Multiple sequence alignment - TraesCS1A01G264300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G264300 chr1A 100.000 3659 0 0 1 3659 459945982 459949640 0.000000e+00 6758.0
1 TraesCS1A01G264300 chr1B 93.748 3215 121 34 461 3659 482450614 482453764 0.000000e+00 4750.0
2 TraesCS1A01G264300 chr1D 96.008 1478 49 6 2185 3659 360388389 360389859 0.000000e+00 2394.0
3 TraesCS1A01G264300 chr1D 92.153 1695 65 27 521 2187 360386424 360388078 0.000000e+00 2331.0
4 TraesCS1A01G264300 chr1D 88.839 224 25 0 1 224 425563328 425563551 3.600000e-70 276.0
5 TraesCS1A01G264300 chr7D 90.179 224 22 0 1 224 237857984 237857761 3.570000e-75 292.0
6 TraesCS1A01G264300 chr7D 90.179 224 22 0 1 224 453389796 453390019 3.570000e-75 292.0
7 TraesCS1A01G264300 chr7D 89.140 221 23 1 4 223 497565526 497565746 1.290000e-69 274.0
8 TraesCS1A01G264300 chr7D 88.393 224 26 0 1 224 395933599 395933376 1.670000e-68 270.0
9 TraesCS1A01G264300 chr6B 89.333 225 23 1 1 224 258756157 258756381 7.740000e-72 281.0
10 TraesCS1A01G264300 chr2D 89.286 224 23 1 1 224 643188606 643188828 2.780000e-71 279.0
11 TraesCS1A01G264300 chr6D 88.839 224 25 0 1 224 337043106 337042883 3.600000e-70 276.0
12 TraesCS1A01G264300 chr3D 89.140 221 23 1 4 224 448289951 448290170 1.290000e-69 274.0
13 TraesCS1A01G264300 chr3D 87.565 193 24 0 998 1190 516382178 516382370 1.320000e-54 224.0
14 TraesCS1A01G264300 chr3D 87.619 105 11 1 359 461 456633707 456633811 1.780000e-23 121.0
15 TraesCS1A01G264300 chr3D 90.141 71 7 0 1326 1396 516382802 516382872 3.890000e-15 93.5
16 TraesCS1A01G264300 chr3B 88.083 193 23 0 998 1190 679642965 679643157 2.840000e-56 230.0
17 TraesCS1A01G264300 chr3B 88.350 103 12 0 364 466 603465883 603465985 1.380000e-24 124.0
18 TraesCS1A01G264300 chr3B 90.141 71 7 0 1326 1396 679643602 679643672 3.890000e-15 93.5
19 TraesCS1A01G264300 chr3A 88.083 193 23 0 998 1190 651584496 651584688 2.840000e-56 230.0
20 TraesCS1A01G264300 chr3A 90.141 71 7 0 1326 1396 651585303 651585373 3.890000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G264300 chr1A 459945982 459949640 3658 False 6758.0 6758 100.0000 1 3659 1 chr1A.!!$F1 3658
1 TraesCS1A01G264300 chr1B 482450614 482453764 3150 False 4750.0 4750 93.7480 461 3659 1 chr1B.!!$F1 3198
2 TraesCS1A01G264300 chr1D 360386424 360389859 3435 False 2362.5 2394 94.0805 521 3659 2 chr1D.!!$F2 3138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.032416 ACTGCCTAGGACCACGGTAT 60.032 55.000 14.75 0.0 0.00 2.73 F
823 834 0.914902 AGCCACCCTCCTTTACTCCC 60.915 60.000 0.00 0.0 0.00 4.30 F
1316 1347 1.000171 AGCTGCTAACTTTGCCTTTGC 60.000 47.619 0.00 0.0 38.26 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 1350 0.259065 ATCCTCGGTAGCCTGACAGA 59.741 55.0 3.32 0.0 0.00 3.41 R
1635 1674 0.378257 CGTTAATCAGCTGCCGCAAT 59.622 50.0 9.47 0.0 39.10 3.56 R
3095 3451 0.952984 GGAGCAACTTCAGCGCTTCT 60.953 55.0 7.50 0.0 35.75 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.951643 TCATCATGAGCGAAATGAACTAATG 58.048 36.000 0.09 0.00 37.58 1.90
25 26 5.739752 TCATGAGCGAAATGAACTAATGG 57.260 39.130 0.00 0.00 31.17 3.16
26 27 5.185454 TCATGAGCGAAATGAACTAATGGT 58.815 37.500 0.00 0.00 31.17 3.55
27 28 5.647658 TCATGAGCGAAATGAACTAATGGTT 59.352 36.000 0.00 0.00 41.40 3.67
28 29 5.957842 TGAGCGAAATGAACTAATGGTTT 57.042 34.783 0.00 0.00 38.41 3.27
29 30 5.698832 TGAGCGAAATGAACTAATGGTTTG 58.301 37.500 0.00 0.00 38.41 2.93
30 31 5.240623 TGAGCGAAATGAACTAATGGTTTGT 59.759 36.000 0.00 0.00 38.41 2.83
31 32 5.460646 AGCGAAATGAACTAATGGTTTGTG 58.539 37.500 0.00 0.00 38.41 3.33
32 33 4.089923 GCGAAATGAACTAATGGTTTGTGC 59.910 41.667 0.00 0.00 38.41 4.57
33 34 5.460646 CGAAATGAACTAATGGTTTGTGCT 58.539 37.500 0.00 0.00 38.41 4.40
34 35 6.607689 CGAAATGAACTAATGGTTTGTGCTA 58.392 36.000 0.00 0.00 38.41 3.49
35 36 7.081349 CGAAATGAACTAATGGTTTGTGCTAA 58.919 34.615 0.00 0.00 38.41 3.09
36 37 7.593273 CGAAATGAACTAATGGTTTGTGCTAAA 59.407 33.333 0.00 0.00 38.41 1.85
37 38 9.255304 GAAATGAACTAATGGTTTGTGCTAAAA 57.745 29.630 0.00 0.00 38.41 1.52
38 39 9.777297 AAATGAACTAATGGTTTGTGCTAAAAT 57.223 25.926 0.00 0.00 38.41 1.82
39 40 8.986477 ATGAACTAATGGTTTGTGCTAAAATC 57.014 30.769 0.00 0.00 38.41 2.17
40 41 8.177119 TGAACTAATGGTTTGTGCTAAAATCT 57.823 30.769 0.00 0.00 38.41 2.40
41 42 8.081633 TGAACTAATGGTTTGTGCTAAAATCTG 58.918 33.333 0.00 0.00 38.41 2.90
42 43 7.759489 ACTAATGGTTTGTGCTAAAATCTGA 57.241 32.000 0.00 0.00 0.00 3.27
43 44 8.353423 ACTAATGGTTTGTGCTAAAATCTGAT 57.647 30.769 0.00 0.00 0.00 2.90
44 45 8.806146 ACTAATGGTTTGTGCTAAAATCTGATT 58.194 29.630 0.00 0.00 0.00 2.57
45 46 7.894376 AATGGTTTGTGCTAAAATCTGATTG 57.106 32.000 3.22 0.00 0.00 2.67
46 47 5.782047 TGGTTTGTGCTAAAATCTGATTGG 58.218 37.500 3.22 0.00 0.00 3.16
47 48 5.538053 TGGTTTGTGCTAAAATCTGATTGGA 59.462 36.000 3.22 0.00 0.00 3.53
48 49 5.863935 GGTTTGTGCTAAAATCTGATTGGAC 59.136 40.000 3.22 4.04 0.00 4.02
49 50 6.446318 GTTTGTGCTAAAATCTGATTGGACA 58.554 36.000 3.22 6.56 0.00 4.02
50 51 6.647334 TTGTGCTAAAATCTGATTGGACAA 57.353 33.333 16.66 16.66 0.00 3.18
51 52 6.258230 TGTGCTAAAATCTGATTGGACAAG 57.742 37.500 3.22 0.00 0.00 3.16
52 53 6.003326 TGTGCTAAAATCTGATTGGACAAGA 58.997 36.000 3.22 0.00 0.00 3.02
53 54 6.149973 TGTGCTAAAATCTGATTGGACAAGAG 59.850 38.462 3.22 0.00 0.00 2.85
54 55 5.124457 TGCTAAAATCTGATTGGACAAGAGC 59.876 40.000 3.22 6.17 0.00 4.09
55 56 5.124457 GCTAAAATCTGATTGGACAAGAGCA 59.876 40.000 3.22 0.00 0.00 4.26
56 57 6.349611 GCTAAAATCTGATTGGACAAGAGCAA 60.350 38.462 3.22 0.00 0.00 3.91
57 58 6.409524 AAAATCTGATTGGACAAGAGCAAA 57.590 33.333 3.22 0.00 0.00 3.68
58 59 6.409524 AAATCTGATTGGACAAGAGCAAAA 57.590 33.333 3.22 0.00 0.00 2.44
59 60 6.409524 AATCTGATTGGACAAGAGCAAAAA 57.590 33.333 1.31 0.00 0.00 1.94
77 78 1.375551 AAAAACGCACGGACTCTTGT 58.624 45.000 0.00 0.00 0.00 3.16
78 79 1.375551 AAAACGCACGGACTCTTGTT 58.624 45.000 0.00 0.00 0.00 2.83
79 80 0.935196 AAACGCACGGACTCTTGTTC 59.065 50.000 0.00 0.00 0.00 3.18
85 86 3.814577 CGGACTCTTGTTCGGTCAT 57.185 52.632 0.00 0.00 41.25 3.06
86 87 2.080286 CGGACTCTTGTTCGGTCATT 57.920 50.000 0.00 0.00 41.25 2.57
87 88 1.993370 CGGACTCTTGTTCGGTCATTC 59.007 52.381 0.00 0.00 41.25 2.67
88 89 2.347731 GGACTCTTGTTCGGTCATTCC 58.652 52.381 0.00 0.00 0.00 3.01
99 100 1.223187 GGTCATTCCGTCAAACGTGT 58.777 50.000 0.00 0.00 40.58 4.49
100 101 1.193874 GGTCATTCCGTCAAACGTGTC 59.806 52.381 0.00 0.00 40.58 3.67
101 102 1.862201 GTCATTCCGTCAAACGTGTCA 59.138 47.619 0.00 0.00 40.58 3.58
102 103 2.285756 GTCATTCCGTCAAACGTGTCAA 59.714 45.455 0.00 0.00 40.58 3.18
103 104 2.542178 TCATTCCGTCAAACGTGTCAAG 59.458 45.455 0.00 0.00 40.58 3.02
104 105 1.292061 TTCCGTCAAACGTGTCAAGG 58.708 50.000 0.00 0.00 40.58 3.61
105 106 0.531090 TCCGTCAAACGTGTCAAGGG 60.531 55.000 0.00 0.00 40.58 3.95
