Multiple sequence alignment - TraesCS1A01G264800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G264800 chr1A 100.000 6052 0 0 1 6052 460558686 460552635 0.000000e+00 11177.0
1 TraesCS1A01G264800 chr1B 93.812 2844 129 19 2825 5665 483117022 483114223 0.000000e+00 4233.0
2 TraesCS1A01G264800 chr1B 89.951 2428 135 60 2 2370 483119653 483117276 0.000000e+00 3031.0
3 TraesCS1A01G264800 chr1B 82.653 392 47 12 5661 6048 482944805 482944431 1.630000e-85 327.0
4 TraesCS1A01G264800 chr1B 89.916 238 16 2 2431 2660 483117288 483117051 3.550000e-77 300.0
5 TraesCS1A01G264800 chr1D 93.293 2147 99 20 3932 6052 360884896 360882769 0.000000e+00 3125.0
6 TraesCS1A01G264800 chr1D 89.846 2403 106 57 45 2370 360888907 360886566 0.000000e+00 2959.0
7 TraesCS1A01G264800 chr1D 86.754 1140 121 20 2825 3949 360886313 360885189 0.000000e+00 1242.0
8 TraesCS1A01G264800 chr1D 89.496 238 17 2 2431 2660 360886578 360886341 1.650000e-75 294.0
9 TraesCS1A01G264800 chr1D 83.626 171 24 3 5730 5897 393686364 393686533 2.260000e-34 158.0
10 TraesCS1A01G264800 chr1D 97.333 75 1 1 2363 2437 52574917 52574990 6.370000e-25 126.0
11 TraesCS1A01G264800 chr1D 100.000 66 0 0 2366 2431 351260038 351259973 8.240000e-24 122.0
12 TraesCS1A01G264800 chr7B 88.967 426 31 7 781 1206 630115357 630114948 4.180000e-141 512.0
13 TraesCS1A01G264800 chr7A 89.552 201 21 0 1304 1504 539454109 539454309 7.780000e-64 255.0
14 TraesCS1A01G264800 chr6D 78.816 321 51 14 5736 6049 462523961 462524271 3.700000e-47 200.0
15 TraesCS1A01G264800 chr4D 82.743 226 32 6 5700 5924 350560585 350560366 1.720000e-45 195.0
16 TraesCS1A01G264800 chr4D 88.710 62 2 3 2725 2785 499736614 499736557 3.030000e-08 71.3
17 TraesCS1A01G264800 chr7D 76.638 351 52 23 5720 6052 91703239 91702901 3.750000e-37 167.0
18 TraesCS1A01G264800 chr7D 76.608 342 49 22 5730 6052 613865377 613865706 6.280000e-35 159.0
19 TraesCS1A01G264800 chr3A 81.068 206 32 6 5720 5923 35841131 35840931 2.260000e-34 158.0
20 TraesCS1A01G264800 chr3D 76.842 285 45 17 5700 5978 66409167 66409436 2.270000e-29 141.0
21 TraesCS1A01G264800 chr2A 98.611 72 1 0 2366 2437 602456878 602456807 1.770000e-25 128.0
22 TraesCS1A01G264800 chr6B 100.000 66 0 0 2366 2431 156075740 156075675 8.240000e-24 122.0
23 TraesCS1A01G264800 chr6B 87.097 62 4 3 2726 2783 33306020 33305959 3.910000e-07 67.6
24 TraesCS1A01G264800 chr5D 98.551 69 1 0 2363 2431 410492022 410492090 8.240000e-24 122.0
25 TraesCS1A01G264800 chr5A 100.000 66 0 0 2366 2431 650133725 650133660 8.240000e-24 122.0
26 TraesCS1A01G264800 chr4B 100.000 66 0 0 2366 2431 43229777 43229712 8.240000e-24 122.0
27 TraesCS1A01G264800 chr4A 100.000 66 0 0 2366 2431 593348512 593348447 8.240000e-24 122.0
28 TraesCS1A01G264800 chr4A 90.698 43 3 1 2738 2779 672172965 672173007 8.470000e-04 56.5
29 TraesCS1A01G264800 chr2B 98.551 69 1 0 2363 2431 286979885 286979953 8.240000e-24 122.0
30 TraesCS1A01G264800 chr6A 85.965 57 6 2 2726 2781 26987138 26987193 6.550000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G264800 chr1A 460552635 460558686 6051 True 11177.000000 11177 100.000000 1 6052 1 chr1A.!!$R1 6051
1 TraesCS1A01G264800 chr1B 483114223 483119653 5430 True 2521.333333 4233 91.226333 2 5665 3 chr1B.!!$R2 5663
2 TraesCS1A01G264800 chr1D 360882769 360888907 6138 True 1905.000000 3125 89.847250 45 6052 4 chr1D.!!$R2 6007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 409 0.108615 ACAGAAATGGGAGCGAGACG 60.109 55.0 0.00 0.0 0.00 4.18 F
853 940 0.319555 GCAGCTCGGTGTTCAGTACA 60.320 55.0 0.00 0.0 0.00 2.90 F
2358 2534 0.036010 CGAGGGATGTTGCAGAGGTT 60.036 55.0 0.00 0.0 0.00 3.50 F
2764 2948 0.107165 ATTAAACCTCCGGCCTCTGC 60.107 55.0 0.00 0.0 0.00 4.26 F
2771 2955 0.394192 CTCCGGCCTCTGCATCATTA 59.606 55.0 0.00 0.0 40.13 1.90 F
3565 3762 0.396435 TTGATTCCACACGTGCCTCT 59.604 50.0 17.22 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 2471 0.617535 TCTCACCGACCACCATGGAT 60.618 55.0 21.47 2.71 40.96 3.41 R
2393 2569 0.366871 GATACTGCGTGCACGACAAG 59.633 55.0 41.19 32.17 43.02 3.16 R
4066 4574 0.111061 TGACAAGTGCCCTGCTCAAT 59.889 50.0 0.00 0.00 0.00 2.57 R
4703 5229 0.098376 CGGCTTTCATCTTCTGCTGC 59.902 55.0 0.00 0.00 0.00 5.25 R
4739 5265 5.122082 GTGAGATTTGAGCCTCTTTGAGAAG 59.878 44.0 0.00 0.00 0.00 2.85 R
5242 5769 0.627451 TGGCTCCTGGCAGATCATTT 59.373 50.0 17.94 0.00 44.10 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 0.690762 TAGGGGTTCAGTTCAGTGGC 59.309 55.000 0.00 0.00 0.00 5.01
65 66 2.551270 GTTCAGTTCAGTGGCGCG 59.449 61.111 0.00 0.00 0.00 6.86
129 133 7.094377 ACGACGAGGGTTTAACTTACTGTATTA 60.094 37.037 0.00 0.00 0.00 0.98
130 134 7.917505 CGACGAGGGTTTAACTTACTGTATTAT 59.082 37.037 0.00 0.00 0.00 1.28
131 135 9.591792 GACGAGGGTTTAACTTACTGTATTATT 57.408 33.333 0.00 0.00 0.00 1.40
132 136 9.948964 ACGAGGGTTTAACTTACTGTATTATTT 57.051 29.630 0.00 0.00 0.00 1.40
174 178 6.128363 CGGTTCTTATCTAAAACAGGACCAAC 60.128 42.308 0.00 0.00 0.00 3.77
210 214 2.928361 CGCCGGATGTAATCGTGC 59.072 61.111 5.05 0.00 46.86 5.34
211 215 1.591594 CGCCGGATGTAATCGTGCT 60.592 57.895 5.05 0.00 46.86 4.40
212 216 0.318360 CGCCGGATGTAATCGTGCTA 60.318 55.000 5.05 0.00 46.86 3.49
232 249 7.149128 CGTGCTAGTAAAATCTTTTGAGCAAAC 60.149 37.037 16.36 9.21 40.27 2.93
234 251 8.359642 TGCTAGTAAAATCTTTTGAGCAAACAT 58.640 29.630 14.09 0.00 38.04 2.71
257 274 0.321387 CATGATGGAGGAGCATCGGG 60.321 60.000 0.00 0.00 34.37 5.14
285 302 2.892425 GCCAGATTCGCCACGGAG 60.892 66.667 0.00 0.00 0.00 4.63
292 309 2.449031 ATTCGCCACGGAGCACAGAA 62.449 55.000 0.00 0.00 0.00 3.02
