Multiple sequence alignment - TraesCS1A01G264200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G264200 chr1A 100.000 4195 0 0 1 4195 459524391 459528585 0.000000e+00 7747
1 TraesCS1A01G264200 chr1B 90.905 2111 145 18 2 2091 482189372 482191456 0.000000e+00 2791
2 TraesCS1A01G264200 chr1B 90.030 672 51 7 2176 2846 482191534 482192190 0.000000e+00 856
3 TraesCS1A01G264200 chr1B 90.112 445 42 2 2977 3420 482192196 482192639 1.010000e-160 577
4 TraesCS1A01G264200 chr1B 89.956 229 15 5 3425 3648 482193140 482193365 5.310000e-74 289
5 TraesCS1A01G264200 chr1B 95.652 138 5 1 2858 2994 450029752 450029615 1.960000e-53 220
6 TraesCS1A01G264200 chr1D 90.321 2118 136 19 3 2091 360366313 360368390 0.000000e+00 2712
7 TraesCS1A01G264200 chr1D 87.537 682 58 12 2175 2854 360368467 360369123 0.000000e+00 763
8 TraesCS1A01G264200 chr1D 90.233 430 37 3 3017 3442 360369303 360369731 1.320000e-154 556
9 TraesCS1A01G264200 chr1D 83.707 491 58 11 3675 4152 293166499 293166018 1.070000e-120 444
10 TraesCS1A01G264200 chr1D 88.584 219 17 6 3435 3648 360381294 360381509 4.160000e-65 259
11 TraesCS1A01G264200 chr1D 92.715 151 9 2 2856 3005 347476437 347476288 2.540000e-52 217
12 TraesCS1A01G264200 chr7D 83.426 537 68 7 3675 4195 126665015 126665546 2.930000e-131 479
13 TraesCS1A01G264200 chr7D 82.651 513 77 7 3674 4182 199909489 199908985 1.070000e-120 444
14 TraesCS1A01G264200 chr7D 80.882 544 75 13 3675 4195 426177844 426178381 6.530000e-108 401
15 TraesCS1A01G264200 chr5D 82.909 550 65 11 3668 4195 323792463 323791921 6.350000e-128 468
16 TraesCS1A01G264200 chr5D 83.044 519 75 6 3680 4195 535147865 535148373 3.820000e-125 459
17 TraesCS1A01G264200 chr4D 82.689 543 66 11 3675 4195 10101582 10102118 1.370000e-124 457
18 TraesCS1A01G264200 chr4D 81.132 530 70 11 3675 4182 82556871 82556350 8.450000e-107 398
19 TraesCS1A01G264200 chr4D 81.238 533 57 16 3675 4185 11217496 11216985 1.410000e-104 390
20 TraesCS1A01G264200 chr4D 98.450 129 1 1 2855 2982 94261236 94261364 4.220000e-55 226
21 TraesCS1A01G264200 chr6D 81.835 545 70 9 3671 4195 312801518 312800983 8.330000e-117 431
22 TraesCS1A01G264200 chr5B 82.066 513 83 5 3675 4183 373758279 373758786 3.000000e-116 429
23 TraesCS1A01G264200 chr5B 81.768 543 62 12 3675 4195 426058283 426057756 1.800000e-113 420