106 107 1.278637 CGTCAAACGTGTCAAGGGC 59.721 57.895 0.00 0.00 36.74 5.19
107 108 1.433053 CGTCAAACGTGTCAAGGGCA 61.433 55.000 0.00 0.00 36.74 5.36
108 109 0.307760 GTCAAACGTGTCAAGGGCAG 59.692 55.000 0.00 0.00 0.00 4.85
109 110 1.008538 CAAACGTGTCAAGGGCAGC 60.009 57.895 0.00 0.00 0.00 5.25
110 111 2.542907 AAACGTGTCAAGGGCAGCG 61.543 57.895 0.00 0.00 0.00 5.18
161 162 4.139420 CGAACGAGCTGCCGCAAG 62.139 66.667 2.05 0.00 39.10 4.01
162 163 3.044305 GAACGAGCTGCCGCAAGT 61.044 61.111 2.05 0.00 39.10 3.16
163 164 3.016474 GAACGAGCTGCCGCAAGTC 62.016 63.158 2.05 0.00 39.10 3.01
164 165 3.807631 AACGAGCTGCCGCAAGTCA 62.808 57.895 2.05 0.00 39.10 3.41
165 166 3.782244 CGAGCTGCCGCAAGTCAC 61.782 66.667 2.05 0.00 39.10 3.67
166 167 2.666190 GAGCTGCCGCAAGTCACA 60.666 61.111 2.05 0.00 39.10 3.58
167 168 2.959357 GAGCTGCCGCAAGTCACAC 61.959 63.158 2.05 0.00 39.10 3.82
168 169 3.279116 GCTGCCGCAAGTCACACA 61.279 61.111 0.00 0.00 35.78 3.72
169 170 2.633657 CTGCCGCAAGTCACACAC 59.366 61.111 0.00 0.00 0.00 3.82
170 171 3.227372 CTGCCGCAAGTCACACACG 62.227 63.158 0.00 0.00 0.00 4.49
171 172 3.269347 GCCGCAAGTCACACACGT 61.269 61.111 0.00 0.00 0.00 4.49
172 173 2.928361 CCGCAAGTCACACACGTC 59.072 61.111 0.00 0.00 0.00 4.34
173 174 2.539503 CGCAAGTCACACACGTCG 59.460 61.111 0.00 0.00 0.00 5.12
174 175 1.942223 CGCAAGTCACACACGTCGA 60.942 57.895 0.00 0.00 0.00 4.20
175 176 1.558383 GCAAGTCACACACGTCGAC 59.442 57.895 5.18 5.18 0.00 4.20
176 177 1.818221 GCAAGTCACACACGTCGACC 61.818 60.000 10.58 0.00 0.00 4.79
177 178 1.298863 AAGTCACACACGTCGACCG 60.299 57.895 10.58 7.90 44.03 4.79
178 179 3.392440 GTCACACACGTCGACCGC 61.392 66.667 10.58 0.00 41.42 5.68
179 180 4.634133 TCACACACGTCGACCGCC 62.634 66.667 10.58 0.00 41.42 6.13
188 189 4.492160 TCGACCGCCGACATCTGC 62.492 66.667 0.00 0.00 43.23 4.26
189 190 4.794439 CGACCGCCGACATCTGCA 62.794 66.667 0.00 0.00 41.76 4.41
190 191 2.202932 GACCGCCGACATCTGCAT 60.203 61.111 0.00 0.00 0.00 3.96
191 192 2.512286 ACCGCCGACATCTGCATG 60.512 61.111 0.00 0.00 35.92 4.06
192 193 3.274586 CCGCCGACATCTGCATGG 61.275 66.667 0.00 0.00 33.82 3.66
193 194 3.274586 CGCCGACATCTGCATGGG 61.275 66.667 0.00 0.00 33.82 4.00
194 195 3.589881 GCCGACATCTGCATGGGC 61.590 66.667 0.00 0.00 41.68 5.36
195 196 3.274586 CCGACATCTGCATGGGCG 61.275 66.667 0.00 1.05 45.35 6.13
206 207 2.044946 ATGGGCGGAAAGCTGTCC 60.045 61.111 13.57 13.57 45.79 4.02
213 214 2.482326 GGAAAGCTGTCCGGAATGG 58.518 57.895 7.32 0.00 40.09 3.16
214 215 1.657751 GGAAAGCTGTCCGGAATGGC 61.658 60.000 7.32 11.27 37.80 4.40
215 216 1.657751 GAAAGCTGTCCGGAATGGCC 61.658 60.000 5.23 0.00 37.80 5.36
216 217 3.645268 AAGCTGTCCGGAATGGCCC 62.645 63.158 5.23 0.00 37.80 5.80
217 218 4.424711 GCTGTCCGGAATGGCCCA 62.425 66.667 5.23 0.00 37.80 5.36
218 219 2.124570 CTGTCCGGAATGGCCCAG 60.125 66.667 5.23 4.07 37.80 4.45
219 220 4.424711 TGTCCGGAATGGCCCAGC 62.425 66.667 5.23 0.00 37.80 4.85
231 232 2.516930 CCCAGCCGGCAATCGATT 60.517 61.111 31.54 4.39 42.43 3.34
232 233 2.120909 CCCAGCCGGCAATCGATTT 61.121 57.895 31.54 0.76 42.43 2.17
233 234 1.666209 CCCAGCCGGCAATCGATTTT 61.666 55.000 31.54 0.00 42.43 1.82
234 235 1.021202 CCAGCCGGCAATCGATTTTA 58.979 50.000 31.54 0.00 42.43 1.52
235 236 1.608590 CCAGCCGGCAATCGATTTTAT 59.391 47.619 31.54 0.00 42.43 1.40
236 237 2.034558 CCAGCCGGCAATCGATTTTATT 59.965 45.455 31.54 0.00 42.43 1.40
237 238 3.300009 CAGCCGGCAATCGATTTTATTC 58.700 45.455 31.54 0.00 42.43 1.75
238 239 2.293399 AGCCGGCAATCGATTTTATTCC 59.707 45.455 31.54 4.27 42.43 3.01
239 240 2.034053 GCCGGCAATCGATTTTATTCCA 59.966 45.455 24.80 0.00 42.43 3.53
240 241 3.305335 GCCGGCAATCGATTTTATTCCAT 60.305 43.478 24.80 0.00 42.43 3.41
241 242 4.475944 CCGGCAATCGATTTTATTCCATC 58.524 43.478 8.21 0.00 42.43 3.51
242 243 4.023279 CCGGCAATCGATTTTATTCCATCA 60.023 41.667 8.21 0.00 42.43 3.07
243 244 5.335897 CCGGCAATCGATTTTATTCCATCAT 60.336 40.000 8.21 0.00 42.43 2.45
244 245 6.128035 CCGGCAATCGATTTTATTCCATCATA 60.128 38.462 8.21 0.00 42.43 2.15
245 246 6.742718 CGGCAATCGATTTTATTCCATCATAC 59.257 38.462 8.21 0.00 42.43 2.39
246 247 7.361201 CGGCAATCGATTTTATTCCATCATACT 60.361 37.037 8.21 0.00 42.43 2.12
247 248 8.946085 GGCAATCGATTTTATTCCATCATACTA 58.054 33.333 8.21 0.00 0.00 1.82
270 271 9.533831 ACTAATTTCCTGTAAAATGATCCTTGT 57.466 29.630 0.00 0.00 0.00 3.16
273 274 7.831691 TTTCCTGTAAAATGATCCTTGTTCA 57.168 32.000 0.00 0.00 0.00 3.18
274 275 7.831691 TTCCTGTAAAATGATCCTTGTTCAA 57.168 32.000 0.00 0.00 0.00 2.69
275 276 7.452880 TCCTGTAAAATGATCCTTGTTCAAG 57.547 36.000 5.66 5.66 0.00 3.02
276 277 7.004086 TCCTGTAAAATGATCCTTGTTCAAGT 58.996 34.615 10.93 0.00 0.00 3.16
277 278 8.160765 TCCTGTAAAATGATCCTTGTTCAAGTA 58.839 33.333 10.93 0.00 0.00 2.24
278 279 8.454106 CCTGTAAAATGATCCTTGTTCAAGTAG 58.546 37.037 10.93 0.00 0.00 2.57
279 280 7.816640 TGTAAAATGATCCTTGTTCAAGTAGC 58.183 34.615 10.93 0.00 0.00 3.58
280 281 6.899393 AAAATGATCCTTGTTCAAGTAGCA 57.101 33.333 10.93 5.36 0.00 3.49
281 282 6.899393 AAATGATCCTTGTTCAAGTAGCAA 57.101 33.333 10.93 0.00 0.00 3.91
282 283 7.472334 AAATGATCCTTGTTCAAGTAGCAAT 57.528 32.000 10.93 0.00 0.00 3.56
283 284 7.472334 AATGATCCTTGTTCAAGTAGCAATT 57.528 32.000 10.93 3.17 0.00 2.32
284 285 6.899393 TGATCCTTGTTCAAGTAGCAATTT 57.101 33.333 10.93 0.00 0.00 1.82
285 286 6.913170 TGATCCTTGTTCAAGTAGCAATTTC 58.087 36.000 10.93 0.00 0.00 2.17
286 287 6.489700 TGATCCTTGTTCAAGTAGCAATTTCA 59.510 34.615 10.93 0.00 0.00 2.69
287 288 6.899393 TCCTTGTTCAAGTAGCAATTTCAT 57.101 33.333 10.93 0.00 0.00 2.57
288 289 7.288810 TCCTTGTTCAAGTAGCAATTTCATT 57.711 32.000 10.93 0.00 0.00 2.57
289 290 7.370383 TCCTTGTTCAAGTAGCAATTTCATTC 58.630 34.615 10.93 0.00 0.00 2.67
290 291 6.587608 CCTTGTTCAAGTAGCAATTTCATTCC 59.412 38.462 10.93 0.00 0.00 3.01
291 292 6.647334 TGTTCAAGTAGCAATTTCATTCCA 57.353 33.333 0.00 0.00 0.00 3.53
292 293 7.230849 TGTTCAAGTAGCAATTTCATTCCAT 57.769 32.000 0.00 0.00 0.00 3.41
293 294 7.315142 TGTTCAAGTAGCAATTTCATTCCATC 58.685 34.615 0.00 0.00 0.00 3.51
294 295 7.039853 TGTTCAAGTAGCAATTTCATTCCATCA 60.040 33.333 0.00 0.00 0.00 3.07
295 296 7.649533 TCAAGTAGCAATTTCATTCCATCAT 57.350 32.000 0.00 0.00 0.00 2.45
296 297 7.709947 TCAAGTAGCAATTTCATTCCATCATC 58.290 34.615 0.00 0.00 0.00 2.92
297 298 7.339976 TCAAGTAGCAATTTCATTCCATCATCA 59.660 33.333 0.00 0.00 0.00 3.07
298 299 7.834881 AGTAGCAATTTCATTCCATCATCAT 57.165 32.000 0.00 0.00 0.00 2.45
299 300 8.929260 AGTAGCAATTTCATTCCATCATCATA 57.071 30.769 0.00 0.00 0.00 2.15
300 301 8.790718 AGTAGCAATTTCATTCCATCATCATAC 58.209 33.333 0.00 0.00 0.00 2.39
301 302 7.591421 AGCAATTTCATTCCATCATCATACA 57.409 32.000 0.00 0.00 0.00 2.29
302 303 8.014070 AGCAATTTCATTCCATCATCATACAA 57.986 30.769 0.00 0.00 0.00 2.41
303 304 8.141909 AGCAATTTCATTCCATCATCATACAAG 58.858 33.333 0.00 0.00 0.00 3.16
304 305 7.095774 GCAATTTCATTCCATCATCATACAAGC 60.096 37.037 0.00 0.00 0.00 4.01