305 324 2.410730 AGCACAGAATTAACGCGTGTAC 59.589 45.455 14.98 0.00 0.00 2.90
306 325 2.410730 GCACAGAATTAACGCGTGTACT 59.589 45.455 14.98 5.66 0.00 2.73
308 327 2.410730 ACAGAATTAACGCGTGTACTGC 59.589 45.455 14.98 0.75 0.00 4.40
363 403 2.486966 GCGCACAGAAATGGGAGC 59.513 61.111 0.30 0.00 34.56 4.70
367 407 0.391661 GCACAGAAATGGGAGCGAGA 60.392 55.000 0.00 0.00 0.00 4.04
368 408 1.363744 CACAGAAATGGGAGCGAGAC 58.636 55.000 0.00 0.00 0.00 3.36
369 409 0.108615 ACAGAAATGGGAGCGAGACG 60.109 55.000 0.00 0.00 0.00 4.18
408 460 1.225475 CGCTGCGCTGAAACTTACG 60.225 57.895 19.32 6.16 0.00 3.18
413 465 0.717784 GCGCTGAAACTTACGTACCC 59.282 55.000 0.00 0.00 0.00 3.69
414 466 1.936203 GCGCTGAAACTTACGTACCCA 60.936 52.381 0.00 0.00 0.00 4.51
415 467 1.723003 CGCTGAAACTTACGTACCCAC 59.277 52.381 0.00 0.00 0.00 4.61
416 468 2.608752 CGCTGAAACTTACGTACCCACT 60.609 50.000 0.00 0.00 0.00 4.00
417 469 3.366273 CGCTGAAACTTACGTACCCACTA 60.366 47.826 0.00 0.00 0.00 2.74
418 470 3.922850 GCTGAAACTTACGTACCCACTAC 59.077 47.826 0.00 0.00 0.00 2.73
419 471 4.488879 CTGAAACTTACGTACCCACTACC 58.511 47.826 0.00 0.00 0.00 3.18
420 472 3.258123 TGAAACTTACGTACCCACTACCC 59.742 47.826 0.00 0.00 0.00 3.69
421 473 2.603075 ACTTACGTACCCACTACCCA 57.397 50.000 0.00 0.00 0.00 4.51
422 474 2.171003 ACTTACGTACCCACTACCCAC 58.829 52.381 0.00 0.00 0.00 4.61
423 475 1.478105 CTTACGTACCCACTACCCACC 59.522 57.143 0.00 0.00 0.00 4.61
424 476 0.324275 TACGTACCCACTACCCACCC 60.324 60.000 0.00 0.00 0.00 4.61
429 481 4.404098 CCACTACCCACCCCGTGC 62.404 72.222 0.00 0.00 31.34 5.34
441 497 2.043450 CCGTGCCCTCTCCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
455 511 0.387367 CTCTCTGTCGTTCCACGGTG 60.387 60.000 0.00 0.00 42.81 4.94
482 538 4.607557 CGAAACGCGTTCTGTCAATTTACT 60.608 41.667 26.77 4.04 33.70 2.24
483 539 4.806342 AACGCGTTCTGTCAATTTACTT 57.194 36.364 20.79 0.00 0.00 2.24
484 540 5.910637 AACGCGTTCTGTCAATTTACTTA 57.089 34.783 20.79 0.00 0.00 2.24
485 541 5.260027 ACGCGTTCTGTCAATTTACTTAC 57.740 39.130 5.58 0.00 0.00 2.34
486 542 4.151157 ACGCGTTCTGTCAATTTACTTACC 59.849 41.667 5.58 0.00 0.00 2.85
487 543 4.634991 GCGTTCTGTCAATTTACTTACCG 58.365 43.478 0.00 0.00 0.00 4.02
511 567 4.215742 TAACAGATCGCCGGCCCG 62.216 66.667 23.46 8.15 0.00 6.13
525 581 1.460273 GGCCCGTCTCCATCTCTCTC 61.460 65.000 0.00 0.00 0.00 3.20
526 582 0.467290 GCCCGTCTCCATCTCTCTCT 60.467 60.000 0.00 0.00 0.00 3.10
527 583 1.604604 CCCGTCTCCATCTCTCTCTC 58.395 60.000 0.00 0.00 0.00 3.20
528 584 1.142870 CCCGTCTCCATCTCTCTCTCT 59.857 57.143 0.00 0.00 0.00 3.10
548 634 2.278596 CTCGGCGACCCATACACG 60.279 66.667 4.99 0.00 0.00 4.49
573 659 2.107953 GGATCGGCACTGCTCCTC 59.892 66.667 0.00 0.00 0.00 3.71
693 780 0.735978 TGTACCGAATGAGCAGTGCG 60.736 55.000 10.00 0.00 0.00 5.34
712 799 1.465689 CGTTGCATCTGCTTTAACCCG 60.466 52.381 3.53 0.00 42.66 5.28
733 820 1.371183 GCCACTGCCAGTGTCAGTA 59.629 57.895 22.54 0.00 44.50 2.74
744 831 1.480137 AGTGTCAGTAGCCTGCTCATC 59.520 52.381 0.00 0.00 38.66 2.92
772 859 6.435430 TGCTCATGCTCAATAATAAACGTT 57.565 33.333 0.00 0.00 40.48 3.99
777 864 5.712217 TGCTCAATAATAAACGTTCCTCG 57.288 39.130 0.00 0.00 46.00 4.63
851 938 1.080772 CGCAGCTCGGTGTTCAGTA 60.081 57.895 0.00 0.00 33.78 2.74
852 939 1.344942 CGCAGCTCGGTGTTCAGTAC 61.345 60.000 0.00 0.00 33.78 2.73
853 940 0.319555 GCAGCTCGGTGTTCAGTACA 60.320 55.000 0.00 0.00 0.00 2.90
894 1007 3.570212 ACGCCACCTTTGCTCCCT 61.570 61.111 0.00 0.00 0.00 4.20
895 1008 2.747855 CGCCACCTTTGCTCCCTC 60.748 66.667 0.00 0.00 0.00 4.30
896 1009 2.361737 GCCACCTTTGCTCCCTCC 60.362 66.667 0.00 0.00 0.00 4.30
897 1010 2.356667 CCACCTTTGCTCCCTCCC 59.643 66.667 0.00 0.00 0.00 4.30
898 1011 2.356667 CACCTTTGCTCCCTCCCC 59.643 66.667 0.00 0.00 0.00 4.81
910 1023 3.431725 CTCCCCCGCGCTTGTTTC 61.432 66.667 5.56 0.00 0.00 2.78
913 1026 4.383602 CCCCGCGCTTGTTTCGTG 62.384 66.667 5.56 0.00 37.21 4.35
916 1029 4.012895 CGCGCTTGTTTCGTGGCT 62.013 61.111 5.56 0.00 34.22 4.75
917 1030 2.127232 GCGCTTGTTTCGTGGCTC 60.127 61.111 0.00 0.00 0.00 4.70
918 1031 2.556287 CGCTTGTTTCGTGGCTCC 59.444 61.111 0.00 0.00 0.00 4.70
919 1032 1.961277 CGCTTGTTTCGTGGCTCCT 60.961 57.895 0.00 0.00 0.00 3.69
920 1033 1.869690 GCTTGTTTCGTGGCTCCTC 59.130 57.895 0.00 0.00 0.00 3.71
921 1034 0.603975 GCTTGTTTCGTGGCTCCTCT 60.604 55.000 0.00 0.00 0.00 3.69
922 1035 1.884235 CTTGTTTCGTGGCTCCTCTT 58.116 50.000 0.00 0.00 0.00 2.85
923 1036 2.222027 CTTGTTTCGTGGCTCCTCTTT 58.778 47.619 0.00 0.00 0.00 2.52
924 1037 1.878953 TGTTTCGTGGCTCCTCTTTC 58.121 50.000 0.00 0.00 0.00 2.62
925 1038 1.416401 TGTTTCGTGGCTCCTCTTTCT 59.584 47.619 0.00 0.00 0.00 2.52
926 1039 2.158813 TGTTTCGTGGCTCCTCTTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
927 1040 2.879026 GTTTCGTGGCTCCTCTTTCTTT 59.121 45.455 0.00 0.00 0.00 2.52
928 1041 2.457366 TCGTGGCTCCTCTTTCTTTC 57.543 50.000 0.00 0.00 0.00 2.62
929 1042 1.002087 TCGTGGCTCCTCTTTCTTTCC 59.998 52.381 0.00 0.00 0.00 3.13
934 1047 0.741221 CTCCTCTTTCTTTCCGGCGG 60.741 60.000 22.51 22.51 0.00 6.13
1722 1895 2.973082 GCCACCAATGTGCCTTCC 59.027 61.111 0.00 0.00 41.35 3.46
1737 1913 1.687123 CCTTCCTACATGGGGTACGAG 59.313 57.143 0.00 0.00 36.20 4.18
1917 2093 2.550208 CCAGGACCTTCCACACTACAAC 60.550 54.545 0.00 0.00 39.61 3.32
1980 2156 2.363018 TCCAGCGAGGTGAGGGAG 60.363 66.667 3.61 0.00 39.02 4.30
1981 2157 4.154347 CCAGCGAGGTGAGGGAGC 62.154 72.222 3.61 0.00 0.00 4.70
2043 2219 1.357334 GTCGATGAGGGAGTCGCTC 59.643 63.158 26.03 26.03 42.60 5.03
2093 2269 0.804544 TCGAACCGGATCGACAATGC 60.805 55.000 30.15 0.00 46.12 3.56
2234 2410 1.153005 CCAATGCTGGAGGAGGAGC 60.153 63.158 0.00 0.00 46.92 4.70
