.447229 TCTCGAATCTTGGCACACTCATA 59.553 43.478 0.00 0.00 39.29 2.15
3970 7118 2.234661 TCTCGAATCTTGGCACACTCAT 59.765 45.455 0.00 0.00 39.29 2.90
3971 7119 1.618343 TCTCGAATCTTGGCACACTCA 59.382 47.619 0.00 0.00 39.29 3.41
3972 7120 1.996191 GTCTCGAATCTTGGCACACTC 59.004 52.381 0.00 0.00 39.29 3.51
3973 7121 1.344438 TGTCTCGAATCTTGGCACACT 59.656 47.619 0.00 0.00 39.29 3.55
3974 7122 1.728971 CTGTCTCGAATCTTGGCACAC 59.271 52.381 0.00 0.00 39.29 3.82
3975 7123 1.338105 CCTGTCTCGAATCTTGGCACA 60.338 52.381 0.00 0.00 0.00 4.57
3976 7124 1.066858 TCCTGTCTCGAATCTTGGCAC 60.067 52.381 0.00 0.00 0.00 5.01
3977 7125 1.266178 TCCTGTCTCGAATCTTGGCA 58.734 50.000 0.00 0.00 0.00 4.92
3978 7126 2.003301 GTTCCTGTCTCGAATCTTGGC 58.997 52.381 0.00 0.00 0.00 4.52
3979 7127 3.601443 AGTTCCTGTCTCGAATCTTGG 57.399 47.619 0.00 0.00 0.00 3.61
3980 7128 4.624882 CAGAAGTTCCTGTCTCGAATCTTG 59.375 45.833 0.00 0.00 0.00 3.02
3981 7129 4.322349 CCAGAAGTTCCTGTCTCGAATCTT 60.322 45.833 0.00 0.00 32.43 2.40
3982 7130 3.194542 CCAGAAGTTCCTGTCTCGAATCT 59.805 47.826 0.00 0.00 32.43 2.40
3983 7131 3.056465 ACCAGAAGTTCCTGTCTCGAATC 60.056 47.826 0.00 0.00 32.43 2.52
3984 7132 2.900546 ACCAGAAGTTCCTGTCTCGAAT 59.099 45.455 0.00 0.00 32.43 3.34
3985 7133 2.317040 ACCAGAAGTTCCTGTCTCGAA 58.683 47.619 0.00 0.00 32.43 3.71
3986 7134 1.996798 ACCAGAAGTTCCTGTCTCGA 58.003 50.000 0.00 0.00 32.43 4.04
3987 7135 2.821991 AACCAGAAGTTCCTGTCTCG 57.178 50.000 0.00 0.00 30.99 4.04
3996 7144 3.380004 TGTCGCATTTTGAACCAGAAGTT 59.620 39.130 0.00 0.00 43.07 2.66
3997 7145 2.948979 TGTCGCATTTTGAACCAGAAGT 59.051 40.909 0.00 0.00 0.00 3.01
3998 7146 3.003689 AGTGTCGCATTTTGAACCAGAAG 59.996 43.478 0.00 0.00 0.00 2.85
3999 7147 2.948979 AGTGTCGCATTTTGAACCAGAA 59.051 40.909 0.00 0.00 0.00 3.02
4000 7148 2.571212 AGTGTCGCATTTTGAACCAGA 58.429 42.857 0.00 0.00 0.00 3.86
4001 7149 4.685169 ATAGTGTCGCATTTTGAACCAG 57.315 40.909 0.00 0.00 0.00 4.00
4002 7150 5.106475 GGTTATAGTGTCGCATTTTGAACCA 60.106 40.000 0.00 0.00 34.17 3.67
4003 7151 5.106475 TGGTTATAGTGTCGCATTTTGAACC 60.106 40.000 0.00 0.00 34.51 3.62
4004 7152 5.933790 TGGTTATAGTGTCGCATTTTGAAC 58.066 37.500 0.00 0.00 0.00 3.18
4005 7153 6.205853 AGTTGGTTATAGTGTCGCATTTTGAA 59.794 34.615 0.00 0.00 0.00 2.69
4006 7154 5.703592 AGTTGGTTATAGTGTCGCATTTTGA 59.296 36.000 0.00 0.00 0.00 2.69
4007 7155 5.938322 AGTTGGTTATAGTGTCGCATTTTG 58.062 37.500 0.00 0.00 0.00 2.44
4008 7156 6.378582 CAAGTTGGTTATAGTGTCGCATTTT 58.621 36.000 0.00 0.00 0.00 1.82
4009 7157 5.938322 CAAGTTGGTTATAGTGTCGCATTT 58.062 37.500 0.00 0.00 0.00 2.32
4010 7158 5.545658 CAAGTTGGTTATAGTGTCGCATT 57.454 39.130 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.