305 306 7.591421 ATTTCATTCCATCATCATACAAGCA 57.409 32.000 0.00 0.00 0.00 3.91
306 307 7.591421 TTTCATTCCATCATCATACAAGCAT 57.409 32.000 0.00 0.00 0.00 3.79
307 308 6.812879 TCATTCCATCATCATACAAGCATC 57.187 37.500 0.00 0.00 0.00 3.91
308 309 5.410439 TCATTCCATCATCATACAAGCATCG 59.590 40.000 0.00 0.00 0.00 3.84
309 310 4.341366 TCCATCATCATACAAGCATCGT 57.659 40.909 0.00 0.00 0.00 3.73
310 311 4.309933 TCCATCATCATACAAGCATCGTC 58.690 43.478 0.00 0.00 0.00 4.20
311 312 4.039609 TCCATCATCATACAAGCATCGTCT 59.960 41.667 0.00 0.00 0.00 4.18
312 313 4.753610 CCATCATCATACAAGCATCGTCTT 59.246 41.667 0.00 0.00 0.00 3.01
313 314 5.928264 CCATCATCATACAAGCATCGTCTTA 59.072 40.000 0.00 0.00 0.00 2.10
314 315 6.424812 CCATCATCATACAAGCATCGTCTTAA 59.575 38.462 0.00 0.00 0.00 1.85
315 316 7.041848 CCATCATCATACAAGCATCGTCTTAAA 60.042 37.037 0.00 0.00 0.00 1.52
316 317 7.841915 TCATCATACAAGCATCGTCTTAAAA 57.158 32.000 0.00 0.00 0.00 1.52
317 318 8.262715 TCATCATACAAGCATCGTCTTAAAAA 57.737 30.769 0.00 0.00 0.00 1.94
318 319 8.892723 TCATCATACAAGCATCGTCTTAAAAAT 58.107 29.630 0.00 0.00 0.00 1.82
319 320 9.162793 CATCATACAAGCATCGTCTTAAAAATC 57.837 33.333 0.00 0.00 0.00 2.17
320 321 7.398746 TCATACAAGCATCGTCTTAAAAATCG 58.601 34.615 0.00 0.00 0.00 3.34
321 322 5.607119 ACAAGCATCGTCTTAAAAATCGT 57.393 34.783 0.00 0.00 0.00 3.73
322 323 5.618561 ACAAGCATCGTCTTAAAAATCGTC 58.381 37.500 0.00 0.00 0.00 4.20
323 324 4.500703 AGCATCGTCTTAAAAATCGTCG 57.499 40.909 0.00 0.00 0.00 5.12
324 325 3.306166 AGCATCGTCTTAAAAATCGTCGG 59.694 43.478 0.00 0.00 0.00 4.79
325 326 3.305094 GCATCGTCTTAAAAATCGTCGGA 59.695 43.478 0.00 0.00 0.00 4.55
326 327 4.778154 GCATCGTCTTAAAAATCGTCGGAC 60.778 45.833 0.00 0.00 0.00 4.79
327 328 3.244976 TCGTCTTAAAAATCGTCGGACC 58.755 45.455 1.91 0.00 0.00 4.46
328 329 3.057315 TCGTCTTAAAAATCGTCGGACCT 60.057 43.478 1.91 0.00 0.00 3.85
329 330 3.060363 CGTCTTAAAAATCGTCGGACCTG 59.940 47.826 1.91 0.00 0.00 4.00
330 331 3.992427 GTCTTAAAAATCGTCGGACCTGT 59.008 43.478 1.91 0.00 0.00 4.00
331 332 5.163513 GTCTTAAAAATCGTCGGACCTGTA 58.836 41.667 1.91 0.00 0.00 2.74
332 333 5.287992 GTCTTAAAAATCGTCGGACCTGTAG 59.712 44.000 1.91 0.00 0.00 2.74
333 334 2.005971 AAAATCGTCGGACCTGTAGC 57.994 50.000 1.91 0.00 0.00 3.58
334 335 0.892755 AAATCGTCGGACCTGTAGCA 59.107 50.000 1.91 0.00 0.00 3.49
335 336 0.172803 AATCGTCGGACCTGTAGCAC 59.827 55.000 1.91 0.00 0.00 4.40
336 337 0.680280 ATCGTCGGACCTGTAGCACT 60.680 55.000 1.91 0.00 0.00 4.40
337 338 1.154016 CGTCGGACCTGTAGCACTG 60.154 63.158 1.91 0.00 0.00 3.66
338 339 1.446272 GTCGGACCTGTAGCACTGC 60.446 63.158 0.00 0.00 0.00 4.40
339 340 1.606601 TCGGACCTGTAGCACTGCT 60.607 57.895 8.95 8.95 43.41 4.24
340 341 1.153745 CGGACCTGTAGCACTGCTC 60.154 63.158 6.86 0.26 40.44 4.26
341 342 1.219393 GGACCTGTAGCACTGCTCC 59.781 63.158 6.86 0.00 40.44 4.70
342 343 1.219393 GACCTGTAGCACTGCTCCC 59.781 63.158 6.86 0.06 40.44 4.30
343 344 1.536418 ACCTGTAGCACTGCTCCCA 60.536 57.895 6.86 5.04 40.44 4.37
344 345 1.078848 CCTGTAGCACTGCTCCCAC 60.079 63.158 6.86 0.83 40.44 4.61
345 346 1.673477 CTGTAGCACTGCTCCCACA 59.327 57.895 6.86 5.89 40.44 4.17
346 347 0.035317 CTGTAGCACTGCTCCCACAA 59.965 55.000 6.86 0.00 40.44 3.33
347 348 0.035317 TGTAGCACTGCTCCCACAAG 59.965 55.000 6.86 0.00 40.44 3.16
348 349 0.321671 GTAGCACTGCTCCCACAAGA 59.678 55.000 6.86 0.00 40.44 3.02
349 350 1.065854 GTAGCACTGCTCCCACAAGAT 60.066 52.381 6.86 0.00 40.44 2.40
350 351 0.403271 AGCACTGCTCCCACAAGATT 59.597 50.000 0.00 0.00 30.62 2.40
351 352 1.630369 AGCACTGCTCCCACAAGATTA 59.370 47.619 0.00 0.00 30.62 1.75
352 353 1.740025 GCACTGCTCCCACAAGATTAC 59.260 52.381 0.00 0.00 0.00 1.89
353 354 2.616510 GCACTGCTCCCACAAGATTACT 60.617 50.000 0.00 0.00 0.00 2.24
354 355 3.005554 CACTGCTCCCACAAGATTACTG 58.994 50.000 0.00 0.00 0.00 2.74
355 356 2.012673 CTGCTCCCACAAGATTACTGC 58.987 52.381 0.00 0.00 0.00 4.40
356 357 1.340017 TGCTCCCACAAGATTACTGCC 60.340 52.381 0.00 0.00 0.00 4.85
357 358 1.065126 GCTCCCACAAGATTACTGCCT 60.065 52.381 0.00 0.00 0.00 4.75
358 359 2.170607 GCTCCCACAAGATTACTGCCTA 59.829 50.000 0.00 0.00 0.00 3.93
359 360 3.742640 GCTCCCACAAGATTACTGCCTAG 60.743 52.174 0.00 0.00 0.00 3.02
360 361 2.771943 TCCCACAAGATTACTGCCTAGG 59.228 50.000 3.67 3.67 0.00 3.02
361 362 2.771943 CCCACAAGATTACTGCCTAGGA 59.228 50.000 14.75 0.00 0.00 2.94
362 363 3.432326 CCCACAAGATTACTGCCTAGGAC 60.432 52.174 14.75 4.44 0.00 3.85
363 364 3.432326 CCACAAGATTACTGCCTAGGACC 60.432 52.174 14.75 0.00 0.00 4.46
364 365 3.197766 CACAAGATTACTGCCTAGGACCA 59.802 47.826 14.75 0.10 0.00 4.02
365 366 3.197983 ACAAGATTACTGCCTAGGACCAC 59.802 47.826 14.75 0.00 0.00 4.16
366 367 2.032620 AGATTACTGCCTAGGACCACG 58.967 52.381 14.75 0.00 0.00 4.94
367 368 1.068741 GATTACTGCCTAGGACCACGG 59.931 57.143 14.75 1.74 0.00 4.94
368 369 0.251922 TTACTGCCTAGGACCACGGT 60.252 55.000 14.75 8.41 0.00 4.83
369 370 0.625316 TACTGCCTAGGACCACGGTA 59.375 55.000 14.75 7.34 0.00 4.02
370 371 0.032416 ACTGCCTAGGACCACGGTAT 60.032 55.000 14.75 0.00 0.00 2.73
371 372 1.216175 ACTGCCTAGGACCACGGTATA 59.784 52.381 14.75 0.00 0.00 1.47
372 373 2.158355 ACTGCCTAGGACCACGGTATAT 60.158 50.000 14.75 0.00 0.00 0.86
373 374 2.231478 CTGCCTAGGACCACGGTATATG 59.769 54.545 14.75 0.00 0.00 1.78
374 375 2.245582 GCCTAGGACCACGGTATATGT 58.754 52.381 14.75 0.00 0.00 2.29
375 376 2.029290 GCCTAGGACCACGGTATATGTG 60.029 54.545 14.75 2.05 37.09 3.21
386 387 6.371809 CACGGTATATGTGGTAAGCAATTT 57.628 37.500 0.00 0.00 33.69 1.82
387 388 6.427150 CACGGTATATGTGGTAAGCAATTTC 58.573 40.000 0.00 0.00 33.69 2.17
388 389 6.260050 CACGGTATATGTGGTAAGCAATTTCT 59.740 38.462 0.00 0.00 33.69 2.52
389 390 6.260050 ACGGTATATGTGGTAAGCAATTTCTG 59.740 38.462 0.00 0.00 0.00 3.02
390 391 6.481976 CGGTATATGTGGTAAGCAATTTCTGA 59.518 38.462 0.00 0.00 0.00 3.27
391 392 7.011950 CGGTATATGTGGTAAGCAATTTCTGAA 59.988 37.037 0.00 0.00 0.00 3.02
392 393 8.850156 GGTATATGTGGTAAGCAATTTCTGAAT 58.150 33.333 0.00 0.00 0.00 2.57
393 394 9.669353 GTATATGTGGTAAGCAATTTCTGAATG 57.331 33.333 0.00 0.00 0.00 2.67
394 395 5.389859 TGTGGTAAGCAATTTCTGAATGG 57.610 39.130 0.00 0.00 0.00 3.16
395 396 5.076182 TGTGGTAAGCAATTTCTGAATGGA 58.924 37.500 0.00 0.00 0.00 3.41
396 397 5.538053 TGTGGTAAGCAATTTCTGAATGGAA 59.462 36.000 0.00 0.00 0.00 3.53
397 398 6.041409 TGTGGTAAGCAATTTCTGAATGGAAA 59.959 34.615 0.00 0.00 39.16 3.13
398 399 7.099120 GTGGTAAGCAATTTCTGAATGGAAAT 58.901 34.615 0.00 0.00 44.66 2.17
433 434 9.740710 AATGATTTAGGTTGTTAGCTCTACTTT 57.259 29.630 0.00 0.00 33.36 2.66
434 435 9.740710 ATGATTTAGGTTGTTAGCTCTACTTTT 57.259 29.630 0.00 0.00 33.36 2.27
435 436 8.999431 TGATTTAGGTTGTTAGCTCTACTTTTG 58.001 33.333 0.00 0.00 33.36 2.44
436 437 9.216117 GATTTAGGTTGTTAGCTCTACTTTTGA 57.784 33.333 0.00 0.00 33.36 2.69