24 TraesCS1A01G264200 chr5B 81.768 543 62 12 3675 4195 426060510 426059983 1.800000e-113 420
25 TraesCS1A01G264200 chr5B 96.970 132 3 1 2856 2986 105764762 105764631 1.960000e-53 220
26 TraesCS1A01G264200 chr4B 80.798 526 88 10 3675 4195 652812241 652811724 2.350000e-107 399
27 TraesCS1A01G264200 chr4A 80.108 553 73 15 3670 4195 584475234 584475776 1.100000e-100 377
28 TraesCS1A01G264200 chr4A 96.296 135 3 2 2856 2989 729151969 729151836 1.960000e-53 220
29 TraesCS1A01G264200 chr6A 98.462 130 1 1 2857 2985 381084219 381084348 1.170000e-55 228
30 TraesCS1A01G264200 chr3D 97.710 131 2 1 2854 2983 496172885 496172755 1.520000e-54 224
31 TraesCS1A01G264200 chr2D 96.296 135 4 1 2853 2986 561025618 561025752 1.960000e-53 220
32 TraesCS1A01G264200 chr7A 93.197 147 7 2 2856 2999 330446936 330447082 3.290000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G264200 chr1A 459524391 459528585 4194 False 7747.000000 7747 100.000000 1 4195 1 chr1A.!!$F1 4194
1 TraesCS1A01G264200 chr1B 482189372 482193365 3993 False 1128.250000 2791 90.250750 2 3648 4 chr1B.!!$F1 3646
2 TraesCS1A01G264200 chr1D 360366313 360369731 3418 False 1343.666667 2712 89.363667 3 3442 3 chr1D.!!$F2 3439
3 TraesCS1A01G264200 chr7D 126665015 126665546 531 False 479.000000 479 83.426000 3675 4195 1 chr7D.!!$F1 520
4 TraesCS1A01G264200 chr7D 199908985 199909489 504 True 444.000000 444 82.651000 3674 4182 1 chr7D.!!$R1 508
5 TraesCS1A01G264200 chr7D 426177844 426178381 537 False 401.000000 401 80.882000 3675 4195 1 chr7D.!!$F2 520
6 TraesCS1A01G264200 chr5D 323791921 323792463 542 True 468.000000 468 82.909000 3668 4195 1 chr5D.!!$R1 527
7 TraesCS1A01G264200 chr5D 535147865 535148373 508 False 459.000000 459 83.044000 3680 4195 1 chr5D.!!$F1 515
8 TraesCS1A01G264200 chr4D 10101582 10102118 536 False 457.000000 457 82.689000 3675 4195 1 chr4D.!!$F1 520
9 TraesCS1A01G264200 chr4D 82556350 82556871 521 True 398.000000 398 81.132000 3675 4182 1 chr4D.!!$R2 507
10 TraesCS1A01G264200 chr4D 11216985 11217496 511 True 390.000000 390 81.238000 3675 4185 1 chr4D.!!$R1 510
11 TraesCS1A01G264200 chr6D 312800983 312801518 535 True 431.000000 431 81.835000 3671 4195 1 chr6D.!!$R1 524
12 TraesCS1A01G264200 chr5B 373758279 373758786 507 False 429.000000 429 82.066000 3675 4183 1 chr5B.!!$F1 508
