Multiple sequence alignment - TraesCS1A01G265100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G265100 chr1A 100.000 2561 0 0 1 2561 460677937 460675377 0.000000e+00 4730.0
1 TraesCS1A01G265100 chr1A 81.111 270 47 3 1 267 449845715 449845983 2.000000e-51 213.0
2 TraesCS1A01G265100 chr1A 86.528 193 26 0 380 572 460677486 460677294 2.000000e-51 213.0
3 TraesCS1A01G265100 chr1A 86.528 193 26 0 452 644 460677558 460677366 2.000000e-51 213.0
4 TraesCS1A01G265100 chr1A 90.789 76 7 0 499 574 311035103 311035178 4.510000e-18 102.0
5 TraesCS1A01G265100 chr1B 90.357 840 41 21 1750 2561 483373144 483372317 0.000000e+00 1066.0
6 TraesCS1A01G265100 chr1B 89.695 786 41 15 812 1564 483373922 483373144 0.000000e+00 966.0
7 TraesCS1A01G265100 chr1B 87.979 574 67 2 1 572 483382326 483381753 0.000000e+00 676.0
8 TraesCS1A01G265100 chr1B 90.452 199 19 0 453 651 483381944 483381746 1.950000e-66 263.0
9 TraesCS1A01G265100 chr1B 79.667 300 55 5 1 295 312555066 312554768 7.180000e-51 211.0
10 TraesCS1A01G265100 chr1B 85.950 121 17 0 380 500 483381873 483381753 2.070000e-26 130.0
11 TraesCS1A01G265100 chr1D 88.966 870 48 19 726 1564 361116703 361115851 0.000000e+00 1031.0
12 TraesCS1A01G265100 chr1D 88.863 853 42 20 1750 2561 361115851 361115011 0.000000e+00 1000.0
13 TraesCS1A01G265100 chr1D 78.767 292 57 4 1 288 218683968 218683678 9.350000e-45 191.0
14 TraesCS1A01G265100 chr1D 92.308 39 3 0 1586 1624 436331389 436331427 3.560000e-04 56.5
15 TraesCS1A01G265100 chr3D 92.237 219 17 0 1196 1414 245533787 245534005 6.880000e-81 311.0
16 TraesCS1A01G265100 chr3D 92.105 76 6 0 499 574 90203846 90203921 9.690000e-20 108.0
17 TraesCS1A01G265100 chr2D 80.000 300 54 5 2 297 14521572 14521869 1.540000e-52 217.0
18 TraesCS1A01G265100 chr2D 91.753 97 8 0 570 666 14027900 14027804 4.440000e-28 135.0
19 TraesCS1A01G265100 chr2D 91.000 100 9 0 572 671 39435557 39435656 4.440000e-28 135.0
20 TraesCS1A01G265100 chr5D 80.882 272 48 3 1 269 410345990 410345720 7.180000e-51 211.0
21 TraesCS1A01G265100 chr5D 85.470 117 12 3 1626 1740 446521186 446521073 1.610000e-22 117.0
22 TraesCS1A01G265100 chr7D 78.799 283 55 4 6 284 30755829 30756110 4.350000e-43 185.0
23 TraesCS1A01G265100 chr7D 92.135 89 7 0 586 674 185113670 185113582 2.680000e-25 126.0
24 TraesCS1A01G265100 chr4D 77.703 296 54 8 1 286 47528715 47529008 1.220000e-38 171.0
25 TraesCS1A01G265100 chr3B 76.645 304 64 6 4 302 487782785 487782484 7.330000e-36 161.0
26 TraesCS1A01G265100 chr2B 88.095 126 13 1 449 574 39093475 39093352 5.710000e-32 148.0
27 TraesCS1A01G265100 chr2B 97.368 76 2 0 427 502 42732867 42732942 2.070000e-26 130.0
28 TraesCS1A01G265100 chr2B 96.053 76 3 0 427 502 42800717 42800792 9.620000e-25 124.0
29 TraesCS1A01G265100 chr3A 91.176 102 8 1 570 671 686257363 686257263 1.240000e-28 137.0
30 TraesCS1A01G265100 chr3A 92.105 76 5 1 500 574 724469720 724469795 3.480000e-19 106.0
31 TraesCS1A01G265100 chr2A 90.099 101 10 0 577 677 6194302 6194202 5.750000e-27 132.0
32 TraesCS1A01G265100 chr2A 88.119 101 12 0 577 677 6094646 6094546 1.240000e-23 121.0
33 TraesCS1A01G265100 chr2A 88.119 101 12 0 577 677 6142414 6142314 1.240000e-23 121.0
34 TraesCS1A01G265100 chrUn 96.053 76 3 0 427 502 468378426 468378351 9.620000e-25 124.0
35 TraesCS1A01G265100 chr5B 94.203 69 4 0 500 568 575811544 575811612 3.480000e-19 106.0
36 TraesCS1A01G265100 chr7B 85.437 103 11 3 1629 1728 658349763 658349662 1.250000e-18 104.0
37 TraesCS1A01G265100 chr6B 90.000 70 3 2 1629 1697 674562237 674562171 1.260000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G265100 chr1A 460675377 460677937 2560 True 1718.666667 4730 91.018667 1 2561 3 chr1A.!!$R1 2560
1 TraesCS1A01G265100 chr1B 483372317 483373922 1605 True 1016.000000 1066 90.026000 812 2561 2 chr1B.!!$R2 1749
2 TraesCS1A01G265100 chr1B 483381746 483382326 580 True 356.333333 676 88.127000 1 651 3 chr1B.!!$R3 650
3 TraesCS1A01G265100 chr1D 361115011 361116703 1692 True 1015.500000 1031 88.914500 726 2561 2 chr1D.!!$R2 1835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.099082 CCGACTCCAGTAAGAGCGAC 59.901 60.0 0.0 0.0 37.39 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1740 0.036022 GGCTGATATGCTCCTGGTCC 59.964 60.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.811722 TCATGTGACGAGATTTTGTGC 57.188 42.857 0.00 0.00 0.00 4.57
24 25 1.197721 GTGACGAGATTTTGTGCCAGG 59.802 52.381 0.00 0.00 0.00 4.45
27 28 1.238439 CGAGATTTTGTGCCAGGTGT 58.762 50.000 0.00 0.00 0.00 4.16
51 52 5.378230 TCAGATCTATGCAAGGGTTCAAT 57.622 39.130 0.00 0.00 0.00 2.57
53 54 5.104402 TCAGATCTATGCAAGGGTTCAATGA 60.104 40.000 0.00 0.00 0.00 2.57
55 56 6.264744 CAGATCTATGCAAGGGTTCAATGATT 59.735 38.462 0.00 0.00 0.00 2.57
57 58 6.942532 TCTATGCAAGGGTTCAATGATTAC 57.057 37.500 0.00 0.00 0.00 1.89
60 61 4.075682 TGCAAGGGTTCAATGATTACGAA 58.924 39.130 0.00 0.00 0.00 3.85
64 65 5.818136 AGGGTTCAATGATTACGAATGTG 57.182 39.130 0.00 0.00 0.00 3.21
65 66 4.096382 AGGGTTCAATGATTACGAATGTGC 59.904 41.667 0.00 0.00 0.00 4.57
87 88 3.430929 CCTTCAGGTCGATGGTCCTTAAG 60.431 52.174 7.61 7.61 35.82 1.85
112 113 0.235926 GTGCACAAAGACTTCTCGGC 59.764 55.000 13.17 0.00 0.00 5.54
114 115 0.514691 GCACAAAGACTTCTCGGCTG 59.485 55.000 0.00 0.00 0.00 4.85
131 132 2.143122 GCTGTCATCGACAAGGTCAAA 58.857 47.619 0.00 0.00 42.26 2.69
140 141 0.834612 ACAAGGTCAAACCGACTCCA 59.165 50.000 0.00 0.00 44.90 3.86
150 151 0.322277 ACCGACTCCAGTAAGAGCGA 60.322 55.000 0.00 0.00 37.39 4.93
151 152 0.099082 CCGACTCCAGTAAGAGCGAC 59.901 60.000 0.00 0.00 37.39 5.19
156 157 1.402259 CTCCAGTAAGAGCGACGACAT 59.598 52.381 0.00 0.00 0.00 3.06
157 158 1.400846 TCCAGTAAGAGCGACGACATC 59.599 52.381 0.00 0.00 0.00 3.06
182 183 3.777925 CGGCGGCTTGTTCTGACG 61.778 66.667 7.61 0.00 37.53 4.35
183 184 2.357034 GGCGGCTTGTTCTGACGA 60.357 61.111 0.00 0.00 38.36 4.20
186 187 1.891060 GCGGCTTGTTCTGACGACTG 61.891 60.000 0.00 0.00 38.36 3.51
191 192 2.726760 GCTTGTTCTGACGACTGTAGTG 59.273 50.000 0.00 0.00 0.00 2.74
206 207 0.899720 TAGTGGTCATTCGGTGGTCC 59.100 55.000 0.00 0.00 0.00 4.46
210 211 1.078426 GTCATTCGGTGGTCCCAGG 60.078 63.158 0.00 0.00 0.00 4.45
225 226 6.881602 GTGGTCCCAGGATCTCAATATATTTC 59.118 42.308 0.00 0.00 0.00 2.17
253 254 5.824904 ATGTTTGAGATGCCATGTACTTC 57.175 39.130 0.00 0.00 0.00 3.01
255 256 3.998913 TTGAGATGCCATGTACTTCCA 57.001 42.857 0.00 0.00 0.00 3.53