437 438 8.967664 TTTAGGTTGTTAGCTCTACTTTTGAA 57.032 30.769 0.00 0.00 33.36 2.69
438 439 8.967664 TTAGGTTGTTAGCTCTACTTTTGAAA 57.032 30.769 0.00 0.00 33.36 2.69
439 440 7.875327 AGGTTGTTAGCTCTACTTTTGAAAA 57.125 32.000 0.00 0.00 0.00 2.29
440 441 7.931275 AGGTTGTTAGCTCTACTTTTGAAAAG 58.069 34.615 15.59 15.59 0.00 2.27
441 442 7.556635 AGGTTGTTAGCTCTACTTTTGAAAAGT 59.443 33.333 24.58 24.58 0.00 2.66
442 443 8.833493 GGTTGTTAGCTCTACTTTTGAAAAGTA 58.167 33.333 24.23 24.23 0.00 2.24
501 502 4.388577 AATTACTGCCAAAGAGAAGGGT 57.611 40.909 0.00 0.00 0.00 4.34
576 586 5.185454 GCAAAAATAAAGGGGAAAGGGATG 58.815 41.667 0.00 0.00 0.00 3.51
577 587 5.045942 GCAAAAATAAAGGGGAAAGGGATGA 60.046 40.000 0.00 0.00 0.00 2.92
578 588 6.521598 GCAAAAATAAAGGGGAAAGGGATGAA 60.522 38.462 0.00 0.00 0.00 2.57
586 596 3.452264 GGGGAAAGGGATGAAATGAAAGG 59.548 47.826 0.00 0.00 0.00 3.11
674 685 2.434331 CCCTTCCCTCCAACGCAA 59.566 61.111 0.00 0.00 0.00 4.85
676 687 2.335712 CCTTCCCTCCAACGCAAGC 61.336 63.158 0.00 0.00 45.62 4.01
677 688 2.668212 TTCCCTCCAACGCAAGCG 60.668 61.111 13.50 13.50 46.03 4.68
823 834 0.914902 AGCCACCCTCCTTTACTCCC 60.915 60.000 0.00 0.00 0.00 4.30
936 951 1.006639 GAGACAAGGGAGGAGGAGTCT 59.993 57.143 0.00 0.00 38.89 3.24
939 969 1.199615 CAAGGGAGGAGGAGTCTTCC 58.800 60.000 13.37 13.37 46.27 3.46
1192 1222 1.287041 GACGCCCAAGACCACGTAAC 61.287 60.000 0.00 0.00 39.16 2.50
1203 1233 1.071228 ACCACGTAACTTGTTCTCCCC 59.929 52.381 0.00 0.00 0.00 4.81
1227 1257 3.014110 TCCTCCCTCTCTCACCCTTTATT 59.986 47.826 0.00 0.00 0.00 1.40
1228 1258 3.135530 CCTCCCTCTCTCACCCTTTATTG 59.864 52.174 0.00 0.00 0.00 1.90
1269 1300 6.705825 GCTCTGTTTCTTCTTCTTCTTCTTCT 59.294 38.462 0.00 0.00 0.00 2.85
1270 1301 7.226523 GCTCTGTTTCTTCTTCTTCTTCTTCTT 59.773 37.037 0.00 0.00 0.00 2.52
1271 1302 8.655651 TCTGTTTCTTCTTCTTCTTCTTCTTC 57.344 34.615 0.00 0.00 0.00 2.87
1272 1303 8.482128 TCTGTTTCTTCTTCTTCTTCTTCTTCT 58.518 33.333 0.00 0.00 0.00 2.85
1273 1304 9.108284 CTGTTTCTTCTTCTTCTTCTTCTTCTT 57.892 33.333 0.00 0.00 0.00 2.52
1274 1305 9.103861 TGTTTCTTCTTCTTCTTCTTCTTCTTC 57.896 33.333 0.00 0.00 0.00 2.87
1275 1306 9.325198 GTTTCTTCTTCTTCTTCTTCTTCTTCT 57.675 33.333 0.00 0.00 0.00 2.85
1276 1307 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
1277 1308 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
1316 1347 1.000171 AGCTGCTAACTTTGCCTTTGC 60.000 47.619 0.00 0.00 38.26 3.68
1317 1348 1.000171 GCTGCTAACTTTGCCTTTGCT 60.000 47.619 0.00 0.00 38.71 3.91
1318 1349 2.669364 CTGCTAACTTTGCCTTTGCTG 58.331 47.619 0.00 0.00 38.71 4.41
1319 1350 2.031120 TGCTAACTTTGCCTTTGCTGT 58.969 42.857 0.00 0.00 38.71 4.40
1330 1361 1.002430 CCTTTGCTGTCTGTCAGGCTA 59.998 52.381 5.94 0.00 43.78 3.93
1444 1475 6.012658 TCTTTCAGCACACATCCAATAAAC 57.987 37.500 0.00 0.00 0.00 2.01
1470 1501 1.066286 CAGAGTCTGAAAGCCCTGGAG 60.066 57.143 15.46 0.00 32.44 3.86
1478 1509 2.892852 TGAAAGCCCTGGAGATGTTTTG 59.107 45.455 0.00 0.00 0.00 2.44
1572 1604 2.949447 AGTGTTGTTCCATCCAGCTTT 58.051 42.857 0.00 0.00 0.00 3.51
1573 1605 2.624838 AGTGTTGTTCCATCCAGCTTTG 59.375 45.455 0.00 0.00 0.00 2.77
1575 1607 3.256631 GTGTTGTTCCATCCAGCTTTGAT 59.743 43.478 0.00 0.00 0.00 2.57
1576 1608 3.896888 TGTTGTTCCATCCAGCTTTGATT 59.103 39.130 0.00 0.00 0.00 2.57
1643 1683 1.939974 GAGTATGACTCATTGCGGCA 58.060 50.000 0.00 0.00 44.45 5.69
1650 1690 0.679002 ACTCATTGCGGCAGCTGATT 60.679 50.000 20.43 8.94 45.42 2.57
1651 1691 1.302366 CTCATTGCGGCAGCTGATTA 58.698 50.000 20.43 0.00 45.42 1.75
1703 1743 2.858476 TCCCTGCAGCCCAAGGAA 60.858 61.111 8.66 0.00 31.02 3.36
1730 1770 0.248825 CCATCGAGGAAGCTCTCACG 60.249 60.000 0.00 2.22 41.22 4.35
1780 1820 1.676006 GGTAATGCATGCTGGGTGTAC 59.324 52.381 20.33 10.94 0.00 2.90
1850 1890 2.072298 GTCTGTCTCTGATGTTGGTGC 58.928 52.381 0.00 0.00 0.00 5.01
1905 1945 0.846693 ACAGGAGGAATGTATGGGCC 59.153 55.000 0.00 0.00 0.00 5.80
1922 1962 2.623239 GGGCCCTAAATTTACCACTGCT 60.623 50.000 17.04 0.00 0.00 4.24
1950 1990 3.433306 TTTCCTTCTGTACACCATGGG 57.567 47.619 18.09 7.72 0.00 4.00
1971 2011 7.042797 TGGGAGTTTCTTGAAGAAGAATTTG 57.957 36.000 7.76 0.00 45.60 2.32
1972 2012 5.923114 GGGAGTTTCTTGAAGAAGAATTTGC 59.077 40.000 7.76 0.00 45.60 3.68
1974 2014 6.980397 GGAGTTTCTTGAAGAAGAATTTGCAA 59.020 34.615 7.76 0.00 45.60 4.08
1975 2015 7.492344 GGAGTTTCTTGAAGAAGAATTTGCAAA 59.508 33.333 15.44 15.44 45.60 3.68
1976 2016 8.416485 AGTTTCTTGAAGAAGAATTTGCAAAG 57.584 30.769 18.19 0.00 45.60 2.77
1977 2017 8.253113 AGTTTCTTGAAGAAGAATTTGCAAAGA 58.747 29.630 18.19 1.47 45.60 2.52
1979 2019 8.807667 TTCTTGAAGAAGAATTTGCAAAGATC 57.192 30.769 18.19 17.01 42.23 2.75
1981 2021 8.080417 TCTTGAAGAAGAATTTGCAAAGATCTG 58.920 33.333 23.41 13.31 35.14 2.90
1982 2022 6.154445 TGAAGAAGAATTTGCAAAGATCTGC 58.846 36.000 23.41 22.00 42.95 4.26
1983 2023 5.979288 AGAAGAATTTGCAAAGATCTGCT 57.021 34.783 23.38 23.38 43.07 4.24
1984 2024 6.342338 AGAAGAATTTGCAAAGATCTGCTT 57.658 33.333 23.38 15.10 43.07 3.91
1986 2026 7.215085 AGAAGAATTTGCAAAGATCTGCTTTT 58.785 30.769 23.38 12.68 44.24 2.27
1987 2027 7.713942 AGAAGAATTTGCAAAGATCTGCTTTTT 59.286 29.630 23.38 11.69 44.24 1.94
1988 2028 8.891671 AAGAATTTGCAAAGATCTGCTTTTTA 57.108 26.923 23.41 0.00 44.24 1.52
2128 2168 9.155975 TGCTTTCTTCAGTCTAGAATTAATCAC 57.844 33.333 0.00 0.00 32.09 3.06
2203 2556 4.754411 AATCATATCCTCCAAGGGCATT 57.246 40.909 0.00 0.00 35.59 3.56
2219 2572 5.826643 AGGGCATTATCTTGGTTTCAGTAA 58.173 37.500 0.00 0.00 0.00 2.24
2308 2661 3.688694 ACCAAATAACTCGCCACTACA 57.311 42.857 0.00 0.00 0.00 2.74
2367 2720 2.749621 CTGTCTTCATACCCTGCAAACC 59.250 50.000 0.00 0.00 0.00 3.27
2399 2752 6.353082 CCTCTACCCAGTCCAATTGAATAACT 60.353 42.308 7.12 2.18 0.00 2.24
2469 2823 2.809696 GGTAACCGCACTTTCTGCTTTA 59.190 45.455 0.00 0.00 44.64 1.85
2474 2828 2.744202 CCGCACTTTCTGCTTTACTGAT 59.256 45.455 0.00 0.00 44.64 2.90
2498 2852 5.966742 AGTAACCCAAAAGCTGAGAAATC 57.033 39.130 0.00 0.00 0.00 2.17
2514 2868 3.513515 AGAAATCGCTGAAGTTCTCCTCT 59.486 43.478 4.17 0.00 0.00 3.69
2663 3017 1.946283 GCAGGAAGACAAGTAGGCCAC 60.946 57.143 5.01 0.54 0.00 5.01
2747 3101 5.738783 GCTTCAATTTCCTTGTGCAACCTTA 60.739 40.000 0.00 0.00 36.32 2.69
2748 3102 5.860941 TCAATTTCCTTGTGCAACCTTAA 57.139 34.783 0.00 0.00 36.20 1.85
2808 3162 1.021390 CAGCGCTAGTTGGTTCCCAG 61.021 60.000 10.99 0.00 33.81 4.45
2875 3230 4.910195 TGTATAATTGCTGCCTATCCTGG 58.090 43.478 0.00 0.00 0.00 4.45
2886 3241 2.420129 GCCTATCCTGGTTACAGTGTGG 60.420 54.545 5.88 0.00 43.36 4.17
2891 3246 1.202758 CCTGGTTACAGTGTGGCTTGA 60.203 52.381 5.88 0.00 43.36 3.02
2892 3247 2.571212 CTGGTTACAGTGTGGCTTGAA 58.429 47.619 5.88 0.00 39.92 2.69
2893 3248 3.149196 CTGGTTACAGTGTGGCTTGAAT 58.851 45.455 5.88 0.00 39.92 2.57
2894 3249 2.884012 TGGTTACAGTGTGGCTTGAATG 59.116 45.455 5.88 0.00 0.00 2.67