13 TraesCS1A01G264200 chr5B 426057756 426060510 2754 True 420.000000 420 81.768000 3675 4195 2 chr5B.!!$R2 520
14 TraesCS1A01G264200 chr4B 652811724 652812241 517 True 399.000000 399 80.798000 3675 4195 1 chr4B.!!$R1 520
15 TraesCS1A01G264200 chr4A 584475234 584475776 542 False 377.000000 377 80.108000 3670 4195 1 chr4A.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 848 0.247185 ATTTGTTCAGCGCCATTGGG 59.753 50.0 2.29 0.0 37.18 4.12 F
1225 1250 0.038892 GCCATATGGAGCCGCAAATG 60.039 55.0 26.47 0.0 37.39 2.32 F
1226 1251 0.038892 CCATATGGAGCCGCAAATGC 60.039 55.0 17.49 0.0 37.39 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 1767 0.099968 CAATCTTCACATGCCTGCCG 59.900 55.0 0.0 0.0 0.0 5.69 R
3091 3321 0.030101 ACAATGCGAACAAACACGGG 59.970 50.0 0.0 0.0 0.0 5.28 R
3225 3456 0.395724 TCCTCCAGTCTCGCAGCATA 60.396 55.0 0.0 0.0 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 183 3.806507 GCTGGAGATGAGCCCTAAATCTG 60.807 52.174 0.00 0.00 30.83 2.90
251 255 1.512926 CATTATCGGAAGGAAGCGGG 58.487 55.000 0.00 0.00 0.00 6.13
323 327 1.024579 CGTTCCCCAAATCCTCCACG 61.025 60.000 0.00 0.00 0.00 4.94
383 387 1.101635 GGATCCCCTGCGCTTTTACC 61.102 60.000 9.73 0.00 0.00 2.85
508 513 0.664166 CATCCCGTTTGTTGCTGTGC 60.664 55.000 0.00 0.00 0.00 4.57
528 533 2.988684 TGTGTGCCCGGCAAATCC 60.989 61.111 15.39 1.70 41.47 3.01
540 545 1.677633 CAAATCCCCGCGGGTTTCT 60.678 57.895 40.52 20.90 44.74 2.52
585 590 3.685058 GATTTTAGTCGCATGCAGTTCC 58.315 45.455 19.57 0.00 0.00 3.62
591 596 2.570181 GCATGCAGTTCCAGTGGC 59.430 61.111 14.21 0.00 0.00 5.01
594 599 1.975407 ATGCAGTTCCAGTGGCAGC 60.975 57.895 3.51 6.17 39.95 5.25
626 631 2.332104 CGGAGATATGATTCTGGTGCG 58.668 52.381 0.00 0.00 0.00 5.34
629 634 2.992543 GAGATATGATTCTGGTGCGCTC 59.007 50.000 9.73 4.47 0.00 5.03
637 642 4.355151 TGGTGCGCTCCAGAGATA 57.645 55.556 26.46 3.33 33.19 1.98
671 676 6.949578 ACAGAATTTTGTTTCAGTGTTGTG 57.050 33.333 0.00 0.00 0.00 3.33
686 691 1.128692 GTTGTGTGCTCGATACCAAGC 59.871 52.381 0.00 0.00 39.02 4.01
690 695 0.645868 GTGCTCGATACCAAGCGTTC 59.354 55.000 0.00 0.00 41.51 3.95
691 696 0.530744 TGCTCGATACCAAGCGTTCT 59.469 50.000 0.00 0.00 41.51 3.01
696 701 1.927174 CGATACCAAGCGTTCTTCCAG 59.073 52.381 0.00 0.00 0.00 3.86
713 719 6.644347 TCTTCCAGTCTAAATGGTCAGAATC 58.356 40.000 0.00 0.00 39.01 2.52
728 734 3.387374 TCAGAATCCTGAGCTCATCTTCC 59.613 47.826 18.63 7.13 44.01 3.46