277 279 9.958180 TTCCAATGAACTTTTACATAGATCTGA 57.042 29.630 5.18 0.00 0.00 3.27
288 290 7.807977 TTACATAGATCTGATCTTTTTGGCC 57.192 36.000 23.98 0.00 40.76 5.36
294 296 5.776716 AGATCTGATCTTTTTGGCCAAGAAA 59.223 36.000 20.81 19.51 35.76 2.52
296 298 5.846203 TCTGATCTTTTTGGCCAAGAAAAG 58.154 37.500 26.67 26.67 41.77 2.27
330 332 2.437413 CTTTTGGAGGGGACTAGTTGC 58.563 52.381 0.00 0.00 44.43 4.17
354 356 1.805943 TGTCACGAAGGATTGCATGTG 59.194 47.619 0.00 0.00 0.00 3.21
367 369 2.250031 TGCATGTGAGCTCCCATTTTT 58.750 42.857 9.16 0.00 34.99 1.94
368 370 2.231964 TGCATGTGAGCTCCCATTTTTC 59.768 45.455 9.16 0.55 34.99 2.29
378 380 6.883756 TGAGCTCCCATTTTTCTTTTGTTTTT 59.116 30.769 12.15 0.00 0.00 1.94
398 400 5.505173 TTTTAGAAATGCATGCTCTAGCC 57.495 39.130 20.33 3.42 41.18 3.93
399 401 2.723322 AGAAATGCATGCTCTAGCCA 57.277 45.000 20.33 0.00 41.18 4.75
400 402 3.008835 AGAAATGCATGCTCTAGCCAA 57.991 42.857 20.33 0.00 41.18 4.52
401 403 3.563223 AGAAATGCATGCTCTAGCCAAT 58.437 40.909 20.33 0.00 41.18 3.16
402 404 3.318275 AGAAATGCATGCTCTAGCCAATG 59.682 43.478 20.33 0.00 41.18 2.82
403 405 0.959553 ATGCATGCTCTAGCCAATGC 59.040 50.000 20.33 16.33 45.25 3.56
404 406 1.281960 GCATGCTCTAGCCAATGCG 59.718 57.895 11.37 0.00 39.50 4.73
405 407 1.162181 GCATGCTCTAGCCAATGCGA 61.162 55.000 11.37 0.00 39.50 5.10
406 408 1.520494 CATGCTCTAGCCAATGCGAT 58.480 50.000 0.00 0.00 44.33 4.58
407 409 1.463831 CATGCTCTAGCCAATGCGATC 59.536 52.381 0.00 0.00 44.33 3.69
408 410 0.465287 TGCTCTAGCCAATGCGATCA 59.535 50.000 0.00 0.00 44.33 2.92
409 411 1.134431 TGCTCTAGCCAATGCGATCAA 60.134 47.619 0.00 0.00 44.33 2.57
410 412 1.942657 GCTCTAGCCAATGCGATCAAA 59.057 47.619 0.00 0.00 44.33 2.69
411 413 2.355756 GCTCTAGCCAATGCGATCAAAA 59.644 45.455 0.00 0.00 44.33 2.44
412 414 3.004106 GCTCTAGCCAATGCGATCAAAAT 59.996 43.478 0.00 0.00 44.33 1.82
413 415 4.214119 GCTCTAGCCAATGCGATCAAAATA 59.786 41.667 0.00 0.00 44.33 1.40
414 416 5.673337 TCTAGCCAATGCGATCAAAATAC 57.327 39.130 0.00 0.00 44.33 1.89
415 417 5.368145 TCTAGCCAATGCGATCAAAATACT 58.632 37.500 0.00 0.00 44.33 2.12
416 418 4.297299 AGCCAATGCGATCAAAATACTG 57.703 40.909 0.00 0.00 44.33 2.74
417 419 3.947196 AGCCAATGCGATCAAAATACTGA 59.053 39.130 0.00 0.00 44.33 3.41
418 420 4.581824 AGCCAATGCGATCAAAATACTGAT 59.418 37.500 0.00 0.00 44.33 2.90
419 421 4.913924 GCCAATGCGATCAAAATACTGATC 59.086 41.667 3.92 3.92 45.57 2.92
420 422 5.278169 GCCAATGCGATCAAAATACTGATCT 60.278 40.000 10.85 0.00 46.43 2.75
421 423 6.140786 CCAATGCGATCAAAATACTGATCTG 58.859 40.000 10.85 0.00 46.43 2.90
422 424 5.936686 ATGCGATCAAAATACTGATCTGG 57.063 39.130 10.85 0.00 46.43 3.86
423 425 4.769688 TGCGATCAAAATACTGATCTGGT 58.230 39.130 10.85 1.23 46.43 4.00
424 426 5.912892 TGCGATCAAAATACTGATCTGGTA 58.087 37.500 10.85 3.42 46.43 3.25
425 427 5.985530 TGCGATCAAAATACTGATCTGGTAG 59.014 40.000 10.85 0.00 46.43 3.18
426 428 6.183360 TGCGATCAAAATACTGATCTGGTAGA 60.183 38.462 10.85 0.00 46.43 2.59
427 429 6.701841 GCGATCAAAATACTGATCTGGTAGAA 59.298 38.462 10.85 0.00 46.43 2.10
428 430 7.095857 GCGATCAAAATACTGATCTGGTAGAAG 60.096 40.741 10.85 0.00 46.43 2.85
429 431 8.138074 CGATCAAAATACTGATCTGGTAGAAGA 58.862 37.037 10.85 0.00 46.43 2.87
430 432 9.255304 GATCAAAATACTGATCTGGTAGAAGAC 57.745 37.037 4.49 0.00 45.56 3.01
431 433 8.367660 TCAAAATACTGATCTGGTAGAAGACT 57.632 34.615 4.49 0.00 0.00 3.24
432 434 8.816894 TCAAAATACTGATCTGGTAGAAGACTT 58.183 33.333 4.49 0.00 0.00 3.01
433 435 9.442047 CAAAATACTGATCTGGTAGAAGACTTT 57.558 33.333 4.49 0.00 0.00 2.66
436 438 9.442047 AATACTGATCTGGTAGAAGACTTTTTG 57.558 33.333 4.49 0.00 0.00 2.44
437 439 6.234177 ACTGATCTGGTAGAAGACTTTTTGG 58.766 40.000 4.49 0.00 0.00 3.28
438 440 5.003804 TGATCTGGTAGAAGACTTTTTGGC 58.996 41.667 0.00 0.00 0.00 4.52
439 441 4.706842 TCTGGTAGAAGACTTTTTGGCT 57.293 40.909 0.00 0.00 33.68 4.75
448 450 4.015872 AGACTTTTTGGCTTCGATACCA 57.984 40.909 2.91 2.91 0.00 3.25
449 451 4.589908 AGACTTTTTGGCTTCGATACCAT 58.410 39.130 7.67 0.00 35.42 3.55
450 452 4.396166 AGACTTTTTGGCTTCGATACCATG 59.604 41.667 7.67 0.00 35.42 3.66
451 453 4.079253 ACTTTTTGGCTTCGATACCATGT 58.921 39.130 7.67 3.34 35.42 3.21
464 466 2.795231 ACCATGTAGAAGTGCATGCT 57.205 45.000 20.33 0.00 43.45 3.79
487 489 3.333029 AGCCAATGCAACCAAAATACC 57.667 42.857 0.00 0.00 41.13 2.73
517 519 2.431057 GGAAGACCTCTTGGCTTCGATA 59.569 50.000 1.94 0.00 42.26 2.92
529 531 3.704566 TGGCTTCGATACCATGTAGAAGT 59.295 43.478 2.91 0.00 40.10 3.01
535 537 3.185188 CGATACCATGTAGAAGTGCATGC 59.815 47.826 11.82 11.82 43.45 4.06
540 542 4.102210 ACCATGTAGAAGTGCATGCTCTAT 59.898 41.667 21.70 15.63 43.45 1.98
544 546 3.472283 AGAAGTGCATGCTCTATCCAG 57.528 47.619 21.70 0.00 0.00 3.86
546 548 2.616634 AGTGCATGCTCTATCCAGTG 57.383 50.000 20.22 0.00 0.00 3.66
559 561 2.435372 TCCAGTGCAACCAAAAGACT 57.565 45.000 0.00 0.00 37.80 3.24
563 565 3.820467 CCAGTGCAACCAAAAGACTGATA 59.180 43.478 0.00 0.00 37.80 2.15
569 571 5.039333 GCAACCAAAAGACTGATATGATGC 58.961 41.667 0.00 0.00 0.00 3.91
597 599 7.766278 AGACATCTTGACTTTGATACCATGTAC 59.234 37.037 0.00 0.00 0.00 2.90
619 621 1.134907 AGTGCATGCTTTAGCCAATGC 60.135 47.619 20.33 16.01 45.25 3.56
622 624 2.557317 GCATGCTTTAGCCAATGCAAT 58.443 42.857 11.37 0.00 44.74 3.56
651 653 7.602517 AAACCGATCTGATGAAAAAGACTAG 57.397 36.000 0.00 0.00 0.00 2.57
652 654 6.531503 ACCGATCTGATGAAAAAGACTAGA 57.468 37.500 0.00 0.00 0.00 2.43
653 655 6.334202 ACCGATCTGATGAAAAAGACTAGAC 58.666 40.000 0.00 0.00 0.00 2.59
654 656 6.071334 ACCGATCTGATGAAAAAGACTAGACA 60.071 38.462 0.00 0.00 0.00 3.41
655 657 6.813649 CCGATCTGATGAAAAAGACTAGACAA 59.186 38.462 0.00 0.00 0.00 3.18
656 658 7.493971 CCGATCTGATGAAAAAGACTAGACAAT 59.506 37.037 0.00 0.00 0.00 2.71
657 659 9.521503 CGATCTGATGAAAAAGACTAGACAATA 57.478 33.333 0.00 0.00 0.00 1.90
683 685 9.394767 ACATTTATATGTCAGCACTATTGAACA 57.605 29.630 0.00 0.00 41.07 3.18
684 686 9.874215 CATTTATATGTCAGCACTATTGAACAG 57.126 33.333 0.00 0.00 0.00 3.16
685 687 5.998454 ATATGTCAGCACTATTGAACAGC 57.002 39.130 0.00 0.00 0.00 4.40
686 688 3.407424 TGTCAGCACTATTGAACAGCT 57.593 42.857 0.00 0.00 35.63 4.24
687 689 4.535526 TGTCAGCACTATTGAACAGCTA 57.464 40.909 0.00 0.00 33.59 3.32
688 690 4.893608 TGTCAGCACTATTGAACAGCTAA 58.106 39.130 0.00 0.00 33.59 3.09
689 691 4.690748 TGTCAGCACTATTGAACAGCTAAC 59.309 41.667 0.00 0.00 33.59 2.34
690 692 4.690748 GTCAGCACTATTGAACAGCTAACA 59.309 41.667 0.00 0.00 33.59 2.41