2950 3305 7.067251 ACAAAGTTTGATGTGAATGCCATTTTT 59.933 29.630 22.23 0.00 0.00 1.94
2952 3307 5.470777 AGTTTGATGTGAATGCCATTTTTGG 59.529 36.000 0.00 0.00 0.00 3.28
2983 3338 6.690194 ATGCCTCATTCAGAAAGTCAATAC 57.310 37.500 0.00 0.00 0.00 1.89
2990 3345 9.770503 CTCATTCAGAAAGTCAATACAATCAAG 57.229 33.333 0.00 0.00 0.00 3.02
2991 3346 9.506018 TCATTCAGAAAGTCAATACAATCAAGA 57.494 29.630 0.00 0.00 0.00 3.02
2992 3347 9.770503 CATTCAGAAAGTCAATACAATCAAGAG 57.229 33.333 0.00 0.00 0.00 2.85
2993 3348 7.912056 TCAGAAAGTCAATACAATCAAGAGG 57.088 36.000 0.00 0.00 0.00 3.69
2994 3349 7.453393 TCAGAAAGTCAATACAATCAAGAGGT 58.547 34.615 0.00 0.00 0.00 3.85
2995 3350 8.593679 TCAGAAAGTCAATACAATCAAGAGGTA 58.406 33.333 0.00 0.00 0.00 3.08
3006 3362 5.702670 ACAATCAAGAGGTAATGACACACAG 59.297 40.000 0.00 0.00 0.00 3.66
3012 3368 2.899900 AGGTAATGACACACAGCTCTGA 59.100 45.455 3.60 0.00 0.00 3.27
3083 3439 2.825532 CCCATTATCCATTAAAGGGCCG 59.174 50.000 0.00 0.00 40.85 6.13
3284 3640 2.582052 AGAACAAACCTTTCGATGGCA 58.418 42.857 5.06 0.00 0.00 4.92
3313 3669 2.872001 GCTCTCGCACGTCGACAG 60.872 66.667 17.16 10.90 43.16 3.51
3581 3937 2.801631 CCTCCTGGCTAGCCCGAAG 61.802 68.421 30.81 18.10 35.87 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.017687 CCATTAGTTCATTTCGCTCATGATGA 60.018 38.462 0.00 0.00 30.63 2.92
1 2 6.140786 CCATTAGTTCATTTCGCTCATGATG 58.859 40.000 0.00 0.00 30.63 3.07
2 3 5.824624 ACCATTAGTTCATTTCGCTCATGAT 59.175 36.000 0.00 0.00 30.63 2.45
3 4 5.185454 ACCATTAGTTCATTTCGCTCATGA 58.815 37.500 0.00 0.00 0.00 3.07
4 5 5.490139 ACCATTAGTTCATTTCGCTCATG 57.510 39.130 0.00 0.00 0.00 3.07
5 6 6.071952 ACAAACCATTAGTTCATTTCGCTCAT 60.072 34.615 0.00 0.00 37.88 2.90
6 7 5.240623 ACAAACCATTAGTTCATTTCGCTCA 59.759 36.000 0.00 0.00 37.88 4.26
7 8 5.569059 CACAAACCATTAGTTCATTTCGCTC 59.431 40.000 0.00 0.00 37.88 5.03
8 9 5.460646 CACAAACCATTAGTTCATTTCGCT 58.539 37.500 0.00 0.00 37.88 4.93
9 10 4.089923 GCACAAACCATTAGTTCATTTCGC 59.910 41.667 0.00 0.00 37.88 4.70
10 11 5.460646 AGCACAAACCATTAGTTCATTTCG 58.539 37.500 0.00 0.00 37.88 3.46
11 12 8.810652 TTTAGCACAAACCATTAGTTCATTTC 57.189 30.769 0.00 0.00 37.88 2.17
12 13 9.777297 ATTTTAGCACAAACCATTAGTTCATTT 57.223 25.926 0.00 0.00 37.88 2.32
13 14 9.423061 GATTTTAGCACAAACCATTAGTTCATT 57.577 29.630 0.00 0.00 37.88 2.57
14 15 8.806146 AGATTTTAGCACAAACCATTAGTTCAT 58.194 29.630 0.00 0.00 37.88 2.57
15 16 8.081633 CAGATTTTAGCACAAACCATTAGTTCA 58.918 33.333 0.00 0.00 37.88 3.18
16 17 8.296713 TCAGATTTTAGCACAAACCATTAGTTC 58.703 33.333 0.00 0.00 37.88 3.01
17 18 8.177119 TCAGATTTTAGCACAAACCATTAGTT 57.823 30.769 0.00 0.00 41.81 2.24
18 19 7.759489 TCAGATTTTAGCACAAACCATTAGT 57.241 32.000 0.00 0.00 0.00 2.24
19 20 9.079833 CAATCAGATTTTAGCACAAACCATTAG 57.920 33.333 0.00 0.00 0.00 1.73
20 21 8.034215 CCAATCAGATTTTAGCACAAACCATTA 58.966 33.333 0.00 0.00 0.00 1.90
21 22 6.875195 CCAATCAGATTTTAGCACAAACCATT 59.125 34.615 0.00 0.00 0.00 3.16
22 23 6.211184 TCCAATCAGATTTTAGCACAAACCAT 59.789 34.615 0.00 0.00 0.00 3.55
23 24 5.538053 TCCAATCAGATTTTAGCACAAACCA 59.462 36.000 0.00 0.00 0.00 3.67
24 25 5.863935 GTCCAATCAGATTTTAGCACAAACC 59.136 40.000 0.00 0.00 0.00 3.27
25 26 6.446318 TGTCCAATCAGATTTTAGCACAAAC 58.554 36.000 0.00 0.00 0.00 2.93
26 27 6.647334 TGTCCAATCAGATTTTAGCACAAA 57.353 33.333 0.00 0.00 0.00 2.83
27 28 6.489700 TCTTGTCCAATCAGATTTTAGCACAA 59.510 34.615 0.00 0.00 0.00 3.33
28 29 6.003326 TCTTGTCCAATCAGATTTTAGCACA 58.997 36.000 0.00 0.00 0.00 4.57
29 30 6.500684 TCTTGTCCAATCAGATTTTAGCAC 57.499 37.500 0.00 0.00 0.00 4.40
30 31 5.124457 GCTCTTGTCCAATCAGATTTTAGCA 59.876 40.000 0.00 0.00 0.00 3.49
31 32 5.124457 TGCTCTTGTCCAATCAGATTTTAGC 59.876 40.000 0.00 0.00 0.00 3.09
32 33 6.748333 TGCTCTTGTCCAATCAGATTTTAG 57.252 37.500 0.00 0.00 0.00 1.85
33 34 7.523293 TTTGCTCTTGTCCAATCAGATTTTA 57.477 32.000 0.00 0.00 0.00 1.52
34 35 6.409524 TTTGCTCTTGTCCAATCAGATTTT 57.590 33.333 0.00 0.00 0.00 1.82
35 36 6.409524 TTTTGCTCTTGTCCAATCAGATTT 57.590 33.333 0.00 0.00 0.00 2.17
36 37 6.409524 TTTTTGCTCTTGTCCAATCAGATT 57.590 33.333 0.00 0.00 0.00 2.40
58 59 1.375551 ACAAGAGTCCGTGCGTTTTT 58.624 45.000 0.00 0.00 0.00 1.94
59 60 1.329599 GAACAAGAGTCCGTGCGTTTT 59.670 47.619 0.00 0.00 0.00 2.43
60 61 0.935196 GAACAAGAGTCCGTGCGTTT 59.065 50.000 0.00 0.00 0.00 3.60
61 62 1.213094 CGAACAAGAGTCCGTGCGTT 61.213 55.000 3.05 0.00 0.00 4.84
62 63 1.660575 CGAACAAGAGTCCGTGCGT 60.661 57.895 3.05 0.00 0.00 5.24
63 64 2.372690 CCGAACAAGAGTCCGTGCG 61.373 63.158 4.07 4.07 0.00 5.34
64 65 1.282930 GACCGAACAAGAGTCCGTGC 61.283 60.000 0.00 0.00 0.00 5.34
65 66 0.031585 TGACCGAACAAGAGTCCGTG 59.968 55.000 0.00 0.00 0.00 4.94
66 67 0.966920 ATGACCGAACAAGAGTCCGT 59.033 50.000 0.00 0.00 0.00 4.69
67 68 1.993370 GAATGACCGAACAAGAGTCCG 59.007 52.381 0.00 0.00 0.00 4.79
68 69 2.347731 GGAATGACCGAACAAGAGTCC 58.652 52.381 0.00 0.00 0.00 3.85
89 90 0.307760 CTGCCCTTGACACGTTTGAC 59.692 55.000 0.00 0.00 0.00 3.18
90 91 1.444119 GCTGCCCTTGACACGTTTGA 61.444 55.000 0.00 0.00 0.00 2.69
91 92 1.008538 GCTGCCCTTGACACGTTTG 60.009 57.895 0.00 0.00 0.00 2.93
92 93 2.542907 CGCTGCCCTTGACACGTTT 61.543 57.895 0.00 0.00 0.00 3.60
93 94 2.972505 CGCTGCCCTTGACACGTT 60.973 61.111 0.00 0.00 0.00 3.99
144 145 4.139420 CTTGCGGCAGCTCGTTCG 62.139 66.667 10.92 0.00 45.42 3.95
145 146 3.016474 GACTTGCGGCAGCTCGTTC 62.016 63.158 10.92 0.00 45.42 3.95
146 147 3.044305 GACTTGCGGCAGCTCGTT 61.044 61.111 10.92 0.00 45.42 3.85
147 148 4.299547 TGACTTGCGGCAGCTCGT 62.300 61.111 10.92 6.84 45.42 4.18
148 149 3.782244 GTGACTTGCGGCAGCTCG 61.782 66.667 10.92 3.38 45.42 5.03
149 150 2.666190 TGTGACTTGCGGCAGCTC 60.666 61.111 10.92 2.38 45.42 4.09
150 151 2.974698 GTGTGACTTGCGGCAGCT 60.975 61.111 10.92 0.00 45.42 4.24
151 152 3.279116 TGTGTGACTTGCGGCAGC 61.279 61.111 1.67 0.31 45.41 5.25
152 153 2.633657 GTGTGTGACTTGCGGCAG 59.366 61.111 1.67 0.12 0.00 4.85
153 154 3.268603 CGTGTGTGACTTGCGGCA 61.269 61.111 0.00 0.00 0.00 5.69
154 155 3.223435 GACGTGTGTGACTTGCGGC 62.223 63.158 0.00 0.00 0.00 6.53
155 156 2.927618 CGACGTGTGTGACTTGCGG 61.928 63.158 0.00 0.00 0.00 5.69
156 157 1.942223 TCGACGTGTGTGACTTGCG 60.942 57.895 0.00 0.00 0.00 4.85
157 158 1.558383 GTCGACGTGTGTGACTTGC 59.442 57.895 0.00 0.00 0.00 4.01
158 159 1.537289 CGGTCGACGTGTGTGACTTG 61.537 60.000 9.92 0.00 37.93 3.16
159 160 1.298863 CGGTCGACGTGTGTGACTT 60.299 57.895 9.92 0.00 37.93 3.01
160 161 2.330393 CGGTCGACGTGTGTGACT 59.670 61.111 9.92 0.00 37.93 3.41
161 162 3.392440 GCGGTCGACGTGTGTGAC 61.392 66.667 9.92 0.00 46.52 3.67
162 163 4.634133 GGCGGTCGACGTGTGTGA 62.634 66.667 9.92 0.00 46.52 3.58
171 172 4.492160 GCAGATGTCGGCGGTCGA 62.492 66.667 7.21 0.00 46.77 4.20
172 173 4.794439 TGCAGATGTCGGCGGTCG 62.794 66.667 7.21 0.00 39.95 4.79
173 174 2.202932 ATGCAGATGTCGGCGGTC 60.203 61.111 7.21 3.23 39.95 4.79