735 741 2.873472 CTGAGCTCATCTTCCATCTTGC 59.127 50.000 18.63 0.00 0.00 4.01
742 748 2.905415 TCTTCCATCTTGCCATGGTT 57.095 45.000 14.67 0.00 43.62 3.67
746 758 1.076841 TCCATCTTGCCATGGTTGGAA 59.923 47.619 14.67 0.69 46.92 3.53
765 777 5.814481 TGGAACAGTATCCATGAATTGTCA 58.186 37.500 0.00 0.00 44.52 3.58
779 791 7.601073 ATGAATTGTCATGCGGTATATACAG 57.399 36.000 14.70 11.56 43.13 2.74
780 792 6.521162 TGAATTGTCATGCGGTATATACAGT 58.479 36.000 14.70 0.00 0.00 3.55
781 793 6.645003 TGAATTGTCATGCGGTATATACAGTC 59.355 38.462 14.70 7.62 0.00 3.51
782 794 4.514781 TGTCATGCGGTATATACAGTCC 57.485 45.455 14.70 0.20 0.00 3.85
783 795 3.892588 TGTCATGCGGTATATACAGTCCA 59.107 43.478 14.70 5.65 0.00 4.02
784 796 4.235360 GTCATGCGGTATATACAGTCCAC 58.765 47.826 14.70 3.73 0.00 4.02
787 799 5.712917 TCATGCGGTATATACAGTCCACATA 59.287 40.000 14.70 0.00 0.00 2.29
790 802 4.461781 GCGGTATATACAGTCCACATACCT 59.538 45.833 14.70 0.00 39.21 3.08
791 803 5.621555 GCGGTATATACAGTCCACATACCTG 60.622 48.000 14.70 0.00 39.21 4.00
799 811 3.055167 CAGTCCACATACCTGGTGATGAA 60.055 47.826 10.23 0.00 38.54 2.57
824 836 4.038642 TGGGGTTCACTAAATTTGTTCAGC 59.961 41.667 0.00 0.00 0.00 4.26
832 847 2.083167 AATTTGTTCAGCGCCATTGG 57.917 45.000 2.29 0.00 0.00 3.16
833 848 0.247185 ATTTGTTCAGCGCCATTGGG 59.753 50.000 2.29 0.00 37.18 4.12
836 851 1.112315 TGTTCAGCGCCATTGGGTTT 61.112 50.000 2.29 0.00 36.17 3.27
837 852 0.388520 GTTCAGCGCCATTGGGTTTC 60.389 55.000 2.29 0.00 36.17 2.78
839 854 0.326595 TCAGCGCCATTGGGTTTCTA 59.673 50.000 2.29 0.00 36.17 2.10
843 861 1.802508 GCGCCATTGGGTTTCTATTGC 60.803 52.381 4.53 0.00 36.17 3.56
848 866 4.829492 GCCATTGGGTTTCTATTGCTAGAT 59.171 41.667 4.53 0.00 33.43 1.98
859 877 7.614155 TTCTATTGCTAGATTGCAGGGTGCA 62.614 44.000 0.00 0.00 41.32 4.57
876 894 1.962100 TGCAGTTGCCATGATGTTTCA 59.038 42.857 1.06 0.00 41.18 2.69
886 904 4.941263 GCCATGATGTTTCAGTGTAGGTTA 59.059 41.667 0.00 0.00 34.73 2.85
904 922 3.489738 GGTTATGTGCATGAATCACCTGC 60.490 47.826 0.00 2.12 39.85 4.85
915 933 2.803030 ATCACCTGCTCATTGCTCTT 57.197 45.000 0.00 0.00 43.37 2.85
924 942 5.217978 TGCTCATTGCTCTTTGGATTTTT 57.782 34.783 0.00 0.00 43.37 1.94
925 943 6.343716 TGCTCATTGCTCTTTGGATTTTTA 57.656 33.333 0.00 0.00 43.37 1.52
926 944 6.938507 TGCTCATTGCTCTTTGGATTTTTAT 58.061 32.000 0.00 0.00 43.37 1.40