2317 2493 1.656652 CATGGTGGTCGGTGAGAATC 58.343 55.000 0.00 0.00 0.00 2.52
2358 2534 0.036010 CGAGGGATGTTGCAGAGGTT 60.036 55.000 0.00 0.00 0.00 3.50
2359 2535 1.457346 GAGGGATGTTGCAGAGGTTG 58.543 55.000 0.00 0.00 0.00 3.77
2360 2536 0.773644 AGGGATGTTGCAGAGGTTGT 59.226 50.000 0.00 0.00 0.00 3.32
2361 2537 0.883833 GGGATGTTGCAGAGGTTGTG 59.116 55.000 0.00 0.00 0.00 3.33
2362 2538 0.883833 GGATGTTGCAGAGGTTGTGG 59.116 55.000 0.00 0.00 0.00 4.17
2363 2539 1.545428 GGATGTTGCAGAGGTTGTGGA 60.545 52.381 0.00 0.00 0.00 4.02
2364 2540 1.808945 GATGTTGCAGAGGTTGTGGAG 59.191 52.381 0.00 0.00 0.00 3.86
2365 2541 0.179020 TGTTGCAGAGGTTGTGGAGG 60.179 55.000 0.00 0.00 0.00 4.30
2366 2542 1.228245 TTGCAGAGGTTGTGGAGGC 60.228 57.895 0.00 0.00 0.00 4.70
2367 2543 1.993701 TTGCAGAGGTTGTGGAGGCA 61.994 55.000 0.00 0.00 0.00 4.75
2368 2544 1.673665 GCAGAGGTTGTGGAGGCAG 60.674 63.158 0.00 0.00 0.00 4.85
2369 2545 2.061220 CAGAGGTTGTGGAGGCAGA 58.939 57.895 0.00 0.00 0.00 4.26
2370 2546 0.321122 CAGAGGTTGTGGAGGCAGAC 60.321 60.000 0.00 0.00 0.00 3.51
2371 2547 1.374758 GAGGTTGTGGAGGCAGACG 60.375 63.158 0.00 0.00 0.00 4.18
2372 2548 2.358737 GGTTGTGGAGGCAGACGG 60.359 66.667 0.00 0.00 0.00 4.79
2373 2549 3.050275 GTTGTGGAGGCAGACGGC 61.050 66.667 0.00 0.00 43.74 5.68
2381 2557 3.190878 GGCAGACGGCTGGATTTG 58.809 61.111 22.33 0.00 42.53 2.32
2382 2558 2.409870 GGCAGACGGCTGGATTTGG 61.410 63.158 22.33 0.00 42.53 3.28
2383 2559 3.056313 GCAGACGGCTGGATTTGGC 62.056 63.158 22.33 0.00 42.53 4.52
2384 2560 2.044946 AGACGGCTGGATTTGGCC 60.045 61.111 0.00 0.00 44.43 5.36
2388 2564 3.508840 GGCTGGATTTGGCCGTCG 61.509 66.667 0.00 0.00 38.91 5.12
2389 2565 2.746277 GCTGGATTTGGCCGTCGT 60.746 61.111 0.00 0.00 0.00 4.34
2390 2566 2.750888 GCTGGATTTGGCCGTCGTC 61.751 63.158 0.00 0.00 0.00 4.20
2391 2567 1.079127 CTGGATTTGGCCGTCGTCT 60.079 57.895 0.00 0.00 0.00 4.18
2392 2568 1.079405 TGGATTTGGCCGTCGTCTC 60.079 57.895 0.00 0.00 0.00 3.36
2393 2569 1.814169 GGATTTGGCCGTCGTCTCC 60.814 63.158 0.00 0.00 0.00 3.71
2394 2570 1.218316 GATTTGGCCGTCGTCTCCT 59.782 57.895 0.00 0.00 0.00 3.69
2395 2571 0.391263 GATTTGGCCGTCGTCTCCTT 60.391 55.000 0.00 0.00 0.00 3.36
2396 2572 0.673644 ATTTGGCCGTCGTCTCCTTG 60.674 55.000 0.00 0.00 0.00 3.61
2397 2573 2.035237 TTTGGCCGTCGTCTCCTTGT 62.035 55.000 0.00 0.00 0.00 3.16
2398 2574 2.126031 GGCCGTCGTCTCCTTGTC 60.126 66.667 0.00 0.00 0.00 3.18
2399 2575 2.504244 GCCGTCGTCTCCTTGTCG 60.504 66.667 0.00 0.00 0.00 4.35
2400 2576 2.952245 CCGTCGTCTCCTTGTCGT 59.048 61.111 0.00 0.00 0.00 4.34
2401 2577 1.442184 CCGTCGTCTCCTTGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
2402 2578 2.081212 CGTCGTCTCCTTGTCGTGC 61.081 63.158 0.00 0.00 0.00 5.34
2403 2579 1.007734 GTCGTCTCCTTGTCGTGCA 60.008 57.895 0.00 0.00 0.00 4.57
2404 2580 1.007734 TCGTCTCCTTGTCGTGCAC 60.008 57.895 6.82 6.82 0.00 4.57
2405 2581 2.365068 CGTCTCCTTGTCGTGCACG 61.365 63.158 32.76 32.76 41.45 5.34
2406 2582 2.355837 TCTCCTTGTCGTGCACGC 60.356 61.111 33.63 26.73 39.60 5.34
2407 2583 2.661537 CTCCTTGTCGTGCACGCA 60.662 61.111 33.63 28.85 39.60 5.24
2408 2584 2.661537 TCCTTGTCGTGCACGCAG 60.662 61.111 33.63 25.63 39.60 5.18
2410 2586 1.663388 CCTTGTCGTGCACGCAGTA 60.663 57.895 33.63 14.65 41.61 2.74
2411 2587 1.014044 CCTTGTCGTGCACGCAGTAT 61.014 55.000 33.63 0.00 41.61 2.12
2412 2588 0.366871 CTTGTCGTGCACGCAGTATC 59.633 55.000 33.63 17.93 41.61 2.24
2413 2589 1.341369 TTGTCGTGCACGCAGTATCG 61.341 55.000 33.63 8.67 41.61 2.92
2414 2590 1.800315 GTCGTGCACGCAGTATCGT 60.800 57.895 33.63 0.00 41.61 3.73
2415 2591 1.513373 TCGTGCACGCAGTATCGTC 60.513 57.895 33.63 0.00 41.61 4.20
2416 2592 1.514228 CGTGCACGCAGTATCGTCT 60.514 57.895 28.16 0.00 41.61 4.18
2417 2593 1.071019 CGTGCACGCAGTATCGTCTT 61.071 55.000 28.16 0.00 41.61 3.01
2418 2594 1.068474 GTGCACGCAGTATCGTCTTT 58.932 50.000 0.00 0.00 41.61 2.52
2419 2595 2.256174 GTGCACGCAGTATCGTCTTTA 58.744 47.619 0.00 0.00 41.61 1.85
2420 2596 2.027688 GTGCACGCAGTATCGTCTTTAC 59.972 50.000 0.00 0.00 41.61 2.01
2421 2597 2.256174 GCACGCAGTATCGTCTTTACA 58.744 47.619 0.00 0.00 41.61 2.41
2422 2598 2.279136 GCACGCAGTATCGTCTTTACAG 59.721 50.000 0.00 0.00 41.61 2.74
2423 2599 2.279136 CACGCAGTATCGTCTTTACAGC 59.721 50.000 0.00 0.00 41.61 4.40
2424 2600 2.094906 ACGCAGTATCGTCTTTACAGCA 60.095 45.455 0.00 0.00 41.94 4.41
2425 2601 2.531912 CGCAGTATCGTCTTTACAGCAG 59.468 50.000 0.00 0.00 33.22 4.24
2426 2602 3.512680 GCAGTATCGTCTTTACAGCAGT 58.487 45.455 0.00 0.00 33.67 4.40
2427 2603 3.927142 GCAGTATCGTCTTTACAGCAGTT 59.073 43.478 0.00 0.00 33.67 3.16
2428 2604 4.389077 GCAGTATCGTCTTTACAGCAGTTT 59.611 41.667 0.00 0.00 33.67 2.66
2429 2605 5.444745 GCAGTATCGTCTTTACAGCAGTTTC 60.445 44.000 0.00 0.00 33.67 2.78
2430 2606 4.857588 AGTATCGTCTTTACAGCAGTTTCG 59.142 41.667 0.00 0.00 0.00 3.46
2431 2607 3.088194 TCGTCTTTACAGCAGTTTCGT 57.912 42.857 0.00 0.00 0.00 3.85
2444 2620 3.616560 GCAGTTTCGTTGTGGAGGAGATA 60.617 47.826 0.00 0.00 0.00 1.98
2462 2638 5.337975 GGAGATAAAGGAGCAGTTCAACTCT 60.338 44.000 0.00 0.00 33.29 3.24
2557 2733 5.696724 GGATCTTGAAATGTGAGTATACCCG 59.303 44.000 0.00 0.00 0.00 5.28
2579 2755 5.344128 CCGCTTCTCTTTTCAATTGATTGTG 59.656 40.000 9.40 4.17 38.84 3.33
2588 2764 8.089597 TCTTTTCAATTGATTGTGCATACATGT 58.910 29.630 9.40 2.69 38.84 3.21
2598 2774 4.487019 TGTGCATACATGTTCAATTGCTG 58.513 39.130 2.30 0.00 0.00 4.41
2633 2817 5.246203 AGTGTACTCTGAATTCCTAACAGCA 59.754 40.000 2.27 0.00 0.00 4.41
2639 2823 6.126825 ACTCTGAATTCCTAACAGCATCAGAT 60.127 38.462 2.27 0.00 40.49 2.90