174 175 2.512286 CATGCAGATGTCGGCGGT 60.512 61.111 7.21 0.00 39.95 5.68
175 176 3.274586 CCATGCAGATGTCGGCGG 61.275 66.667 7.21 0.00 39.95 6.13
176 177 3.274586 CCCATGCAGATGTCGGCG 61.275 66.667 0.00 0.00 39.95 6.46
177 178 3.589881 GCCCATGCAGATGTCGGC 61.590 66.667 0.00 0.00 37.47 5.54
178 179 3.274586 CGCCCATGCAGATGTCGG 61.275 66.667 0.00 0.00 37.32 4.79
179 180 3.274586 CCGCCCATGCAGATGTCG 61.275 66.667 0.00 0.00 37.32 4.35
180 181 1.031571 TTTCCGCCCATGCAGATGTC 61.032 55.000 0.00 0.00 37.32 3.06
181 182 1.001020 TTTCCGCCCATGCAGATGT 60.001 52.632 0.00 0.00 37.32 3.06
182 183 1.731700 CTTTCCGCCCATGCAGATG 59.268 57.895 0.00 0.00 37.32 2.90
183 184 2.123428 GCTTTCCGCCCATGCAGAT 61.123 57.895 0.00 0.00 37.32 2.90
184 185 2.751436 GCTTTCCGCCCATGCAGA 60.751 61.111 0.00 0.00 37.32 4.26
185 186 2.753043 AGCTTTCCGCCCATGCAG 60.753 61.111 0.00 0.00 40.39 4.41
186 187 3.063704 CAGCTTTCCGCCCATGCA 61.064 61.111 0.00 0.00 40.39 3.96
187 188 3.056313 GACAGCTTTCCGCCCATGC 62.056 63.158 0.00 0.00 40.39 4.06
188 189 2.409870 GGACAGCTTTCCGCCCATG 61.410 63.158 2.46 0.00 40.39 3.66
189 190 2.044946 GGACAGCTTTCCGCCCAT 60.045 61.111 2.46 0.00 40.39 4.00
195 196 1.657751 GCCATTCCGGACAGCTTTCC 61.658 60.000 1.83 9.00 36.56 3.13
196 197 1.657751 GGCCATTCCGGACAGCTTTC 61.658 60.000 1.83 0.00 45.64 2.62
197 198 1.678970 GGCCATTCCGGACAGCTTT 60.679 57.895 1.83 0.00 45.64 3.51
198 199 2.044946 GGCCATTCCGGACAGCTT 60.045 61.111 1.83 0.00 45.64 3.74
214 215 1.666209 AAAATCGATTGCCGGCTGGG 61.666 55.000 29.70 14.26 39.14 4.45
215 216 1.021202 TAAAATCGATTGCCGGCTGG 58.979 50.000 29.70 7.41 39.14 4.85
216 217 3.300009 GAATAAAATCGATTGCCGGCTG 58.700 45.455 29.70 14.86 39.14 4.85
217 218 2.293399 GGAATAAAATCGATTGCCGGCT 59.707 45.455 29.70 8.29 39.14 5.52
218 219 2.034053 TGGAATAAAATCGATTGCCGGC 59.966 45.455 22.73 22.73 39.14 6.13
219 220 3.980646 TGGAATAAAATCGATTGCCGG 57.019 42.857 12.25 0.00 39.14 6.13
220 221 5.107109 TGATGGAATAAAATCGATTGCCG 57.893 39.130 12.25 0.00 40.25 5.69
221 222 7.820648 AGTATGATGGAATAAAATCGATTGCC 58.179 34.615 12.25 8.99 0.00 4.52
244 245 9.533831 ACAAGGATCATTTTACAGGAAATTAGT 57.466 29.630 0.00 0.00 0.00 2.24
247 248 8.869109 TGAACAAGGATCATTTTACAGGAAATT 58.131 29.630 0.00 0.00 0.00 1.82
248 249 8.421249 TGAACAAGGATCATTTTACAGGAAAT 57.579 30.769 0.00 0.00 0.00 2.17
249 250 7.831691 TGAACAAGGATCATTTTACAGGAAA 57.168 32.000 0.00 0.00 0.00 3.13
250 251 7.505585 ACTTGAACAAGGATCATTTTACAGGAA 59.494 33.333 17.05 0.00 42.53 3.36
251 252 7.004086 ACTTGAACAAGGATCATTTTACAGGA 58.996 34.615 17.05 0.00 42.53 3.86
252 253 7.219484 ACTTGAACAAGGATCATTTTACAGG 57.781 36.000 17.05 0.00 42.53 4.00
253 254 7.965107 GCTACTTGAACAAGGATCATTTTACAG 59.035 37.037 17.05 0.00 42.53 2.74
254 255 7.446931 TGCTACTTGAACAAGGATCATTTTACA 59.553 33.333 17.05 0.00 42.53 2.41
255 256 7.816640 TGCTACTTGAACAAGGATCATTTTAC 58.183 34.615 17.05 0.00 42.53 2.01
256 257 7.994425 TGCTACTTGAACAAGGATCATTTTA 57.006 32.000 17.05 0.01 42.53 1.52
257 258 6.899393 TGCTACTTGAACAAGGATCATTTT 57.101 33.333 17.05 0.00 42.53 1.82
258 259 6.899393 TTGCTACTTGAACAAGGATCATTT 57.101 33.333 17.05 0.00 42.53 2.32
259 260 7.472334 AATTGCTACTTGAACAAGGATCATT 57.528 32.000 17.05 6.01 42.53 2.57
260 261 7.177216 TGAAATTGCTACTTGAACAAGGATCAT 59.823 33.333 17.05 0.00 42.53 2.45
261 262 6.489700 TGAAATTGCTACTTGAACAAGGATCA 59.510 34.615 17.05 8.95 42.53 2.92
262 263 6.913170 TGAAATTGCTACTTGAACAAGGATC 58.087 36.000 17.05 6.59 42.53 3.36
263 264 6.899393 TGAAATTGCTACTTGAACAAGGAT 57.101 33.333 17.05 2.05 42.53 3.24
264 265 6.899393 ATGAAATTGCTACTTGAACAAGGA 57.101 33.333 17.05 9.09 42.53 3.36
265 266 6.587608 GGAATGAAATTGCTACTTGAACAAGG 59.412 38.462 17.05 3.62 41.91 3.61
266 267 7.147312 TGGAATGAAATTGCTACTTGAACAAG 58.853 34.615 12.22 12.22 45.77 3.16
267 268 7.048629 TGGAATGAAATTGCTACTTGAACAA 57.951 32.000 0.00 0.00 45.77 2.83
268 269 6.647334 TGGAATGAAATTGCTACTTGAACA 57.353 33.333 0.00 0.00 45.77 3.18
269 270 7.315142 TGATGGAATGAAATTGCTACTTGAAC 58.685 34.615 0.00 0.00 45.77 3.18
270 271 7.465353 TGATGGAATGAAATTGCTACTTGAA 57.535 32.000 0.00 0.00 45.77 2.69
271 272 7.339976 TGATGATGGAATGAAATTGCTACTTGA 59.660 33.333 0.00 0.00 45.77 3.02
272 273 7.485810 TGATGATGGAATGAAATTGCTACTTG 58.514 34.615 0.00 0.00 45.77 3.16
273 274 7.649533 TGATGATGGAATGAAATTGCTACTT 57.350 32.000 0.00 0.00 45.77 2.24
274 275 7.834881 ATGATGATGGAATGAAATTGCTACT 57.165 32.000 0.00 0.00 45.77 2.57
275 276 8.570488 TGTATGATGATGGAATGAAATTGCTAC 58.430 33.333 0.00 0.00 45.77 3.58
276 277 8.694581 TGTATGATGATGGAATGAAATTGCTA 57.305 30.769 0.00 0.00 45.77 3.49
277 278 7.591421 TGTATGATGATGGAATGAAATTGCT 57.409 32.000 0.00 0.00 45.77 3.91
278 279 7.095774 GCTTGTATGATGATGGAATGAAATTGC 60.096 37.037 0.00 0.00 45.78 3.56
279 280 7.923878 TGCTTGTATGATGATGGAATGAAATTG 59.076 33.333 0.00 0.00 36.07 2.32
280 281 8.014070 TGCTTGTATGATGATGGAATGAAATT 57.986 30.769 0.00 0.00 40.93 1.82
281 282 7.591421 TGCTTGTATGATGATGGAATGAAAT 57.409 32.000 0.00 0.00 0.00 2.17
282 283 7.520937 CGATGCTTGTATGATGATGGAATGAAA 60.521 37.037 0.00 0.00 0.00 2.69
283 284 6.072893 CGATGCTTGTATGATGATGGAATGAA 60.073 38.462 0.00 0.00 0.00 2.57
284 285 5.410439 CGATGCTTGTATGATGATGGAATGA 59.590 40.000 0.00 0.00 0.00 2.57
285 286 5.180680 ACGATGCTTGTATGATGATGGAATG 59.819 40.000 0.00 0.00 0.00 2.67
286 287 5.311265 ACGATGCTTGTATGATGATGGAAT 58.689 37.500 0.00 0.00 0.00 3.01
287 288 4.707105 ACGATGCTTGTATGATGATGGAA 58.293 39.130 0.00 0.00 0.00 3.53
288 289 4.039609 AGACGATGCTTGTATGATGATGGA 59.960 41.667 0.00 0.00 0.00 3.41
289 290 4.313282 AGACGATGCTTGTATGATGATGG 58.687 43.478 0.00 0.00 0.00 3.51
290 291 5.919272 AAGACGATGCTTGTATGATGATG 57.081 39.130 0.00 0.00 0.00 3.07
291 292 8.437360 TTTTAAGACGATGCTTGTATGATGAT 57.563 30.769 0.00 0.00 0.00 2.45
292 293 7.841915 TTTTAAGACGATGCTTGTATGATGA 57.158 32.000 0.00 0.00 0.00 2.92
293 294 9.162793 GATTTTTAAGACGATGCTTGTATGATG 57.837 33.333 0.00 0.00 0.00 3.07
294 295 8.064222 CGATTTTTAAGACGATGCTTGTATGAT 58.936 33.333 0.00 0.00 0.00 2.45
295 296 7.064134 ACGATTTTTAAGACGATGCTTGTATGA 59.936 33.333 0.00 0.00 0.00 2.15
296 297 7.180079 ACGATTTTTAAGACGATGCTTGTATG 58.820 34.615 0.00 0.00 0.00 2.39
297 298 7.303634 ACGATTTTTAAGACGATGCTTGTAT 57.696 32.000 0.00 0.00 0.00 2.29
298 299 6.453265 CGACGATTTTTAAGACGATGCTTGTA 60.453 38.462 0.00 0.00 0.00 2.41
299 300 5.607119 ACGATTTTTAAGACGATGCTTGT 57.393 34.783 0.00 0.00 0.00 3.16
300 301 4.719164 CGACGATTTTTAAGACGATGCTTG 59.281 41.667 0.00 0.00 0.00 4.01
301 302 4.201685 CCGACGATTTTTAAGACGATGCTT 60.202 41.667 0.00 0.00 0.00 3.91
302 303 3.306166 CCGACGATTTTTAAGACGATGCT 59.694 43.478 0.00 0.00 0.00 3.79
303 304 3.305094 TCCGACGATTTTTAAGACGATGC 59.695 43.478 0.00 0.00 0.00 3.91
304 305 4.259690 GGTCCGACGATTTTTAAGACGATG 60.260 45.833 0.00 0.00 0.00 3.84
