Multiple sequence alignment - TraesCS1A01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G265800 chr1A 100.000 2422 0 0 1 2422 461355819 461358240 0.000000e+00 4473.0
1 TraesCS1A01G265800 chr1A 80.619 485 51 26 635 1097 461337298 461337761 3.860000e-88 335.0
2 TraesCS1A01G265800 chr1A 80.196 409 45 24 1205 1601 461337830 461338214 8.530000e-70 274.0
3 TraesCS1A01G265800 chr1A 75.862 203 31 15 884 1079 461351246 461351437 1.190000e-13 87.9
4 TraesCS1A01G265800 chr1B 89.319 1835 111 46 642 2422 484365678 484367481 0.000000e+00 2224.0
5 TraesCS1A01G265800 chr1B 77.152 976 114 62 723 1663 484296985 484297886 1.310000e-127 466.0
6 TraesCS1A01G265800 chr1B 95.367 259 12 0 1221 1479 484147233 484147491 1.730000e-111 412.0
7 TraesCS1A01G265800 chr1B 95.367 259 12 0 1221 1479 484214220 484214478 1.730000e-111 412.0
8 TraesCS1A01G265800 chr1B 83.590 195 24 5 1 187 499195144 499194950 2.470000e-40 176.0
9 TraesCS1A01G265800 chr1D 91.618 1026 48 14 640 1647 361907272 361908277 0.000000e+00 1384.0
10 TraesCS1A01G265800 chr1D 90.419 835 53 10 1591 2422 361908267 361909077 0.000000e+00 1074.0
11 TraesCS1A01G265800 chr1D 93.811 307 18 1 189 494 52692472 52692166 6.100000e-126 460.0
12 TraesCS1A01G265800 chr1D 82.292 384 39 16 723 1097 361802318 361802681 3.030000e-79 305.0
13 TraesCS1A01G265800 chr1D 77.637 474 66 23 1205 1663 361802745 361803193 4.000000e-63 252.0
14 TraesCS1A01G265800 chr5D 94.463 307 13 2 189 491 281024473 281024779 1.010000e-128 470.0
15 TraesCS1A01G265800 chr3D 93.891 311 18 1 189 498 112101495 112101805 3.650000e-128 468.0
16 TraesCS1A01G265800 chr3D 83.249 197 21 4 1 187 601937481 601937287 1.150000e-38 171.0
17 TraesCS1A01G265800 chr4D 94.098 305 17 1 188 491 384483235 384482931 1.700000e-126 462.0
18 TraesCS1A01G265800 chr4D 94.059 303 18 0 189 491 81215907 81216209 6.100000e-126 460.0
19 TraesCS1A01G265800 chr4A 93.060 317 21 1 182 497 153665660 153665344 1.700000e-126 462.0
20 TraesCS1A01G265800 chr7A 93.528 309 20 0 189 497 48106743 48106435 6.100000e-126 460.0
21 TraesCS1A01G265800 chr7A 93.791 306 19 0 189 494 138976987 138976682 6.100000e-126 460.0
22 TraesCS1A01G265800 chr5A 93.528 309 20 0 189 497 640692059 640691751 6.100000e-126 460.0
23 TraesCS1A01G265800 chr3A 88.987 227 11 5 807 1027 584927328 584927546 3.970000e-68 268.0
24 TraesCS1A01G265800 chr3A 85.787 197 15 8 1 187 669975010 669975203 1.900000e-46 196.0
25 TraesCS1A01G265800 chr3A 84.456 193 24 4 1 187 691454226 691454034 4.110000e-43 185.0
26 TraesCS1A01G265800 chr2A 86.802 197 13 6 1 187 459138474 459138667 8.780000e-50 207.0
27 TraesCS1A01G265800 chr7D 84.848 198 16 10 1 187 17173675 17173481 1.140000e-43 187.0
28 TraesCS1A01G265800 chr5B 84.615 195 17 9 3 187 689558960 689558769 5.320000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G265800 chr1A 461355819 461358240 2421 False 4473.0 4473 100.0000 1 2422 1 chr1A.!!$F2 2421
1 TraesCS1A01G265800 chr1A 461337298 461338214 916 False 304.5 335 80.4075 635 1601 2 chr1A.!!$F3 966
2 TraesCS1A01G265800 chr1B 484365678 484367481 1803 False 2224.0 2224 89.3190 642 2422 1 chr1B.!!$F4 1780
3 TraesCS1A01G265800 chr1B 484296985 484297886 901 False 466.0 466 77.1520 723 1663 1 chr1B.!!$F3 940
4 TraesCS1A01G265800 chr1D 361907272 361909077 1805 False 1229.0 1384 91.0185 640 2422 2 chr1D.!!$F2 1782
5 TraesCS1A01G265800 chr1D 361802318 361803193 875 False 278.5 305 79.9645 723 1663 2 chr1D.!!$F1 940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.031994 GCGCAAACTCACCCATGTTT 59.968 50.0 0.3 0.0 36.91 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2303 1.014352 AATTCAGCCCGTTCGTATGC 58.986 50.0 0.0 0.0 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.163027 CGCTCTAAACTAGCCTATTTTACAC 57.837 40.000 0.00 0.00 36.60 2.90
25 26 6.074994 CGCTCTAAACTAGCCTATTTTACACG 60.075 42.308 0.00 0.00 36.60 4.49
26 27 6.292221 GCTCTAAACTAGCCTATTTTACACGC 60.292 42.308 0.00 0.00 33.73 5.34
27 28 4.852609 AAACTAGCCTATTTTACACGCG 57.147 40.909 3.53 3.53 0.00 6.01
28 29 3.788333 ACTAGCCTATTTTACACGCGA 57.212 42.857 15.93 0.00 0.00 5.87
29 30 4.114058 ACTAGCCTATTTTACACGCGAA 57.886 40.909 15.93 0.00 0.00 4.70
30 31 4.110482 ACTAGCCTATTTTACACGCGAAG 58.890 43.478 15.93 7.57 0.00 3.79
31 32 2.968675 AGCCTATTTTACACGCGAAGT 58.031 42.857 15.93 14.00 0.00 3.01
41 42 2.480555 CGCGAAGTGTTGCATCCC 59.519 61.111 0.00 0.00 0.00 3.85
42 43 2.324330 CGCGAAGTGTTGCATCCCA 61.324 57.895 0.00 0.00 0.00 4.37
43 44 1.851021 CGCGAAGTGTTGCATCCCAA 61.851 55.000 0.00 0.00 0.00 4.12
54 55 3.507162 TGCATCCCAACTCAAGAAAGA 57.493 42.857 0.00 0.00 0.00 2.52
55 56 3.831323 TGCATCCCAACTCAAGAAAGAA 58.169 40.909 0.00 0.00 0.00 2.52
56 57 4.214310 TGCATCCCAACTCAAGAAAGAAA 58.786 39.130 0.00 0.00 0.00 2.52
57 58 4.279169 TGCATCCCAACTCAAGAAAGAAAG 59.721 41.667 0.00 0.00 0.00 2.62
58 59 4.279420 GCATCCCAACTCAAGAAAGAAAGT 59.721 41.667 0.00 0.00 0.00 2.66
59 60 5.766222 CATCCCAACTCAAGAAAGAAAGTG 58.234 41.667 0.00 0.00 0.00 3.16
60 61 4.855340 TCCCAACTCAAGAAAGAAAGTGT 58.145 39.130 0.00 0.00 0.00 3.55
61 62 4.640201 TCCCAACTCAAGAAAGAAAGTGTG 59.360 41.667 0.00 0.00 0.00 3.82
62 63 4.354587 CCAACTCAAGAAAGAAAGTGTGC 58.645 43.478 0.00 0.00 0.00 4.57
63 64 4.096984 CCAACTCAAGAAAGAAAGTGTGCT 59.903 41.667 0.00 0.00 0.00 4.40
64 65 5.393461 CCAACTCAAGAAAGAAAGTGTGCTT 60.393 40.000 0.00 0.00 36.30 3.91
65 66 5.491635 ACTCAAGAAAGAAAGTGTGCTTC 57.508 39.130 0.00 0.00 33.01 3.86
66 67 4.034510 ACTCAAGAAAGAAAGTGTGCTTCG 59.965 41.667 0.00 0.00 33.01 3.79
67 68 4.188462 TCAAGAAAGAAAGTGTGCTTCGA 58.812 39.130 0.00 0.00 33.01 3.71
68 69 4.034048 TCAAGAAAGAAAGTGTGCTTCGAC 59.966 41.667 0.00 0.00 33.01 4.20
69 70 2.540101 AGAAAGAAAGTGTGCTTCGACG 59.460 45.455 0.00 0.00 33.01 5.12
70 71 1.217882 AAGAAAGTGTGCTTCGACGG 58.782 50.000 0.00 0.00 33.01 4.79
71 72 0.387929 AGAAAGTGTGCTTCGACGGA 59.612 50.000 0.00 0.00 33.01 4.69
72 73 1.202486 AGAAAGTGTGCTTCGACGGAA 60.202 47.619 0.00 0.00 33.01 4.30
73 74 0.935196 AAAGTGTGCTTCGACGGAAC 59.065 50.000 0.00 0.00 33.01 3.62
74 75 0.179094 AAGTGTGCTTCGACGGAACA 60.179 50.000 0.00 0.00 0.00 3.18
75 76 0.033504 AGTGTGCTTCGACGGAACAT 59.966 50.000 2.23 0.00 0.00 2.71
76 77 0.438830 GTGTGCTTCGACGGAACATC 59.561 55.000 2.23 0.00 0.00 3.06
77 78 0.032815 TGTGCTTCGACGGAACATCA 59.967 50.000 0.00 0.00 0.00 3.07
78 79 1.337728 TGTGCTTCGACGGAACATCAT 60.338 47.619 0.00 0.00 0.00 2.45
79 80 1.732259 GTGCTTCGACGGAACATCATT 59.268 47.619 0.00 0.00 0.00 2.57
80 81 2.927477 GTGCTTCGACGGAACATCATTA 59.073 45.455 0.00 0.00 0.00 1.90
81 82 3.000322 GTGCTTCGACGGAACATCATTAG 60.000 47.826 0.00 0.00 0.00 1.73
82 83 2.033662 GCTTCGACGGAACATCATTAGC 60.034 50.000 0.00 0.00 0.00 3.09
83 84 3.448686 CTTCGACGGAACATCATTAGCT 58.551 45.455 0.00 0.00 0.00 3.32
84 85 3.079960 TCGACGGAACATCATTAGCTC 57.920 47.619 0.00 0.00 0.00 4.09
85 86 2.688446 TCGACGGAACATCATTAGCTCT 59.312 45.455 0.00 0.00 0.00 4.09
86 87 3.046390 CGACGGAACATCATTAGCTCTC 58.954 50.000 0.00 0.00 0.00 3.20
87 88 3.046390 GACGGAACATCATTAGCTCTCG 58.954 50.000 0.00 0.00 0.00 4.04
88 89 2.223829 ACGGAACATCATTAGCTCTCGG 60.224 50.000 0.00 0.00 0.00 4.63
89 90 2.223829 CGGAACATCATTAGCTCTCGGT 60.224 50.000 0.00 0.00 0.00 4.69
90 91 3.738281 CGGAACATCATTAGCTCTCGGTT 60.738 47.826 0.00 0.00 0.00 4.44
91 92 4.499188 CGGAACATCATTAGCTCTCGGTTA 60.499 45.833 0.00 0.00 0.00 2.85
92 93 4.745620 GGAACATCATTAGCTCTCGGTTAC 59.254 45.833 0.00 0.00 0.00 2.50
93 94 5.452077 GGAACATCATTAGCTCTCGGTTACT 60.452 44.000 0.00 0.00 0.00 2.24
94 95 4.938080 ACATCATTAGCTCTCGGTTACTG 58.062 43.478 0.00 0.00 0.00 2.74
95 96 3.438297 TCATTAGCTCTCGGTTACTGC 57.562 47.619 0.00 0.00 0.00 4.40
96 97 2.758423 TCATTAGCTCTCGGTTACTGCA 59.242 45.455 0.00 0.00 0.00 4.41
97 98 2.649331 TTAGCTCTCGGTTACTGCAC 57.351 50.000 0.00 0.00 0.00 4.57
98 99 0.815734 TAGCTCTCGGTTACTGCACC 59.184 55.000 0.00 0.00 0.00 5.01
99 100 1.448013 GCTCTCGGTTACTGCACCC 60.448 63.158 0.00 0.00 32.48 4.61
100 101 1.972198 CTCTCGGTTACTGCACCCA 59.028 57.895 0.00 0.00 32.48 4.51
101 102 0.389948 CTCTCGGTTACTGCACCCAC 60.390 60.000 0.00 0.00 32.48 4.61
102 103 1.375523 CTCGGTTACTGCACCCACC 60.376 63.158 0.00 0.00 32.48 4.61
103 104 2.359478 CGGTTACTGCACCCACCC 60.359 66.667 0.00 0.00 32.48 4.61
104 105 2.840576 GGTTACTGCACCCACCCA 59.159 61.111 0.00 0.00 0.00 4.51
105 106 1.602605 GGTTACTGCACCCACCCAC 60.603 63.158 0.00 0.00 0.00 4.61
106 107 1.964373 GTTACTGCACCCACCCACG 60.964 63.158 0.00 0.00 0.00 4.94
107 108 2.445119 TTACTGCACCCACCCACGT 61.445 57.895 0.00 0.00 0.00 4.49
108 109 2.386064 TTACTGCACCCACCCACGTC 62.386 60.000 0.00 0.00 0.00 4.34