691 693 5.352569 GTCAGCACTATTGAACAGCTAACAT 59.647 40.000 0.00 0.00 33.59 2.71
692 694 5.582269 TCAGCACTATTGAACAGCTAACATC 59.418 40.000 0.00 0.00 33.59 3.06
693 695 4.878397 AGCACTATTGAACAGCTAACATCC 59.122 41.667 0.00 0.00 33.06 3.51
694 696 4.635765 GCACTATTGAACAGCTAACATCCA 59.364 41.667 0.00 0.00 0.00 3.41
695 697 5.123820 GCACTATTGAACAGCTAACATCCAA 59.876 40.000 0.00 0.00 0.00 3.53
696 698 6.183360 GCACTATTGAACAGCTAACATCCAAT 60.183 38.462 0.00 0.00 0.00 3.16
697 699 7.629222 GCACTATTGAACAGCTAACATCCAATT 60.629 37.037 0.00 0.00 0.00 2.32
698 700 8.246180 CACTATTGAACAGCTAACATCCAATTT 58.754 33.333 0.00 0.00 0.00 1.82
699 701 8.806146 ACTATTGAACAGCTAACATCCAATTTT 58.194 29.630 0.00 0.00 0.00 1.82
702 704 9.995003 ATTGAACAGCTAACATCCAATTTTAAA 57.005 25.926 0.00 0.00 0.00 1.52
703 705 9.995003 TTGAACAGCTAACATCCAATTTTAAAT 57.005 25.926 0.00 0.00 0.00 1.40
704 706 9.995003 TGAACAGCTAACATCCAATTTTAAATT 57.005 25.926 0.00 0.00 0.00 1.82
707 709 9.860898 ACAGCTAACATCCAATTTTAAATTCTC 57.139 29.630 0.00 0.00 0.00 2.87
708 710 9.859427 CAGCTAACATCCAATTTTAAATTCTCA 57.141 29.630 0.00 0.00 0.00 3.27
717 719 8.825745 TCCAATTTTAAATTCTCAAGTTGTTGC 58.174 29.630 2.11 0.00 33.23 4.17
718 720 8.829612 CCAATTTTAAATTCTCAAGTTGTTGCT 58.170 29.630 2.11 0.00 33.23 3.91
719 721 9.853921 CAATTTTAAATTCTCAAGTTGTTGCTC 57.146 29.630 2.11 0.00 33.23 4.26
720 722 9.598517 AATTTTAAATTCTCAAGTTGTTGCTCA 57.401 25.926 2.11 0.00 33.23 4.26
721 723 8.633075 TTTTAAATTCTCAAGTTGTTGCTCAG 57.367 30.769 2.11 0.00 33.23 3.35
722 724 7.566760 TTAAATTCTCAAGTTGTTGCTCAGA 57.433 32.000 2.11 0.00 33.23 3.27
723 725 6.455360 AAATTCTCAAGTTGTTGCTCAGAA 57.545 33.333 2.11 3.99 33.23 3.02
724 726 5.686159 ATTCTCAAGTTGTTGCTCAGAAG 57.314 39.130 2.11 0.00 33.23 2.85
740 742 5.219343 TCAGAAGTCAGAATTGAAGCTGA 57.781 39.130 0.00 0.00 38.72 4.26
742 744 6.057533 TCAGAAGTCAGAATTGAAGCTGAAA 58.942 36.000 2.67 0.00 42.27 2.69
744 746 5.240403 AGAAGTCAGAATTGAAGCTGAAACC 59.760 40.000 2.67 0.00 42.27 3.27
748 750 4.036734 TCAGAATTGAAGCTGAAACCACAC 59.963 41.667 0.00 0.00 38.14 3.82
768 770 2.544480 GGTGTTGCCGAGAAAATAGC 57.456 50.000 0.00 0.00 0.00 2.97
771 773 3.487544 GGTGTTGCCGAGAAAATAGCATC 60.488 47.826 0.00 0.00 34.72 3.91
787 789 6.790285 ATAGCATCTTTGGTTTTGCAAAAG 57.210 33.333 24.46 12.72 39.05 2.27
790 792 4.571984 GCATCTTTGGTTTTGCAAAAGAGT 59.428 37.500 24.46 6.03 46.83 3.24
792 794 6.074142 GCATCTTTGGTTTTGCAAAAGAGTAG 60.074 38.462 24.46 17.93 46.83 2.57
793 795 6.524101 TCTTTGGTTTTGCAAAAGAGTAGT 57.476 33.333 24.46 0.00 41.04 2.73
795 797 8.232913 TCTTTGGTTTTGCAAAAGAGTAGTAT 57.767 30.769 24.46 0.00 41.04 2.12
796 798 9.344772 TCTTTGGTTTTGCAAAAGAGTAGTATA 57.655 29.630 24.46 3.20 41.04 1.47
797 799 9.959749 CTTTGGTTTTGCAAAAGAGTAGTATAA 57.040 29.630 24.46 8.18 39.88 0.98
843 845 4.078537 TCACGATGGGATTTTGAACATGT 58.921 39.130 0.00 0.00 0.00 3.21
973 982 2.747460 GCATCCAGCAACTCGGCA 60.747 61.111 0.00 0.00 44.79 5.69
993 1008 3.496130 GCATTATCACCACATCTTCTCGG 59.504 47.826 0.00 0.00 0.00 4.63
995 1010 2.969628 ATCACCACATCTTCTCGGTC 57.030 50.000 0.00 0.00 0.00 4.79
1050 1089 2.820787 ACTCGTCACCTTACTCTTCCTG 59.179 50.000 0.00 0.00 0.00 3.86
1561 1603 0.381089 CGCCTACGTCTTCCACTAGG 59.619 60.000 0.00 0.00 32.78 3.02
1563 1605 3.518823 CGCCTACGTCTTCCACTAGGAA 61.519 54.545 0.00 0.00 42.36 3.36
1564 1606 4.979258 CGCCTACGTCTTCCACTAGGAAA 61.979 52.174 0.00 0.00 43.24 3.13
1565 1607 6.230313 CGCCTACGTCTTCCACTAGGAAAT 62.230 50.000 0.00 0.00 43.24 2.17
1566 1608 6.943006 CGCCTACGTCTTCCACTAGGAAATA 61.943 48.000 0.00 0.00 43.24 1.40
1567 1609 8.857886 CGCCTACGTCTTCCACTAGGAAATAC 62.858 50.000 0.00 0.00 43.24 1.89
1577 1619 6.893583 TCCACTAGGAAATACGTACTCTACT 58.106 40.000 0.00 0.00 42.23 2.57
1578 1620 6.765036 TCCACTAGGAAATACGTACTCTACTG 59.235 42.308 0.00 0.00 42.23 2.74
1579 1621 6.017275 CCACTAGGAAATACGTACTCTACTGG 60.017 46.154 0.00 0.00 36.89 4.00
1580 1622 6.017275 CACTAGGAAATACGTACTCTACTGGG 60.017 46.154 0.00 0.00 0.00 4.45
1581 1623 5.121380 AGGAAATACGTACTCTACTGGGA 57.879 43.478 0.00 0.00 0.00 4.37
1582 1624 4.886489 AGGAAATACGTACTCTACTGGGAC 59.114 45.833 0.00 0.00 0.00 4.46
1583 1625 4.260948 GGAAATACGTACTCTACTGGGACG 60.261 50.000 0.00 0.00 39.37 4.79
1584 1626 1.656652 TACGTACTCTACTGGGACGC 58.343 55.000 0.00 0.00 37.02 5.19
1585 1627 1.351012 CGTACTCTACTGGGACGCG 59.649 63.158 3.53 3.53 0.00 6.01
1586 1628 1.726265 GTACTCTACTGGGACGCGG 59.274 63.158 12.47 0.00 0.00 6.46
1587 1629 0.745845 GTACTCTACTGGGACGCGGA 60.746 60.000 12.47 0.00 0.00 5.54
1588 1630 0.463295 TACTCTACTGGGACGCGGAG 60.463 60.000 12.47 7.15 0.00 4.63
1589 1631 1.749638 CTCTACTGGGACGCGGAGT 60.750 63.158 12.47 9.28 0.00 3.85
1590 1632 1.303888 TCTACTGGGACGCGGAGTT 60.304 57.895 12.47 0.00 0.00 3.01
1591 1633 0.896940 TCTACTGGGACGCGGAGTTT 60.897 55.000 12.47 0.00 0.00 2.66
1592 1634 0.458025 CTACTGGGACGCGGAGTTTC 60.458 60.000 12.47 0.00 0.00 2.78
1593 1635 0.896940 TACTGGGACGCGGAGTTTCT 60.897 55.000 12.47 0.00 0.00 2.52
1594 1636 1.738099 CTGGGACGCGGAGTTTCTG 60.738 63.158 12.47 0.00 0.00 3.02
1595 1637 3.119096 GGGACGCGGAGTTTCTGC 61.119 66.667 12.47 0.00 45.04 4.26
1596 1638 2.048127 GGACGCGGAGTTTCTGCT 60.048 61.111 12.47 0.00 46.27 4.24
1597 1639 2.095252 GGACGCGGAGTTTCTGCTC 61.095 63.158 12.47 0.00 46.27 4.26
1598 1640 2.048127 ACGCGGAGTTTCTGCTCC 60.048 61.111 12.47 2.23 46.27 4.70
1604 1646 3.917072 GAGTTTCTGCTCCCGAACT 57.083 52.632 0.00 0.00 0.00 3.01
1605 1647 1.715993 GAGTTTCTGCTCCCGAACTC 58.284 55.000 0.00 0.00 0.00 3.01
1606 1648 1.000955 GAGTTTCTGCTCCCGAACTCA 59.999 52.381 9.49 0.00 0.00 3.41
1607 1649 1.625818 AGTTTCTGCTCCCGAACTCAT 59.374 47.619 0.00 0.00 0.00 2.90
1608 1650 2.003301 GTTTCTGCTCCCGAACTCATC 58.997 52.381 0.00 0.00 0.00 2.92
1609 1651 1.561643 TTCTGCTCCCGAACTCATCT 58.438 50.000 0.00 0.00 0.00 2.90
1610 1652 0.820226 TCTGCTCCCGAACTCATCTG 59.180 55.000 0.00 0.00 0.00 2.90
1611 1653 0.809241 CTGCTCCCGAACTCATCTGC 60.809 60.000 0.00 0.00 0.00 4.26
1612 1654 1.219124 GCTCCCGAACTCATCTGCA 59.781 57.895 0.00 0.00 0.00 4.41
1613 1655 1.086634 GCTCCCGAACTCATCTGCAC 61.087 60.000 0.00 0.00 0.00 4.57
1614 1656 0.460987 CTCCCGAACTCATCTGCACC 60.461 60.000 0.00 0.00 0.00 5.01
1615 1657 1.450312 CCCGAACTCATCTGCACCC 60.450 63.158 0.00 0.00 0.00 4.61
1616 1658 1.296392 CCGAACTCATCTGCACCCA 59.704 57.895 0.00 0.00 0.00 4.51