2640 2824 6.656902 TCTGAATTCCTAACAGCATCAGATT 58.343 36.000 2.27 0.00 37.49 2.40
2643 2827 7.114754 TGAATTCCTAACAGCATCAGATTCTT 58.885 34.615 2.27 0.00 0.00 2.52
2650 2834 6.519679 AACAGCATCAGATTCTTATGCAAA 57.480 33.333 26.52 0.00 46.66 3.68
2657 2841 6.187125 TCAGATTCTTATGCAAACTCAAGC 57.813 37.500 0.00 0.00 0.00 4.01
2660 2844 5.477984 AGATTCTTATGCAAACTCAAGCCAA 59.522 36.000 0.00 0.00 0.00 4.52
2661 2845 4.503741 TCTTATGCAAACTCAAGCCAAC 57.496 40.909 0.00 0.00 0.00 3.77
2662 2846 4.144297 TCTTATGCAAACTCAAGCCAACT 58.856 39.130 0.00 0.00 0.00 3.16
2663 2847 4.584325 TCTTATGCAAACTCAAGCCAACTT 59.416 37.500 0.00 0.00 36.19 2.66
2664 2848 5.767665 TCTTATGCAAACTCAAGCCAACTTA 59.232 36.000 0.00 0.00 33.74 2.24
2666 2850 2.034558 TGCAAACTCAAGCCAACTTAGC 59.965 45.455 0.00 0.00 33.74 3.09
2668 2852 3.502211 GCAAACTCAAGCCAACTTAGCTA 59.498 43.478 0.00 0.00 40.49 3.32
2669 2853 4.023193 GCAAACTCAAGCCAACTTAGCTAA 60.023 41.667 5.94 5.94 40.49 3.09
2671 2855 6.128007 GCAAACTCAAGCCAACTTAGCTAATA 60.128 38.462 6.64 0.00 40.49 0.98
2673 2857 7.559590 AACTCAAGCCAACTTAGCTAATATG 57.440 36.000 6.64 8.90 40.49 1.78
2676 2860 7.281100 ACTCAAGCCAACTTAGCTAATATGTTC 59.719 37.037 6.64 3.97 40.49 3.18
2678 2862 6.253946 AGCCAACTTAGCTAATATGTTCCT 57.746 37.500 6.64 4.30 39.29 3.36
2679 2863 6.058183 AGCCAACTTAGCTAATATGTTCCTG 58.942 40.000 6.64 0.00 39.29 3.86
2680 2864 5.823045 GCCAACTTAGCTAATATGTTCCTGT 59.177 40.000 6.64 0.00 31.28 4.00
2681 2865 6.990349 GCCAACTTAGCTAATATGTTCCTGTA 59.010 38.462 6.64 0.00 31.28 2.74
2682 2866 7.661847 GCCAACTTAGCTAATATGTTCCTGTAT 59.338 37.037 6.64 0.00 31.28 2.29
2683 2867 9.561069 CCAACTTAGCTAATATGTTCCTGTATT 57.439 33.333 6.64 0.00 31.28 1.89
2698 2882 9.953565 TGTTCCTGTATTAACTTAGCACTATTT 57.046 29.630 0.00 0.00 0.00 1.40
2759 2943 3.398694 GGAGATTAAACCTCCGGCC 57.601 57.895 10.39 0.00 40.58 6.13
2760 2944 0.837940 GGAGATTAAACCTCCGGCCT 59.162 55.000 0.00 0.00 40.58 5.19
2761 2945 1.202663 GGAGATTAAACCTCCGGCCTC 60.203 57.143 0.00 0.00 40.58 4.70
2762 2946 1.763545 GAGATTAAACCTCCGGCCTCT 59.236 52.381 0.00 0.00 0.00 3.69
2763 2947 1.486726 AGATTAAACCTCCGGCCTCTG 59.513 52.381 0.00 0.00 0.00 3.35
2764 2948 0.107165 ATTAAACCTCCGGCCTCTGC 60.107 55.000 0.00 0.00 0.00 4.26
2765 2949 1.485294 TTAAACCTCCGGCCTCTGCA 61.485 55.000 0.00 0.00 40.13 4.41
2766 2950 1.271840 TAAACCTCCGGCCTCTGCAT 61.272 55.000 0.00 0.00 40.13 3.96
2767 2951 2.543067 AAACCTCCGGCCTCTGCATC 62.543 60.000 0.00 0.00 40.13 3.91
2768 2952 3.473647 CCTCCGGCCTCTGCATCA 61.474 66.667 0.00 0.00 40.13 3.07
2769 2953 2.815945 CCTCCGGCCTCTGCATCAT 61.816 63.158 0.00 0.00 40.13 2.45
2770 2954 1.147824 CTCCGGCCTCTGCATCATT 59.852 57.895 0.00 0.00 40.13 2.57
2771 2955 0.394192 CTCCGGCCTCTGCATCATTA 59.606 55.000 0.00 0.00 40.13 1.90
2772 2956 1.002888 CTCCGGCCTCTGCATCATTAT 59.997 52.381 0.00 0.00 40.13 1.28
2773 2957 1.162698 CCGGCCTCTGCATCATTATG 58.837 55.000 0.00 0.00 40.13 1.90
2774 2958 1.271001 CCGGCCTCTGCATCATTATGA 60.271 52.381 0.00 0.00 40.13 2.15
2775 2959 2.617276 CCGGCCTCTGCATCATTATGAT 60.617 50.000 0.00 1.25 37.65 2.45
2895 3080 5.048434 CCACAGAAAGAAATTCTTCCTCACC 60.048 44.000 8.86 0.00 46.39 4.02
2899 3084 5.242615 AGAAAGAAATTCTTCCTCACCTTGC 59.757 40.000 8.86 0.00 46.39 4.01
2904 3089 1.130054 TCTTCCTCACCTTGCCTGCT 61.130 55.000 0.00 0.00 0.00 4.24
2905 3090 0.676151 CTTCCTCACCTTGCCTGCTC 60.676 60.000 0.00 0.00 0.00 4.26
2910 3095 1.959282 CTCACCTTGCCTGCTCTTTTT 59.041 47.619 0.00 0.00 0.00 1.94
2911 3096 1.956477 TCACCTTGCCTGCTCTTTTTC 59.044 47.619 0.00 0.00 0.00 2.29
2912 3097 1.682854 CACCTTGCCTGCTCTTTTTCA 59.317 47.619 0.00 0.00 0.00 2.69
2913 3098 2.101249 CACCTTGCCTGCTCTTTTTCAA 59.899 45.455 0.00 0.00 0.00 2.69
2914 3099 2.967887 ACCTTGCCTGCTCTTTTTCAAT 59.032 40.909 0.00 0.00 0.00 2.57
2915 3100 3.006217 ACCTTGCCTGCTCTTTTTCAATC 59.994 43.478 0.00 0.00 0.00 2.67
2916 3101 3.006110 CCTTGCCTGCTCTTTTTCAATCA 59.994 43.478 0.00 0.00 0.00 2.57
2917 3102 4.322499 CCTTGCCTGCTCTTTTTCAATCAT 60.322 41.667 0.00 0.00 0.00 2.45
2918 3103 5.105635 CCTTGCCTGCTCTTTTTCAATCATA 60.106 40.000 0.00 0.00 0.00 2.15
2919 3104 5.314923 TGCCTGCTCTTTTTCAATCATAC 57.685 39.130 0.00 0.00 0.00 2.39
2923 3108 7.137426 GCCTGCTCTTTTTCAATCATACTATG 58.863 38.462 0.00 0.00 0.00 2.23
3014 3199 2.952310 GCCTTGTTGTTCTCTGAACCTT 59.048 45.455 7.81 0.00 0.00 3.50
3016 3201 4.199310 CCTTGTTGTTCTCTGAACCTTCA 58.801 43.478 7.81 2.79 35.57 3.02
3086 3271 9.699985 CTCAGAATTCAAGTAAAAGAATCGATG 57.300 33.333 8.44 0.00 33.58 3.84
3103 3288 0.398696 ATGGTACCAGCGGTGTTGAA 59.601 50.000 21.41 0.00 36.19 2.69
3160 3345 4.437682 TGTGTGGGAGAAAAGACTTCAT 57.562 40.909 0.00 0.00 0.00 2.57
3189 3374 6.934056 AGATCATGGTATGCTACTCTTCATC 58.066 40.000 0.00 0.00 0.00 2.92
3227 3412 3.947612 ATTCCTGCTGTCATGATTCCT 57.052 42.857 0.00 0.00 0.00 3.36
3277 3462 3.118811 GCCTGATAGTGCTCTCAAACTCT 60.119 47.826 0.00 0.00 0.00 3.24
3301 3486 6.003234 ACGTAATATTCTCCATCTGTCGAG 57.997 41.667 0.00 0.00 0.00 4.04
3348 3535 6.015603 TGGTTGACTCATATGCACAAAATTGA 60.016 34.615 0.00 0.00 0.00 2.57
3350 3537 5.643664 TGACTCATATGCACAAAATTGAGC 58.356 37.500 8.37 8.37 43.65 4.26
3559 3756 5.644636 ACCGTATAAAATTGATTCCACACGT 59.355 36.000 0.00 0.00 0.00 4.49
3565 3762 0.396435 TTGATTCCACACGTGCCTCT 59.604 50.000 17.22 0.00 0.00 3.69
3667 3864 3.104843 GATGAGCTACATCCACACCTC 57.895 52.381 12.51 0.00 46.78 3.85
3707 3904 6.465084 GGGTATGTGAAGTCTAGTTCAACTT 58.535 40.000 0.00 0.00 38.17 2.66
3789 3986 7.592938 TGTGAAATTGTTAGGATGACATTCAC 58.407 34.615 12.98 12.98 42.12 3.18
3792 3989 8.946085 TGAAATTGTTAGGATGACATTCACTAC 58.054 33.333 0.00 0.00 0.00 2.73