928 946 6.257193 GCTCATTGCTCTTTGGATTTTTATGG 59.743 38.462 0.00 0.00 38.95 2.74
929 947 7.243604 TCATTGCTCTTTGGATTTTTATGGT 57.756 32.000 0.00 0.00 0.00 3.55
930 948 8.359875 TCATTGCTCTTTGGATTTTTATGGTA 57.640 30.769 0.00 0.00 0.00 3.25
931 949 8.469200 TCATTGCTCTTTGGATTTTTATGGTAG 58.531 33.333 0.00 0.00 0.00 3.18
932 950 7.775053 TTGCTCTTTGGATTTTTATGGTAGT 57.225 32.000 0.00 0.00 0.00 2.73
933 951 7.775053 TGCTCTTTGGATTTTTATGGTAGTT 57.225 32.000 0.00 0.00 0.00 2.24
934 952 8.871629 TGCTCTTTGGATTTTTATGGTAGTTA 57.128 30.769 0.00 0.00 0.00 2.24
963 981 6.877322 TGATAGGATGACTGTTGATGCATATG 59.123 38.462 0.00 0.00 0.00 1.78
978 1003 8.502105 TGATGCATATGATATAAGCCTTCTTG 57.498 34.615 6.97 0.00 33.85 3.02
982 1007 9.170734 TGCATATGATATAAGCCTTCTTGAATC 57.829 33.333 6.97 0.00 33.85 2.52
988 1013 7.935755 TGATATAAGCCTTCTTGAATCTTCAGG 59.064 37.037 0.00 0.00 38.61 3.86
1008 1033 4.574013 CAGGTAATCAGCCAGATGAAGAAC 59.426 45.833 0.00 0.00 36.96 3.01
1076 1101 2.807967 CCAGTTTGACTCGCAAAGATGA 59.192 45.455 0.00 0.00 46.48 2.92
1202 1227 4.560739 TCCATCAGGTATGAAGAGGATGT 58.439 43.478 0.00 0.00 39.39 3.06
1207 1232 5.858381 TCAGGTATGAAGAGGATGTTATGC 58.142 41.667 0.00 0.00 30.61 3.14
1216 1241 5.432680 AGAGGATGTTATGCCATATGGAG 57.567 43.478 26.47 0.00 37.39 3.86
1217 1242 3.944015 GAGGATGTTATGCCATATGGAGC 59.056 47.826 26.47 11.39 37.39 4.70
1218 1243 3.019564 GGATGTTATGCCATATGGAGCC 58.980 50.000 26.47 11.56 37.39 4.70
1219 1244 2.183478 TGTTATGCCATATGGAGCCG 57.817 50.000 26.47 0.00 37.39 5.52
1220 1245 0.804989 GTTATGCCATATGGAGCCGC 59.195 55.000 26.47 9.87 37.39 6.53
1221 1246 0.399833 TTATGCCATATGGAGCCGCA 59.600 50.000 26.47 15.41 37.39 5.69
1222 1247 0.399833 TATGCCATATGGAGCCGCAA 59.600 50.000 26.47 4.24 37.39 4.85
1223 1248 0.467844 ATGCCATATGGAGCCGCAAA 60.468 50.000 26.47 0.07 37.39 3.68
1224 1249 0.467844 TGCCATATGGAGCCGCAAAT 60.468 50.000 26.47 0.00 37.39 2.32
1225 1250 0.038892 GCCATATGGAGCCGCAAATG 60.039 55.000 26.47 0.00 37.39 2.32
1226 1251 0.038892 CCATATGGAGCCGCAAATGC 60.039 55.000 17.49 0.00 37.39 3.56
1227 1252 0.038892 CATATGGAGCCGCAAATGCC 60.039 55.000 0.00 0.00 37.91 4.40
1228 1253 0.467844 ATATGGAGCCGCAAATGCCA 60.468 50.000 0.00 0.00 37.91 4.92
1229 1254 1.102809 TATGGAGCCGCAAATGCCAG 61.103 55.000 0.00 0.00 37.91 4.85
1230 1255 2.751436 GGAGCCGCAAATGCCAGA 60.751 61.111 0.00 0.00 37.91 3.86