1617 1659 1.021390 CCGAACTCATCTGCACCCAC 61.021 60.000 0.00 0.00 0.00 4.61
1618 1660 1.354337 CGAACTCATCTGCACCCACG 61.354 60.000 0.00 0.00 0.00 4.94
1619 1661 0.320771 GAACTCATCTGCACCCACGT 60.321 55.000 0.00 0.00 0.00 4.49
1620 1662 0.108585 AACTCATCTGCACCCACGTT 59.891 50.000 0.00 0.00 0.00 3.99
1621 1663 0.603707 ACTCATCTGCACCCACGTTG 60.604 55.000 0.00 0.00 0.00 4.10
1622 1664 0.320683 CTCATCTGCACCCACGTTGA 60.321 55.000 0.00 0.00 0.00 3.18
1623 1665 0.602638 TCATCTGCACCCACGTTGAC 60.603 55.000 0.00 0.00 0.00 3.18
1624 1666 0.884259 CATCTGCACCCACGTTGACA 60.884 55.000 0.00 0.00 0.00 3.58
1625 1667 0.179032 ATCTGCACCCACGTTGACAA 60.179 50.000 0.00 0.00 0.00 3.18
1626 1668 1.092921 TCTGCACCCACGTTGACAAC 61.093 55.000 8.34 8.34 0.00 3.32
1627 1669 1.372838 CTGCACCCACGTTGACAACA 61.373 55.000 18.09 0.00 0.00 3.33
1628 1670 1.063488 GCACCCACGTTGACAACAC 59.937 57.895 18.09 0.00 0.00 3.32
1629 1671 1.649390 GCACCCACGTTGACAACACA 61.649 55.000 18.09 0.00 0.00 3.72
1630 1672 1.021202 CACCCACGTTGACAACACAT 58.979 50.000 18.09 0.29 0.00 3.21
1631 1673 1.002900 CACCCACGTTGACAACACATC 60.003 52.381 18.09 0.00 0.00 3.06
1632 1674 1.304254 CCCACGTTGACAACACATCA 58.696 50.000 18.09 0.00 0.00 3.07
1633 1675 1.673400 CCCACGTTGACAACACATCAA 59.327 47.619 18.09 0.00 33.68 2.57
1634 1676 2.098280 CCCACGTTGACAACACATCAAA 59.902 45.455 18.09 0.00 37.80 2.69
1635 1677 3.243367 CCCACGTTGACAACACATCAAAT 60.243 43.478 18.09 0.00 37.80 2.32
1636 1678 4.358851 CCACGTTGACAACACATCAAATT 58.641 39.130 18.09 0.00 37.80 1.82
1637 1679 5.506483 CCCACGTTGACAACACATCAAATTA 60.506 40.000 18.09 0.00 37.80 1.40
1638 1680 6.148948 CCACGTTGACAACACATCAAATTAT 58.851 36.000 18.09 0.00 37.80 1.28
1639 1681 6.305399 CCACGTTGACAACACATCAAATTATC 59.695 38.462 18.09 0.00 37.80 1.75
1640 1682 7.077605 CACGTTGACAACACATCAAATTATCT 58.922 34.615 18.09 0.00 37.80 1.98
1641 1683 8.227119 CACGTTGACAACACATCAAATTATCTA 58.773 33.333 18.09 0.00 37.80 1.98
1642 1684 8.946085 ACGTTGACAACACATCAAATTATCTAT 58.054 29.630 18.09 0.00 37.80 1.98
1643 1685 9.425893 CGTTGACAACACATCAAATTATCTATC 57.574 33.333 18.09 0.00 37.80 2.08
1646 1688 9.447157 TGACAACACATCAAATTATCTATCACA 57.553 29.630 0.00 0.00 0.00 3.58
1647 1689 9.708222 GACAACACATCAAATTATCTATCACAC 57.292 33.333 0.00 0.00 0.00 3.82
1648 1690 9.230122 ACAACACATCAAATTATCTATCACACA 57.770 29.630 0.00 0.00 0.00 3.72
1712 1754 3.644966 TTTTTCGGACCAGGAGCATAT 57.355 42.857 0.00 0.00 0.00 1.78
1713 1755 2.910688 TTTCGGACCAGGAGCATATC 57.089 50.000 0.00 0.00 0.00 1.63
1714 1756 1.788229 TTCGGACCAGGAGCATATCA 58.212 50.000 0.00 0.00 0.00 2.15
1715 1757 1.332195 TCGGACCAGGAGCATATCAG 58.668 55.000 0.00 0.00 0.00 2.90
1716 1758 0.320247 CGGACCAGGAGCATATCAGC 60.320 60.000 0.00 0.00 0.00 4.26
1717 1759 0.036022 GGACCAGGAGCATATCAGCC 59.964 60.000 0.00 0.00 34.23 4.85
1718 1760 1.055040 GACCAGGAGCATATCAGCCT 58.945 55.000 0.00 0.00 34.23 4.58
1719 1761 0.763652 ACCAGGAGCATATCAGCCTG 59.236 55.000 0.00 0.00 45.81 4.85
1720 1762 3.627645 CAGGAGCATATCAGCCTGG 57.372 57.895 0.00 0.00 43.22 4.45
1721 1763 0.036448 CAGGAGCATATCAGCCTGGG 59.964 60.000 0.00 0.00 43.22 4.45
1722 1764 1.303155 GGAGCATATCAGCCTGGGC 60.303 63.158 3.00 3.00 42.33 5.36
1723 1765 1.453235 GAGCATATCAGCCTGGGCA 59.547 57.895 14.39 0.00 44.88 5.36
1724 1766 0.888285 GAGCATATCAGCCTGGGCAC 60.888 60.000 14.39 0.00 44.88 5.01
1725 1767 2.349100 AGCATATCAGCCTGGGCACC 62.349 60.000 14.39 0.00 44.88 5.01
1738 1780 0.526211 GGGCACCGAGTTGAATTTCC 59.474 55.000 0.00 0.00 40.86 3.13
1739 1781 0.168128 GGCACCGAGTTGAATTTCCG 59.832 55.000 0.00 0.00 0.00 4.30
1740 1782 0.872388 GCACCGAGTTGAATTTCCGT 59.128 50.000 0.00 0.00 0.00 4.69
1741 1783 2.070783 GCACCGAGTTGAATTTCCGTA 58.929 47.619 0.00 0.00 0.00 4.02
1742 1784 2.159747 GCACCGAGTTGAATTTCCGTAC 60.160 50.000 0.00 0.00 0.00 3.67
1743 1785 3.323243 CACCGAGTTGAATTTCCGTACT 58.677 45.455 0.00 0.00 0.00 2.73
1744 1786 3.367025 CACCGAGTTGAATTTCCGTACTC 59.633 47.826 10.83 10.83 33.58 2.59
1745 1787 3.257624 ACCGAGTTGAATTTCCGTACTCT 59.742 43.478 15.45 2.84 34.51 3.24
1746 1788 4.460382 ACCGAGTTGAATTTCCGTACTCTA 59.540 41.667 15.45 0.00 34.51 2.43
1747 1789 4.797349 CCGAGTTGAATTTCCGTACTCTAC 59.203 45.833 15.45 0.00 34.51 2.59
1748 1790 5.392811 CCGAGTTGAATTTCCGTACTCTACT 60.393 44.000 15.45 0.00 34.51 2.57
1763 1805 7.222224 CCGTACTCTACTACCTTAATTTGCTTG 59.778 40.741 0.00 0.00 0.00 4.01
1771 1814 4.956085 ACCTTAATTTGCTTGGTGGTTTC 58.044 39.130 0.00 0.00 0.00 2.78
1781 1824 2.816204 TGGTGGTTTCGATTCGTACA 57.184 45.000 5.89 0.00 0.00 2.90
1793 1839 4.743151 TCGATTCGTACATGTTATTCTGGC 59.257 41.667 2.30 0.00 0.00 4.85
1828 1876 7.971183 AAGTCTACATGTTTTCTCTTTCCTC 57.029 36.000 2.30 0.00 0.00 3.71
1829 1877 7.067496 AGTCTACATGTTTTCTCTTTCCTCA 57.933 36.000 2.30 0.00 0.00 3.86
1830 1878 7.158021 AGTCTACATGTTTTCTCTTTCCTCAG 58.842 38.462 2.30 0.00 0.00 3.35
1831 1879 5.934625 TCTACATGTTTTCTCTTTCCTCAGC 59.065 40.000 2.30 0.00 0.00 4.26
1832 1880 4.464008 ACATGTTTTCTCTTTCCTCAGCA 58.536 39.130 0.00 0.00 0.00 4.41
1833 1881 4.276926 ACATGTTTTCTCTTTCCTCAGCAC 59.723 41.667 0.00 0.00 0.00 4.40
1835 1883 4.269183 TGTTTTCTCTTTCCTCAGCACAA 58.731 39.130 0.00 0.00 0.00 3.33
1836 1884 4.704540 TGTTTTCTCTTTCCTCAGCACAAA 59.295 37.500 0.00 0.00 0.00 2.83
1837 1885 5.360714 TGTTTTCTCTTTCCTCAGCACAAAT 59.639 36.000 0.00 0.00 0.00 2.32
1838 1886 5.443185 TTTCTCTTTCCTCAGCACAAATG 57.557 39.130 0.00 0.00 0.00 2.32
1937 1993 7.347252 TGTATATTACACCTGAGTCTCACTCT 58.653 38.462 0.00 0.00 38.71 3.24
1939 1995 1.917872 ACACCTGAGTCTCACTCTCC 58.082 55.000 0.00 0.00 45.27 3.71
1940 1996 1.427368 ACACCTGAGTCTCACTCTCCT 59.573 52.381 0.00 0.00 45.27 3.69
1957 2022 5.019657 TCTCCTAAGTTGGGTTCCTCTTA 57.980 43.478 5.03 0.00 0.00 2.10
1959 2024 3.518303 TCCTAAGTTGGGTTCCTCTTAGC 59.482 47.826 5.03 0.00 37.39 3.09
2017 2082 7.643764 CCTGTGTACATACAACAAAAGAACAAG 59.356 37.037 0.00 0.00 38.04 3.16
2039 2104 1.474478 GATCAGAAGGTGAGCTCGTCA 59.526 52.381 9.64 0.00 38.64 4.35
2063 2128 3.756727 GCCTTGGCCAGCTTCTGC 61.757 66.667 5.11 0.00 40.05 4.26
2372 2437 5.314529 ACTTTCTTTAGTAAGTTCCAGGCC 58.685 41.667 0.00 0.00 32.82 5.19
2403 2468 1.202927 TGAAGCCCCTGAGAAAAGTGG 60.203 52.381 0.00 0.00 0.00 4.00
2416 2481 7.174946 CCTGAGAAAAGTGGCATCTTAGTTTTA 59.825 37.037 6.81 0.00 31.54 1.52
2439 2504 6.051179 AGTCTTGGAAGTGGGAAAGTATAC 57.949 41.667 0.00 0.00 0.00 1.47