111 112 4.922026 GCACCCACCCACGTCGTT 62.922 66.667 0.00 0.00 0.00 3.85
112 113 2.970324 CACCCACCCACGTCGTTG 60.970 66.667 0.00 0.00 0.00 4.10
113 114 3.472726 ACCCACCCACGTCGTTGT 61.473 61.111 0.00 0.00 0.00 3.32
114 115 2.203098 CCCACCCACGTCGTTGTT 60.203 61.111 0.00 0.00 0.00 2.83
115 116 1.820481 CCCACCCACGTCGTTGTTT 60.820 57.895 0.00 0.00 0.00 2.83
116 117 1.644913 CCACCCACGTCGTTGTTTC 59.355 57.895 0.00 0.00 0.00 2.78
117 118 1.090625 CCACCCACGTCGTTGTTTCA 61.091 55.000 0.00 0.00 0.00 2.69
118 119 0.941542 CACCCACGTCGTTGTTTCAT 59.058 50.000 0.00 0.00 0.00 2.57
119 120 1.070175 CACCCACGTCGTTGTTTCATC 60.070 52.381 0.00 0.00 0.00 2.92
120 121 1.222300 CCCACGTCGTTGTTTCATCA 58.778 50.000 0.00 0.00 0.00 3.07
121 122 1.804151 CCCACGTCGTTGTTTCATCAT 59.196 47.619 0.00 0.00 0.00 2.45
122 123 2.997303 CCCACGTCGTTGTTTCATCATA 59.003 45.455 0.00 0.00 0.00 2.15
123 124 3.181524 CCCACGTCGTTGTTTCATCATAC 60.182 47.826 0.00 0.00 0.00 2.39
124 125 3.430556 CCACGTCGTTGTTTCATCATACA 59.569 43.478 0.00 0.00 0.00 2.29
125 126 4.434198 CCACGTCGTTGTTTCATCATACAG 60.434 45.833 0.00 0.00 0.00 2.74
126 127 3.678072 ACGTCGTTGTTTCATCATACAGG 59.322 43.478 0.00 0.00 0.00 4.00
127 128 3.483574 CGTCGTTGTTTCATCATACAGGC 60.484 47.826 0.00 0.00 0.00 4.85
128 129 3.006940 TCGTTGTTTCATCATACAGGCC 58.993 45.455 0.00 0.00 0.00 5.19
129 130 2.097466 CGTTGTTTCATCATACAGGCCC 59.903 50.000 0.00 0.00 0.00 5.80
130 131 3.088532 GTTGTTTCATCATACAGGCCCA 58.911 45.455 0.00 0.00 0.00 5.36
131 132 2.722094 TGTTTCATCATACAGGCCCAC 58.278 47.619 0.00 0.00 0.00 4.61
132 133 1.670811 GTTTCATCATACAGGCCCACG 59.329 52.381 0.00 0.00 0.00 4.94
133 134 0.908910 TTCATCATACAGGCCCACGT 59.091 50.000 0.00 0.00 0.00 4.49
134 135 0.464036 TCATCATACAGGCCCACGTC 59.536 55.000 0.00 0.00 0.00 4.34
135 136 0.532862 CATCATACAGGCCCACGTCC 60.533 60.000 0.00 0.00 0.00 4.79
136 137 0.980754 ATCATACAGGCCCACGTCCA 60.981 55.000 0.00 0.00 0.00 4.02
137 138 1.449601 CATACAGGCCCACGTCCAC 60.450 63.158 0.00 0.00 0.00 4.02
138 139 1.916273 ATACAGGCCCACGTCCACA 60.916 57.895 0.00 0.00 0.00 4.17
139 140 1.271840 ATACAGGCCCACGTCCACAT 61.272 55.000 0.00 0.00 0.00 3.21
140 141 2.178876 TACAGGCCCACGTCCACATG 62.179 60.000 0.00 0.00 0.00 3.21
141 142 4.722700 AGGCCCACGTCCACATGC 62.723 66.667 0.00 0.00 0.00 4.06
143 144 4.722700 GCCCACGTCCACATGCCT 62.723 66.667 0.00 0.00 0.00 4.75
144 145 2.747460 CCCACGTCCACATGCCTG 60.747 66.667 0.00 0.00 0.00 4.85
145 146 2.032528 CCACGTCCACATGCCTGT 59.967 61.111 0.00 0.00 35.44 4.00
146 147 2.034879 CCACGTCCACATGCCTGTC 61.035 63.158 0.00 0.00 31.62 3.51
147 148 1.004560 CACGTCCACATGCCTGTCT 60.005 57.895 0.00 0.00 31.62 3.41
148 149 0.603707 CACGTCCACATGCCTGTCTT 60.604 55.000 0.00 0.00 31.62 3.01
149 150 0.108585 ACGTCCACATGCCTGTCTTT 59.891 50.000 0.00 0.00 31.62 2.52
150 151 1.238439 CGTCCACATGCCTGTCTTTT 58.762 50.000 0.00 0.00 31.62 2.27
151 152 1.197721 CGTCCACATGCCTGTCTTTTC 59.802 52.381 0.00 0.00 31.62 2.29
152 153 1.541588 GTCCACATGCCTGTCTTTTCC 59.458 52.381 0.00 0.00 31.62 3.13
153 154 0.890683 CCACATGCCTGTCTTTTCCC 59.109 55.000 0.00 0.00 31.62 3.97
154 155 1.548582 CCACATGCCTGTCTTTTCCCT 60.549 52.381 0.00 0.00 31.62 4.20
155 156 1.542915 CACATGCCTGTCTTTTCCCTG 59.457 52.381 0.00 0.00 31.62 4.45
156 157 0.529378 CATGCCTGTCTTTTCCCTGC 59.471 55.000 0.00 0.00 0.00 4.85
157 158 0.962356 ATGCCTGTCTTTTCCCTGCG 60.962 55.000 0.00 0.00 0.00 5.18
158 159 2.982744 GCCTGTCTTTTCCCTGCGC 61.983 63.158 0.00 0.00 0.00 6.09
159 160 1.600636 CCTGTCTTTTCCCTGCGCA 60.601 57.895 10.98 10.98 0.00 6.09
160 161 1.172180 CCTGTCTTTTCCCTGCGCAA 61.172 55.000 13.05 0.00 0.00 4.85
161 162 0.667993 CTGTCTTTTCCCTGCGCAAA 59.332 50.000 13.05 0.00 0.00 3.68
162 163 0.383949 TGTCTTTTCCCTGCGCAAAC 59.616 50.000 13.05 0.45 0.00 2.93
163 164 0.668535 GTCTTTTCCCTGCGCAAACT 59.331 50.000 13.05 0.00 0.00 2.66
164 165 0.951558 TCTTTTCCCTGCGCAAACTC 59.048 50.000 13.05 0.00 0.00 3.01
165 166 0.667993 CTTTTCCCTGCGCAAACTCA 59.332 50.000 13.05 0.00 0.00 3.41
166 167 0.383949 TTTTCCCTGCGCAAACTCAC 59.616 50.000 13.05 0.00 0.00 3.51
167 168 1.452145 TTTCCCTGCGCAAACTCACC 61.452 55.000 13.05 0.00 0.00 4.02
168 169 3.365265 CCCTGCGCAAACTCACCC 61.365 66.667 13.05 0.00 0.00 4.61
169 170 2.594303 CCTGCGCAAACTCACCCA 60.594 61.111 13.05 0.00 0.00 4.51
170 171 1.973281 CCTGCGCAAACTCACCCAT 60.973 57.895 13.05 0.00 0.00 4.00
171 172 1.210931 CTGCGCAAACTCACCCATG 59.789 57.895 13.05 0.00 0.00 3.66
172 173 1.518056 CTGCGCAAACTCACCCATGT 61.518 55.000 13.05 0.00 0.00 3.21
173 174 1.106351 TGCGCAAACTCACCCATGTT 61.106 50.000 8.16 0.00 0.00 2.71
174 175 0.031994 GCGCAAACTCACCCATGTTT 59.968 50.000 0.30 0.00 36.91 2.83
175 176 1.930371 GCGCAAACTCACCCATGTTTC 60.930 52.381 0.30 0.00 34.60 2.78
176 177 1.335872 CGCAAACTCACCCATGTTTCC 60.336 52.381 0.00 0.00 34.60 3.13
177 178 1.686052 GCAAACTCACCCATGTTTCCA 59.314 47.619 0.00 0.00 34.60 3.53
178 179 2.545742 GCAAACTCACCCATGTTTCCAC 60.546 50.000 0.00 0.00 34.60 4.02
179 180 2.692557 CAAACTCACCCATGTTTCCACA 59.307 45.455 0.00 0.00 34.60 4.17
180 181 2.746279 ACTCACCCATGTTTCCACAA 57.254 45.000 0.00 0.00 36.16 3.33
181 182 3.243359 ACTCACCCATGTTTCCACAAT 57.757 42.857 0.00 0.00 36.16 2.71
182 183 3.157087 ACTCACCCATGTTTCCACAATC 58.843 45.455 0.00 0.00 36.16 2.67
183 184 3.156293 CTCACCCATGTTTCCACAATCA 58.844 45.455 0.00 0.00 36.16 2.57
184 185 3.765511 CTCACCCATGTTTCCACAATCAT 59.234 43.478 0.00 0.00 36.16 2.45
185 186 4.158786 TCACCCATGTTTCCACAATCATT 58.841 39.130 0.00 0.00 36.16 2.57
186 187 4.021280 TCACCCATGTTTCCACAATCATTG 60.021 41.667 0.00 0.00 36.16 2.82
187 188 3.261390 ACCCATGTTTCCACAATCATTGG 59.739 43.478 1.58 0.00 36.16 3.16
188 189 3.369681 CCCATGTTTCCACAATCATTGGG 60.370 47.826 1.58 0.00 36.16 4.12
194 195 3.602104 CACAATCATTGGGGCCTCT 57.398 52.632 3.07 0.00 34.12 3.69
195 196 1.856629 CACAATCATTGGGGCCTCTT 58.143 50.000 3.07 0.00 34.12 2.85
196 197 2.181975 CACAATCATTGGGGCCTCTTT 58.818 47.619 3.07 0.00 34.12 2.52
197 198 2.568509 CACAATCATTGGGGCCTCTTTT 59.431 45.455 3.07 0.00 34.12 2.27
198 199 2.568509 ACAATCATTGGGGCCTCTTTTG 59.431 45.455 3.07 3.14 34.12 2.44
199 200 1.870064 ATCATTGGGGCCTCTTTTGG 58.130 50.000 3.07 0.00 0.00 3.28
200 201 0.486879 TCATTGGGGCCTCTTTTGGT 59.513 50.000 3.07 0.00 0.00 3.67
201 202 1.132881 TCATTGGGGCCTCTTTTGGTT 60.133 47.619 3.07 0.00 0.00 3.67
202 203 1.699083 CATTGGGGCCTCTTTTGGTTT 59.301 47.619 3.07 0.00 0.00 3.27
203 204 1.127343 TTGGGGCCTCTTTTGGTTTG 58.873 50.000 3.07 0.00 0.00 2.93
204 205 0.263172 TGGGGCCTCTTTTGGTTTGA 59.737 50.000 3.07 0.00 0.00 2.69
205 206 1.343478 TGGGGCCTCTTTTGGTTTGAA 60.343 47.619 3.07 0.00 0.00 2.69
206 207 1.344438 GGGGCCTCTTTTGGTTTGAAG 59.656 52.381 0.84 0.00 0.00 3.02
207 208 1.344438 GGGCCTCTTTTGGTTTGAAGG 59.656 52.381 0.84 0.00 0.00 3.46
208 209 2.316108 GGCCTCTTTTGGTTTGAAGGA 58.684 47.619 0.00 0.00 0.00 3.36
209 210 2.698274 GGCCTCTTTTGGTTTGAAGGAA 59.302 45.455 0.00 0.00 0.00 3.36
210 211 3.324846 GGCCTCTTTTGGTTTGAAGGAAT 59.675 43.478 0.00 0.00 0.00 3.01
211 212 4.202357 GGCCTCTTTTGGTTTGAAGGAATT 60.202 41.667 0.00 0.00 0.00 2.17
212 213 5.368145 GCCTCTTTTGGTTTGAAGGAATTT 58.632 37.500 0.00 0.00 0.00 1.82
213 214 5.822519 GCCTCTTTTGGTTTGAAGGAATTTT 59.177 36.000 0.00 0.00 0.00 1.82
214 215 6.238456 GCCTCTTTTGGTTTGAAGGAATTTTG 60.238 38.462 0.00 0.00 0.00 2.44
215 216 6.823182 CCTCTTTTGGTTTGAAGGAATTTTGT 59.177 34.615 0.00 0.00 0.00 2.83
216 217 7.984617 CCTCTTTTGGTTTGAAGGAATTTTGTA 59.015 33.333 0.00 0.00 0.00 2.41
217 218 8.940768 TCTTTTGGTTTGAAGGAATTTTGTAG 57.059 30.769 0.00 0.00 0.00 2.74
218 219 8.754080 TCTTTTGGTTTGAAGGAATTTTGTAGA 58.246 29.630 0.00 0.00 0.00 2.59
219 220 9.377312 CTTTTGGTTTGAAGGAATTTTGTAGAA 57.623 29.630 0.00 0.00 0.00 2.10
220 221 9.726438 TTTTGGTTTGAAGGAATTTTGTAGAAA 57.274 25.926 0.00 0.00 0.00 2.52
221 222 9.898152 TTTGGTTTGAAGGAATTTTGTAGAAAT 57.102 25.926 0.00 0.00 0.00 2.17
222 223 9.898152 TTGGTTTGAAGGAATTTTGTAGAAATT 57.102 25.926 0.00 0.00 32.98 1.82
223 224 9.898152 TGGTTTGAAGGAATTTTGTAGAAATTT 57.102 25.926 0.00 0.00 30.68 1.82
226 227 9.810545 TTTGAAGGAATTTTGTAGAAATTTCGT 57.189 25.926 12.42 10.05 34.41 3.85
229 230 9.556030 GAAGGAATTTTGTAGAAATTTCGTAGG 57.444 33.333 12.42 0.00 34.41 3.18
230 231 8.051901 AGGAATTTTGTAGAAATTTCGTAGGG 57.948 34.615 12.42 0.00 34.41 3.53
231 232 7.668469 AGGAATTTTGTAGAAATTTCGTAGGGT 59.332 33.333 12.42 0.00 34.41 4.34
232 233 8.949177 GGAATTTTGTAGAAATTTCGTAGGGTA 58.051 33.333 12.42 0.00 34.41 3.69
233 234 9.983804 GAATTTTGTAGAAATTTCGTAGGGTAG 57.016 33.333 12.42 0.00 30.68 3.18
234 235 7.910441 TTTTGTAGAAATTTCGTAGGGTAGG 57.090 36.000 12.42 0.00 0.00 3.18