1231 1256 2.768492 GGAGCCGCAAATGCCAGAG 61.768 63.158 0.00 0.00 37.91 3.35
1232 1257 1.746615 GAGCCGCAAATGCCAGAGA 60.747 57.895 0.00 0.00 37.91 3.10
1233 1258 1.986575 GAGCCGCAAATGCCAGAGAC 61.987 60.000 0.00 0.00 37.91 3.36
1288 1331 4.729856 GGGGTGGTCCGAACGTCG 62.730 72.222 0.00 0.00 40.07 5.12
1290 1333 2.429739 GGTGGTCCGAACGTCGAC 60.430 66.667 5.18 5.18 43.74 4.20
1310 1353 4.363999 GACCGACTAGATCAAACATCAGG 58.636 47.826 0.00 0.00 0.00 3.86
1311 1354 3.126831 CCGACTAGATCAAACATCAGGC 58.873 50.000 0.00 0.00 0.00 4.85
1312 1355 3.430790 CCGACTAGATCAAACATCAGGCA 60.431 47.826 0.00 0.00 0.00 4.75
1347 1393 0.753111 ATGCGGGCCATTCCTTTCTC 60.753 55.000 4.39 0.00 34.39 2.87
1383 1429 4.590647 TCTGTGAAGAAGAACACCTCAGAT 59.409 41.667 0.00 0.00 36.35 2.90
1398 1444 6.820656 ACACCTCAGATGTTGATGAATCTTAC 59.179 38.462 0.00 0.00 34.68 2.34
1522 1568 6.430308 CCCTGGATATGATGAATTGAGAACTG 59.570 42.308 0.00 0.00 0.00 3.16
1549 1595 3.186702 TGTCTGAACGTGGAATTGACA 57.813 42.857 0.00 0.00 0.00 3.58
1577 1623 1.811965 TCCAGACAATTTGCATGGTCG 59.188 47.619 16.08 0.00 35.49 4.79
1583 1629 2.166254 ACAATTTGCATGGTCGGGATTC 59.834 45.455 0.00 0.00 0.00 2.52
1606 1652 1.134491 TCTGCACAGATGAGCATGGAG 60.134 52.381 5.41 0.00 40.61 3.86
1636 1682 8.103948 ACCTTGTACTGAATCTTCTGATTTTG 57.896 34.615 4.12 0.00 42.43 2.44
1638 1684 8.449397 CCTTGTACTGAATCTTCTGATTTTGAG 58.551 37.037 4.12 0.00 42.43 3.02
1646 1692 7.173907 TGAATCTTCTGATTTTGAGGTGAGTTC 59.826 37.037 0.00 0.00 42.43 3.01
1653 1699 6.826668 TGATTTTGAGGTGAGTTCTACTTCA 58.173 36.000 0.00 0.00 33.11 3.02
1657 1703 5.455056 TGAGGTGAGTTCTACTTCAGTTC 57.545 43.478 0.00 0.00 31.60 3.01
1675 1721 6.833041 TCAGTTCAGTTTTGTGGGTTATCTA 58.167 36.000 0.00 0.00 0.00 1.98
1742 1795 4.456911 GGCATGTGAAGATTGTGAAGAAGA 59.543 41.667 0.00 0.00 0.00 2.87
1746 1799 4.511454 TGTGAAGATTGTGAAGAAGAACCG 59.489 41.667 0.00 0.00 0.00 4.44
1747 1800 3.498397 TGAAGATTGTGAAGAAGAACCGC 59.502 43.478 0.00 0.00 0.00 5.68
1831 1884 6.017192 TCAGCCATATGACCAAAATGAATACG 60.017 38.462 3.65 0.00 0.00 3.06
1902 1955 2.890311 ACAATTGCGAAGTGGATCCAAA 59.110 40.909 18.20 6.36 0.00 3.28
1909 1962 2.540101 CGAAGTGGATCCAAACGCTATC 59.460 50.000 18.20 8.64 0.00 2.08
2018 2071 0.039527 ATTCCGTTGTTGCGCCTTTC 60.040 50.000 4.18 0.00 0.00 2.62
2055 2108 7.040823 AGTCTAAGAGCTTCATTTTGAACCTTG 60.041 37.037 0.00 0.00 32.21 3.61