2474 2559 5.574443 GCAGATGTGACAAAGCTAAAATTCC 59.426 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.238439 CACCTGGCACAAAATCTCGT 58.762 50.000 0.00 0.00 38.70 4.18
16 17 1.421268 AGATCTGAAACACCTGGCACA 59.579 47.619 0.00 0.00 0.00 4.57
20 21 3.877559 TGCATAGATCTGAAACACCTGG 58.122 45.455 5.18 0.00 0.00 4.45
24 25 4.265073 ACCCTTGCATAGATCTGAAACAC 58.735 43.478 5.18 0.00 0.00 3.32
27 28 5.178096 TGAACCCTTGCATAGATCTGAAA 57.822 39.130 5.18 0.00 0.00 2.69
51 52 3.270027 CCTGAAGGCACATTCGTAATCA 58.730 45.455 0.00 0.00 31.52 2.57
53 54 3.270877 GACCTGAAGGCACATTCGTAAT 58.729 45.455 0.00 0.00 39.32 1.89
55 56 1.403647 CGACCTGAAGGCACATTCGTA 60.404 52.381 0.00 0.00 39.32 3.43
57 58 0.389817 TCGACCTGAAGGCACATTCG 60.390 55.000 0.00 0.00 39.32 3.34
60 61 0.107508 CCATCGACCTGAAGGCACAT 60.108 55.000 0.00 0.00 39.32 3.21
64 65 1.153349 GGACCATCGACCTGAAGGC 60.153 63.158 0.00 0.00 39.11 4.35
65 66 0.905357 AAGGACCATCGACCTGAAGG 59.095 55.000 0.00 0.00 41.35 3.46
87 88 0.675633 AAGTCTTTGTGCACATGCCC 59.324 50.000 22.39 9.54 41.18 5.36
112 113 2.480419 GGTTTGACCTTGTCGATGACAG 59.520 50.000 0.00 0.00 43.69 3.51
114 115 1.459592 CGGTTTGACCTTGTCGATGAC 59.540 52.381 0.00 0.00 35.66 3.06
131 132 0.322277 TCGCTCTTACTGGAGTCGGT 60.322 55.000 0.00 0.00 35.39 4.69
140 141 3.899836 CGATGTCGTCGCTCTTACT 57.100 52.632 0.67 0.00 44.33 2.24
162 163 3.777925 CAGAACAAGCCGCCGACG 61.778 66.667 0.00 0.00 39.67 5.12
168 169 0.597637 ACAGTCGTCAGAACAAGCCG 60.598 55.000 0.00 0.00 0.00 5.52
182 183 2.607187 CACCGAATGACCACTACAGTC 58.393 52.381 0.00 0.00 34.72 3.51
183 184 1.275291 CCACCGAATGACCACTACAGT 59.725 52.381 0.00 0.00 0.00 3.55
186 187 1.405121 GGACCACCGAATGACCACTAC 60.405 57.143 0.00 0.00 0.00 2.73
191 192 1.078426 CTGGGACCACCGAATGACC 60.078 63.158 0.00 0.00 44.64 4.02
225 226 9.060347 AGTACATGGCATCTCAAACATAATAAG 57.940 33.333 0.00 0.00 0.00 1.73
277 279 4.408596 TCACCTTTTCTTGGCCAAAAAGAT 59.591 37.500 31.22 19.85 42.44 2.40
288 290 5.544650 AGCCATCAAATTCACCTTTTCTTG 58.455 37.500 0.00 0.00 0.00 3.02
294 296 4.347583 TCCAAAAGCCATCAAATTCACCTT 59.652 37.500 0.00 0.00 0.00 3.50
296 298 4.248058 CTCCAAAAGCCATCAAATTCACC 58.752 43.478 0.00 0.00 0.00 4.02
330 332 0.798776 GCAATCCTTCGTGACACCAG 59.201 55.000 0.00 0.00 0.00 4.00
354 356 6.925610 AAAACAAAAGAAAAATGGGAGCTC 57.074 33.333 4.71 4.71 0.00 4.09
378 380 4.155063 TGGCTAGAGCATGCATTTCTAA 57.845 40.909 21.98 1.09 44.36 2.10
379 381 3.843893 TGGCTAGAGCATGCATTTCTA 57.156 42.857 21.98 16.60 44.36 2.10
380 382 2.723322 TGGCTAGAGCATGCATTTCT 57.277 45.000 21.98 16.34 44.36 2.52
381 383 3.639538 CATTGGCTAGAGCATGCATTTC 58.360 45.455 21.98 9.02 44.36 2.17
382 384 2.223971 GCATTGGCTAGAGCATGCATTT 60.224 45.455 21.98 7.16 44.74 2.32
383 385 1.340248 GCATTGGCTAGAGCATGCATT 59.660 47.619 21.98 9.90 44.74 3.56
384 386 0.959553 GCATTGGCTAGAGCATGCAT 59.040 50.000 21.98 10.70 44.74 3.96
385 387 1.441732 CGCATTGGCTAGAGCATGCA 61.442 55.000 21.98 0.00 45.27 3.96
386 388 1.162181 TCGCATTGGCTAGAGCATGC 61.162 55.000 10.51 10.51 43.08 4.06
387 389 1.463831 GATCGCATTGGCTAGAGCATG 59.536 52.381 3.54 0.90 44.36 4.06
388 390 1.071228 TGATCGCATTGGCTAGAGCAT 59.929 47.619 3.54 0.00 44.36 3.79
389 391 0.465287 TGATCGCATTGGCTAGAGCA 59.535 50.000 3.54 0.00 44.36 4.26
390 392 1.586422 TTGATCGCATTGGCTAGAGC 58.414 50.000 0.00 0.00 38.10 4.09
391 393 4.825546 ATTTTGATCGCATTGGCTAGAG 57.174 40.909 0.00 0.00 38.10 2.43
392 394 5.237127 CAGTATTTTGATCGCATTGGCTAGA 59.763 40.000 0.00 0.00 38.10 2.43
393 395 5.237127 TCAGTATTTTGATCGCATTGGCTAG 59.763 40.000 0.00 0.00 38.10 3.42
394 396 5.122519 TCAGTATTTTGATCGCATTGGCTA 58.877 37.500 0.00 0.00 38.10 3.93
395 397 3.947196 TCAGTATTTTGATCGCATTGGCT 59.053 39.130 0.00 0.00 38.10 4.75
396 398 4.291540 TCAGTATTTTGATCGCATTGGC 57.708 40.909 0.00 0.00 0.00 4.52
405 407 8.986991 AGTCTTCTACCAGATCAGTATTTTGAT 58.013 33.333 0.00 0.00 40.40 2.57
406 408 8.367660 AGTCTTCTACCAGATCAGTATTTTGA 57.632 34.615 0.00 0.00 0.00 2.69
407 409 9.442047 AAAGTCTTCTACCAGATCAGTATTTTG 57.558 33.333 0.00 0.00 0.00 2.44
410 412 9.442047 CAAAAAGTCTTCTACCAGATCAGTATT 57.558 33.333 0.00 0.00 0.00 1.89
411 413 8.043710 CCAAAAAGTCTTCTACCAGATCAGTAT 58.956 37.037 0.00 0.00 0.00 2.12
412 414 7.386851 CCAAAAAGTCTTCTACCAGATCAGTA 58.613 38.462 0.00 0.00 0.00 2.74
413 415 6.234177 CCAAAAAGTCTTCTACCAGATCAGT 58.766 40.000 0.00 0.00 0.00 3.41
414 416 5.123027 GCCAAAAAGTCTTCTACCAGATCAG 59.877 44.000 0.00 0.00 0.00 2.90
415 417 5.003804 GCCAAAAAGTCTTCTACCAGATCA 58.996 41.667 0.00 0.00 0.00 2.92
416 418 5.249420 AGCCAAAAAGTCTTCTACCAGATC 58.751 41.667 0.00 0.00 0.00 2.75
417 419 5.248380 AGCCAAAAAGTCTTCTACCAGAT 57.752 39.130 0.00 0.00 0.00 2.90
418 420 4.706842 AGCCAAAAAGTCTTCTACCAGA 57.293 40.909 0.00 0.00 0.00 3.86
419 421 4.083802 CGAAGCCAAAAAGTCTTCTACCAG 60.084 45.833 0.00 0.00 35.35 4.00
420 422 3.813166 CGAAGCCAAAAAGTCTTCTACCA 59.187 43.478 0.00 0.00 35.35 3.25
421 423 4.062991 TCGAAGCCAAAAAGTCTTCTACC 58.937 43.478 0.00 0.00 35.35 3.18
422 424 5.864628 ATCGAAGCCAAAAAGTCTTCTAC 57.135 39.130 0.00 0.00 35.35 2.59
423 425 5.873164 GGTATCGAAGCCAAAAAGTCTTCTA 59.127 40.000 0.00 0.00 35.35 2.10
424 426 4.695928 GGTATCGAAGCCAAAAAGTCTTCT 59.304 41.667 0.00 0.00 35.35 2.85
425 427 4.454504 TGGTATCGAAGCCAAAAAGTCTTC 59.545 41.667 8.61 0.00 34.45 2.87
426 428 4.394729 TGGTATCGAAGCCAAAAAGTCTT 58.605 39.130 8.61 0.00 0.00 3.01
427 429 4.015872 TGGTATCGAAGCCAAAAAGTCT 57.984 40.909 8.61 0.00 0.00 3.24
428 430 4.156008 ACATGGTATCGAAGCCAAAAAGTC 59.844 41.667 14.04 0.00 38.38 3.01
429 431 4.079253 ACATGGTATCGAAGCCAAAAAGT 58.921 39.130 14.04 8.67 38.38 2.66
430 432 4.701956 ACATGGTATCGAAGCCAAAAAG 57.298 40.909 14.04 8.18 38.38 2.27
431 433 5.492895 TCTACATGGTATCGAAGCCAAAAA 58.507 37.500 14.04 3.65 38.38 1.94
432 434 5.092554 TCTACATGGTATCGAAGCCAAAA 57.907 39.130 14.04 3.94 38.38 2.44
433 435 4.746535 TCTACATGGTATCGAAGCCAAA 57.253 40.909 14.04 4.22 38.38 3.28
434 436 4.161565 ACTTCTACATGGTATCGAAGCCAA 59.838 41.667 14.04 0.00 38.38 4.52
435 437 3.704566 ACTTCTACATGGTATCGAAGCCA 59.295 43.478 12.72 12.72 39.33 4.75
436 438 4.051922 CACTTCTACATGGTATCGAAGCC 58.948 47.826 0.00 0.00 35.66 4.35
437 439 3.491267 GCACTTCTACATGGTATCGAAGC 59.509 47.826 0.00 0.00 35.66 3.86
438 440 4.682787 TGCACTTCTACATGGTATCGAAG 58.317 43.478 0.00 4.19 37.64 3.79
439 441 4.729227 TGCACTTCTACATGGTATCGAA 57.271 40.909 0.00 0.00 0.00 3.71