235 236 6.855763 TTGTAGAAATTTCGTAGGGTAGGA 57.144 37.500 12.42 0.00 0.00 2.94
236 237 7.427989 TTGTAGAAATTTCGTAGGGTAGGAT 57.572 36.000 12.42 0.00 0.00 3.24
237 238 7.427989 TGTAGAAATTTCGTAGGGTAGGATT 57.572 36.000 12.42 0.00 0.00 3.01
238 239 7.854337 TGTAGAAATTTCGTAGGGTAGGATTT 58.146 34.615 12.42 0.00 0.00 2.17
239 240 8.323567 TGTAGAAATTTCGTAGGGTAGGATTTT 58.676 33.333 12.42 0.00 0.00 1.82
240 241 9.170734 GTAGAAATTTCGTAGGGTAGGATTTTT 57.829 33.333 12.42 0.00 0.00 1.94
242 243 9.916360 AGAAATTTCGTAGGGTAGGATTTTTAT 57.084 29.630 12.42 0.00 0.00 1.40
245 246 9.788889 AATTTCGTAGGGTAGGATTTTTATAGG 57.211 33.333 0.00 0.00 0.00 2.57
246 247 8.551682 TTTCGTAGGGTAGGATTTTTATAGGA 57.448 34.615 0.00 0.00 0.00 2.94
247 248 8.551682 TTCGTAGGGTAGGATTTTTATAGGAA 57.448 34.615 0.00 0.00 0.00 3.36
248 249 8.551682 TCGTAGGGTAGGATTTTTATAGGAAA 57.448 34.615 0.00 0.00 0.00 3.13
249 250 8.991275 TCGTAGGGTAGGATTTTTATAGGAAAA 58.009 33.333 0.00 0.00 33.46 2.29
250 251 9.617523 CGTAGGGTAGGATTTTTATAGGAAAAA 57.382 33.333 0.00 0.00 32.75 1.94
272 273 8.885693 AAAAATCCTATAGAGCTCTTTGGTTT 57.114 30.769 23.84 17.74 0.00 3.27
273 274 7.872113 AAATCCTATAGAGCTCTTTGGTTTG 57.128 36.000 23.84 3.88 0.00 2.93
274 275 6.567602 ATCCTATAGAGCTCTTTGGTTTGT 57.432 37.500 23.84 7.32 0.00 2.83
275 276 7.676683 ATCCTATAGAGCTCTTTGGTTTGTA 57.323 36.000 23.84 0.00 0.00 2.41
276 277 7.113658 TCCTATAGAGCTCTTTGGTTTGTAG 57.886 40.000 23.84 7.55 0.00 2.74
277 278 6.098409 TCCTATAGAGCTCTTTGGTTTGTAGG 59.902 42.308 23.84 16.03 40.77 3.18
278 279 6.098409 CCTATAGAGCTCTTTGGTTTGTAGGA 59.902 42.308 23.84 0.00 41.41 2.94
279 280 4.706842 AGAGCTCTTTGGTTTGTAGGAA 57.293 40.909 11.45 0.00 0.00 3.36
280 281 5.248380 AGAGCTCTTTGGTTTGTAGGAAT 57.752 39.130 11.45 0.00 0.00 3.01
281 282 5.006386 AGAGCTCTTTGGTTTGTAGGAATG 58.994 41.667 11.45 0.00 0.00 2.67
282 283 4.985538 AGCTCTTTGGTTTGTAGGAATGA 58.014 39.130 0.00 0.00 0.00 2.57
283 284 5.385198 AGCTCTTTGGTTTGTAGGAATGAA 58.615 37.500 0.00 0.00 0.00 2.57
284 285 5.833131 AGCTCTTTGGTTTGTAGGAATGAAA 59.167 36.000 0.00 0.00 0.00 2.69
285 286 6.494835 AGCTCTTTGGTTTGTAGGAATGAAAT 59.505 34.615 0.00 0.00 0.00 2.17
286 287 6.808704 GCTCTTTGGTTTGTAGGAATGAAATC 59.191 38.462 0.00 0.00 0.00 2.17
287 288 7.227049 TCTTTGGTTTGTAGGAATGAAATCC 57.773 36.000 0.00 0.00 39.96 3.01
301 302 6.601217 GGAATGAAATCCTATTCCTATGGAGC 59.399 42.308 8.37 0.00 45.66 4.70
302 303 6.708885 ATGAAATCCTATTCCTATGGAGCA 57.291 37.500 0.00 0.00 32.95 4.26
303 304 6.514012 TGAAATCCTATTCCTATGGAGCAA 57.486 37.500 0.00 0.00 32.95 3.91
304 305 6.910191 TGAAATCCTATTCCTATGGAGCAAA 58.090 36.000 0.00 0.00 32.95 3.68
305 306 7.529555 TGAAATCCTATTCCTATGGAGCAAAT 58.470 34.615 0.00 0.00 32.95 2.32
306 307 7.667219 TGAAATCCTATTCCTATGGAGCAAATC 59.333 37.037 0.00 0.00 32.95 2.17
307 308 6.966637 ATCCTATTCCTATGGAGCAAATCT 57.033 37.500 0.00 0.00 32.95 2.40
308 309 6.770286 TCCTATTCCTATGGAGCAAATCTT 57.230 37.500 0.00 0.00 31.21 2.40
309 310 6.773638 TCCTATTCCTATGGAGCAAATCTTC 58.226 40.000 0.00 0.00 31.21 2.87
310 311 5.942826 CCTATTCCTATGGAGCAAATCTTCC 59.057 44.000 0.00 0.00 31.21 3.46
311 312 5.659849 ATTCCTATGGAGCAAATCTTCCT 57.340 39.130 0.00 0.00 31.21 3.36
312 313 6.770286 ATTCCTATGGAGCAAATCTTCCTA 57.230 37.500 0.00 0.00 31.21 2.94
313 314 6.770286 TTCCTATGGAGCAAATCTTCCTAT 57.230 37.500 0.00 0.00 31.21 2.57
314 315 6.365970 TCCTATGGAGCAAATCTTCCTATC 57.634 41.667 0.00 0.00 0.00 2.08
315 316 5.249393 TCCTATGGAGCAAATCTTCCTATCC 59.751 44.000 0.00 0.00 0.00 2.59
316 317 5.250313 CCTATGGAGCAAATCTTCCTATCCT 59.750 44.000 0.00 0.00 0.00 3.24
317 318 5.659849 ATGGAGCAAATCTTCCTATCCTT 57.340 39.130 0.00 0.00 0.00 3.36
318 319 5.041191 TGGAGCAAATCTTCCTATCCTTC 57.959 43.478 0.00 0.00 0.00 3.46
319 320 4.474651 TGGAGCAAATCTTCCTATCCTTCA 59.525 41.667 0.00 0.00 0.00 3.02
320 321 4.819088 GGAGCAAATCTTCCTATCCTTCAC 59.181 45.833 0.00 0.00 0.00 3.18
321 322 5.431765 GAGCAAATCTTCCTATCCTTCACA 58.568 41.667 0.00 0.00 0.00 3.58
322 323 6.011122 AGCAAATCTTCCTATCCTTCACAT 57.989 37.500 0.00 0.00 0.00 3.21
323 324 6.430007 AGCAAATCTTCCTATCCTTCACATT 58.570 36.000 0.00 0.00 0.00 2.71
324 325 6.894103 AGCAAATCTTCCTATCCTTCACATTT 59.106 34.615 0.00 0.00 0.00 2.32
325 326 7.067981 AGCAAATCTTCCTATCCTTCACATTTC 59.932 37.037 0.00 0.00 0.00 2.17
326 327 7.148018 GCAAATCTTCCTATCCTTCACATTTCA 60.148 37.037 0.00 0.00 0.00 2.69
327 328 8.910944 CAAATCTTCCTATCCTTCACATTTCAT 58.089 33.333 0.00 0.00 0.00 2.57
329 330 9.790344 AATCTTCCTATCCTTCACATTTCATAG 57.210 33.333 0.00 0.00 0.00 2.23
330 331 7.739825 TCTTCCTATCCTTCACATTTCATAGG 58.260 38.462 0.00 0.00 35.93 2.57
331 332 7.568738 TCTTCCTATCCTTCACATTTCATAGGA 59.431 37.037 2.01 2.01 39.98 2.94
332 333 7.690454 TCCTATCCTTCACATTTCATAGGAA 57.310 36.000 3.47 0.00 39.17 3.36
333 334 8.101309 TCCTATCCTTCACATTTCATAGGAAA 57.899 34.615 4.85 4.85 46.36 3.13
334 335 8.556589 TCCTATCCTTCACATTTCATAGGAAAA 58.443 33.333 6.65 0.00 45.52 2.29
335 336 9.359653 CCTATCCTTCACATTTCATAGGAAAAT 57.640 33.333 6.65 0.00 45.52 1.82
361 362 8.934023 AAACATTAACCTAGACTCAATGGAAA 57.066 30.769 0.00 0.00 32.20 3.13
362 363 8.934023 AACATTAACCTAGACTCAATGGAAAA 57.066 30.769 0.00 0.00 32.20 2.29
363 364 8.934023 ACATTAACCTAGACTCAATGGAAAAA 57.066 30.769 0.00 0.00 32.20 1.94
398 399 6.795399 GTGAAACAAAGGACATCTCTTTTCA 58.205 36.000 0.00 0.00 36.32 2.69
399 400 7.428826 GTGAAACAAAGGACATCTCTTTTCAT 58.571 34.615 0.00 0.00 33.68 2.57
400 401 8.567948 GTGAAACAAAGGACATCTCTTTTCATA 58.432 33.333 0.00 0.00 33.68 2.15
401 402 9.300681 TGAAACAAAGGACATCTCTTTTCATAT 57.699 29.630 0.00 0.00 32.72 1.78
404 405 8.286191 ACAAAGGACATCTCTTTTCATATTCC 57.714 34.615 0.00 0.00 32.72 3.01
405 406 8.112183 ACAAAGGACATCTCTTTTCATATTCCT 58.888 33.333 0.00 0.00 32.72 3.36
406 407 9.618890 CAAAGGACATCTCTTTTCATATTCCTA 57.381 33.333 0.00 0.00 32.72 2.94
407 408 9.620259 AAAGGACATCTCTTTTCATATTCCTAC 57.380 33.333 0.00 0.00 31.11 3.18
408 409 8.560124 AGGACATCTCTTTTCATATTCCTACT 57.440 34.615 0.00 0.00 0.00 2.57
409 410 8.646900 AGGACATCTCTTTTCATATTCCTACTC 58.353 37.037 0.00 0.00 0.00 2.59
410 411 8.424918 GGACATCTCTTTTCATATTCCTACTCA 58.575 37.037 0.00 0.00 0.00 3.41
411 412 9.995003 GACATCTCTTTTCATATTCCTACTCAT 57.005 33.333 0.00 0.00 0.00 2.90
428 429 7.598189 CTACTCATAGGATTTGAGATGCATG 57.402 40.000 2.46 0.00 42.63 4.06
429 430 5.938279 ACTCATAGGATTTGAGATGCATGT 58.062 37.500 2.46 0.00 42.63 3.21
430 431 5.996513 ACTCATAGGATTTGAGATGCATGTC 59.003 40.000 16.63 16.63 42.63 3.06
431 432 5.932455 TCATAGGATTTGAGATGCATGTCA 58.068 37.500 21.70 21.70 0.00 3.58
432 433 6.540083 TCATAGGATTTGAGATGCATGTCAT 58.460 36.000 25.41 13.07 38.32 3.06
446 447 8.095937 GATGCATGTCATCTCATTTTCTATGA 57.904 34.615 2.46 0.00 46.29 2.15
447 448 7.255491 TGCATGTCATCTCATTTTCTATGAC 57.745 36.000 7.23 7.23 45.40 3.06
448 449 7.052248 TGCATGTCATCTCATTTTCTATGACT 58.948 34.615 13.59 0.19 45.40 3.41
449 450 7.555195 TGCATGTCATCTCATTTTCTATGACTT 59.445 33.333 13.59 6.42 45.40 3.01
450 451 8.404000 GCATGTCATCTCATTTTCTATGACTTT 58.596 33.333 13.59 1.75 45.40 2.66
453 454 9.730705 TGTCATCTCATTTTCTATGACTTTTCT 57.269 29.630 13.59 0.00 45.40 2.52
486 487 7.718334 AATTTTCCTACCCTATGAACCAAAG 57.282 36.000 0.00 0.00 0.00 2.77
487 488 4.855298 TTCCTACCCTATGAACCAAAGG 57.145 45.455 0.00 0.00 0.00 3.11
488 489 4.083080 TCCTACCCTATGAACCAAAGGA 57.917 45.455 0.00 0.00 31.64 3.36
489 490 4.037927 TCCTACCCTATGAACCAAAGGAG 58.962 47.826 0.00 0.00 31.64 3.69
490 491 3.136626 CCTACCCTATGAACCAAAGGAGG 59.863 52.174 0.00 0.00 31.64 4.30
491 492 2.644151 ACCCTATGAACCAAAGGAGGT 58.356 47.619 0.00 0.00 45.91 3.85
492 493 2.576648 ACCCTATGAACCAAAGGAGGTC 59.423 50.000 0.00 0.00 42.25 3.85
493 494 2.846827 CCCTATGAACCAAAGGAGGTCT 59.153 50.000 0.00 0.00 42.25 3.85
494 495 3.118223 CCCTATGAACCAAAGGAGGTCTC 60.118 52.174 0.00 0.00 42.25 3.36
495 496 3.519510 CCTATGAACCAAAGGAGGTCTCA 59.480 47.826 0.14 0.00 42.25 3.27
496 497 4.019321 CCTATGAACCAAAGGAGGTCTCAA 60.019 45.833 0.14 0.00 42.25 3.02
497 498 4.664688 ATGAACCAAAGGAGGTCTCAAT 57.335 40.909 0.14 0.00 42.25 2.57
498 499 3.754965 TGAACCAAAGGAGGTCTCAATG 58.245 45.455 0.14 0.00 42.25 2.82
499 500 2.206576 ACCAAAGGAGGTCTCAATGC 57.793 50.000 0.14 0.00 37.28 3.56
500 501 1.707427 ACCAAAGGAGGTCTCAATGCT 59.293 47.619 0.14 0.00 37.28 3.79
501 502 2.108952 ACCAAAGGAGGTCTCAATGCTT 59.891 45.455 0.14 0.00 37.28 3.91
502 503 2.490903 CCAAAGGAGGTCTCAATGCTTG 59.509 50.000 0.14 0.00 0.00 4.01
503 504 1.831580 AAGGAGGTCTCAATGCTTGC 58.168 50.000 0.14 0.00 0.00 4.01
504 505 0.990374 AGGAGGTCTCAATGCTTGCT 59.010 50.000 0.14 0.00 0.00 3.91
505 506 1.065564 AGGAGGTCTCAATGCTTGCTC 60.066 52.381 0.14 0.00 0.00 4.26