3795 3992 9.520515 AATTGTTAGGATGACATTCACTACTTT 57.479 29.630 0.00 0.00 0.00 2.66
3796 3993 8.918202 TTGTTAGGATGACATTCACTACTTTT 57.082 30.769 0.00 0.00 0.00 2.27
3891 4088 9.683069 GTCCAATATTTGAATTATTAGCACTGG 57.317 33.333 0.00 0.00 0.00 4.00
3892 4089 9.639563 TCCAATATTTGAATTATTAGCACTGGA 57.360 29.630 0.00 0.00 0.00 3.86
3907 4104 3.117794 CACTGGATGTTGCAACAGTTTG 58.882 45.455 33.44 24.59 41.85 2.93
3914 4111 5.630680 GGATGTTGCAACAGTTTGAATACAG 59.369 40.000 33.44 0.00 43.04 2.74
3915 4112 5.574891 TGTTGCAACAGTTTGAATACAGT 57.425 34.783 27.96 0.00 34.24 3.55
3954 4462 4.997395 ACCATCGCAACATTACCTATGATC 59.003 41.667 0.00 0.00 37.69 2.92
4030 4538 2.159693 GCGCCACTAAACTAAGCTTCAC 60.160 50.000 0.00 0.00 0.00 3.18
4057 4565 6.424032 AGGACATCCTAAAGTTTGGTTATCC 58.576 40.000 0.00 2.15 46.48 2.59
4066 4574 8.852135 CCTAAAGTTTGGTTATCCTGTTTTGTA 58.148 33.333 0.00 0.00 34.23 2.41
4088 4596 0.607489 GAGCAGGGCACTTGTCATGT 60.607 55.000 0.00 0.00 33.50 3.21
4151 4659 3.751479 AAACAAAAGATTCCCTGGCAC 57.249 42.857 0.00 0.00 0.00 5.01
4162 4672 2.126882 TCCCTGGCACATAGCTATTGT 58.873 47.619 2.64 3.34 44.79 2.71
4328 4854 2.028748 GTGCCACAGGAAGCAATTTCAT 60.029 45.455 0.00 0.00 41.48 2.57
4388 4914 5.310409 AGAATGGACCTGAAAGAGAAACA 57.690 39.130 0.00 0.00 34.07 2.83
4403 4929 6.681729 AGAGAAACATCCAAGGTTACACTA 57.318 37.500 0.00 0.00 0.00 2.74
4448 4974 4.536765 ACTGGTGTTCCTGTTTCAGAAAT 58.463 39.130 0.00 0.00 41.97 2.17
4460 4986 8.054572 TCCTGTTTCAGAAATTGGATCATATCA 58.945 33.333 12.97 0.00 32.44 2.15
4691 5217 2.738846 GCACATATTATGGGAGCGACAG 59.261 50.000 10.16 0.00 35.01 3.51
4703 5229 3.175240 CGACAGGACGAAGCGCAG 61.175 66.667 11.47 2.53 35.09 5.18
4719 5245 1.202043 CGCAGCAGCAGAAGATGAAAG 60.202 52.381 0.82 0.00 42.27 2.62
4739 5265 7.649973 TGAAAGCCGACTATTTATCTAGAGAC 58.350 38.462 0.00 0.00 0.00 3.36
4777 5303 5.047802 TCAAATCTCACCAAAAGGATCAAGC 60.048 40.000 0.00 0.00 0.00 4.01
4842 5368 3.918253 GACAATGGCAGGGCGGTCA 62.918 63.158 0.00 0.00 0.00 4.02
4860 5386 1.151668 CAATAGCCGCATGGTAGCTC 58.848 55.000 0.00 0.00 38.06 4.09
5065 5591 2.704572 AGCCTGATTTCAAGGTCTTCG 58.295 47.619 0.00 0.00 0.00 3.79
5072 5598 1.604604 TTCAAGGTCTTCGCCCTTTG 58.395 50.000 0.00 0.00 40.35 2.77
5073 5599 0.889186 TCAAGGTCTTCGCCCTTTGC 60.889 55.000 0.00 0.00 40.35 3.68
5121 5648 5.517924 AGAAGAGATGATCTCAGGAGTCAA 58.482 41.667 23.17 0.00 45.73 3.18
5162 5689 3.316283 TCACAATACCGTTGTACCGAAC 58.684 45.455 0.00 0.00 0.00 3.95
5163 5690 3.005684 TCACAATACCGTTGTACCGAACT 59.994 43.478 0.00 0.00 0.00 3.01
5164 5691 4.217334 TCACAATACCGTTGTACCGAACTA 59.783 41.667 0.00 0.00 0.00 2.24
5187 5714 5.185454 ACGTAATCCAGAAATGATTGCAGA 58.815 37.500 0.00 0.00 35.38 4.26
5224 5751 2.582636 ACTGGGGCAGTTTCCTCATTAT 59.417 45.455 0.00 0.00 42.59 1.28
5242 5769 7.066307 TCATTATCTATTGCTGCTTCTACCA 57.934 36.000 0.00 0.00 0.00 3.25
5416 5943 9.443323 TGTACATTGTAACAGCTGTATTTATGT 57.557 29.630 26.62 26.62 0.00 2.29
5509 6039 4.580167 TCCTTGGAGTTTGATGTTTCAGTG 59.420 41.667 0.00 0.00 32.27 3.66
5549 6079 4.180817 GTCTCCTTAGAGCAAGAAGAAGC 58.819 47.826 0.00 0.00 40.22 3.86
5550 6080 3.119316 TCTCCTTAGAGCAAGAAGAAGCG 60.119 47.826 0.00 0.00 40.22 4.68
5551 6081 2.826128 TCCTTAGAGCAAGAAGAAGCGA 59.174 45.455 0.00 0.00 36.22 4.93
5552 6082 3.449018 TCCTTAGAGCAAGAAGAAGCGAT 59.551 43.478 0.00 0.00 36.22 4.58
5553 6083 4.081420 TCCTTAGAGCAAGAAGAAGCGATT 60.081 41.667 0.00 0.00 36.22 3.34
5641 6176 6.067350 GGCTGATGGATCTTCTATTTCCTTT 58.933 40.000 0.00 0.00 0.00 3.11
5671 6206 7.402054 TCCAAGAGGCTCAGAAAATATTTACA 58.598 34.615 18.26 0.00 33.74 2.41
5676 6211 8.897752 AGAGGCTCAGAAAATATTTACATGTTC 58.102 33.333 18.26 0.00 0.00 3.18
5809 6345 9.429359 TGTATTCAAAAAGTGTTCAAAACATGT 57.571 25.926 0.00 0.00 44.35 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.490040 TGAACTGAACCCCTAAAAATTCTGAG 59.510 38.462 0.00 0.00 0.00 3.35
41 42 2.488347 GCCACTGAACTGAACCCCTAAA 60.488 50.000 0.00 0.00 0.00 1.85
42 43 1.073284 GCCACTGAACTGAACCCCTAA 59.927 52.381 0.00 0.00 0.00 2.69
43 44 0.690762 GCCACTGAACTGAACCCCTA 59.309 55.000 0.00 0.00 0.00 3.53
62 63 1.368641 TGATGGTCAAAGATTCCGCG 58.631 50.000 0.00 0.00 0.00 6.46
65 66 3.489738 CGGCATTGATGGTCAAAGATTCC 60.490 47.826 0.00 0.00 40.12 3.01
99 100 0.788391 GTTAAACCCTCGTCGTGCAG 59.212 55.000 0.00 0.00 0.00 4.41
129 133 4.702131 ACCGCTTGCTCAATTAAGAGAAAT 59.298 37.500 0.00 0.00 37.87 2.17
130 134 4.072131 ACCGCTTGCTCAATTAAGAGAAA 58.928 39.130 0.00 0.00 37.87 2.52
131 135 3.674997 ACCGCTTGCTCAATTAAGAGAA 58.325 40.909 0.00 0.00 37.87 2.87
132 136 3.334583 ACCGCTTGCTCAATTAAGAGA 57.665 42.857 0.00 0.00 37.87 3.10
133 137 3.686726 AGAACCGCTTGCTCAATTAAGAG 59.313 43.478 0.00 0.00 38.68 2.85
134 138 3.674997 AGAACCGCTTGCTCAATTAAGA 58.325 40.909 0.00 0.00 0.00 2.10
210 214 9.132521 CCATGTTTGCTCAAAAGATTTTACTAG 57.867 33.333 0.00 0.00 29.60 2.57
211 215 7.598493 GCCATGTTTGCTCAAAAGATTTTACTA 59.402 33.333 0.00 0.00 29.60 1.82
212 216 6.424812 GCCATGTTTGCTCAAAAGATTTTACT 59.575 34.615 0.00 0.00 29.60 2.24
224 228 1.478916 CATCATGGCCATGTTTGCTCA 59.521 47.619 38.18 22.06 39.72 4.26
232 249 0.894184 GCTCCTCCATCATGGCCATG 60.894 60.000 35.76 35.76 37.47 3.66
234 251 1.358051 ATGCTCCTCCATCATGGCCA 61.358 55.000 8.56 8.56 37.47 5.36
257 274 3.120649 GGCGAATCTGGCGTGATAATTAC 60.121 47.826 0.00 0.00 0.00 1.89
285 302 2.410730 AGTACACGCGTTAATTCTGTGC 59.589 45.455 10.22 6.36 33.96 4.57
363 403 0.584785 CATCATTGCGTTGCGTCTCG 60.585 55.000 0.00 0.00 0.00 4.04
367 407 1.804151 AGTAACATCATTGCGTTGCGT 59.196 42.857 2.61 0.00 33.56 5.24