305 306 3.861689 GGTCCGACGATTTTTAAGACGAT 59.138 43.478 0.00 0.00 0.00 3.73
306 307 3.057315 AGGTCCGACGATTTTTAAGACGA 60.057 43.478 0.00 0.00 0.00 4.20
307 308 3.060363 CAGGTCCGACGATTTTTAAGACG 59.940 47.826 0.00 0.00 0.00 4.18
308 309 3.992427 ACAGGTCCGACGATTTTTAAGAC 59.008 43.478 0.00 0.00 0.00 3.01
309 310 4.261578 ACAGGTCCGACGATTTTTAAGA 57.738 40.909 0.00 0.00 0.00 2.10
310 311 4.032558 GCTACAGGTCCGACGATTTTTAAG 59.967 45.833 0.00 0.00 0.00 1.85
311 312 3.928375 GCTACAGGTCCGACGATTTTTAA 59.072 43.478 0.00 0.00 0.00 1.52
312 313 3.056678 TGCTACAGGTCCGACGATTTTTA 60.057 43.478 0.00 0.00 0.00 1.52
313 314 2.289195 TGCTACAGGTCCGACGATTTTT 60.289 45.455 0.00 0.00 0.00 1.94
314 315 1.274167 TGCTACAGGTCCGACGATTTT 59.726 47.619 0.00 0.00 0.00 1.82
315 316 0.892755 TGCTACAGGTCCGACGATTT 59.107 50.000 0.00 0.00 0.00 2.17
316 317 0.172803 GTGCTACAGGTCCGACGATT 59.827 55.000 0.00 0.00 0.00 3.34
317 318 0.680280 AGTGCTACAGGTCCGACGAT 60.680 55.000 0.00 0.00 0.00 3.73
318 319 1.303074 AGTGCTACAGGTCCGACGA 60.303 57.895 0.00 0.00 0.00 4.20
319 320 1.154016 CAGTGCTACAGGTCCGACG 60.154 63.158 0.00 0.00 0.00 5.12
320 321 1.446272 GCAGTGCTACAGGTCCGAC 60.446 63.158 8.18 0.00 0.00 4.79
321 322 1.595993 GAGCAGTGCTACAGGTCCGA 61.596 60.000 19.77 0.00 39.88 4.55
322 323 1.153745 GAGCAGTGCTACAGGTCCG 60.154 63.158 19.77 0.00 39.88 4.79
323 324 1.219393 GGAGCAGTGCTACAGGTCC 59.781 63.158 23.01 12.62 43.26 4.46
324 325 1.219393 GGGAGCAGTGCTACAGGTC 59.781 63.158 28.39 10.35 42.18 3.85
325 326 1.536418 TGGGAGCAGTGCTACAGGT 60.536 57.895 28.39 0.00 42.18 4.00
326 327 1.078848 GTGGGAGCAGTGCTACAGG 60.079 63.158 28.39 0.00 42.18 4.00
327 328 0.035317 TTGTGGGAGCAGTGCTACAG 59.965 55.000 28.39 0.00 42.18 2.74
328 329 0.035317 CTTGTGGGAGCAGTGCTACA 59.965 55.000 28.39 20.82 42.18 2.74
329 330 0.321671 TCTTGTGGGAGCAGTGCTAC 59.678 55.000 19.87 19.87 39.88 3.58
330 331 1.279496 ATCTTGTGGGAGCAGTGCTA 58.721 50.000 19.77 0.00 39.88 3.49
331 332 0.403271 AATCTTGTGGGAGCAGTGCT 59.597 50.000 19.86 19.86 43.88 4.40
332 333 1.740025 GTAATCTTGTGGGAGCAGTGC 59.260 52.381 7.13 7.13 0.00 4.40
333 334 3.005554 CAGTAATCTTGTGGGAGCAGTG 58.994 50.000 0.00 0.00 0.00 3.66
334 335 2.616510 GCAGTAATCTTGTGGGAGCAGT 60.617 50.000 0.00 0.00 0.00 4.40
335 336 2.012673 GCAGTAATCTTGTGGGAGCAG 58.987 52.381 0.00 0.00 0.00 4.24
336 337 1.340017 GGCAGTAATCTTGTGGGAGCA 60.340 52.381 0.00 0.00 0.00 4.26
337 338 1.065126 AGGCAGTAATCTTGTGGGAGC 60.065 52.381 0.00 0.00 0.00 4.70
338 339 3.181461 CCTAGGCAGTAATCTTGTGGGAG 60.181 52.174 0.00 0.00 0.00 4.30
339 340 2.771943 CCTAGGCAGTAATCTTGTGGGA 59.228 50.000 0.00 0.00 0.00 4.37
340 341 2.771943 TCCTAGGCAGTAATCTTGTGGG 59.228 50.000 2.96 0.00 0.00 4.61
341 342 3.432326 GGTCCTAGGCAGTAATCTTGTGG 60.432 52.174 2.96 0.00 0.00 4.17
342 343 3.197766 TGGTCCTAGGCAGTAATCTTGTG 59.802 47.826 2.96 0.00 0.00 3.33
343 344 3.197983 GTGGTCCTAGGCAGTAATCTTGT 59.802 47.826 2.96 0.00 0.00 3.16
344 345 3.738281 CGTGGTCCTAGGCAGTAATCTTG 60.738 52.174 2.96 0.00 0.00 3.02
345 346 2.431057 CGTGGTCCTAGGCAGTAATCTT 59.569 50.000 2.96 0.00 0.00 2.40
346 347 2.032620 CGTGGTCCTAGGCAGTAATCT 58.967 52.381 2.96 0.00 0.00 2.40
347 348 1.068741 CCGTGGTCCTAGGCAGTAATC 59.931 57.143 2.96 0.00 0.00 1.75
348 349 1.120530 CCGTGGTCCTAGGCAGTAAT 58.879 55.000 2.96 0.00 0.00 1.89
349 350 0.251922 ACCGTGGTCCTAGGCAGTAA 60.252 55.000 2.96 0.00 0.00 2.24
350 351 0.625316 TACCGTGGTCCTAGGCAGTA 59.375 55.000 2.96 0.00 0.00 2.74
351 352 0.032416 ATACCGTGGTCCTAGGCAGT 60.032 55.000 2.96 0.00 0.00 4.40
352 353 1.991121 TATACCGTGGTCCTAGGCAG 58.009 55.000 2.96 0.00 0.00 4.85
353 354 2.244695 CATATACCGTGGTCCTAGGCA 58.755 52.381 2.96 0.00 0.00 4.75
354 355 2.029290 CACATATACCGTGGTCCTAGGC 60.029 54.545 2.96 0.00 0.00 3.93
355 356 3.936372 CACATATACCGTGGTCCTAGG 57.064 52.381 0.82 0.82 0.00 3.02
363 364 6.260050 AGAAATTGCTTACCACATATACCGTG 59.740 38.462 0.00 0.00 0.00 4.94
364 365 6.260050 CAGAAATTGCTTACCACATATACCGT 59.740 38.462 0.00 0.00 0.00 4.83
365 366 6.481976 TCAGAAATTGCTTACCACATATACCG 59.518 38.462 0.00 0.00 0.00 4.02
366 367 7.801716 TCAGAAATTGCTTACCACATATACC 57.198 36.000 0.00 0.00 0.00 2.73
367 368 9.669353 CATTCAGAAATTGCTTACCACATATAC 57.331 33.333 0.00 0.00 0.00 1.47
368 369 8.849168 CCATTCAGAAATTGCTTACCACATATA 58.151 33.333 0.00 0.00 0.00 0.86
369 370 7.560991 TCCATTCAGAAATTGCTTACCACATAT 59.439 33.333 0.00 0.00 0.00 1.78
370 371 6.889177 TCCATTCAGAAATTGCTTACCACATA 59.111 34.615 0.00 0.00 0.00 2.29
371 372 5.716228 TCCATTCAGAAATTGCTTACCACAT 59.284 36.000 0.00 0.00 0.00 3.21
372 373 5.076182 TCCATTCAGAAATTGCTTACCACA 58.924 37.500 0.00 0.00 0.00 4.17
373 374 5.643379 TCCATTCAGAAATTGCTTACCAC 57.357 39.130 0.00 0.00 0.00 4.16
374 375 6.662865 TTTCCATTCAGAAATTGCTTACCA 57.337 33.333 0.00 0.00 30.87 3.25
407 408 9.740710 AAAGTAGAGCTAACAACCTAAATCATT 57.259 29.630 0.00 0.00 0.00 2.57
408 409 9.740710 AAAAGTAGAGCTAACAACCTAAATCAT 57.259 29.630 0.00 0.00 0.00 2.45
409 410 8.999431 CAAAAGTAGAGCTAACAACCTAAATCA 58.001 33.333 0.00 0.00 0.00 2.57
410 411 9.216117 TCAAAAGTAGAGCTAACAACCTAAATC 57.784 33.333 0.00 0.00 0.00 2.17
411 412 9.569122 TTCAAAAGTAGAGCTAACAACCTAAAT 57.431 29.630 0.00 0.00 0.00 1.40
412 413 8.967664 TTCAAAAGTAGAGCTAACAACCTAAA 57.032 30.769 0.00 0.00 0.00 1.85
413 414 8.967664 TTTCAAAAGTAGAGCTAACAACCTAA 57.032 30.769 0.00 0.00 0.00 2.69
414 415 8.967664 TTTTCAAAAGTAGAGCTAACAACCTA 57.032 30.769 0.00 0.00 0.00 3.08
415 416 7.556635 ACTTTTCAAAAGTAGAGCTAACAACCT 59.443 33.333 14.11 0.00 0.00 3.50
416 417 7.704271 ACTTTTCAAAAGTAGAGCTAACAACC 58.296 34.615 14.11 0.00 0.00 3.77
481 482 5.514500 TTACCCTTCTCTTTGGCAGTAAT 57.486 39.130 0.00 0.00 0.00 1.89
492 493 4.504382 AGACTCCCTTTTTACCCTTCTCT 58.496 43.478 0.00 0.00 0.00 3.10
501 502 7.695055 TGGTTCATTCATAGACTCCCTTTTTA 58.305 34.615 0.00 0.00 0.00 1.52
534 544 2.428085 GGGGAGCGTCCTCTCTTCC 61.428 68.421 4.41 0.00 38.69 3.46
601 611 4.277476 TCTCCCATGTCTCTCTCTCTTTC 58.723 47.826 0.00 0.00 0.00 2.62
604 614 2.423373 GCTCTCCCATGTCTCTCTCTCT 60.423 54.545 0.00 0.00 0.00 3.10
605 615 1.956477 GCTCTCCCATGTCTCTCTCTC 59.044 57.143 0.00 0.00 0.00 3.20
606 616 1.750332 CGCTCTCCCATGTCTCTCTCT 60.750 57.143 0.00 0.00 0.00 3.10
641 652 2.513897 GGGGCTCCCGTTTGATCG 60.514 66.667 0.00 0.00 36.85 3.69
659 670 2.680913 CGCTTGCGTTGGAGGGAAG 61.681 63.158 6.86 0.00 35.07 3.46
676 687 4.504916 CTGACCCTGGCTCGCTCG 62.505 72.222 0.00 0.00 0.00 5.03
677 688 4.828925 GCTGACCCTGGCTCGCTC 62.829 72.222 0.00 0.00 0.00 5.03
837 848 4.557605 GCGTGAATGCCATGGCCG 62.558 66.667 33.44 27.62 41.09 6.13
899 913 2.357517 CTGTGGAGTGTGGACGGC 60.358 66.667 0.00 0.00 0.00 5.68
900 914 1.179174 TCTCTGTGGAGTGTGGACGG 61.179 60.000 0.00 0.00 40.29 4.79
936 951 2.852075 AGCACCCAAGACCCGGAA 60.852 61.111 0.73 0.00 0.00 4.30