440 442 4.620982 CATGCACTTCTACATGGTATCGA 58.379 43.478 0.00 0.00 39.98 3.59
441 443 3.185188 GCATGCACTTCTACATGGTATCG 59.815 47.826 14.21 0.00 43.13 2.92
442 444 4.739046 GCATGCACTTCTACATGGTATC 57.261 45.455 14.21 0.00 43.13 2.24
445 447 2.795231 AGCATGCACTTCTACATGGT 57.205 45.000 21.98 2.10 46.94 3.55
446 448 2.915349 AGAGCATGCACTTCTACATGG 58.085 47.619 21.98 0.00 43.13 3.66
447 449 3.493877 GCTAGAGCATGCACTTCTACATG 59.506 47.826 22.83 8.90 45.19 3.21
448 450 3.494048 GGCTAGAGCATGCACTTCTACAT 60.494 47.826 22.83 0.00 44.36 2.29
449 451 2.159043 GGCTAGAGCATGCACTTCTACA 60.159 50.000 22.83 3.70 44.36 2.74
450 452 2.159043 TGGCTAGAGCATGCACTTCTAC 60.159 50.000 22.83 12.67 44.36 2.59
451 453 2.110578 TGGCTAGAGCATGCACTTCTA 58.889 47.619 22.83 17.21 44.36 2.10
464 466 4.159506 GGTATTTTGGTTGCATTGGCTAGA 59.840 41.667 0.00 0.00 41.91 2.43
487 489 3.492309 CCAAGAGGTCTTCCATCAGATCG 60.492 52.174 0.00 0.00 33.11 3.69
517 519 2.795231 AGCATGCACTTCTACATGGT 57.205 45.000 21.98 2.10 46.94 3.55
529 531 0.542805 TGCACTGGATAGAGCATGCA 59.457 50.000 21.98 0.00 43.98 3.96
535 537 4.154918 GTCTTTTGGTTGCACTGGATAGAG 59.845 45.833 0.00 0.00 0.00 2.43
540 542 2.023673 CAGTCTTTTGGTTGCACTGGA 58.976 47.619 0.00 0.00 32.42 3.86
544 546 5.627499 TCATATCAGTCTTTTGGTTGCAC 57.373 39.130 0.00 0.00 0.00 4.57
546 548 5.039333 GCATCATATCAGTCTTTTGGTTGC 58.961 41.667 0.00 0.00 0.00 4.17
581 583 5.312895 TGCACTTGTACATGGTATCAAAGT 58.687 37.500 12.86 0.00 0.00 2.66
585 587 3.627123 GCATGCACTTGTACATGGTATCA 59.373 43.478 14.21 8.97 43.13 2.15
586 588 4.214980 GCATGCACTTGTACATGGTATC 57.785 45.455 14.21 4.55 43.13 2.24
597 599 2.728690 TTGGCTAAAGCATGCACTTG 57.271 45.000 21.98 8.23 44.36 3.16
658 660 9.874215 CTGTTCAATAGTGCTGACATATAAATG 57.126 33.333 0.00 0.00 39.17 2.32
659 661 8.562892 GCTGTTCAATAGTGCTGACATATAAAT 58.437 33.333 0.00 0.00 0.00 1.40
660 662 7.770433 AGCTGTTCAATAGTGCTGACATATAAA 59.230 33.333 0.00 0.00 32.32 1.40
661 663 7.275183 AGCTGTTCAATAGTGCTGACATATAA 58.725 34.615 0.00 0.00 32.32 0.98
662 664 6.820335 AGCTGTTCAATAGTGCTGACATATA 58.180 36.000 0.00 0.00 32.32 0.86
663 665 5.678583 AGCTGTTCAATAGTGCTGACATAT 58.321 37.500 0.00 0.00 32.32 1.78
664 666 5.089970 AGCTGTTCAATAGTGCTGACATA 57.910 39.130 0.00 0.00 32.32 2.29
665 667 3.947868 AGCTGTTCAATAGTGCTGACAT 58.052 40.909 0.00 0.00 32.32 3.06
666 668 3.407424 AGCTGTTCAATAGTGCTGACA 57.593 42.857 0.00 0.00 32.32 3.58
667 669 4.690748 TGTTAGCTGTTCAATAGTGCTGAC 59.309 41.667 0.00 0.00 39.59 3.51
668 670 4.893608 TGTTAGCTGTTCAATAGTGCTGA 58.106 39.130 0.00 0.00 35.47 4.26
669 671 5.220739 GGATGTTAGCTGTTCAATAGTGCTG 60.221 44.000 0.00 0.00 35.47 4.41
670 672 4.878397 GGATGTTAGCTGTTCAATAGTGCT 59.122 41.667 0.00 0.00 37.72 4.40
671 673 4.635765 TGGATGTTAGCTGTTCAATAGTGC 59.364 41.667 0.00 0.00 0.00 4.40
672 674 6.741992 TTGGATGTTAGCTGTTCAATAGTG 57.258 37.500 0.00 0.00 0.00 2.74
673 675 7.944729 AATTGGATGTTAGCTGTTCAATAGT 57.055 32.000 0.00 0.00 0.00 2.12
676 678 9.995003 TTTAAAATTGGATGTTAGCTGTTCAAT 57.005 25.926 0.00 0.00 0.00 2.57
677 679 9.995003 ATTTAAAATTGGATGTTAGCTGTTCAA 57.005 25.926 0.00 0.00 0.00 2.69
678 680 9.995003 AATTTAAAATTGGATGTTAGCTGTTCA 57.005 25.926 0.00 0.00 0.00 3.18
681 683 9.860898 GAGAATTTAAAATTGGATGTTAGCTGT 57.139 29.630 0.00 0.00 0.00 4.40
682 684 9.859427 TGAGAATTTAAAATTGGATGTTAGCTG 57.141 29.630 0.00 0.00 0.00 4.24
691 693 8.825745 GCAACAACTTGAGAATTTAAAATTGGA 58.174 29.630 0.00 0.00 0.00 3.53
692 694 8.829612 AGCAACAACTTGAGAATTTAAAATTGG 58.170 29.630 0.00 0.00 0.00 3.16
693 695 9.853921 GAGCAACAACTTGAGAATTTAAAATTG 57.146 29.630 0.00 0.00 0.00 2.32
694 696 9.598517 TGAGCAACAACTTGAGAATTTAAAATT 57.401 25.926 0.00 0.00 0.00 1.82
695 697 9.252962 CTGAGCAACAACTTGAGAATTTAAAAT 57.747 29.630 0.00 0.00 0.00 1.82
696 698 8.465999 TCTGAGCAACAACTTGAGAATTTAAAA 58.534 29.630 0.00 0.00 0.00 1.52
697 699 7.995289 TCTGAGCAACAACTTGAGAATTTAAA 58.005 30.769 0.00 0.00 0.00 1.52
698 700 7.566760 TCTGAGCAACAACTTGAGAATTTAA 57.433 32.000 0.00 0.00 0.00 1.52
699 701 7.283127 ACTTCTGAGCAACAACTTGAGAATTTA 59.717 33.333 0.00 0.00 0.00 1.40
700 702 6.096001 ACTTCTGAGCAACAACTTGAGAATTT 59.904 34.615 0.00 0.00 0.00 1.82
701 703 5.591877 ACTTCTGAGCAACAACTTGAGAATT 59.408 36.000 0.00 0.00 0.00 2.17
702 704 5.128919 ACTTCTGAGCAACAACTTGAGAAT 58.871 37.500 0.00 0.00 0.00 2.40
703 705 4.517285 ACTTCTGAGCAACAACTTGAGAA 58.483 39.130 0.00 0.00 0.00 2.87
704 706 4.122776 GACTTCTGAGCAACAACTTGAGA 58.877 43.478 0.00 0.00 0.00 3.27
705 707 3.873361 TGACTTCTGAGCAACAACTTGAG 59.127 43.478 0.00 0.00 0.00 3.02
706 708 3.872696 TGACTTCTGAGCAACAACTTGA 58.127 40.909 0.00 0.00 0.00 3.02
707 709 3.873361 TCTGACTTCTGAGCAACAACTTG 59.127 43.478 0.00 0.00 0.00 3.16
708 710 4.142609 TCTGACTTCTGAGCAACAACTT 57.857 40.909 0.00 0.00 0.00 2.66
709 711 3.827008 TCTGACTTCTGAGCAACAACT 57.173 42.857 0.00 0.00 0.00 3.16
710 712 5.008019 TCAATTCTGACTTCTGAGCAACAAC 59.992 40.000 0.00 0.00 0.00 3.32
711 713 5.125356 TCAATTCTGACTTCTGAGCAACAA 58.875 37.500 0.00 0.00 0.00 2.83
712 714 4.707105 TCAATTCTGACTTCTGAGCAACA 58.293 39.130 0.00 0.00 0.00 3.33
713 715 5.679734 TTCAATTCTGACTTCTGAGCAAC 57.320 39.130 0.00 0.00 0.00 4.17
714 716 4.214971 GCTTCAATTCTGACTTCTGAGCAA 59.785 41.667 0.00 0.00 31.19 3.91
715 717 3.750130 GCTTCAATTCTGACTTCTGAGCA 59.250 43.478 0.00 0.00 31.19 4.26
716 718 4.002316 AGCTTCAATTCTGACTTCTGAGC 58.998 43.478 0.00 0.00 31.03 4.26
717 719 5.236282 TCAGCTTCAATTCTGACTTCTGAG 58.764 41.667 0.00 0.00 34.69 3.35
718 720 5.219343 TCAGCTTCAATTCTGACTTCTGA 57.781 39.130 0.00 0.00 34.69 3.27
719 721 5.936686 TTCAGCTTCAATTCTGACTTCTG 57.063 39.130 0.00 0.00 38.87 3.02
720 722 5.240403 GGTTTCAGCTTCAATTCTGACTTCT 59.760 40.000 0.00 0.00 38.87 2.85
721 723 5.009010 TGGTTTCAGCTTCAATTCTGACTTC 59.991 40.000 0.00 0.00 38.87 3.01
722 724 4.889409 TGGTTTCAGCTTCAATTCTGACTT 59.111 37.500 0.00 0.00 38.87 3.01
723 725 4.276926 GTGGTTTCAGCTTCAATTCTGACT 59.723 41.667 0.00 0.00 38.87 3.41
724 726 4.036734 TGTGGTTTCAGCTTCAATTCTGAC 59.963 41.667 0.00 0.00 38.87 3.51
753 755 4.142403 CCAAAGATGCTATTTTCTCGGCAA 60.142 41.667 0.00 0.00 38.21 4.52
767 769 4.571984 ACTCTTTTGCAAAACCAAAGATGC 59.428 37.500 20.46 0.00 36.21 3.91
768 770 6.980397 ACTACTCTTTTGCAAAACCAAAGATG 59.020 34.615 20.46 8.64 36.21 2.90
771 773 9.959749 TTATACTACTCTTTTGCAAAACCAAAG 57.040 29.630 20.46 16.39 36.21 2.77