368 408 2.168384 CAGTAACATCATTGCGTTGCG 58.832 47.619 2.61 0.00 33.56 4.85
369 409 1.913403 GCAGTAACATCATTGCGTTGC 59.087 47.619 2.61 1.65 0.00 4.17
370 410 2.518949 GGCAGTAACATCATTGCGTTG 58.481 47.619 0.00 0.00 37.43 4.10
371 411 1.130373 CGGCAGTAACATCATTGCGTT 59.870 47.619 0.00 0.00 37.43 4.84
408 460 2.361567 CGGGGTGGGTAGTGGGTAC 61.362 68.421 0.00 0.00 0.00 3.34
413 465 4.404098 GGCACGGGGTGGGTAGTG 62.404 72.222 0.00 0.00 37.63 2.74
422 474 4.787280 AGAGGAGAGGGCACGGGG 62.787 72.222 0.00 0.00 0.00 5.73
423 475 3.151022 GAGAGGAGAGGGCACGGG 61.151 72.222 0.00 0.00 0.00 5.28
424 476 2.043450 AGAGAGGAGAGGGCACGG 60.043 66.667 0.00 0.00 0.00 4.94
429 481 1.099689 GAACGACAGAGAGGAGAGGG 58.900 60.000 0.00 0.00 0.00 4.30
473 529 2.004017 CCGCTGCGGTAAGTAAATTGA 58.996 47.619 31.72 0.00 42.73 2.57
486 542 2.860628 GCGATCTGTTACCGCTGCG 61.861 63.158 16.34 16.34 44.83 5.18
487 543 3.006706 GCGATCTGTTACCGCTGC 58.993 61.111 0.00 0.00 44.83 5.25
511 567 2.443255 AGGGAGAGAGAGAGATGGAGAC 59.557 54.545 0.00 0.00 0.00 3.36
525 581 2.978298 TATGGGTCGCCGAGGGAGAG 62.978 65.000 0.00 0.00 30.97 3.20
526 582 3.064491 TATGGGTCGCCGAGGGAGA 62.064 63.158 0.00 0.00 0.00 3.71
527 583 2.520982 TATGGGTCGCCGAGGGAG 60.521 66.667 0.00 0.00 0.00 4.30
528 584 2.836360 GTATGGGTCGCCGAGGGA 60.836 66.667 0.00 0.00 0.00 4.20
656 742 0.603707 CAGCAGGGTGAGCGAAAAGA 60.604 55.000 0.00 0.00 37.01 2.52
693 780 1.539827 ACGGGTTAAAGCAGATGCAAC 59.460 47.619 7.68 2.99 45.16 4.17
712 799 3.044305 GACACTGGCAGTGGCGAC 61.044 66.667 41.21 27.70 45.42 5.19
733 820 1.148723 GCATGAGGATGAGCAGGCT 59.851 57.895 0.00 0.00 38.63 4.58
744 831 6.812879 TTATTATTGAGCATGAGCATGAGG 57.187 37.500 14.27 0.00 45.49 3.86
772 859 3.134792 GAGGAGCTGCGACGAGGA 61.135 66.667 0.00 0.00 0.00 3.71
777 864 4.057428 ACGTGGAGGAGCTGCGAC 62.057 66.667 0.00 0.00 0.00 5.19
778 865 4.056125 CACGTGGAGGAGCTGCGA 62.056 66.667 7.95 0.00 0.00 5.10
896 1009 4.383602 CACGAAACAAGCGCGGGG 62.384 66.667 8.83 0.00 0.00 5.73
897 1010 4.383602 CCACGAAACAAGCGCGGG 62.384 66.667 8.83 0.00 0.00 6.13
910 1023 1.443802 GGAAAGAAAGAGGAGCCACG 58.556 55.000 0.00 0.00 0.00 4.94
912 1025 0.324943 CCGGAAAGAAAGAGGAGCCA 59.675 55.000 0.00 0.00 0.00 4.75
913 1026 1.027255 GCCGGAAAGAAAGAGGAGCC 61.027 60.000 5.05 0.00 0.00 4.70
914 1027 1.362406 CGCCGGAAAGAAAGAGGAGC 61.362 60.000 5.05 0.00 0.00 4.70
915 1028 0.741221 CCGCCGGAAAGAAAGAGGAG 60.741 60.000 5.05 0.00 0.00 3.69
916 1029 1.295423 CCGCCGGAAAGAAAGAGGA 59.705 57.895 5.05 0.00 0.00 3.71
917 1030 1.745489 CCCGCCGGAAAGAAAGAGG 60.745 63.158 5.05 0.00 0.00 3.69
918 1031 2.399356 GCCCGCCGGAAAGAAAGAG 61.399 63.158 5.05 0.00 0.00 2.85
919 1032 2.359478 GCCCGCCGGAAAGAAAGA 60.359 61.111 5.05 0.00 0.00 2.52
920 1033 3.799755 CGCCCGCCGGAAAGAAAG 61.800 66.667 5.05 0.00 0.00 2.62
1497 1646 3.564218 ATCTCGGGCCTGCCATCC 61.564 66.667 6.73 0.00 37.98 3.51
1498 1647 2.281345 CATCTCGGGCCTGCCATC 60.281 66.667 6.73 0.00 37.98 3.51
1499 1648 4.575973 GCATCTCGGGCCTGCCAT 62.576 66.667 6.73 0.00 37.98 4.40
1722 1895 1.605710 CCGTACTCGTACCCCATGTAG 59.394 57.143 1.92 0.00 35.01 2.74
1869 2045 2.059541 GAGTCGAACGGGTTGAAGAAG 58.940 52.381 0.00 0.00 0.00 2.85
1917 2093 1.665442 CGGAGCAAACCCCTTTTGG 59.335 57.895 0.00 0.00 44.34 3.28
2043 2219 4.394712 ACCGCCTTCCTCGCCTTG 62.395 66.667 0.00 0.00 0.00 3.61
2093 2269 1.003355 ACCTTGGCACTGACATCCG 60.003 57.895 0.00 0.00 0.00 4.18
2193 2369 2.509052 TGTCACAGTCACAGCTACAC 57.491 50.000 0.00 0.00 0.00 2.90
2246 2422 3.378399 TTCGCCGGATCATCGCCAA 62.378 57.895 5.05 0.00 0.00 4.52
2295 2471 0.617535 TCTCACCGACCACCATGGAT 60.618 55.000 21.47 2.71 40.96 3.41
2358 2534 4.007644 CAGCCGTCTGCCTCCACA 62.008 66.667 0.00 0.00 42.71 4.17
2359 2535 4.767255 CCAGCCGTCTGCCTCCAC 62.767 72.222 0.00 0.00 42.71 4.02
2361 2537 2.543067 AAATCCAGCCGTCTGCCTCC 62.543 60.000 0.00 0.00 42.71 4.30
2362 2538 1.078143 AAATCCAGCCGTCTGCCTC 60.078 57.895 0.00 0.00 42.71 4.70
2363 2539 1.377725 CAAATCCAGCCGTCTGCCT 60.378 57.895 0.00 0.00 42.71 4.75
2364 2540 2.409870 CCAAATCCAGCCGTCTGCC 61.410 63.158 0.00 0.00 42.71 4.85
2365 2541 3.056313 GCCAAATCCAGCCGTCTGC 62.056 63.158 0.00 0.00 39.00 4.26
2366 2542 2.409870 GGCCAAATCCAGCCGTCTG 61.410 63.158 0.00 0.00 39.87 3.51
2367 2543 2.044946 GGCCAAATCCAGCCGTCT 60.045 61.111 0.00 0.00 39.87 4.18
2371 2547 3.508840 CGACGGCCAAATCCAGCC 61.509 66.667 2.24 0.00 46.17 4.85
2372 2548 2.746277 ACGACGGCCAAATCCAGC 60.746 61.111 2.24 0.00 0.00 4.85
2373 2549 1.079127 AGACGACGGCCAAATCCAG 60.079 57.895 2.24 0.00 0.00 3.86
2374 2550 1.079405 GAGACGACGGCCAAATCCA 60.079 57.895 2.24 0.00 0.00 3.41
2375 2551 1.814169 GGAGACGACGGCCAAATCC 60.814 63.158 2.24 0.00 0.00 3.01
2376 2552 0.391263 AAGGAGACGACGGCCAAATC 60.391 55.000 2.24 0.00 0.00 2.17
2377 2553 0.673644 CAAGGAGACGACGGCCAAAT 60.674 55.000 2.24 0.00 0.00 2.32
2378 2554 1.301401 CAAGGAGACGACGGCCAAA 60.301 57.895 2.24 0.00 0.00 3.28
2379 2555 2.342279 CAAGGAGACGACGGCCAA 59.658 61.111 2.24 0.00 0.00 4.52
2380 2556 2.915659 ACAAGGAGACGACGGCCA 60.916 61.111 2.24 0.00 0.00 5.36
2381 2557 2.126031 GACAAGGAGACGACGGCC 60.126 66.667 0.00 0.00 0.00 6.13
2382 2558 2.504244 CGACAAGGAGACGACGGC 60.504 66.667 0.00 0.00 37.60 5.68
2383 2559 1.442184 CACGACAAGGAGACGACGG 60.442 63.158 0.00 0.00 38.73 4.79
2384 2560 2.081212 GCACGACAAGGAGACGACG 61.081 63.158 0.00 0.00 38.73 5.12
2385 2561 1.007734 TGCACGACAAGGAGACGAC 60.008 57.895 0.00 0.00 38.73 4.34
2386 2562 1.007734 GTGCACGACAAGGAGACGA 60.008 57.895 0.00 0.00 38.73 4.20
2387 2563 2.365068 CGTGCACGACAAGGAGACG 61.365 63.158 34.93 1.26 43.02 4.18