939 969 3.322466 AGGAGCACCCAAGACCCG 61.322 66.667 0.00 0.00 37.41 5.28
1192 1222 0.621082 GGGAGGAAGGGGAGAACAAG 59.379 60.000 0.00 0.00 0.00 3.16
1203 1233 0.338120 AGGGTGAGAGAGGGAGGAAG 59.662 60.000 0.00 0.00 0.00 3.46
1227 1257 1.002134 GCCCTTGGCTAGAAGCACA 60.002 57.895 0.00 0.00 46.69 4.57
1228 1258 3.911137 GCCCTTGGCTAGAAGCAC 58.089 61.111 0.00 0.00 46.69 4.40
1269 1300 5.008316 GTGACCGGCTTAAAAAGAAGAAGAA 59.992 40.000 0.00 0.00 0.00 2.52
1270 1301 4.514066 GTGACCGGCTTAAAAAGAAGAAGA 59.486 41.667 0.00 0.00 0.00 2.87
1271 1302 4.610680 CGTGACCGGCTTAAAAAGAAGAAG 60.611 45.833 0.00 0.00 0.00 2.85
1272 1303 3.249080 CGTGACCGGCTTAAAAAGAAGAA 59.751 43.478 0.00 0.00 0.00 2.52
1273 1304 2.803956 CGTGACCGGCTTAAAAAGAAGA 59.196 45.455 0.00 0.00 0.00 2.87
1274 1305 2.803956 TCGTGACCGGCTTAAAAAGAAG 59.196 45.455 0.00 0.00 33.95 2.85
1275 1306 2.836262 TCGTGACCGGCTTAAAAAGAA 58.164 42.857 0.00 0.00 33.95 2.52
1276 1307 2.529780 TCGTGACCGGCTTAAAAAGA 57.470 45.000 0.00 0.00 33.95 2.52
1277 1308 2.664698 GCTTCGTGACCGGCTTAAAAAG 60.665 50.000 0.00 0.00 33.95 2.27
1285 1316 3.642778 TAGCAGCTTCGTGACCGGC 62.643 63.158 0.00 0.00 33.95 6.13
1316 1347 0.453793 CTCGGTAGCCTGACAGACAG 59.546 60.000 3.32 0.00 45.36 3.51
1317 1348 0.965866 CCTCGGTAGCCTGACAGACA 60.966 60.000 3.32 0.00 0.00 3.41
1318 1349 0.680280 TCCTCGGTAGCCTGACAGAC 60.680 60.000 3.32 0.00 0.00 3.51
1319 1350 0.259065 ATCCTCGGTAGCCTGACAGA 59.741 55.000 3.32 0.00 0.00 3.41
1330 1361 2.239681 ACTTCTCCAAGATCCTCGGT 57.760 50.000 0.00 0.00 33.34 4.69
1462 1493 3.751479 AAAACAAAACATCTCCAGGGC 57.249 42.857 0.00 0.00 0.00 5.19
1470 1501 6.346359 GCTGATGCTCTGAAAAACAAAACATC 60.346 38.462 0.00 0.00 34.43 3.06
1478 1509 1.069022 TGCGCTGATGCTCTGAAAAAC 60.069 47.619 9.73 0.00 36.97 2.43
1498 1530 2.516227 TCTTCACCCTGTCGATCTCT 57.484 50.000 0.00 0.00 0.00 3.10
1580 1612 5.940470 GCAGGTAGAATTGGAAAGAGAGAAA 59.060 40.000 0.00 0.00 0.00 2.52
1581 1613 5.491982 GCAGGTAGAATTGGAAAGAGAGAA 58.508 41.667 0.00 0.00 0.00 2.87
1583 1615 3.868077 CGCAGGTAGAATTGGAAAGAGAG 59.132 47.826 0.00 0.00 0.00 3.20
1584 1616 3.861840 CGCAGGTAGAATTGGAAAGAGA 58.138 45.455 0.00 0.00 0.00 3.10
1635 1674 0.378257 CGTTAATCAGCTGCCGCAAT 59.622 50.000 9.47 0.00 39.10 3.56
1636 1675 1.643868 CCGTTAATCAGCTGCCGCAA 61.644 55.000 9.47 0.00 39.10 4.85
1643 1683 1.026718 GCCTGCACCGTTAATCAGCT 61.027 55.000 0.00 0.00 0.00 4.24
1650 1690 2.700722 TTCATATGCCTGCACCGTTA 57.299 45.000 0.00 0.00 0.00 3.18
1651 1691 1.745087 CTTTCATATGCCTGCACCGTT 59.255 47.619 0.00 0.00 0.00 4.44
1703 1743 0.387202 CTTCCTCGATGGCGATCAGT 59.613 55.000 9.52 0.00 46.80 3.41
1721 1761 3.288308 CTGGCCGTTCGTGAGAGCT 62.288 63.158 0.00 0.00 43.69 4.09
1724 1764 2.649034 GTCTGGCCGTTCGTGAGA 59.351 61.111 0.00 0.00 39.20 3.27
1730 1770 1.671379 GAGGTTGGTCTGGCCGTTC 60.671 63.158 0.00 0.00 41.21 3.95
1780 1820 4.365723 ACACTTGCAAGCTCTGAATTTTG 58.634 39.130 26.27 14.52 0.00 2.44
1905 1945 5.402398 GCAAAGAGCAGTGGTAAATTTAGG 58.598 41.667 0.00 0.00 44.79 2.69
1922 1962 4.518970 GGTGTACAGAAGGAAATGCAAAGA 59.481 41.667 0.00 0.00 0.00 2.52
1971 2011 4.931002 TGCCAATAAAAAGCAGATCTTTGC 59.069 37.500 0.00 0.00 43.84 3.68
1972 2012 7.385752 TCTTTGCCAATAAAAAGCAGATCTTTG 59.614 33.333 0.00 0.00 43.84 2.77
1974 2014 6.996509 TCTTTGCCAATAAAAAGCAGATCTT 58.003 32.000 0.00 0.00 37.89 2.40
1975 2015 6.594788 TCTTTGCCAATAAAAAGCAGATCT 57.405 33.333 0.00 0.00 37.89 2.75
1976 2016 7.656707 TTTCTTTGCCAATAAAAAGCAGATC 57.343 32.000 0.00 0.00 37.89 2.75
1977 2017 8.625786 ATTTTCTTTGCCAATAAAAAGCAGAT 57.374 26.923 3.30 0.00 37.89 2.90
1979 2019 8.562052 AGAATTTTCTTTGCCAATAAAAAGCAG 58.438 29.630 3.30 0.00 37.89 4.24
1981 2021 8.558700 TCAGAATTTTCTTTGCCAATAAAAAGC 58.441 29.630 3.30 0.00 34.74 3.51
1984 2024 9.775854 TGATCAGAATTTTCTTTGCCAATAAAA 57.224 25.926 0.00 2.02 34.74 1.52
1985 2025 9.947433 ATGATCAGAATTTTCTTTGCCAATAAA 57.053 25.926 0.09 0.00 34.74 1.40
1986 2026 9.373603 CATGATCAGAATTTTCTTTGCCAATAA 57.626 29.630 0.09 0.00 34.74 1.40
1987 2027 7.493320 GCATGATCAGAATTTTCTTTGCCAATA 59.507 33.333 0.09 0.00 34.74 1.90
1988 2028 6.315393 GCATGATCAGAATTTTCTTTGCCAAT 59.685 34.615 0.09 0.00 34.74 3.16
2073 2113 4.574013 GTGCTCAAGAATTACCATCCTCAG 59.426 45.833 0.00 0.00 0.00 3.35
2154 2194 5.136828 TCCATTTCACTAGTTGGCAAAAGA 58.863 37.500 15.54 1.94 0.00 2.52
2203 2556 6.770785 AGCAACACTTTACTGAAACCAAGATA 59.229 34.615 0.00 0.00 0.00 1.98
2308 2661 8.313292 TGAAAAATAATGCAGCAAGGAACTATT 58.687 29.630 0.00 0.00 38.49 1.73
2367 2720 1.409427 GGACTGGGTAGAGGTGATTCG 59.591 57.143 0.00 0.00 0.00 3.34
2469 2823 5.876357 TCAGCTTTTGGGTTACTTATCAGT 58.124 37.500 0.00 0.00 36.99 3.41
2474 2828 6.148811 CGATTTCTCAGCTTTTGGGTTACTTA 59.851 38.462 0.00 0.00 0.00 2.24
2498 2852 2.447244 ACAAGAGGAGAACTTCAGCG 57.553 50.000 0.00 0.00 0.00 5.18
2514 2868 2.417978 CTGCTGGTGCTGGAAACAA 58.582 52.632 0.00 0.00 42.06 2.83
2686 3040 2.676463 GCAGGTAGAGGAGCTTCAGTTG 60.676 54.545 0.00 0.00 31.94 3.16
2721 3075 3.374220 TGCACAAGGAAATTGAAGCTG 57.626 42.857 0.00 0.00 41.83 4.24
2747 3101 9.918630 CAGACATGAAAAGGAAGATACATTTTT 57.081 29.630 0.00 0.00 34.68 1.94
2748 3102 8.526147 CCAGACATGAAAAGGAAGATACATTTT 58.474 33.333 0.00 0.00 36.67 1.82
2875 3230 4.568152 AACATTCAAGCCACACTGTAAC 57.432 40.909 0.00 0.00 0.00 2.50
2886 3241 4.498682 GGCCATCATCACTAACATTCAAGC 60.499 45.833 0.00 0.00 0.00 4.01
2891 3246 3.956199 CCTTGGCCATCATCACTAACATT 59.044 43.478 6.09 0.00 0.00 2.71
2892 3247 3.053395 ACCTTGGCCATCATCACTAACAT 60.053 43.478 6.09 0.00 0.00 2.71
2893 3248 2.308570 ACCTTGGCCATCATCACTAACA 59.691 45.455 6.09 0.00 0.00 2.41
2894 3249 2.684881 CACCTTGGCCATCATCACTAAC 59.315 50.000 6.09 0.00 0.00 2.34
2917 3272 8.057742 GCATTCACATCAAACTTTGTTACTTTG 58.942 33.333 1.44 0.00 0.00 2.77
2983 3338 5.391310 GCTGTGTGTCATTACCTCTTGATTG 60.391 44.000 0.00 0.00 0.00 2.67
2990 3345 3.056536 TCAGAGCTGTGTGTCATTACCTC 60.057 47.826 11.09 0.00 0.00 3.85
2991 3346 2.899900 TCAGAGCTGTGTGTCATTACCT 59.100 45.455 11.09 0.00 0.00 3.08
2992 3347 3.319137 TCAGAGCTGTGTGTCATTACC 57.681 47.619 11.09 0.00 0.00 2.85
2993 3348 4.310769 AGTTCAGAGCTGTGTGTCATTAC 58.689 43.478 11.09 0.10 0.00 1.89
2994 3349 4.607293 AGTTCAGAGCTGTGTGTCATTA 57.393 40.909 11.09 0.00 0.00 1.90
2995 3350 3.482156 AGTTCAGAGCTGTGTGTCATT 57.518 42.857 11.09 0.00 0.00 2.57
3012 3368 4.764823 TGTTTGTTCTGGTCAACTGAAGTT 59.235 37.500 0.00 0.00 37.65 2.66
3083 3439 1.663074 CGCTTCTCCGGCTATCAGC 60.663 63.158 0.00 0.00 41.46 4.26
3095 3451 0.952984 GGAGCAACTTCAGCGCTTCT 60.953 55.000 7.50 0.00 35.75 2.85
3233 3589 1.020861 TGTGCGCTCATGTGATGGTC 61.021 55.000 9.73 0.00 0.00 4.02
3284 3640 2.206635 CGAGAGCCCAAGAGGTGAT 58.793 57.895 0.00 0.00 38.26 3.06
3422 3778 3.801698 TCTGGTGCTTGAGATATTGAGC 58.198 45.455 0.00 0.00 35.74 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.