795 797 7.148018 ACGCCAACTACTAGCACTAGTAATTTA 60.148 37.037 16.25 0.00 45.03 1.40
796 798 6.040878 CGCCAACTACTAGCACTAGTAATTT 58.959 40.000 16.25 10.66 45.03 1.82
797 799 5.126707 ACGCCAACTACTAGCACTAGTAATT 59.873 40.000 16.25 11.24 45.03 1.40
799 801 4.012374 ACGCCAACTACTAGCACTAGTAA 58.988 43.478 16.25 3.84 45.03 2.24
800 802 3.614092 ACGCCAACTACTAGCACTAGTA 58.386 45.455 15.05 15.05 43.98 1.82
802 804 2.422479 TGACGCCAACTACTAGCACTAG 59.578 50.000 3.10 3.10 39.04 2.57
803 805 2.163010 GTGACGCCAACTACTAGCACTA 59.837 50.000 0.00 0.00 0.00 2.74
804 806 1.067776 GTGACGCCAACTACTAGCACT 60.068 52.381 0.00 0.00 0.00 4.40
805 807 1.347320 GTGACGCCAACTACTAGCAC 58.653 55.000 0.00 0.00 0.00 4.40
806 808 0.109458 CGTGACGCCAACTACTAGCA 60.109 55.000 0.00 0.00 0.00 3.49
807 809 0.169672 TCGTGACGCCAACTACTAGC 59.830 55.000 0.00 0.00 0.00 3.42
819 821 2.482336 TGTTCAAAATCCCATCGTGACG 59.518 45.455 0.00 0.00 0.00 4.35
843 845 8.570488 GTCGGAAGGAAAATAAAAAGGAAAGTA 58.430 33.333 0.00 0.00 0.00 2.24
895 897 9.277783 GAACAACAGCTTGGATGATTATACTAT 57.722 33.333 0.00 0.00 0.00 2.12
896 898 7.715249 GGAACAACAGCTTGGATGATTATACTA 59.285 37.037 0.00 0.00 0.00 1.82
897 899 6.543831 GGAACAACAGCTTGGATGATTATACT 59.456 38.462 0.00 0.00 0.00 2.12
898 900 6.318648 TGGAACAACAGCTTGGATGATTATAC 59.681 38.462 0.00 0.00 31.92 1.47
899 901 6.422333 TGGAACAACAGCTTGGATGATTATA 58.578 36.000 0.00 0.00 31.92 0.98
900 902 5.263599 TGGAACAACAGCTTGGATGATTAT 58.736 37.500 0.00 0.00 31.92 1.28
901 903 4.661222 TGGAACAACAGCTTGGATGATTA 58.339 39.130 0.00 0.00 31.92 1.75
970 979 3.496130 CGAGAAGATGTGGTGATAATGCC 59.504 47.826 0.00 0.00 0.00 4.40
973 982 4.499865 CGACCGAGAAGATGTGGTGATAAT 60.500 45.833 0.00 0.00 34.12 1.28
1036 1075 1.900545 GCCGCCAGGAAGAGTAAGGT 61.901 60.000 0.00 0.00 41.02 3.50
1338 1380 1.967319 AGTTGAGCAACGTGGTGATT 58.033 45.000 7.62 0.00 45.50 2.57
1344 1386 3.420968 CACGAAGTTGAGCAACGTG 57.579 52.632 6.53 8.17 41.61 4.49
1517 1559 2.182030 CGAGGACGAGCAGGTTCC 59.818 66.667 0.00 0.00 42.66 3.62
1561 1603 4.787882 GCGTCCCAGTAGAGTACGTATTTC 60.788 50.000 0.00 0.00 36.03 2.17
1563 1605 2.615912 GCGTCCCAGTAGAGTACGTATT 59.384 50.000 0.00 0.00 36.03 1.89
1564 1606 2.216898 GCGTCCCAGTAGAGTACGTAT 58.783 52.381 0.00 0.00 36.03 3.06
1565 1607 1.656652 GCGTCCCAGTAGAGTACGTA 58.343 55.000 0.00 0.00 36.03 3.57
1566 1608 1.364626 CGCGTCCCAGTAGAGTACGT 61.365 60.000 0.00 0.00 36.03 3.57
1567 1609 1.351012 CGCGTCCCAGTAGAGTACG 59.649 63.158 0.00 0.00 36.67 3.67
1568 1610 0.745845 TCCGCGTCCCAGTAGAGTAC 60.746 60.000 4.92 0.00 0.00 2.73
1569 1611 0.463295 CTCCGCGTCCCAGTAGAGTA 60.463 60.000 4.92 0.00 0.00 2.59
1570 1612 1.749638 CTCCGCGTCCCAGTAGAGT 60.750 63.158 4.92 0.00 0.00 3.24
1571 1613 1.313812 AACTCCGCGTCCCAGTAGAG 61.314 60.000 4.92 4.15 0.00 2.43
1572 1614 0.896940 AAACTCCGCGTCCCAGTAGA 60.897 55.000 4.92 0.00 0.00 2.59
1573 1615 0.458025 GAAACTCCGCGTCCCAGTAG 60.458 60.000 4.92 0.00 0.00 2.57
1574 1616 0.896940 AGAAACTCCGCGTCCCAGTA 60.897 55.000 4.92 0.00 0.00 2.74
1575 1617 2.207924 AGAAACTCCGCGTCCCAGT 61.208 57.895 4.92 0.00 0.00 4.00
1576 1618 1.738099 CAGAAACTCCGCGTCCCAG 60.738 63.158 4.92 0.00 0.00 4.45
1577 1619 2.342279 CAGAAACTCCGCGTCCCA 59.658 61.111 4.92 0.00 0.00 4.37
1578 1620 3.119096 GCAGAAACTCCGCGTCCC 61.119 66.667 4.92 0.00 0.00 4.46
1579 1621 2.048127 AGCAGAAACTCCGCGTCC 60.048 61.111 4.92 0.00 0.00 4.79
1580 1622 2.095252 GGAGCAGAAACTCCGCGTC 61.095 63.158 4.92 0.00 46.52 5.19
1581 1623 2.048127 GGAGCAGAAACTCCGCGT 60.048 61.111 4.92 0.00 46.52 6.01
1586 1628 1.000955 TGAGTTCGGGAGCAGAAACTC 59.999 52.381 7.06 7.06 35.86 3.01
1587 1629 1.048601 TGAGTTCGGGAGCAGAAACT 58.951 50.000 0.00 0.00 0.00 2.66
1588 1630 2.003301 GATGAGTTCGGGAGCAGAAAC 58.997 52.381 0.00 0.00 0.00 2.78
1589 1631 1.902508 AGATGAGTTCGGGAGCAGAAA 59.097 47.619 0.00 0.00 0.00 2.52
1590 1632 1.205655 CAGATGAGTTCGGGAGCAGAA 59.794 52.381 0.00 0.00 0.00 3.02
1591 1633 0.820226 CAGATGAGTTCGGGAGCAGA 59.180 55.000 0.00 0.00 0.00 4.26
1592 1634 0.809241 GCAGATGAGTTCGGGAGCAG 60.809 60.000 0.00 0.00 0.00 4.24
1593 1635 1.219124 GCAGATGAGTTCGGGAGCA 59.781 57.895 0.00 0.00 0.00 4.26
1594 1636 1.086634 GTGCAGATGAGTTCGGGAGC 61.087 60.000 0.00 0.00 0.00 4.70
1595 1637 0.460987 GGTGCAGATGAGTTCGGGAG 60.461 60.000 0.00 0.00 0.00 4.30
1596 1638 1.596934 GGTGCAGATGAGTTCGGGA 59.403 57.895 0.00 0.00 0.00 5.14
1597 1639 1.450312 GGGTGCAGATGAGTTCGGG 60.450 63.158 0.00 0.00 0.00 5.14
1598 1640 1.021390 GTGGGTGCAGATGAGTTCGG 61.021 60.000 0.00 0.00 0.00 4.30
1599 1641 1.354337 CGTGGGTGCAGATGAGTTCG 61.354 60.000 0.00 0.00 0.00 3.95
1600 1642 0.320771 ACGTGGGTGCAGATGAGTTC 60.321 55.000 0.00 0.00 0.00 3.01
1601 1643 0.108585 AACGTGGGTGCAGATGAGTT 59.891 50.000 0.00 0.00 0.00 3.01
1602 1644 0.603707 CAACGTGGGTGCAGATGAGT 60.604 55.000 0.00 0.00 0.00 3.41
1603 1645 0.320683 TCAACGTGGGTGCAGATGAG 60.321 55.000 0.00 0.00 0.00 2.90
1604 1646 0.602638 GTCAACGTGGGTGCAGATGA 60.603 55.000 0.00 0.00 0.00 2.92
1605 1647 0.884259 TGTCAACGTGGGTGCAGATG 60.884 55.000 0.00 0.00 0.00 2.90
1606 1648 0.179032 TTGTCAACGTGGGTGCAGAT 60.179 50.000 0.00 0.00 0.00 2.90
1607 1649 1.092921 GTTGTCAACGTGGGTGCAGA 61.093 55.000 0.00 0.00 0.00 4.26
1608 1650 1.355210 GTTGTCAACGTGGGTGCAG 59.645 57.895 0.00 0.00 0.00 4.41
1609 1651 1.377333 TGTTGTCAACGTGGGTGCA 60.377 52.632 11.03 0.00 0.00 4.57
1610 1652 1.063488 GTGTTGTCAACGTGGGTGC 59.937 57.895 11.03 0.00 0.00 5.01
1611 1653 1.002900 GATGTGTTGTCAACGTGGGTG 60.003 52.381 11.03 0.00 0.00 4.61
1612 1654 1.305201 GATGTGTTGTCAACGTGGGT 58.695 50.000 11.03 0.00 0.00 4.51
1613 1655 1.304254 TGATGTGTTGTCAACGTGGG 58.696 50.000 11.03 0.00 0.00 4.61
1614 1656 3.412981 TTTGATGTGTTGTCAACGTGG 57.587 42.857 11.03 0.00 35.47 4.94
1615 1657 7.077605 AGATAATTTGATGTGTTGTCAACGTG 58.922 34.615 11.03 0.00 35.47 4.49
1616 1658 7.202016 AGATAATTTGATGTGTTGTCAACGT 57.798 32.000 11.03 0.00 35.47 3.99
1617 1659 9.425893 GATAGATAATTTGATGTGTTGTCAACG 57.574 33.333 11.03 0.00 35.47 4.10
1620 1662 9.447157 TGTGATAGATAATTTGATGTGTTGTCA 57.553 29.630 0.00 0.00 0.00 3.58
1621 1663 9.708222 GTGTGATAGATAATTTGATGTGTTGTC 57.292 33.333 0.00 0.00 0.00 3.18
1622 1664 9.230122 TGTGTGATAGATAATTTGATGTGTTGT 57.770 29.630 0.00 0.00 0.00 3.32
1692 1734 3.054728 TGATATGCTCCTGGTCCGAAAAA 60.055 43.478 0.00 0.00 0.00 1.94
1693 1735 2.503765 TGATATGCTCCTGGTCCGAAAA 59.496 45.455 0.00 0.00 0.00 2.29