2388 2564 2.658707 GCGTGCACGACAAGGAGAC 61.659 63.158 41.19 17.19 43.02 3.36
2389 2565 2.355837 GCGTGCACGACAAGGAGA 60.356 61.111 41.19 0.00 43.02 3.71
2390 2566 2.661537 TGCGTGCACGACAAGGAG 60.662 61.111 41.19 11.65 43.02 3.69
2391 2567 2.077821 TACTGCGTGCACGACAAGGA 62.078 55.000 41.19 27.15 43.02 3.36
2392 2568 1.014044 ATACTGCGTGCACGACAAGG 61.014 55.000 41.19 25.94 43.02 3.61
2393 2569 0.366871 GATACTGCGTGCACGACAAG 59.633 55.000 41.19 32.17 43.02 3.16
2394 2570 1.341369 CGATACTGCGTGCACGACAA 61.341 55.000 41.19 23.94 43.02 3.18
2395 2571 1.799916 CGATACTGCGTGCACGACA 60.800 57.895 41.19 32.66 43.02 4.35
2396 2572 1.730593 GACGATACTGCGTGCACGAC 61.731 60.000 41.19 30.17 45.72 4.34
2397 2573 1.513373 GACGATACTGCGTGCACGA 60.513 57.895 41.19 24.37 45.72 4.35
2398 2574 1.071019 AAGACGATACTGCGTGCACG 61.071 55.000 34.01 34.01 45.72 5.34
2399 2575 1.068474 AAAGACGATACTGCGTGCAC 58.932 50.000 6.82 6.82 45.72 4.57
2400 2576 2.256174 GTAAAGACGATACTGCGTGCA 58.744 47.619 0.00 0.00 45.72 4.57
2401 2577 2.256174 TGTAAAGACGATACTGCGTGC 58.744 47.619 0.00 0.00 45.72 5.34
2402 2578 2.279136 GCTGTAAAGACGATACTGCGTG 59.721 50.000 0.00 0.00 45.72 5.34
2403 2579 2.094906 TGCTGTAAAGACGATACTGCGT 60.095 45.455 13.61 0.00 45.61 5.24
2404 2580 2.526077 TGCTGTAAAGACGATACTGCG 58.474 47.619 13.61 0.00 45.61 5.18
2405 2581 3.512680 ACTGCTGTAAAGACGATACTGC 58.487 45.455 12.42 12.42 44.02 4.40
2406 2582 5.220043 CGAAACTGCTGTAAAGACGATACTG 60.220 44.000 0.00 0.00 0.00 2.74
2407 2583 4.857588 CGAAACTGCTGTAAAGACGATACT 59.142 41.667 0.00 0.00 0.00 2.12
2408 2584 4.620184 ACGAAACTGCTGTAAAGACGATAC 59.380 41.667 0.00 0.00 0.00 2.24
2409 2585 4.801891 ACGAAACTGCTGTAAAGACGATA 58.198 39.130 0.00 0.00 0.00 2.92
2410 2586 3.650139 ACGAAACTGCTGTAAAGACGAT 58.350 40.909 0.00 0.00 0.00 3.73
2411 2587 3.088194 ACGAAACTGCTGTAAAGACGA 57.912 42.857 0.00 0.00 0.00 4.20
2412 2588 3.000925 ACAACGAAACTGCTGTAAAGACG 59.999 43.478 0.00 2.16 0.00 4.18
2413 2589 4.271687 CACAACGAAACTGCTGTAAAGAC 58.728 43.478 0.00 0.00 0.00 3.01
2414 2590 3.311322 CCACAACGAAACTGCTGTAAAGA 59.689 43.478 0.00 0.00 0.00 2.52
2415 2591 3.311322 TCCACAACGAAACTGCTGTAAAG 59.689 43.478 0.00 0.00 0.00 1.85
2416 2592 3.271729 TCCACAACGAAACTGCTGTAAA 58.728 40.909 0.00 0.00 0.00 2.01
2417 2593 2.869801 CTCCACAACGAAACTGCTGTAA 59.130 45.455 0.00 0.00 0.00 2.41
2418 2594 2.479837 CTCCACAACGAAACTGCTGTA 58.520 47.619 0.00 0.00 0.00 2.74
2419 2595 1.299541 CTCCACAACGAAACTGCTGT 58.700 50.000 0.00 0.00 0.00 4.40
2420 2596 0.588252 CCTCCACAACGAAACTGCTG 59.412 55.000 0.00 0.00 0.00 4.41
2421 2597 0.468226 TCCTCCACAACGAAACTGCT 59.532 50.000 0.00 0.00 0.00 4.24
2422 2598 0.868406 CTCCTCCACAACGAAACTGC 59.132 55.000 0.00 0.00 0.00 4.40
2423 2599 2.526304 TCTCCTCCACAACGAAACTG 57.474 50.000 0.00 0.00 0.00 3.16
2424 2600 4.884668 TTATCTCCTCCACAACGAAACT 57.115 40.909 0.00 0.00 0.00 2.66
2425 2601 4.392138 CCTTTATCTCCTCCACAACGAAAC 59.608 45.833 0.00 0.00 0.00 2.78
2426 2602 4.285003 TCCTTTATCTCCTCCACAACGAAA 59.715 41.667 0.00 0.00 0.00 3.46
2427 2603 3.835978 TCCTTTATCTCCTCCACAACGAA 59.164 43.478 0.00 0.00 0.00 3.85
2428 2604 3.437213 TCCTTTATCTCCTCCACAACGA 58.563 45.455 0.00 0.00 0.00 3.85
2429 2605 3.786635 CTCCTTTATCTCCTCCACAACG 58.213 50.000 0.00 0.00 0.00 4.10
2430 2606 3.055094 TGCTCCTTTATCTCCTCCACAAC 60.055 47.826 0.00 0.00 0.00 3.32
2431 2607 3.181329 TGCTCCTTTATCTCCTCCACAA 58.819 45.455 0.00 0.00 0.00 3.33
2557 2733 5.693104 TGCACAATCAATTGAAAAGAGAAGC 59.307 36.000 13.09 9.18 40.14 3.86
2579 2755 4.560035 GTCACAGCAATTGAACATGTATGC 59.440 41.667 10.34 5.62 0.00 3.14
2588 2764 4.398988 ACTTTCAGTGTCACAGCAATTGAA 59.601 37.500 10.34 2.53 0.00 2.69
2633 2817 6.183360 GGCTTGAGTTTGCATAAGAATCTGAT 60.183 38.462 0.00 0.00 0.00 2.90
2639 2823 4.584325 AGTTGGCTTGAGTTTGCATAAGAA 59.416 37.500 0.00 0.00 0.00 2.52
2640 2824 4.144297 AGTTGGCTTGAGTTTGCATAAGA 58.856 39.130 0.00 0.00 0.00 2.10
2643 2827 4.082787 GCTAAGTTGGCTTGAGTTTGCATA 60.083 41.667 3.61 0.00 36.22 3.14
2650 2834 6.653989 ACATATTAGCTAAGTTGGCTTGAGT 58.346 36.000 19.55 8.52 40.74 3.41
2657 2841 9.561069 AATACAGGAACATATTAGCTAAGTTGG 57.439 33.333 12.54 4.26 0.00 3.77
2729 2913 8.208224 GGAGGTTTAATCTCCTTTTTGGAAAAA 58.792 33.333 16.49 0.00 45.63 1.94
2730 2914 7.470841 CGGAGGTTTAATCTCCTTTTTGGAAAA 60.471 37.037 20.55 0.00 46.43 2.29
2731 2915 6.015772 CGGAGGTTTAATCTCCTTTTTGGAAA 60.016 38.462 20.55 0.00 46.43 3.13
2732 2916 5.475564 CGGAGGTTTAATCTCCTTTTTGGAA 59.524 40.000 20.55 0.00 46.43 3.53
2733 2917 5.007682 CGGAGGTTTAATCTCCTTTTTGGA 58.992 41.667 20.55 0.00 46.43 3.53
2734 2918 4.157840 CCGGAGGTTTAATCTCCTTTTTGG 59.842 45.833 20.55 10.96 46.43 3.28
2735 2919 5.310720 CCGGAGGTTTAATCTCCTTTTTG 57.689 43.478 20.55 6.00 46.43 2.44
2752 2936 0.394192 TAATGATGCAGAGGCCGGAG 59.606 55.000 5.05 0.00 40.13 4.63
2753 2937 1.059098 ATAATGATGCAGAGGCCGGA 58.941 50.000 5.05 0.00 40.13 5.14
2754 2938 1.162698 CATAATGATGCAGAGGCCGG 58.837 55.000 0.00 0.00 40.13 6.13
2755 2939 2.174363 TCATAATGATGCAGAGGCCG 57.826 50.000 0.00 0.00 40.13 6.13
2804 2988 9.292195 TCTCATACATTATGTTATGTACTCCGA 57.708 33.333 2.23 0.00 42.15 4.55
2834 3018 8.948631 TGATCAGAAGAAAGATACACAATACC 57.051 34.615 0.00 0.00 0.00 2.73
2870 3055 5.765182 GTGAGGAAGAATTTCTTTCTGTGGA 59.235 40.000 22.08 3.55 42.23 4.02
2879 3064 3.075134 AGGCAAGGTGAGGAAGAATTTCT 59.925 43.478 0.00 0.00 33.68 2.52
2880 3065 3.192212 CAGGCAAGGTGAGGAAGAATTTC 59.808 47.826 0.00 0.00 0.00 2.17
2881 3066 3.160269 CAGGCAAGGTGAGGAAGAATTT 58.840 45.455 0.00 0.00 0.00 1.82
2882 3067 2.800250 CAGGCAAGGTGAGGAAGAATT 58.200 47.619 0.00 0.00 0.00 2.17