506 507 1.377536 GAGGTCTCAATGCTTGCTCC 58.622 55.000 0.00 0.00 0.00 4.70
507 508 0.694771 AGGTCTCAATGCTTGCTCCA 59.305 50.000 0.00 0.00 0.00 3.86
508 509 1.074405 AGGTCTCAATGCTTGCTCCAA 59.926 47.619 0.00 0.00 0.00 3.53
509 510 1.200948 GGTCTCAATGCTTGCTCCAAC 59.799 52.381 0.00 0.00 0.00 3.77
510 511 1.881973 GTCTCAATGCTTGCTCCAACA 59.118 47.619 0.00 0.00 0.00 3.33
511 512 2.490903 GTCTCAATGCTTGCTCCAACAT 59.509 45.455 0.00 0.00 0.00 2.71
512 513 2.751259 TCTCAATGCTTGCTCCAACATC 59.249 45.455 0.00 0.00 0.00 3.06
513 514 2.490509 CTCAATGCTTGCTCCAACATCA 59.509 45.455 0.00 0.00 0.00 3.07
514 515 3.093814 TCAATGCTTGCTCCAACATCAT 58.906 40.909 0.00 0.00 0.00 2.45
515 516 3.119280 TCAATGCTTGCTCCAACATCATG 60.119 43.478 0.00 0.00 0.00 3.07
516 517 2.203470 TGCTTGCTCCAACATCATGA 57.797 45.000 0.00 0.00 0.00 3.07
517 518 2.730382 TGCTTGCTCCAACATCATGAT 58.270 42.857 1.18 1.18 0.00 2.45
518 519 3.093814 TGCTTGCTCCAACATCATGATT 58.906 40.909 5.16 0.00 0.00 2.57
519 520 3.512329 TGCTTGCTCCAACATCATGATTT 59.488 39.130 5.16 0.00 0.00 2.17
520 521 4.020928 TGCTTGCTCCAACATCATGATTTT 60.021 37.500 5.16 2.92 0.00 1.82
521 522 4.933400 GCTTGCTCCAACATCATGATTTTT 59.067 37.500 5.16 0.00 0.00 1.94
522 523 5.063060 GCTTGCTCCAACATCATGATTTTTC 59.937 40.000 5.16 0.00 0.00 2.29
523 524 5.075858 TGCTCCAACATCATGATTTTTCC 57.924 39.130 5.16 0.00 0.00 3.13
524 525 4.527427 TGCTCCAACATCATGATTTTTCCA 59.473 37.500 5.16 0.00 0.00 3.53
525 526 5.188163 TGCTCCAACATCATGATTTTTCCAT 59.812 36.000 5.16 0.00 0.00 3.41
526 527 6.110707 GCTCCAACATCATGATTTTTCCATT 58.889 36.000 5.16 0.00 0.00 3.16
527 528 7.093421 TGCTCCAACATCATGATTTTTCCATTA 60.093 33.333 5.16 0.00 0.00 1.90
528 529 7.437267 GCTCCAACATCATGATTTTTCCATTAG 59.563 37.037 5.16 0.00 0.00 1.73
529 530 8.365060 TCCAACATCATGATTTTTCCATTAGT 57.635 30.769 5.16 0.00 0.00 2.24
530 531 8.469200 TCCAACATCATGATTTTTCCATTAGTC 58.531 33.333 5.16 0.00 0.00 2.59
531 532 7.707893 CCAACATCATGATTTTTCCATTAGTCC 59.292 37.037 5.16 0.00 0.00 3.85
532 533 7.959658 ACATCATGATTTTTCCATTAGTCCA 57.040 32.000 5.16 0.00 0.00 4.02
533 534 8.543293 ACATCATGATTTTTCCATTAGTCCAT 57.457 30.769 5.16 0.00 0.00 3.41
534 535 8.636213 ACATCATGATTTTTCCATTAGTCCATC 58.364 33.333 5.16 0.00 0.00 3.51
535 536 8.857098 CATCATGATTTTTCCATTAGTCCATCT 58.143 33.333 5.16 0.00 0.00 2.90
537 538 9.565090 TCATGATTTTTCCATTAGTCCATCTAG 57.435 33.333 0.00 0.00 0.00 2.43
538 539 7.807977 TGATTTTTCCATTAGTCCATCTAGC 57.192 36.000 0.00 0.00 0.00 3.42
539 540 7.345691 TGATTTTTCCATTAGTCCATCTAGCA 58.654 34.615 0.00 0.00 0.00 3.49
540 541 7.500227 TGATTTTTCCATTAGTCCATCTAGCAG 59.500 37.037 0.00 0.00 0.00 4.24
541 542 4.963318 TTCCATTAGTCCATCTAGCAGG 57.037 45.455 0.00 0.00 0.00 4.85
542 543 4.199002 TCCATTAGTCCATCTAGCAGGA 57.801 45.455 0.00 0.00 0.00 3.86
543 544 4.155709 TCCATTAGTCCATCTAGCAGGAG 58.844 47.826 3.51 0.00 33.85 3.69
544 545 3.306641 CCATTAGTCCATCTAGCAGGAGC 60.307 52.174 3.51 0.00 42.56 4.70
545 546 2.755952 TAGTCCATCTAGCAGGAGCA 57.244 50.000 3.51 0.00 45.49 4.26
546 547 1.871418 AGTCCATCTAGCAGGAGCAA 58.129 50.000 3.51 0.00 45.49 3.91
547 548 1.761784 AGTCCATCTAGCAGGAGCAAG 59.238 52.381 3.51 0.00 45.49 4.01
548 549 0.467384 TCCATCTAGCAGGAGCAAGC 59.533 55.000 0.00 0.00 45.49 4.01
549 550 0.879400 CCATCTAGCAGGAGCAAGCG 60.879 60.000 0.00 0.00 45.49 4.68
550 551 0.103755 CATCTAGCAGGAGCAAGCGA 59.896 55.000 0.00 0.00 45.49 4.93
551 552 0.388659 ATCTAGCAGGAGCAAGCGAG 59.611 55.000 0.00 0.00 45.49 5.03
552 553 1.882167 CTAGCAGGAGCAAGCGAGC 60.882 63.158 0.00 0.00 45.49 5.03
559 560 3.592070 AGCAAGCGAGCTCGTCTA 58.408 55.556 34.46 0.00 42.18 2.59
560 561 1.137825 AGCAAGCGAGCTCGTCTAC 59.862 57.895 34.46 24.35 42.18 2.59
561 562 1.137825 GCAAGCGAGCTCGTCTACT 59.862 57.895 34.46 21.30 42.22 2.57
562 563 0.863957 GCAAGCGAGCTCGTCTACTC 60.864 60.000 34.46 18.30 42.22 2.59
563 564 0.730265 CAAGCGAGCTCGTCTACTCT 59.270 55.000 34.46 20.22 42.22 3.24
564 565 1.934525 CAAGCGAGCTCGTCTACTCTA 59.065 52.381 34.46 0.00 42.22 2.43
565 566 1.574134 AGCGAGCTCGTCTACTCTAC 58.426 55.000 34.46 16.16 42.22 2.59
566 567 0.582960 GCGAGCTCGTCTACTCTACC 59.417 60.000 34.46 12.23 42.22 3.18
567 568 1.219646 CGAGCTCGTCTACTCTACCC 58.780 60.000 27.79 0.00 34.11 3.69
568 569 1.472904 CGAGCTCGTCTACTCTACCCA 60.473 57.143 27.79 0.00 34.11 4.51
569 570 2.215196 GAGCTCGTCTACTCTACCCAG 58.785 57.143 0.00 0.00 0.00 4.45
570 571 0.664224 GCTCGTCTACTCTACCCAGC 59.336 60.000 0.00 0.00 0.00 4.85
571 572 2.017623 GCTCGTCTACTCTACCCAGCA 61.018 57.143 0.00 0.00 0.00 4.41
572 573 2.577700 CTCGTCTACTCTACCCAGCAT 58.422 52.381 0.00 0.00 0.00 3.79
573 574 2.952978 CTCGTCTACTCTACCCAGCATT 59.047 50.000 0.00 0.00 0.00 3.56
574 575 2.950309 TCGTCTACTCTACCCAGCATTC 59.050 50.000 0.00 0.00 0.00 2.67
575 576 2.952978 CGTCTACTCTACCCAGCATTCT 59.047 50.000 0.00 0.00 0.00 2.40
576 577 3.381908 CGTCTACTCTACCCAGCATTCTT 59.618 47.826 0.00 0.00 0.00 2.52
577 578 4.142138 CGTCTACTCTACCCAGCATTCTTT 60.142 45.833 0.00 0.00 0.00 2.52
578 579 5.067413 CGTCTACTCTACCCAGCATTCTTTA 59.933 44.000 0.00 0.00 0.00 1.85
579 580 6.239064 CGTCTACTCTACCCAGCATTCTTTAT 60.239 42.308 0.00 0.00 0.00 1.40
580 581 7.040617 CGTCTACTCTACCCAGCATTCTTTATA 60.041 40.741 0.00 0.00 0.00 0.98
581 582 8.808092 GTCTACTCTACCCAGCATTCTTTATAT 58.192 37.037 0.00 0.00 0.00 0.86
629 630 8.235359 TCTTGAGTAACTAGCTTTATACTCCC 57.765 38.462 20.61 6.95 42.18 4.30
630 631 6.630444 TGAGTAACTAGCTTTATACTCCCG 57.370 41.667 20.61 0.00 42.18 5.14
631 632 5.533903 TGAGTAACTAGCTTTATACTCCCGG 59.466 44.000 20.61 0.00 42.18 5.73
632 633 4.831710 AGTAACTAGCTTTATACTCCCGGG 59.168 45.833 16.85 16.85 0.00 5.73
633 634 3.325359 ACTAGCTTTATACTCCCGGGT 57.675 47.619 22.86 4.16 0.00 5.28
634 635 4.459852 ACTAGCTTTATACTCCCGGGTA 57.540 45.455 22.86 6.87 0.00 3.69
635 636 4.405548 ACTAGCTTTATACTCCCGGGTAG 58.594 47.826 22.86 18.65 0.00 3.18
636 637 3.325359 AGCTTTATACTCCCGGGTAGT 57.675 47.619 22.86 23.24 0.00 2.73
637 638 4.459852 AGCTTTATACTCCCGGGTAGTA 57.540 45.455 25.49 25.49 34.11 1.82
638 639 4.148079 AGCTTTATACTCCCGGGTAGTAC 58.852 47.826 25.68 16.64 32.47 2.73
685 688 1.535462 GCCTAAATCAGTGTGCACGTT 59.465 47.619 13.13 0.00 36.20 3.99
711 718 1.956477 GTTTGCTGGACATGAGTGGTT 59.044 47.619 0.00 0.00 0.00 3.67
712 719 1.608055 TTGCTGGACATGAGTGGTTG 58.392 50.000 0.00 0.00 0.00 3.77
713 720 0.250858 TGCTGGACATGAGTGGTTGG 60.251 55.000 0.00 0.00 0.00 3.77
715 722 1.527034 CTGGACATGAGTGGTTGGTG 58.473 55.000 0.00 0.00 0.00 4.17
716 723 0.843309 TGGACATGAGTGGTTGGTGT 59.157 50.000 0.00 0.00 0.00 4.16
717 724 1.202758 TGGACATGAGTGGTTGGTGTC 60.203 52.381 0.00 0.00 38.69 3.67
718 725 1.523758 GACATGAGTGGTTGGTGTCC 58.476 55.000 0.00 0.00 34.58 4.02
719 726 0.843309 ACATGAGTGGTTGGTGTCCA 59.157 50.000 0.00 0.00 0.00 4.02
720 727 1.425066 ACATGAGTGGTTGGTGTCCAT 59.575 47.619 0.00 0.00 37.30 3.41
721 728 1.814394 CATGAGTGGTTGGTGTCCATG 59.186 52.381 0.00 0.00 37.30 3.66
773 792 1.141053 ACGAGTCCAAGTTTCCAAGCT 59.859 47.619 0.00 0.00 0.00 3.74
800 826 6.512415 GCTGCTACTAGCCAAACATCTTTATG 60.512 42.308 5.58 0.00 41.51 1.90
822 848 3.431626 GCCCCCAACTAACCAAATAATGC 60.432 47.826 0.00 0.00 0.00 3.56
825 851 4.420168 CCCAACTAACCAAATAATGCACG 58.580 43.478 0.00 0.00 0.00 5.34
827 853 4.856487 CCAACTAACCAAATAATGCACGTG 59.144 41.667 12.28 12.28 0.00 4.49
927 955 1.550130 TAGCCAGCCACACCACTACC 61.550 60.000 0.00 0.00 0.00 3.18
1098 1137 1.380524 AGCTGCTGATGCTCAATCAC 58.619 50.000 0.00 0.00 40.50 3.06
1114 1153 6.042638 TCAATCACTTCACCTCTTCCTAAG 57.957 41.667 0.00 0.00 0.00 2.18
1174 1225 3.460103 AGGTCTCTCGTCTCGTCTTATC 58.540 50.000 0.00 0.00 0.00 1.75
1191 1243 8.515414 TCGTCTTATCAGTGACATATTATCTGG 58.485 37.037 0.00 0.00 33.18 3.86
1219 1273 2.964925 GTCGGTGTCTTGCGTGCA 60.965 61.111 0.00 0.00 0.00 4.57
1439 1493 0.250513 GATCCGTTCAGGGCTTCAGT 59.749 55.000 0.00 0.00 41.52 3.41
1451 1505 0.172352 GCTTCAGTCTCAGACGAGGG 59.828 60.000 0.00 0.00 39.95 4.30
1494 1556 2.144730 GATGAGATGAGCAGTCATGGC 58.855 52.381 0.00 0.00 43.92 4.40
1505 1567 0.533755 AGTCATGGCGCCTATGCTTC 60.534 55.000 29.70 19.22 34.43 3.86
1507 1569 0.250038 TCATGGCGCCTATGCTTCTC 60.250 55.000 29.70 0.00 34.43 2.87
1572 1635 4.271687 GTCGTGTCTTGTCAATGTGTTTC 58.728 43.478 0.00 0.00 0.00 2.78
1780 1926 5.163723 CCGACGTACTACTCTTTTACCATCA 60.164 44.000 0.00 0.00 0.00 3.07
1869 2021 6.083925 CAGAGTTTGCTAAATCGACTACAC 57.916 41.667 2.85 0.00 33.74 2.90
1945 2098 4.419522 TGGCTAAAAATCGAACTTGCTC 57.580 40.909 0.00 0.00 0.00 4.26
1968 2121 2.104451 TGGCGAACCACCTTAAGTTGTA 59.896 45.455 0.97 0.00 42.67 2.41
1974 2127 5.049886 CGAACCACCTTAAGTTGTAAGAACC 60.050 44.000 0.97 0.00 0.00 3.62