1694 1736 2.103094 CTGATATGCTCCTGGTCCGAAA 59.897 50.000 0.00 0.00 0.00 3.46
1695 1737 1.688735 CTGATATGCTCCTGGTCCGAA 59.311 52.381 0.00 0.00 0.00 4.30
1696 1738 1.332195 CTGATATGCTCCTGGTCCGA 58.668 55.000 0.00 0.00 0.00 4.55
1697 1739 0.320247 GCTGATATGCTCCTGGTCCG 60.320 60.000 0.00 0.00 0.00 4.79
1698 1740 0.036022 GGCTGATATGCTCCTGGTCC 59.964 60.000 0.00 0.00 0.00 4.46
1699 1741 1.055040 AGGCTGATATGCTCCTGGTC 58.945 55.000 0.00 0.00 0.00 4.02
1700 1742 0.763652 CAGGCTGATATGCTCCTGGT 59.236 55.000 9.42 0.00 41.71 4.00
1701 1743 3.627645 CAGGCTGATATGCTCCTGG 57.372 57.895 9.42 0.00 41.71 4.45
1702 1744 0.036448 CCCAGGCTGATATGCTCCTG 59.964 60.000 17.94 0.00 44.25 3.86
1703 1745 1.776975 GCCCAGGCTGATATGCTCCT 61.777 60.000 17.94 0.00 38.26 3.69
1704 1746 1.303155 GCCCAGGCTGATATGCTCC 60.303 63.158 17.94 0.00 38.26 4.70
1705 1747 0.888285 GTGCCCAGGCTGATATGCTC 60.888 60.000 17.94 9.88 42.51 4.26
1706 1748 1.150081 GTGCCCAGGCTGATATGCT 59.850 57.895 17.94 0.00 42.51 3.79
1707 1749 1.900498 GGTGCCCAGGCTGATATGC 60.900 63.158 17.94 13.10 42.51 3.14
1708 1750 1.598962 CGGTGCCCAGGCTGATATG 60.599 63.158 17.94 2.45 42.51 1.78
1709 1751 1.762522 CTCGGTGCCCAGGCTGATAT 61.763 60.000 17.94 0.00 42.51 1.63
1710 1752 2.364973 TCGGTGCCCAGGCTGATA 60.365 61.111 17.94 0.00 42.51 2.15
1711 1753 3.790437 CTCGGTGCCCAGGCTGAT 61.790 66.667 17.94 0.00 42.51 2.90
1713 1755 4.335647 AACTCGGTGCCCAGGCTG 62.336 66.667 7.75 7.75 42.51 4.85
1714 1756 4.335647 CAACTCGGTGCCCAGGCT 62.336 66.667 10.58 0.00 42.51 4.58
1715 1757 3.842925 TTCAACTCGGTGCCCAGGC 62.843 63.158 0.38 0.38 42.35 4.85
1716 1758 0.609131 AATTCAACTCGGTGCCCAGG 60.609 55.000 0.00 0.00 0.00 4.45
1717 1759 1.200020 GAAATTCAACTCGGTGCCCAG 59.800 52.381 0.00 0.00 0.00 4.45
1718 1760 1.243902 GAAATTCAACTCGGTGCCCA 58.756 50.000 0.00 0.00 0.00 5.36
1719 1761 0.526211 GGAAATTCAACTCGGTGCCC 59.474 55.000 0.00 0.00 0.00 5.36
1720 1762 0.168128 CGGAAATTCAACTCGGTGCC 59.832 55.000 0.00 0.00 0.00 5.01
1721 1763 0.872388 ACGGAAATTCAACTCGGTGC 59.128 50.000 0.00 0.00 0.00 5.01
1722 1764 3.323243 AGTACGGAAATTCAACTCGGTG 58.677 45.455 0.00 0.00 0.00 4.94
1723 1765 3.257624 AGAGTACGGAAATTCAACTCGGT 59.742 43.478 13.12 0.00 41.12 4.69
1724 1766 3.846360 AGAGTACGGAAATTCAACTCGG 58.154 45.455 13.12 0.00 41.12 4.63
1725 1767 5.638783 AGTAGAGTACGGAAATTCAACTCG 58.361 41.667 13.12 3.25 41.12 4.18
1726 1768 6.971756 GGTAGTAGAGTACGGAAATTCAACTC 59.028 42.308 11.83 11.83 37.44 3.01
1727 1769 6.662663 AGGTAGTAGAGTACGGAAATTCAACT 59.337 38.462 0.00 0.00 0.00 3.16
1728 1770 6.861144 AGGTAGTAGAGTACGGAAATTCAAC 58.139 40.000 0.00 0.00 0.00 3.18
1729 1771 7.472334 AAGGTAGTAGAGTACGGAAATTCAA 57.528 36.000 0.00 0.00 0.00 2.69
1730 1772 8.579850 TTAAGGTAGTAGAGTACGGAAATTCA 57.420 34.615 0.00 0.00 0.00 2.57
1733 1775 9.813446 CAAATTAAGGTAGTAGAGTACGGAAAT 57.187 33.333 0.00 0.00 0.00 2.17
1734 1776 7.761249 GCAAATTAAGGTAGTAGAGTACGGAAA 59.239 37.037 0.00 0.00 0.00 3.13
1735 1777 7.123247 AGCAAATTAAGGTAGTAGAGTACGGAA 59.877 37.037 0.00 0.00 0.00 4.30
1736 1778 6.604795 AGCAAATTAAGGTAGTAGAGTACGGA 59.395 38.462 0.00 0.00 0.00 4.69
1737 1779 6.803642 AGCAAATTAAGGTAGTAGAGTACGG 58.196 40.000 0.00 0.00 0.00 4.02
1738 1780 7.222224 CCAAGCAAATTAAGGTAGTAGAGTACG 59.778 40.741 0.00 0.00 0.00 3.67
1739 1781 8.039538 ACCAAGCAAATTAAGGTAGTAGAGTAC 58.960 37.037 0.00 0.00 0.00 2.73
1740 1782 8.038944 CACCAAGCAAATTAAGGTAGTAGAGTA 58.961 37.037 0.00 0.00 0.00 2.59
1741 1783 6.879458 CACCAAGCAAATTAAGGTAGTAGAGT 59.121 38.462 0.00 0.00 0.00 3.24
1742 1784 6.316390 CCACCAAGCAAATTAAGGTAGTAGAG 59.684 42.308 0.00 0.00 0.00 2.43
1743 1785 6.177610 CCACCAAGCAAATTAAGGTAGTAGA 58.822 40.000 0.00 0.00 0.00 2.59
1744 1786 5.944007 ACCACCAAGCAAATTAAGGTAGTAG 59.056 40.000 0.00 0.00 0.00 2.57
1745 1787 5.883180 ACCACCAAGCAAATTAAGGTAGTA 58.117 37.500 0.00 0.00 0.00 1.82
1746 1788 4.736473 ACCACCAAGCAAATTAAGGTAGT 58.264 39.130 0.00 0.00 0.00 2.73
1747 1789 5.722021 AACCACCAAGCAAATTAAGGTAG 57.278 39.130 0.00 0.00 0.00 3.18
1748 1790 5.278561 CGAAACCACCAAGCAAATTAAGGTA 60.279 40.000 0.00 0.00 0.00 3.08
1763 1805 2.997986 ACATGTACGAATCGAAACCACC 59.002 45.455 10.55 0.00 0.00 4.61
1771 1814 4.745125 AGCCAGAATAACATGTACGAATCG 59.255 41.667 0.00 0.00 0.00 3.34
1806 1854 6.128418 GCTGAGGAAAGAGAAAACATGTAGAC 60.128 42.308 0.00 0.00 0.00 2.59
1819 1867 3.415212 TCCATTTGTGCTGAGGAAAGAG 58.585 45.455 0.00 0.00 0.00 2.85
1820 1868 3.507162 TCCATTTGTGCTGAGGAAAGA 57.493 42.857 0.00 0.00 0.00 2.52
1823 1871 5.549742 AAATTTCCATTTGTGCTGAGGAA 57.450 34.783 0.00 0.00 36.63 3.36
1825 1873 7.745015 CAAATAAATTTCCATTTGTGCTGAGG 58.255 34.615 14.39 0.00 37.36 3.86
1833 1881 9.991388 CAATGCCTACAAATAAATTTCCATTTG 57.009 29.630 18.54 18.54 44.20 2.32
1836 1884 9.768662 GATCAATGCCTACAAATAAATTTCCAT 57.231 29.630 0.00 0.00 0.00 3.41
1837 1885 8.203485 GGATCAATGCCTACAAATAAATTTCCA 58.797 33.333 0.00 0.00 0.00 3.53
1838 1886 7.382218 CGGATCAATGCCTACAAATAAATTTCC 59.618 37.037 0.00 0.00 0.00 3.13
1856 1904 3.492102 ATGTTCGGGATTCGGATCAAT 57.508 42.857 5.94 0.00 39.77 2.57
1861 1909 2.483014 ACAAATGTTCGGGATTCGGA 57.517 45.000 0.00 0.00 39.77 4.55
1911 1967 7.575414 AGTGAGACTCAGGTGTAATATACAG 57.425 40.000 5.10 0.00 39.77 2.74
1912 1968 7.569639 GAGTGAGACTCAGGTGTAATATACA 57.430 40.000 5.10 0.00 44.45 2.29
1937 1993 3.518303 GCTAAGAGGAACCCAACTTAGGA 59.482 47.826 20.22 1.16 39.99 2.94
1939 1995 3.522553 CGCTAAGAGGAACCCAACTTAG 58.477 50.000 17.29 17.29 41.16 2.18
1940 1996 2.354403 GCGCTAAGAGGAACCCAACTTA 60.354 50.000 0.00 0.00 0.00 2.24
1957 2022 3.526931 ACTGTAGTGAATACATGCGCT 57.473 42.857 9.73 0.00 43.44 5.92
1959 2024 5.805486 ACTTGTACTGTAGTGAATACATGCG 59.195 40.000 0.00 0.00 43.44 4.73
2017 2082 1.748493 ACGAGCTCACCTTCTGATCTC 59.252 52.381 15.40 0.00 38.36 2.75
2063 2128 4.168291 GGGAGCCTCAGCCCTTCG 62.168 72.222 0.00 0.00 41.31 3.79
2372 2437 2.174349 GGCTTCACGCTTGCGAAG 59.826 61.111 22.03 15.52 41.31 3.79
2395 2460 8.100508 AGACTAAAACTAAGATGCCACTTTTC 57.899 34.615 0.00 0.00 0.00 2.29
2403 2468 7.361286 CCACTTCCAAGACTAAAACTAAGATGC 60.361 40.741 0.00 0.00 0.00 3.91
2416 2481 5.337330 CGTATACTTTCCCACTTCCAAGACT 60.337 44.000 0.56 0.00 0.00 3.24
2459 2544 8.691661 TCAGAAAGTAGGAATTTTAGCTTTGT 57.308 30.769 0.00 0.00 0.00 2.83
2474 2559 4.808364 GCCTACTTGATGCTCAGAAAGTAG 59.192 45.833 18.27 18.27 46.06 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.