2883 3068 1.615384 GCAGGCAAGGTGAGGAAGAAT 60.615 52.381 0.00 0.00 0.00 2.40
2889 3074 0.251077 AAAGAGCAGGCAAGGTGAGG 60.251 55.000 0.00 0.00 0.00 3.86
2895 3080 4.247267 TGATTGAAAAAGAGCAGGCAAG 57.753 40.909 0.00 0.00 0.00 4.01
2899 3084 8.218338 ACATAGTATGATTGAAAAAGAGCAGG 57.782 34.615 17.13 0.00 0.00 4.85
2923 3108 7.825761 TGGCCAAGTTAGTTAACCTATTAAGAC 59.174 37.037 0.61 0.00 36.88 3.01
2937 3122 4.332828 GTCAAGGTAATGGCCAAGTTAGT 58.667 43.478 10.96 0.00 0.00 2.24
2952 3137 3.244078 TGAAACTATCACTGCGTCAAGGT 60.244 43.478 0.00 0.00 31.50 3.50
2983 3168 2.159179 ACAACAAGGCAAAGGTTCCT 57.841 45.000 0.00 0.00 0.00 3.36
3014 3199 0.103390 TGTTCCGCGTTCTTCACTGA 59.897 50.000 4.92 0.00 0.00 3.41
3016 3201 1.798813 GATTGTTCCGCGTTCTTCACT 59.201 47.619 4.92 0.00 0.00 3.41
3025 3210 1.261989 CAATTGCTGATTGTTCCGCG 58.738 50.000 0.00 0.00 40.23 6.46
3086 3271 1.530323 ATTTCAACACCGCTGGTACC 58.470 50.000 4.43 4.43 32.11 3.34
3160 3345 6.556639 AGAGTAGCATACCATGATCTCCTTA 58.443 40.000 0.00 0.00 44.47 2.69
3277 3462 6.348295 GCTCGACAGATGGAGAATATTACGTA 60.348 42.308 0.00 0.00 32.61 3.57
3301 3486 1.935873 TGCATTTCAGAGCATACGAGC 59.064 47.619 0.00 0.00 35.51 5.03
3348 3535 8.823220 AATTAATTTAACACCACTATGAGGCT 57.177 30.769 0.00 0.00 0.00 4.58
3380 3567 5.182487 TGAAAAGCGCCACTTCATAGATAA 58.818 37.500 2.29 0.00 37.75 1.75
3423 3617 9.512435 CAAGGAAAAATGCTAATGAGATACTTG 57.488 33.333 0.00 0.00 0.00 3.16
3559 3756 2.695666 GAGCAGTGTCCTTATAGAGGCA 59.304 50.000 0.00 0.00 45.87 4.75
3565 3762 3.708451 TCTGGTGAGCAGTGTCCTTATA 58.292 45.455 11.78 0.00 0.00 0.98
3667 3864 2.403252 ACCCCTGAATGAGCTTAACG 57.597 50.000 0.00 0.00 0.00 3.18
3795 3992 9.823647 TGTTCCTTATGACTGCAAAAATAAAAA 57.176 25.926 0.00 0.00 0.00 1.94
3796 3993 9.995003 ATGTTCCTTATGACTGCAAAAATAAAA 57.005 25.926 0.00 0.00 0.00 1.52
3800 3997 7.444299 ACAATGTTCCTTATGACTGCAAAAAT 58.556 30.769 0.00 0.00 0.00 1.82
3812 4009 4.159557 ACAAGGGCAACAATGTTCCTTAT 58.840 39.130 15.82 5.42 38.98 1.73
3883 4080 2.153645 CTGTTGCAACATCCAGTGCTA 58.846 47.619 31.17 5.76 38.41 3.49
3885 4082 0.670162 ACTGTTGCAACATCCAGTGC 59.330 50.000 31.17 1.63 38.41 4.40
3886 4083 3.117794 CAAACTGTTGCAACATCCAGTG 58.882 45.455 31.17 20.50 38.14 3.66
3891 4088 6.208644 ACTGTATTCAAACTGTTGCAACATC 58.791 36.000 31.17 5.60 38.41 3.06
3892 4089 6.147864 ACTGTATTCAAACTGTTGCAACAT 57.852 33.333 31.17 16.10 38.41 2.71
3895 4092 7.897575 AAAAACTGTATTCAAACTGTTGCAA 57.102 28.000 0.00 0.00 40.21 4.08
3994 4502 4.925068 AGTGGCGCAATCAGAAATTTATC 58.075 39.130 10.83 0.00 0.00 1.75
4000 4508 3.146066 AGTTTAGTGGCGCAATCAGAAA 58.854 40.909 10.83 0.00 0.00 2.52
4057 4565 2.557924 TGCCCTGCTCAATACAAAACAG 59.442 45.455 0.00 0.00 0.00 3.16
4066 4574 0.111061 TGACAAGTGCCCTGCTCAAT 59.889 50.000 0.00 0.00 0.00 2.57
4242 4768 4.454161 TGACAACAATTTATGGTCAGTCCG 59.546 41.667 0.00 0.00 39.52 4.79
4358 4884 3.144068 TCAGGTCCATTCTTGGGGATA 57.856 47.619 0.00 0.00 43.81 2.59
4364 4890 5.532406 TGTTTCTCTTTCAGGTCCATTCTTG 59.468 40.000 0.00 0.00 0.00 3.02
4376 4902 6.262273 GTGTAACCTTGGATGTTTCTCTTTCA 59.738 38.462 0.00 0.00 0.00 2.69
4383 4909 6.935208 AGTTCTAGTGTAACCTTGGATGTTTC 59.065 38.462 0.00 0.00 37.80 2.78
4385 4911 6.435292 AGTTCTAGTGTAACCTTGGATGTT 57.565 37.500 0.00 0.00 37.80 2.71
4386 4912 6.952358 TCTAGTTCTAGTGTAACCTTGGATGT 59.048 38.462 6.73 0.00 37.80 3.06
4388 4914 8.431910 TTTCTAGTTCTAGTGTAACCTTGGAT 57.568 34.615 6.73 0.00 37.80 3.41
4403 4929 7.659390 CAGTTCAGAAGTTCCATTTCTAGTTCT 59.341 37.037 0.00 0.00 33.30 3.01
4448 4974 4.269183 ACGCCTTTTGTGATATGATCCAA 58.731 39.130 0.00 0.00 0.00 3.53
4460 4986 3.624410 GGGTTTCGATATACGCCTTTTGT 59.376 43.478 0.00 0.00 42.26 2.83
4703 5229 0.098376 CGGCTTTCATCTTCTGCTGC 59.902 55.000 0.00 0.00 0.00 5.25
4719 5245 7.173562 TGAGAAGTCTCTAGATAAATAGTCGGC 59.826 40.741 9.63 0.00 43.25 5.54
4739 5265 5.122082 GTGAGATTTGAGCCTCTTTGAGAAG 59.878 44.000 0.00 0.00 0.00 2.85
4842 5368 1.051812 AGAGCTACCATGCGGCTATT 58.948 50.000 0.00 0.00 36.37 1.73
4860 5386 1.542472 TCTTGTGTGCAATGCATCCAG 59.458 47.619 12.38 9.33 41.91 3.86
5065 5591 2.159142 CCATCATTCAGAAGCAAAGGGC 60.159 50.000 0.00 0.00 45.30 5.19
5072 5598 4.507710 TGTACAGACCATCATTCAGAAGC 58.492 43.478 0.00 0.00 0.00 3.86
5073 5599 6.820152 TCATTGTACAGACCATCATTCAGAAG 59.180 38.462 0.00 0.00 0.00 2.85
5121 5648 8.938801 TTGTGATTGGCATATCTTATTACCAT 57.061 30.769 9.83 0.00 0.00 3.55
5162 5689 6.479990 TCTGCAATCATTTCTGGATTACGTAG 59.520 38.462 0.00 0.00 33.40 3.51
5163 5690 6.345298 TCTGCAATCATTTCTGGATTACGTA 58.655 36.000 0.00 0.00 33.40 3.57
5164 5691 5.185454 TCTGCAATCATTTCTGGATTACGT 58.815 37.500 0.00 0.00 33.40 3.57
5168 5695 6.978674 ATCATCTGCAATCATTTCTGGATT 57.021 33.333 0.00 0.00 35.43 3.01
5187 5714 3.828451 CCCCAGTGTTTGTTCAGAATCAT 59.172 43.478 0.00 0.00 0.00 2.45
5224 5751 5.744171 TCATTTGGTAGAAGCAGCAATAGA 58.256 37.500 0.00 0.00 35.95 1.98
5242 5769 0.627451 TGGCTCCTGGCAGATCATTT 59.373 50.000 17.94 0.00 44.10 2.32
5549 6079 3.876274 TCTCTTCTCCCTCAACAATCG 57.124 47.619 0.00 0.00 0.00 3.34
5550 6080 7.392953 AGAAAATTCTCTTCTCCCTCAACAATC 59.607 37.037 0.00 0.00 29.94 2.67
5551 6081 7.237255 AGAAAATTCTCTTCTCCCTCAACAAT 58.763 34.615 0.00 0.00 29.94 2.71
5552 6082 6.605119 AGAAAATTCTCTTCTCCCTCAACAA 58.395 36.000 0.00 0.00 29.94 2.83
5553 6083 6.192970 AGAAAATTCTCTTCTCCCTCAACA 57.807 37.500 0.00 0.00 29.94 3.33
5618 6153 8.563732 GTTAAAGGAAATAGAAGATCCATCAGC 58.436 37.037 0.00 0.00 35.62 4.26
5641 6176 4.908601 TTTCTGAGCCTCTTGGATGTTA 57.091 40.909 0.00 0.00 34.57 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.