1976 2129 5.618236 ACCACCTTAAGTTGTAAGAACCTC 58.382 41.667 0.97 0.00 0.00 3.85
2026 2179 3.889815 TCCTTTCGCCTTGATCATGAAT 58.110 40.909 10.07 0.00 0.00 2.57
2106 2260 4.280929 GGCTTTGGACTAAAGTTGGTTCAT 59.719 41.667 12.30 0.00 46.05 2.57
2110 2264 6.515035 CTTTGGACTAAAGTTGGTTCATCACC 60.515 42.308 3.25 0.00 42.22 4.02
2158 2313 6.904954 AATGTAACAAAAAGCATACGAACG 57.095 33.333 0.00 0.00 0.00 3.95
2165 2320 0.036765 AAGCATACGAACGGGCTGAA 60.037 50.000 0.00 0.00 36.58 3.02
2205 2361 6.968131 TCTCTATGTGGTCTGAAATTTTCG 57.032 37.500 4.76 0.68 0.00 3.46
2279 2435 9.913310 TCATTGGGATGTATACTTCATGTTTTA 57.087 29.630 17.71 0.00 34.77 1.52
2355 2512 8.849168 ACATCAAAACTTCATCATGAACACTTA 58.151 29.630 0.00 0.00 32.21 2.24
2365 2522 8.164058 TCATCATGAACACTTAACAAACATGA 57.836 30.769 0.00 0.00 43.74 3.07
2366 2523 8.628280 TCATCATGAACACTTAACAAACATGAA 58.372 29.630 0.00 0.00 43.17 2.57
2367 2524 8.908678 CATCATGAACACTTAACAAACATGAAG 58.091 33.333 0.00 0.00 43.17 3.02
2368 2525 7.995289 TCATGAACACTTAACAAACATGAAGT 58.005 30.769 0.00 0.00 39.29 3.01
2369 2526 9.114952 TCATGAACACTTAACAAACATGAAGTA 57.885 29.630 0.00 0.00 39.29 2.24
2370 2527 9.897744 CATGAACACTTAACAAACATGAAGTAT 57.102 29.630 0.00 0.00 36.70 2.12
2372 2529 9.114952 TGAACACTTAACAAACATGAAGTATCA 57.885 29.630 0.00 3.43 40.57 2.15
2418 2575 3.120121 GCGATGAAAACATGCAACAAGAC 59.880 43.478 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.074994 CGTGTAAAATAGGCTAGTTTAGAGCG 60.075 42.308 23.11 21.30 41.06 5.03
2 3 6.074994 CGCGTGTAAAATAGGCTAGTTTAGAG 60.075 42.308 23.11 17.98 30.07 2.43
3 4 5.745294 CGCGTGTAAAATAGGCTAGTTTAGA 59.255 40.000 23.11 20.05 30.07 2.10
4 5 5.745294 TCGCGTGTAAAATAGGCTAGTTTAG 59.255 40.000 23.11 14.73 30.07 1.85
5 6 5.649557 TCGCGTGTAAAATAGGCTAGTTTA 58.350 37.500 19.85 19.85 0.00 2.01
6 7 4.497300 TCGCGTGTAAAATAGGCTAGTTT 58.503 39.130 21.76 21.76 0.00 2.66
7 8 4.114058 TCGCGTGTAAAATAGGCTAGTT 57.886 40.909 5.77 0.58 0.00 2.24
8 9 3.788333 TCGCGTGTAAAATAGGCTAGT 57.212 42.857 5.77 0.00 0.00 2.57
9 10 4.026804 CACTTCGCGTGTAAAATAGGCTAG 60.027 45.833 5.77 0.00 38.84 3.42
10 11 3.861113 CACTTCGCGTGTAAAATAGGCTA 59.139 43.478 5.77 0.00 38.84 3.93
11 12 2.671396 CACTTCGCGTGTAAAATAGGCT 59.329 45.455 5.77 0.00 38.84 4.58
12 13 3.034406 CACTTCGCGTGTAAAATAGGC 57.966 47.619 5.77 0.00 38.84 3.93
23 24 2.325082 GGGATGCAACACTTCGCGT 61.325 57.895 5.77 0.00 0.00 6.01
24 25 1.851021 TTGGGATGCAACACTTCGCG 61.851 55.000 0.00 0.00 37.98 5.87
25 26 0.387239 GTTGGGATGCAACACTTCGC 60.387 55.000 0.00 0.00 36.33 4.70
26 27 1.197721 GAGTTGGGATGCAACACTTCG 59.802 52.381 0.00 0.00 35.18 3.79
27 28 2.229792 TGAGTTGGGATGCAACACTTC 58.770 47.619 0.00 0.00 35.18 3.01
28 29 2.363306 TGAGTTGGGATGCAACACTT 57.637 45.000 0.00 0.00 35.18 3.16
29 30 2.158623 TCTTGAGTTGGGATGCAACACT 60.159 45.455 0.00 0.00 35.18 3.55
30 31 2.229792 TCTTGAGTTGGGATGCAACAC 58.770 47.619 0.00 0.00 35.18 3.32
31 32 2.655090 TCTTGAGTTGGGATGCAACA 57.345 45.000 0.00 0.00 35.18 3.33
32 33 3.569701 TCTTTCTTGAGTTGGGATGCAAC 59.430 43.478 0.00 0.00 0.00 4.17
33 34 3.831323 TCTTTCTTGAGTTGGGATGCAA 58.169 40.909 0.00 0.00 0.00 4.08
34 35 3.507162 TCTTTCTTGAGTTGGGATGCA 57.493 42.857 0.00 0.00 0.00 3.96
35 36 4.279420 ACTTTCTTTCTTGAGTTGGGATGC 59.721 41.667 0.00 0.00 0.00 3.91
36 37 5.300286 ACACTTTCTTTCTTGAGTTGGGATG 59.700 40.000 0.00 0.00 0.00 3.51
37 38 5.300286 CACACTTTCTTTCTTGAGTTGGGAT 59.700 40.000 0.00 0.00 0.00 3.85
38 39 4.640201 CACACTTTCTTTCTTGAGTTGGGA 59.360 41.667 0.00 0.00 0.00 4.37
39 40 4.734695 GCACACTTTCTTTCTTGAGTTGGG 60.735 45.833 0.00 0.00 0.00 4.12
40 41 4.096984 AGCACACTTTCTTTCTTGAGTTGG 59.903 41.667 0.00 0.00 0.00 3.77
41 42 5.240713 AGCACACTTTCTTTCTTGAGTTG 57.759 39.130 0.00 0.00 0.00 3.16
42 43 5.447818 CGAAGCACACTTTCTTTCTTGAGTT 60.448 40.000 0.00 0.00 35.82 3.01
43 44 4.034510 CGAAGCACACTTTCTTTCTTGAGT 59.965 41.667 0.00 0.00 35.82 3.41
44 45 4.271049 TCGAAGCACACTTTCTTTCTTGAG 59.729 41.667 0.00 0.00 35.82 3.02
45 46 4.034048 GTCGAAGCACACTTTCTTTCTTGA 59.966 41.667 0.00 0.00 35.82 3.02
46 47 4.274865 GTCGAAGCACACTTTCTTTCTTG 58.725 43.478 0.00 0.00 35.82 3.02
47 48 3.001330 CGTCGAAGCACACTTTCTTTCTT 59.999 43.478 0.00 0.00 35.82 2.52
48 49 2.540101 CGTCGAAGCACACTTTCTTTCT 59.460 45.455 0.00 0.00 35.82 2.52
49 50 2.348591 CCGTCGAAGCACACTTTCTTTC 60.349 50.000 0.00 0.00 35.82 2.62
50 51 1.597663 CCGTCGAAGCACACTTTCTTT 59.402 47.619 0.00 0.00 35.82 2.52
51 52 1.202486 TCCGTCGAAGCACACTTTCTT 60.202 47.619 0.00 0.00 35.82 2.52
52 53 0.387929 TCCGTCGAAGCACACTTTCT 59.612 50.000 0.00 0.00 35.82 2.52
53 54 1.070776 GTTCCGTCGAAGCACACTTTC 60.071 52.381 0.00 0.00 35.82 2.62
54 55 0.935196 GTTCCGTCGAAGCACACTTT 59.065 50.000 0.00 0.00 35.82 2.66
55 56 0.179094 TGTTCCGTCGAAGCACACTT 60.179 50.000 0.00 0.00 39.43 3.16
56 57 0.033504 ATGTTCCGTCGAAGCACACT 59.966 50.000 0.00 0.00 0.00 3.55
57 58 0.438830 GATGTTCCGTCGAAGCACAC 59.561 55.000 0.00 0.00 0.00 3.82
58 59 0.032815 TGATGTTCCGTCGAAGCACA 59.967 50.000 0.00 4.53 0.00 4.57
59 60 1.359848 ATGATGTTCCGTCGAAGCAC 58.640 50.000 0.00 0.00 0.00 4.40
60 61 2.093306 AATGATGTTCCGTCGAAGCA 57.907 45.000 0.00 0.00 0.00 3.91
61 62 2.033662 GCTAATGATGTTCCGTCGAAGC 60.034 50.000 0.00 0.00 0.00 3.86
62 63 3.448686 AGCTAATGATGTTCCGTCGAAG 58.551 45.455 0.00 0.00 0.00 3.79
63 64 3.130516 AGAGCTAATGATGTTCCGTCGAA 59.869 43.478 0.00 0.00 0.00 3.71
64 65 2.688446 AGAGCTAATGATGTTCCGTCGA 59.312 45.455 0.00 0.00 0.00 4.20
65 66 3.046390 GAGAGCTAATGATGTTCCGTCG 58.954 50.000 0.00 0.00 0.00 5.12
66 67 3.046390 CGAGAGCTAATGATGTTCCGTC 58.954 50.000 0.00 0.00 0.00 4.79
67 68 2.223829 CCGAGAGCTAATGATGTTCCGT 60.224 50.000 0.00 0.00 0.00 4.69
68 69 2.223829 ACCGAGAGCTAATGATGTTCCG 60.224 50.000 0.00 0.00 0.00 4.30
69 70 3.460857 ACCGAGAGCTAATGATGTTCC 57.539 47.619 0.00 0.00 0.00 3.62
70 71 5.460419 CAGTAACCGAGAGCTAATGATGTTC 59.540 44.000 0.00 0.00 0.00 3.18
71 72 5.352284 CAGTAACCGAGAGCTAATGATGTT 58.648 41.667 0.00 0.00 0.00 2.71
72 73 4.737946 GCAGTAACCGAGAGCTAATGATGT 60.738 45.833 0.00 0.00 0.00 3.06
73 74 3.738282 GCAGTAACCGAGAGCTAATGATG 59.262 47.826 0.00 0.00 0.00 3.07
74 75 3.384789 TGCAGTAACCGAGAGCTAATGAT 59.615 43.478 0.00 0.00 0.00 2.45
75 76 2.758423 TGCAGTAACCGAGAGCTAATGA 59.242 45.455 0.00 0.00 0.00 2.57
76 77 2.860735 GTGCAGTAACCGAGAGCTAATG 59.139 50.000 0.00 0.00 0.00 1.90
77 78 2.159085 GGTGCAGTAACCGAGAGCTAAT 60.159 50.000 0.00 0.00 0.00 1.73
78 79 1.203994 GGTGCAGTAACCGAGAGCTAA 59.796 52.381 0.00 0.00 0.00 3.09
79 80 0.815734 GGTGCAGTAACCGAGAGCTA 59.184 55.000 0.00 0.00 0.00 3.32
80 81 1.592223 GGTGCAGTAACCGAGAGCT 59.408 57.895 0.00 0.00 0.00 4.09
81 82 1.448013 GGGTGCAGTAACCGAGAGC 60.448 63.158 0.00 0.00 41.52 4.09
82 83 0.389948 GTGGGTGCAGTAACCGAGAG 60.390 60.000 0.00 0.00 41.52 3.20
83 84 1.669440 GTGGGTGCAGTAACCGAGA 59.331 57.895 0.00 0.00 41.52 4.04
84 85 1.375523 GGTGGGTGCAGTAACCGAG 60.376 63.158 0.00 0.00 41.52 4.63
85 86 2.745037 GGTGGGTGCAGTAACCGA 59.255 61.111 0.00 0.00 41.52 4.69
86 87 2.359478 GGGTGGGTGCAGTAACCG 60.359 66.667 5.73 0.00 41.52 4.44
87 88 1.602605 GTGGGTGGGTGCAGTAACC 60.603 63.158 3.50 3.50 39.71 2.85
88 89 1.964373 CGTGGGTGGGTGCAGTAAC 60.964 63.158 0.00 0.00 0.00 2.50
89 90 2.386064 GACGTGGGTGGGTGCAGTAA 62.386 60.000 0.00 0.00 0.00 2.24
90 91 2.845317 ACGTGGGTGGGTGCAGTA 60.845 61.111 0.00 0.00 0.00 2.74
91 92 4.250305 GACGTGGGTGGGTGCAGT 62.250 66.667 0.00 0.00 0.00 4.40
94 95 4.922026 AACGACGTGGGTGGGTGC 62.922 66.667 0.00 0.00 0.00 5.01
95 96 2.970324 CAACGACGTGGGTGGGTG 60.970 66.667 7.85 0.00 33.17 4.61
96 97 2.540028 AAACAACGACGTGGGTGGGT 62.540 55.000 20.13 4.40 0.00 4.51
97 98 1.778027 GAAACAACGACGTGGGTGGG 61.778 60.000 20.13 4.03 0.00 4.61
98 99 1.090625 TGAAACAACGACGTGGGTGG 61.091 55.000 20.13 4.89 0.00 4.61
99 100 0.941542 ATGAAACAACGACGTGGGTG 59.058 50.000 14.56 14.56 0.00 4.61
100 101 1.223187 GATGAAACAACGACGTGGGT 58.777 50.000 7.41 0.00 0.00 4.51
101 102 1.222300 TGATGAAACAACGACGTGGG 58.778 50.000 7.41 2.79 0.00 4.61
102 103 3.430556 TGTATGATGAAACAACGACGTGG 59.569 43.478 0.00 0.00 0.00 4.94
103 104 4.434198 CCTGTATGATGAAACAACGACGTG 60.434 45.833 0.00 0.00 0.00 4.49
104 105 3.678072 CCTGTATGATGAAACAACGACGT 59.322 43.478 0.00 0.00 0.00 4.34
105 106 3.483574 GCCTGTATGATGAAACAACGACG 60.484 47.826 0.00 0.00 0.00 5.12
106 107 3.181510 GGCCTGTATGATGAAACAACGAC 60.182 47.826 0.00 0.00 0.00 4.34
107 108 3.006940 GGCCTGTATGATGAAACAACGA 58.993 45.455 0.00 0.00 0.00 3.85
108 109 2.097466 GGGCCTGTATGATGAAACAACG 59.903 50.000 0.84 0.00 0.00 4.10
109 110 3.088532 TGGGCCTGTATGATGAAACAAC 58.911 45.455 4.53 0.00 0.00 3.32
110 111 3.088532 GTGGGCCTGTATGATGAAACAA 58.911 45.455 4.53 0.00 0.00 2.83
111 112 2.722094 GTGGGCCTGTATGATGAAACA 58.278 47.619 4.53 0.00 0.00 2.83
112 113 1.670811 CGTGGGCCTGTATGATGAAAC 59.329 52.381 4.53 0.00 0.00 2.78
113 114 1.280710 ACGTGGGCCTGTATGATGAAA 59.719 47.619 4.53 0.00 0.00 2.69
114 115 0.908910 ACGTGGGCCTGTATGATGAA 59.091 50.000 4.53 0.00 0.00 2.57
115 116 0.464036 GACGTGGGCCTGTATGATGA 59.536 55.000 4.53 0.00 0.00 2.92
116 117 0.532862 GGACGTGGGCCTGTATGATG 60.533 60.000 4.53 0.00 0.00 3.07
117 118 0.980754 TGGACGTGGGCCTGTATGAT 60.981 55.000 4.53 0.00 0.00 2.45
118 119 1.610967 TGGACGTGGGCCTGTATGA 60.611 57.895 4.53 0.00 0.00 2.15
119 120 1.449601 GTGGACGTGGGCCTGTATG 60.450 63.158 4.53 0.00 0.00 2.39
120 121 1.271840 ATGTGGACGTGGGCCTGTAT 61.272 55.000 4.53 0.00 0.00 2.29
121 122 1.916273 ATGTGGACGTGGGCCTGTA 60.916 57.895 4.53 0.00 0.00 2.74
122 123 3.249189 ATGTGGACGTGGGCCTGT 61.249 61.111 4.53 2.81 0.00 4.00
123 124 2.747460 CATGTGGACGTGGGCCTG 60.747 66.667 4.53 0.00 0.00 4.85
124 125 4.722700 GCATGTGGACGTGGGCCT 62.723 66.667 4.53 0.00 33.60 5.19
126 127 4.722700 AGGCATGTGGACGTGGGC 62.723 66.667 0.00 0.00 33.60 5.36
127 128 2.747460 CAGGCATGTGGACGTGGG 60.747 66.667 0.00 0.00 33.60 4.61
128 129 2.032528 ACAGGCATGTGGACGTGG 59.967 61.111 1.71 0.00 38.57 4.94
129 130 0.603707 AAGACAGGCATGTGGACGTG 60.604 55.000 9.62 0.00 40.68 4.49
130 131 0.108585 AAAGACAGGCATGTGGACGT 59.891 50.000 9.62 0.00 40.68 4.34
131 132 1.197721 GAAAAGACAGGCATGTGGACG 59.802 52.381 9.62 0.00 40.68 4.79
132 133 1.541588 GGAAAAGACAGGCATGTGGAC 59.458 52.381 9.62 0.00 40.68 4.02
133 134 1.547675 GGGAAAAGACAGGCATGTGGA 60.548 52.381 9.62 0.00 40.68 4.02
134 135 0.890683 GGGAAAAGACAGGCATGTGG 59.109 55.000 9.62 0.00 40.68 4.17
135 136 1.542915 CAGGGAAAAGACAGGCATGTG 59.457 52.381 9.62 0.00 40.68 3.21
136 137 1.915141 CAGGGAAAAGACAGGCATGT 58.085 50.000 2.33 2.33 44.31 3.21
137 138 0.529378 GCAGGGAAAAGACAGGCATG 59.471 55.000 0.00 0.00 0.00 4.06
138 139 0.962356 CGCAGGGAAAAGACAGGCAT 60.962 55.000 0.00 0.00 0.00 4.40
139 140 1.600636 CGCAGGGAAAAGACAGGCA 60.601 57.895 0.00 0.00 0.00 4.75
140 141 2.982744 GCGCAGGGAAAAGACAGGC 61.983 63.158 0.30 0.00 0.00 4.85
141 142 1.172180 TTGCGCAGGGAAAAGACAGG 61.172 55.000 11.31 0.00 0.00 4.00
142 143 0.667993 TTTGCGCAGGGAAAAGACAG 59.332 50.000 11.31 0.00 29.93 3.51
143 144 0.383949 GTTTGCGCAGGGAAAAGACA 59.616 50.000 11.31 0.00 35.13 3.41
144 145 0.668535 AGTTTGCGCAGGGAAAAGAC 59.331 50.000 11.31 0.95 35.13 3.01
145 146 0.951558 GAGTTTGCGCAGGGAAAAGA 59.048 50.000 11.31 0.00 35.13 2.52
146 147 0.667993 TGAGTTTGCGCAGGGAAAAG 59.332 50.000 11.31 0.00 35.13 2.27
147 148 0.383949 GTGAGTTTGCGCAGGGAAAA 59.616 50.000 11.31 0.00 35.13 2.29
148 149 1.452145 GGTGAGTTTGCGCAGGGAAA 61.452 55.000 11.31 0.00 0.00 3.13
149 150 1.896660 GGTGAGTTTGCGCAGGGAA 60.897 57.895 11.31 0.00 0.00 3.97
150 151 2.281484 GGTGAGTTTGCGCAGGGA 60.281 61.111 11.31 0.00 0.00 4.20
151 152 3.365265 GGGTGAGTTTGCGCAGGG 61.365 66.667 11.31 0.00 0.00 4.45
152 153 1.973281 ATGGGTGAGTTTGCGCAGG 60.973 57.895 11.31 0.00 0.00 4.85
153 154 1.210931 CATGGGTGAGTTTGCGCAG 59.789 57.895 11.31 0.00 0.00 5.18
154 155 1.106351 AACATGGGTGAGTTTGCGCA 61.106 50.000 5.66 5.66 0.00 6.09
155 156 0.031994 AAACATGGGTGAGTTTGCGC 59.968 50.000 0.00 0.00 36.65 6.09
156 157 1.335872 GGAAACATGGGTGAGTTTGCG 60.336 52.381 0.00 0.00 38.01 4.85
157 158 1.686052 TGGAAACATGGGTGAGTTTGC 59.314 47.619 0.00 0.00 43.55 3.68
158 159 2.692557 TGTGGAAACATGGGTGAGTTTG 59.307 45.455 0.00 0.00 46.14 2.93
159 160 3.025322 TGTGGAAACATGGGTGAGTTT 57.975 42.857 0.00 0.00 46.14 2.66
160 161 2.746279 TGTGGAAACATGGGTGAGTT 57.254 45.000 0.00 0.00 46.14 3.01
161 162 2.746279 TTGTGGAAACATGGGTGAGT 57.254 45.000 0.00 0.00 46.14 3.41
162 163 3.156293 TGATTGTGGAAACATGGGTGAG 58.844 45.455 0.00 0.00 46.14 3.51
163 164 3.235750 TGATTGTGGAAACATGGGTGA 57.764 42.857 0.00 0.00 46.14 4.02
164 165 4.247258 CAATGATTGTGGAAACATGGGTG 58.753 43.478 0.00 0.00 46.14 4.61
165 166 3.261390 CCAATGATTGTGGAAACATGGGT 59.739 43.478 4.27 0.00 46.14 4.51
166 167 3.369681 CCCAATGATTGTGGAAACATGGG 60.370 47.826 4.27 0.00 46.14 4.00
167 168 3.369681 CCCCAATGATTGTGGAAACATGG 60.370 47.826 0.00 0.00 46.14 3.66
168 169 3.864243 CCCCAATGATTGTGGAAACATG 58.136 45.455 0.00 0.00 46.14 3.21
169 170 2.236893 GCCCCAATGATTGTGGAAACAT 59.763 45.455 10.97 0.00 46.14 2.71
170 171 1.622811 GCCCCAATGATTGTGGAAACA 59.377 47.619 10.97 0.00 38.54 2.83
171 172 1.066215 GGCCCCAATGATTGTGGAAAC 60.066 52.381 10.97 0.00 38.54 2.78
172 173 1.203288 AGGCCCCAATGATTGTGGAAA 60.203 47.619 10.97 0.00 38.54 3.13
173 174 0.413037 AGGCCCCAATGATTGTGGAA 59.587 50.000 10.97 0.00 38.54 3.53
174 175 0.033208 GAGGCCCCAATGATTGTGGA 60.033 55.000 10.97 0.00 38.54 4.02
175 176 0.032813 AGAGGCCCCAATGATTGTGG 60.033 55.000 0.00 2.05 35.77 4.17
176 177 1.856629 AAGAGGCCCCAATGATTGTG 58.143 50.000 0.00 0.00 0.00 3.33
177 178 2.568509 CAAAAGAGGCCCCAATGATTGT 59.431 45.455 0.00 0.00 0.00 2.71
178 179 2.093341 CCAAAAGAGGCCCCAATGATTG 60.093 50.000 0.00 0.00 0.00 2.67
179 180 2.190538 CCAAAAGAGGCCCCAATGATT 58.809 47.619 0.00 0.00 0.00 2.57
180 181 1.079323 ACCAAAAGAGGCCCCAATGAT 59.921 47.619 0.00 0.00 0.00 2.45
181 182 0.486879 ACCAAAAGAGGCCCCAATGA 59.513 50.000 0.00 0.00 0.00 2.57
182 183 1.351076 AACCAAAAGAGGCCCCAATG 58.649 50.000 0.00 0.00 0.00 2.82
183 184 1.699083 CAAACCAAAAGAGGCCCCAAT 59.301 47.619 0.00 0.00 0.00 3.16
184 185 1.127343 CAAACCAAAAGAGGCCCCAA 58.873 50.000 0.00 0.00 0.00 4.12
185 186 0.263172 TCAAACCAAAAGAGGCCCCA 59.737 50.000 0.00 0.00 0.00 4.96
186 187 1.344438 CTTCAAACCAAAAGAGGCCCC 59.656 52.381 0.00 0.00 0.00 5.80
187 188 1.344438 CCTTCAAACCAAAAGAGGCCC 59.656 52.381 0.00 0.00 0.00 5.80
188 189 2.316108 TCCTTCAAACCAAAAGAGGCC 58.684 47.619 0.00 0.00 0.00 5.19
189 190 4.607293 ATTCCTTCAAACCAAAAGAGGC 57.393 40.909 0.00 0.00 0.00 4.70
190 191 6.823182 ACAAAATTCCTTCAAACCAAAAGAGG 59.177 34.615 0.00 0.00 0.00 3.69
191 192 7.848223 ACAAAATTCCTTCAAACCAAAAGAG 57.152 32.000 0.00 0.00 0.00 2.85
192 193 8.754080 TCTACAAAATTCCTTCAAACCAAAAGA 58.246 29.630 0.00 0.00 0.00 2.52
193 194 8.940768 TCTACAAAATTCCTTCAAACCAAAAG 57.059 30.769 0.00 0.00 0.00 2.27
194 195 9.726438 TTTCTACAAAATTCCTTCAAACCAAAA 57.274 25.926 0.00 0.00 0.00 2.44
195 196 9.898152 ATTTCTACAAAATTCCTTCAAACCAAA 57.102 25.926 0.00 0.00 0.00 3.28
196 197 9.898152 AATTTCTACAAAATTCCTTCAAACCAA 57.102 25.926 0.00 0.00 0.00 3.67
197 198 9.898152 AAATTTCTACAAAATTCCTTCAAACCA 57.102 25.926 0.00 0.00 0.00 3.67
200 201 9.810545 ACGAAATTTCTACAAAATTCCTTCAAA 57.189 25.926 15.92 0.00 30.40 2.69
203 204 9.556030 CCTACGAAATTTCTACAAAATTCCTTC 57.444 33.333 15.92 0.00 30.40 3.46
204 205 8.520351 CCCTACGAAATTTCTACAAAATTCCTT 58.480 33.333 15.92 0.00 30.40 3.36
205 206 7.668469 ACCCTACGAAATTTCTACAAAATTCCT 59.332 33.333 15.92 0.00 30.40 3.36
206 207 7.823665 ACCCTACGAAATTTCTACAAAATTCC 58.176 34.615 15.92 0.00 30.40 3.01
207 208 9.983804 CTACCCTACGAAATTTCTACAAAATTC 57.016 33.333 15.92 0.00 30.73 2.17
208 209 8.953313 CCTACCCTACGAAATTTCTACAAAATT 58.047 33.333 15.92 0.00 0.00 1.82
209 210 8.323567 TCCTACCCTACGAAATTTCTACAAAAT 58.676 33.333 15.92 0.00 0.00 1.82
210 211 7.678837 TCCTACCCTACGAAATTTCTACAAAA 58.321 34.615 15.92 0.00 0.00 2.44
211 212 7.243604 TCCTACCCTACGAAATTTCTACAAA 57.756 36.000 15.92 0.00 0.00 2.83
212 213 6.855763 TCCTACCCTACGAAATTTCTACAA 57.144 37.500 15.92 0.00 0.00 2.41
213 214 7.427989 AATCCTACCCTACGAAATTTCTACA 57.572 36.000 15.92 0.56 0.00 2.74
214 215 8.728337 AAAATCCTACCCTACGAAATTTCTAC 57.272 34.615 15.92 0.00 0.00 2.59
216 217 9.916360 ATAAAAATCCTACCCTACGAAATTTCT 57.084 29.630 15.92 6.09 0.00 2.52
219 220 9.788889 CCTATAAAAATCCTACCCTACGAAATT 57.211 33.333 0.00 0.00 0.00 1.82
220 221 9.162733 TCCTATAAAAATCCTACCCTACGAAAT 57.837 33.333 0.00 0.00 0.00 2.17
221 222 8.551682 TCCTATAAAAATCCTACCCTACGAAA 57.448 34.615 0.00 0.00 0.00 3.46
222 223 8.551682 TTCCTATAAAAATCCTACCCTACGAA 57.448 34.615 0.00 0.00 0.00 3.85
223 224 8.551682 TTTCCTATAAAAATCCTACCCTACGA 57.448 34.615 0.00 0.00 0.00 3.43
224 225 9.617523 TTTTTCCTATAAAAATCCTACCCTACG 57.382 33.333 0.00 0.00 0.00 3.51
247 248 8.743714 CAAACCAAAGAGCTCTATAGGATTTTT 58.256 33.333 26.71 17.25 0.00 1.94
248 249 7.890655 ACAAACCAAAGAGCTCTATAGGATTTT 59.109 33.333 26.71 17.75 0.00 1.82
249 250 7.406104 ACAAACCAAAGAGCTCTATAGGATTT 58.594 34.615 26.71 20.37 0.00 2.17
250 251 6.963322 ACAAACCAAAGAGCTCTATAGGATT 58.037 36.000 26.71 20.64 0.00 3.01
251 252 6.567602 ACAAACCAAAGAGCTCTATAGGAT 57.432 37.500 26.71 17.02 0.00 3.24
252 253 6.098409 CCTACAAACCAAAGAGCTCTATAGGA 59.902 42.308 26.71 10.13 0.00 2.94
253 254 6.098409 TCCTACAAACCAAAGAGCTCTATAGG 59.902 42.308 18.59 20.23 0.00 2.57
254 255 7.113658 TCCTACAAACCAAAGAGCTCTATAG 57.886 40.000 18.59 10.84 0.00 1.31
255 256 7.490657 TTCCTACAAACCAAAGAGCTCTATA 57.509 36.000 18.59 0.00 0.00 1.31
256 257 6.374417 TTCCTACAAACCAAAGAGCTCTAT 57.626 37.500 18.59 4.56 0.00 1.98
257 258 5.818678 TTCCTACAAACCAAAGAGCTCTA 57.181 39.130 18.59 0.00 0.00 2.43
258 259 4.706842 TTCCTACAAACCAAAGAGCTCT 57.293 40.909 11.45 11.45 0.00 4.09
259 260 5.003804 TCATTCCTACAAACCAAAGAGCTC 58.996 41.667 5.27 5.27 0.00 4.09
260 261 4.985538 TCATTCCTACAAACCAAAGAGCT 58.014 39.130 0.00 0.00 0.00 4.09
261 262 5.705609 TTCATTCCTACAAACCAAAGAGC 57.294 39.130 0.00 0.00 0.00 4.09
262 263 7.177392 AGGATTTCATTCCTACAAACCAAAGAG 59.823 37.037 0.00 0.00 44.50 2.85
263 264 7.010160 AGGATTTCATTCCTACAAACCAAAGA 58.990 34.615 0.00 0.00 44.50 2.52
264 265 7.232118 AGGATTTCATTCCTACAAACCAAAG 57.768 36.000 0.00 0.00 44.50 2.77
277 278 7.170965 TGCTCCATAGGAATAGGATTTCATTC 58.829 38.462 0.00 0.00 0.00 2.67
278 279 7.095183 TGCTCCATAGGAATAGGATTTCATT 57.905 36.000 0.00 0.00 0.00 2.57
279 280 6.708885 TGCTCCATAGGAATAGGATTTCAT 57.291 37.500 0.00 0.00 0.00 2.57
280 281 6.514012 TTGCTCCATAGGAATAGGATTTCA 57.486 37.500 0.00 0.00 0.00 2.69
281 282 7.887495 AGATTTGCTCCATAGGAATAGGATTTC 59.113 37.037 0.00 0.00 32.57 2.17
282 283 7.763613 AGATTTGCTCCATAGGAATAGGATTT 58.236 34.615 0.00 0.00 32.57 2.17
283 284 7.340531 AGATTTGCTCCATAGGAATAGGATT 57.659 36.000 0.00 0.00 32.57 3.01
284 285 6.966637 AGATTTGCTCCATAGGAATAGGAT 57.033 37.500 0.00 0.00 32.57 3.24
285 286 6.240002 GGAAGATTTGCTCCATAGGAATAGGA 60.240 42.308 0.00 0.00 32.57 2.94
286 287 5.942826 GGAAGATTTGCTCCATAGGAATAGG 59.057 44.000 0.00 0.00 32.57 2.57
287 288 6.777782 AGGAAGATTTGCTCCATAGGAATAG 58.222 40.000 0.00 0.00 32.57 1.73
288 289 6.770286 AGGAAGATTTGCTCCATAGGAATA 57.230 37.500 0.00 0.00 32.57 1.75
289 290 5.659849 AGGAAGATTTGCTCCATAGGAAT 57.340 39.130 0.00 0.00 32.57 3.01
290 291 6.240002 GGATAGGAAGATTTGCTCCATAGGAA 60.240 42.308 0.00 0.00 31.99 3.36
291 292 5.249393 GGATAGGAAGATTTGCTCCATAGGA 59.751 44.000 0.00 0.00 31.99 2.94
292 293 5.250313 AGGATAGGAAGATTTGCTCCATAGG 59.750 44.000 0.00 0.00 31.99 2.57
293 294 6.371595 AGGATAGGAAGATTTGCTCCATAG 57.628 41.667 0.00 0.00 31.99 2.23
294 295 6.329986 TGAAGGATAGGAAGATTTGCTCCATA 59.670 38.462 0.00 0.00 31.99 2.74
295 296 5.133322 TGAAGGATAGGAAGATTTGCTCCAT 59.867 40.000 0.00 0.00 31.99 3.41
296 297 4.474651 TGAAGGATAGGAAGATTTGCTCCA 59.525 41.667 0.00 0.00 31.99 3.86
297 298 4.819088 GTGAAGGATAGGAAGATTTGCTCC 59.181 45.833 0.00 0.00 31.99 4.70
298 299 5.431765 TGTGAAGGATAGGAAGATTTGCTC 58.568 41.667 0.00 0.00 31.99 4.26
299 300 5.441718 TGTGAAGGATAGGAAGATTTGCT 57.558 39.130 0.00 0.00 34.84 3.91
300 301 6.705863 AATGTGAAGGATAGGAAGATTTGC 57.294 37.500 0.00 0.00 0.00 3.68
301 302 8.284945 TGAAATGTGAAGGATAGGAAGATTTG 57.715 34.615 0.00 0.00 0.00 2.32
303 304 9.790344 CTATGAAATGTGAAGGATAGGAAGATT 57.210 33.333 0.00 0.00 0.00 2.40
304 305 8.381636 CCTATGAAATGTGAAGGATAGGAAGAT 58.618 37.037 0.00 0.00 36.16 2.40
305 306 7.568738 TCCTATGAAATGTGAAGGATAGGAAGA 59.431 37.037 0.00 0.00 38.86 2.87
306 307 7.739825 TCCTATGAAATGTGAAGGATAGGAAG 58.260 38.462 0.00 0.00 38.86 3.46
307 308 7.690454 TCCTATGAAATGTGAAGGATAGGAA 57.310 36.000 0.00 0.00 38.86 3.36
308 309 7.690454 TTCCTATGAAATGTGAAGGATAGGA 57.310 36.000 0.00 0.00 39.66 2.94
309 310 8.752005 TTTTCCTATGAAATGTGAAGGATAGG 57.248 34.615 0.00 0.00 40.08 2.57
336 337 8.934023 TTTCCATTGAGTCTAGGTTAATGTTT 57.066 30.769 8.63 0.00 0.00 2.83
337 338 8.934023 TTTTCCATTGAGTCTAGGTTAATGTT 57.066 30.769 8.63 0.00 0.00 2.71
338 339 8.934023 TTTTTCCATTGAGTCTAGGTTAATGT 57.066 30.769 8.63 0.00 0.00 2.71
360 361 8.869109 TCCTTTGTTTCACATCATAGGATTTTT 58.131 29.630 0.00 0.00 37.06 1.94
361 362 8.306761 GTCCTTTGTTTCACATCATAGGATTTT 58.693 33.333 7.39 0.00 41.26 1.82
362 363 7.451255 TGTCCTTTGTTTCACATCATAGGATTT 59.549 33.333 7.39 0.00 41.26 2.17
363 364 6.947733 TGTCCTTTGTTTCACATCATAGGATT 59.052 34.615 7.39 0.00 41.26 3.01
364 365 6.484288 TGTCCTTTGTTTCACATCATAGGAT 58.516 36.000 7.39 0.00 41.26 3.24
365 366 5.875224 TGTCCTTTGTTTCACATCATAGGA 58.125 37.500 0.00 0.00 38.66 2.94
366 367 6.600822 AGATGTCCTTTGTTTCACATCATAGG 59.399 38.462 12.21 0.00 45.13 2.57
367 368 7.551974 AGAGATGTCCTTTGTTTCACATCATAG 59.448 37.037 12.21 0.00 45.13 2.23
368 369 7.397221 AGAGATGTCCTTTGTTTCACATCATA 58.603 34.615 12.21 0.00 45.13 2.15
369 370 6.243900 AGAGATGTCCTTTGTTTCACATCAT 58.756 36.000 12.21 0.00 45.13 2.45
370 371 5.624159 AGAGATGTCCTTTGTTTCACATCA 58.376 37.500 12.21 0.00 45.13 3.07
371 372 6.566197 AAGAGATGTCCTTTGTTTCACATC 57.434 37.500 3.21 3.21 43.70 3.06
372 373 6.966534 AAAGAGATGTCCTTTGTTTCACAT 57.033 33.333 0.00 0.00 33.07 3.21
373 374 6.376864 TGAAAAGAGATGTCCTTTGTTTCACA 59.623 34.615 0.00 0.00 34.42 3.58
374 375 6.795399 TGAAAAGAGATGTCCTTTGTTTCAC 58.205 36.000 0.00 0.00 34.42 3.18
375 376 7.587037 ATGAAAAGAGATGTCCTTTGTTTCA 57.413 32.000 0.00 0.00 35.56 2.69
378 379 8.743714 GGAATATGAAAAGAGATGTCCTTTGTT 58.256 33.333 0.00 0.00 34.42 2.83
379 380 8.112183 AGGAATATGAAAAGAGATGTCCTTTGT 58.888 33.333 0.00 0.00 34.42 2.83
380 381 8.517062 AGGAATATGAAAAGAGATGTCCTTTG 57.483 34.615 0.00 0.00 34.42 2.77
381 382 9.620259 GTAGGAATATGAAAAGAGATGTCCTTT 57.380 33.333 0.00 0.00 34.80 3.11
382 383 8.997734 AGTAGGAATATGAAAAGAGATGTCCTT 58.002 33.333 0.00 0.00 34.80 3.36
383 384 8.560124 AGTAGGAATATGAAAAGAGATGTCCT 57.440 34.615 0.00 0.00 36.88 3.85
384 385 8.424918 TGAGTAGGAATATGAAAAGAGATGTCC 58.575 37.037 0.00 0.00 0.00 4.02
385 386 9.995003 ATGAGTAGGAATATGAAAAGAGATGTC 57.005 33.333 0.00 0.00 0.00 3.06
404 405 7.160049 ACATGCATCTCAAATCCTATGAGTAG 58.840 38.462 0.00 0.11 43.77 2.57
405 406 7.071069 ACATGCATCTCAAATCCTATGAGTA 57.929 36.000 0.00 0.00 43.77 2.59
406 407 5.938279 ACATGCATCTCAAATCCTATGAGT 58.062 37.500 0.00 0.00 43.77 3.41
407 408 5.995897 TGACATGCATCTCAAATCCTATGAG 59.004 40.000 1.73 0.00 44.53 2.90
408 409 5.932455 TGACATGCATCTCAAATCCTATGA 58.068 37.500 1.73 0.00 0.00 2.15
409 410 6.819397 ATGACATGCATCTCAAATCCTATG 57.181 37.500 8.81 0.00 28.85 2.23
422 423 7.720074 AGTCATAGAAAATGAGATGACATGCAT 59.280 33.333 14.37 0.00 46.94 3.96
423 424 7.052248 AGTCATAGAAAATGAGATGACATGCA 58.948 34.615 14.37 0.00 46.94 3.96
424 425 7.493743 AGTCATAGAAAATGAGATGACATGC 57.506 36.000 14.37 0.00 46.94 4.06
427 428 9.730705 AGAAAAGTCATAGAAAATGAGATGACA 57.269 29.630 14.37 0.00 46.94 3.58
460 461 9.421399 CTTTGGTTCATAGGGTAGGAAAATTAT 57.579 33.333 0.00 0.00 29.56 1.28
461 462 7.837187 CCTTTGGTTCATAGGGTAGGAAAATTA 59.163 37.037 0.00 0.00 30.68 1.40
462 463 6.667848 CCTTTGGTTCATAGGGTAGGAAAATT 59.332 38.462 0.00 0.00 30.68 1.82
463 464 6.011096 TCCTTTGGTTCATAGGGTAGGAAAAT 60.011 38.462 4.94 0.00 34.20 1.82
464 465 5.313772 TCCTTTGGTTCATAGGGTAGGAAAA 59.686 40.000 4.94 0.00 34.20 2.29
465 466 4.853276 TCCTTTGGTTCATAGGGTAGGAAA 59.147 41.667 4.94 0.00 34.20 3.13
466 467 4.440808 TCCTTTGGTTCATAGGGTAGGAA 58.559 43.478 4.94 0.00 34.20 3.36
467 468 4.037927 CTCCTTTGGTTCATAGGGTAGGA 58.962 47.826 4.94 0.00 34.20 2.94
468 469 3.136626 CCTCCTTTGGTTCATAGGGTAGG 59.863 52.174 4.94 2.50 34.20 3.18
469 470 3.780850 ACCTCCTTTGGTTCATAGGGTAG 59.219 47.826 4.94 0.00 36.89 3.18
470 471 3.778629 GACCTCCTTTGGTTCATAGGGTA 59.221 47.826 4.94 0.00 41.00 3.69
471 472 2.576648 GACCTCCTTTGGTTCATAGGGT 59.423 50.000 4.94 0.00 41.00 4.34
472 473 2.846827 AGACCTCCTTTGGTTCATAGGG 59.153 50.000 4.94 0.00 41.00 3.53
473 474 3.519510 TGAGACCTCCTTTGGTTCATAGG 59.480 47.826 0.00 0.00 41.00 2.57
474 475 4.826274 TGAGACCTCCTTTGGTTCATAG 57.174 45.455 0.00 0.00 41.00 2.23
475 476 5.500234 CATTGAGACCTCCTTTGGTTCATA 58.500 41.667 0.00 0.00 41.00 2.15
476 477 4.338879 CATTGAGACCTCCTTTGGTTCAT 58.661 43.478 0.00 0.00 41.00 2.57
477 478 3.754965 CATTGAGACCTCCTTTGGTTCA 58.245 45.455 0.00 0.00 41.00 3.18
478 479 2.489722 GCATTGAGACCTCCTTTGGTTC 59.510 50.000 0.00 0.00 41.00 3.62
479 480 2.108952 AGCATTGAGACCTCCTTTGGTT 59.891 45.455 0.00 0.00 41.00 3.67
480 481 1.707427 AGCATTGAGACCTCCTTTGGT 59.293 47.619 0.00 0.00 44.10 3.67
481 482 2.503895 AGCATTGAGACCTCCTTTGG 57.496 50.000 0.00 0.00 0.00 3.28
495 496 3.093814 TCATGATGTTGGAGCAAGCATT 58.906 40.909 0.00 0.00 0.00 3.56
496 497 2.730382 TCATGATGTTGGAGCAAGCAT 58.270 42.857 0.00 0.00 0.00 3.79
497 498 2.203470 TCATGATGTTGGAGCAAGCA 57.797 45.000 0.00 0.00 0.00 3.91
498 499 3.795623 AATCATGATGTTGGAGCAAGC 57.204 42.857 9.46 0.00 0.00 4.01
499 500 5.579511 GGAAAAATCATGATGTTGGAGCAAG 59.420 40.000 11.97 0.00 0.00 4.01
500 501 5.011840 TGGAAAAATCATGATGTTGGAGCAA 59.988 36.000 11.97 0.00 0.00 3.91
501 502 4.527427 TGGAAAAATCATGATGTTGGAGCA 59.473 37.500 11.97 0.00 0.00 4.26
502 503 5.075858 TGGAAAAATCATGATGTTGGAGC 57.924 39.130 11.97 2.84 0.00 4.70
503 504 8.472413 ACTAATGGAAAAATCATGATGTTGGAG 58.528 33.333 11.97 6.14 0.00 3.86
504 505 8.365060 ACTAATGGAAAAATCATGATGTTGGA 57.635 30.769 11.97 0.00 0.00 3.53
505 506 7.707893 GGACTAATGGAAAAATCATGATGTTGG 59.292 37.037 11.97 3.04 0.00 3.77
506 507 8.252417 TGGACTAATGGAAAAATCATGATGTTG 58.748 33.333 11.97 0.60 0.00 3.33
507 508 8.365060 TGGACTAATGGAAAAATCATGATGTT 57.635 30.769 9.46 7.20 0.00 2.71
508 509 7.959658 TGGACTAATGGAAAAATCATGATGT 57.040 32.000 9.46 0.00 0.00 3.06
509 510 8.857098 AGATGGACTAATGGAAAAATCATGATG 58.143 33.333 9.46 0.00 0.00 3.07
511 512 9.565090 CTAGATGGACTAATGGAAAAATCATGA 57.435 33.333 0.00 0.00 0.00 3.07
512 513 8.295288 GCTAGATGGACTAATGGAAAAATCATG 58.705 37.037 0.00 0.00 0.00 3.07
513 514 8.000709 TGCTAGATGGACTAATGGAAAAATCAT 58.999 33.333 0.00 0.00 0.00 2.45
514 515 7.345691 TGCTAGATGGACTAATGGAAAAATCA 58.654 34.615 0.00 0.00 0.00 2.57
515 516 7.040823 CCTGCTAGATGGACTAATGGAAAAATC 60.041 40.741 0.00 0.00 0.00 2.17
516 517 6.774656 CCTGCTAGATGGACTAATGGAAAAAT 59.225 38.462 0.00 0.00 0.00 1.82
517 518 6.069673 TCCTGCTAGATGGACTAATGGAAAAA 60.070 38.462 0.00 0.00 0.00 1.94
518 519 5.428457 TCCTGCTAGATGGACTAATGGAAAA 59.572 40.000 0.00 0.00 0.00 2.29
519 520 4.968719 TCCTGCTAGATGGACTAATGGAAA 59.031 41.667 0.00 0.00 0.00 3.13
520 521 4.556697 TCCTGCTAGATGGACTAATGGAA 58.443 43.478 0.00 0.00 0.00 3.53
521 522 4.155709 CTCCTGCTAGATGGACTAATGGA 58.844 47.826 0.00 0.00 0.00 3.41
522 523 3.306641 GCTCCTGCTAGATGGACTAATGG 60.307 52.174 0.00 0.00 36.03 3.16
523 524 3.323115 TGCTCCTGCTAGATGGACTAATG 59.677 47.826 0.00 0.00 40.48 1.90
524 525 3.581101 TGCTCCTGCTAGATGGACTAAT 58.419 45.455 0.00 0.00 40.48 1.73
525 526 3.032265 TGCTCCTGCTAGATGGACTAA 57.968 47.619 0.00 0.00 40.48 2.24
526 527 2.755952 TGCTCCTGCTAGATGGACTA 57.244 50.000 0.00 0.00 40.48 2.59
527 528 1.761784 CTTGCTCCTGCTAGATGGACT 59.238 52.381 0.00 0.00 43.04 3.85
528 529 1.809651 GCTTGCTCCTGCTAGATGGAC 60.810 57.143 0.00 0.00 43.04 4.02
529 530 0.467384 GCTTGCTCCTGCTAGATGGA 59.533 55.000 0.00 0.00 43.04 3.41
530 531 0.879400 CGCTTGCTCCTGCTAGATGG 60.879 60.000 0.00 0.00 43.04 3.51
531 532 0.103755 TCGCTTGCTCCTGCTAGATG 59.896 55.000 0.00 0.00 43.04 2.90
532 533 0.388659 CTCGCTTGCTCCTGCTAGAT 59.611 55.000 0.00 0.00 43.04 1.98
533 534 1.812525 CTCGCTTGCTCCTGCTAGA 59.187 57.895 0.00 0.00 43.04 2.43
534 535 1.882167 GCTCGCTTGCTCCTGCTAG 60.882 63.158 0.00 0.00 43.20 3.42
535 536 2.185350 GCTCGCTTGCTCCTGCTA 59.815 61.111 0.00 0.00 40.48 3.49
536 537 3.704207 AGCTCGCTTGCTCCTGCT 61.704 61.111 0.00 0.00 39.34 4.24
543 544 0.863957 GAGTAGACGAGCTCGCTTGC 60.864 60.000 34.83 24.73 44.43 4.01
544 545 0.730265 AGAGTAGACGAGCTCGCTTG 59.270 55.000 34.83 10.53 44.43 4.01
545 546 1.935199 GTAGAGTAGACGAGCTCGCTT 59.065 52.381 34.83 24.53 44.43 4.68
546 547 1.574134 GTAGAGTAGACGAGCTCGCT 58.426 55.000 34.83 30.52 44.43 4.93
547 548 0.582960 GGTAGAGTAGACGAGCTCGC 59.417 60.000 34.83 25.90 44.43 5.03
548 549 1.219646 GGGTAGAGTAGACGAGCTCG 58.780 60.000 33.45 33.45 46.33 5.03
549 550 2.215196 CTGGGTAGAGTAGACGAGCTC 58.785 57.143 2.73 2.73 0.00 4.09
550 551 1.747898 GCTGGGTAGAGTAGACGAGCT 60.748 57.143 0.00 0.00 0.00 4.09
551 552 0.664224 GCTGGGTAGAGTAGACGAGC 59.336 60.000 0.00 0.00 0.00 5.03
552 553 2.039818 TGCTGGGTAGAGTAGACGAG 57.960 55.000 0.00 0.00 0.00 4.18
553 554 2.730934 ATGCTGGGTAGAGTAGACGA 57.269 50.000 0.00 0.00 0.00 4.20
554 555 2.952978 AGAATGCTGGGTAGAGTAGACG 59.047 50.000 0.00 0.00 0.00 4.18
555 556 5.346181 AAAGAATGCTGGGTAGAGTAGAC 57.654 43.478 0.00 0.00 0.00 2.59
556 557 8.958060 ATATAAAGAATGCTGGGTAGAGTAGA 57.042 34.615 0.00 0.00 0.00 2.59
603 604 8.693625 GGGAGTATAAAGCTAGTTACTCAAGAA 58.306 37.037 21.74 0.00 41.39 2.52
604 605 7.013083 CGGGAGTATAAAGCTAGTTACTCAAGA 59.987 40.741 21.74 0.00 41.39 3.02
605 606 7.140048 CGGGAGTATAAAGCTAGTTACTCAAG 58.860 42.308 21.74 14.80 41.39 3.02
606 607 6.040166 CCGGGAGTATAAAGCTAGTTACTCAA 59.960 42.308 21.74 0.00 41.39 3.02
607 608 5.533903 CCGGGAGTATAAAGCTAGTTACTCA 59.466 44.000 21.74 0.00 41.39 3.41
608 609 5.048154 CCCGGGAGTATAAAGCTAGTTACTC 60.048 48.000 18.48 16.09 39.74 2.59
609 610 4.831710 CCCGGGAGTATAAAGCTAGTTACT 59.168 45.833 18.48 0.00 0.00 2.24
610 611 4.586421 ACCCGGGAGTATAAAGCTAGTTAC 59.414 45.833 32.02 0.00 0.00 2.50
611 612 4.808042 ACCCGGGAGTATAAAGCTAGTTA 58.192 43.478 32.02 0.00 0.00 2.24
612 613 3.650948 ACCCGGGAGTATAAAGCTAGTT 58.349 45.455 32.02 0.00 0.00 2.24
613 614 3.325359 ACCCGGGAGTATAAAGCTAGT 57.675 47.619 32.02 0.00 0.00 2.57
614 615 4.405548 ACTACCCGGGAGTATAAAGCTAG 58.594 47.826 32.02 16.47 0.00 3.42
615 616 4.459852 ACTACCCGGGAGTATAAAGCTA 57.540 45.455 32.02 3.35 0.00 3.32
616 617 3.325359 ACTACCCGGGAGTATAAAGCT 57.675 47.619 32.02 1.99 0.00 3.74
617 618 4.148079 AGTACTACCCGGGAGTATAAAGC 58.852 47.826 32.02 16.31 32.21 3.51
618 619 6.538263 ACTAGTACTACCCGGGAGTATAAAG 58.462 44.000 32.02 24.44 32.21 1.85
619 620 6.515512 ACTAGTACTACCCGGGAGTATAAA 57.484 41.667 32.02 16.49 32.21 1.40
620 621 7.457852 TCATACTAGTACTACCCGGGAGTATAA 59.542 40.741 32.02 18.60 32.21 0.98
621 622 6.959954 TCATACTAGTACTACCCGGGAGTATA 59.040 42.308 32.02 17.76 32.21 1.47
622 623 5.787494 TCATACTAGTACTACCCGGGAGTAT 59.213 44.000 32.02 23.53 32.21 2.12
623 624 5.155161 TCATACTAGTACTACCCGGGAGTA 58.845 45.833 32.02 25.50 0.00 2.59
624 625 3.976654 TCATACTAGTACTACCCGGGAGT 59.023 47.826 32.02 26.58 0.00 3.85
625 626 4.630644 TCATACTAGTACTACCCGGGAG 57.369 50.000 32.02 22.19 0.00 4.30
626 627 5.387113 TTTCATACTAGTACTACCCGGGA 57.613 43.478 32.02 10.31 0.00 5.14
627 628 5.360714 TGTTTTCATACTAGTACTACCCGGG 59.639 44.000 22.25 22.25 0.00 5.73
628 629 6.455360 TGTTTTCATACTAGTACTACCCGG 57.545 41.667 4.31 0.00 0.00 5.73
659 660 2.632377 CACACTGATTTAGGCCGACAT 58.368 47.619 0.00 0.00 0.00 3.06
685 688 3.264193 ACTCATGTCCAGCAAACCAGATA 59.736 43.478 0.00 0.00 0.00 1.98
711 718 2.031919 GCGTGGACATGGACACCA 59.968 61.111 14.08 7.53 38.19 4.17
712 719 2.746277 GGCGTGGACATGGACACC 60.746 66.667 14.08 8.44 34.18 4.16
713 720 3.118454 CGGCGTGGACATGGACAC 61.118 66.667 10.87 10.87 0.00 3.67
717 724 2.094757 TATAGGCGGCGTGGACATGG 62.095 60.000 9.37 0.00 0.00 3.66
718 725 0.249699 TTATAGGCGGCGTGGACATG 60.250 55.000 9.37 0.00 0.00 3.21
719 726 0.466543 TTTATAGGCGGCGTGGACAT 59.533 50.000 9.37 0.00 0.00 3.06
720 727 0.249676 TTTTATAGGCGGCGTGGACA 59.750 50.000 9.37 0.00 0.00 4.02
721 728 1.371595 TTTTTATAGGCGGCGTGGAC 58.628 50.000 9.37 0.00 0.00 4.02
773 792 3.706594 AGATGTTTGGCTAGTAGCAGCTA 59.293 43.478 23.24 0.00 44.75 3.32
786 812 2.465813 TGGGGGCATAAAGATGTTTGG 58.534 47.619 0.00 0.00 35.30 3.28
800 826 3.431626 GCATTATTTGGTTAGTTGGGGGC 60.432 47.826 0.00 0.00 0.00 5.80
825 851 3.993234 CGATGCTGCGATCGCCAC 61.993 66.667 35.12 26.61 38.90 5.01
927 955 4.440802 GGTCTAGTGGTAGAATGCTCTGTG 60.441 50.000 0.00 0.00 37.02 3.66
1098 1137 3.438434 GCTTTGCTTAGGAAGAGGTGAAG 59.562 47.826 0.00 0.00 0.00 3.02
1174 1225 7.095313 GCATCAGAACCAGATAATATGTCACTG 60.095 40.741 0.00 0.00 0.00 3.66
1191 1243 1.352156 GACACCGACGGCATCAGAAC 61.352 60.000 15.39 0.00 0.00 3.01
1219 1273 1.078143 GGGAAGAAGTCGGCTGCAT 60.078 57.895 0.00 0.00 0.00 3.96
1439 1493 2.680352 GGCACCCCTCGTCTGAGA 60.680 66.667 0.00 0.00 45.57 3.27
1451 1505 1.749063 AGCTTTATTTTAGGCGGCACC 59.251 47.619 13.08 0.00 39.61 5.01
1505 1567 2.493713 GTATAGCACGACCCACAGAG 57.506 55.000 0.00 0.00 0.00 3.35
1780 1926 1.599518 TTGTGACTTGCCGCCGAAT 60.600 52.632 0.00 0.00 0.00 3.34
1869 2021 1.136529 CGTGACTGCAGACACATTTCG 60.137 52.381 36.20 24.12 39.92 3.46
1968 2121 9.354673 TGAAGTTTTGAGAATAATGAGGTTCTT 57.645 29.630 0.00 0.00 34.97 2.52
2106 2260 4.281657 AGTACTATGTGATGCTGAGGTGA 58.718 43.478 0.00 0.00 0.00 4.02
2110 2264 7.601073 TTTTCAAGTACTATGTGATGCTGAG 57.399 36.000 0.00 0.00 0.00 3.35
2148 2303 1.014352 AATTCAGCCCGTTCGTATGC 58.986 50.000 0.00 0.00 0.00 3.14
2191 2347 6.923508 AGGTTGATTTTCGAAAATTTCAGACC 59.076 34.615 30.92 28.23 38.64 3.85
2321 2478 2.096466 TGAAGTTTTGATGTGCGCTACG 60.096 45.455 9.73 0.00 0.00 3.51
2327 2484 5.921976 TGTTCATGATGAAGTTTTGATGTGC 59.078 36.000 8.33 0.00 37.00 4.57
2365 2522 7.676043 AGGGATGCATACTAGTACATGATACTT 59.324 37.037 9.27 0.00 0.00 2.24
2366 2523 7.185565 AGGGATGCATACTAGTACATGATACT 58.814 38.462 9.27 6.46 0.00 2.12
2367 2524 7.411486 AGGGATGCATACTAGTACATGATAC 57.589 40.000 9.27 0.00 0.00 2.24
2369 2526 9.889388 ATATAGGGATGCATACTAGTACATGAT 57.111 33.333 9.27 0.00 0.00 2.45
2370 2527 9.136323 CATATAGGGATGCATACTAGTACATGA 57.864 37.037 9.27 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.