2063 2116 6.703165 GCTTCATTTTGAACCTTGATTTCAGT 59.297 34.615 0.00 0.00 34.50 3.41
2091 2144 7.014615 AGGTGTTGATAAGCATTTCTCAAACTT 59.985 33.333 0.00 0.00 32.67 2.66
2092 2145 7.327032 GGTGTTGATAAGCATTTCTCAAACTTC 59.673 37.037 0.00 0.00 32.67 3.01
2093 2146 7.327032 GTGTTGATAAGCATTTCTCAAACTTCC 59.673 37.037 0.00 0.00 32.67 3.46
2094 2147 6.182039 TGATAAGCATTTCTCAAACTTCCG 57.818 37.500 0.00 0.00 0.00 4.30
2095 2148 5.705441 TGATAAGCATTTCTCAAACTTCCGT 59.295 36.000 0.00 0.00 0.00 4.69
2096 2149 4.918810 AAGCATTTCTCAAACTTCCGTT 57.081 36.364 0.00 0.00 34.03 4.44
2097 2150 4.918810 AGCATTTCTCAAACTTCCGTTT 57.081 36.364 0.00 0.00 43.85 3.60
2098 2151 6.385649 AAGCATTTCTCAAACTTCCGTTTA 57.614 33.333 0.00 0.00 41.23 2.01
2099 2152 6.385649 AGCATTTCTCAAACTTCCGTTTAA 57.614 33.333 0.00 0.00 41.23 1.52
2100 2153 6.801575 AGCATTTCTCAAACTTCCGTTTAAA 58.198 32.000 0.00 0.00 41.23 1.52
2101 2154 7.262048 AGCATTTCTCAAACTTCCGTTTAAAA 58.738 30.769 0.00 0.00 41.23 1.52
2102 2155 7.762159 AGCATTTCTCAAACTTCCGTTTAAAAA 59.238 29.630 0.00 0.00 41.23 1.94
2139 2192 7.412137 AGCATTTCTTAAACTGTGCATTTTC 57.588 32.000 0.00 0.00 35.17 2.29
2145 2198 5.827797 TCTTAAACTGTGCATTTTCTGGTCT 59.172 36.000 0.00 0.00 0.00 3.85
2149 2202 3.181445 ACTGTGCATTTTCTGGTCTGGTA 60.181 43.478 0.00 0.00 0.00 3.25
2155 2208 5.304101 TGCATTTTCTGGTCTGGTACAAATT 59.696 36.000 0.00 0.00 38.70 1.82
2156 2209 5.634859 GCATTTTCTGGTCTGGTACAAATTG 59.365 40.000 0.00 0.00 38.70 2.32
2164 2217 6.539173 TGGTCTGGTACAAATTGTAACTGAT 58.461 36.000 25.86 0.00 45.65 2.90
2202 2287 7.255208 GCCATGTTCAAATGTTTTCTTCCAAAT 60.255 33.333 0.00 0.00 0.00 2.32
2214 2299 5.964958 TTCTTCCAAATGGATCACTGAAC 57.035 39.130 2.38 0.00 44.98 3.18
2222 2307 8.548025 TCCAAATGGATCACTGAACTCTATTAA 58.452 33.333 0.00 0.00 39.78 1.40
2229 2314 9.606631 GGATCACTGAACTCTATTAAAAGTCAT 57.393 33.333 0.00 0.00 0.00 3.06
2251 2336 8.461222 GTCATGAATTTAATCTGTTCATCACCA 58.539 33.333 0.00 0.00 39.76 4.17
2252 2337 9.192642 TCATGAATTTAATCTGTTCATCACCAT 57.807 29.630 0.00 0.00 39.76 3.55
2264 2349 7.277760 TCTGTTCATCACCATTTCGTATGTAAG 59.722 37.037 0.00 0.00 0.00 2.34
2265 2350 5.984233 TCATCACCATTTCGTATGTAAGC 57.016 39.130 0.00 0.00 0.00 3.09
2328 2413 6.966534 ATCTTGATATTTAAGTGGCTTGGG 57.033 37.500 0.00 0.00 0.00 4.12
2330 2415 6.252995 TCTTGATATTTAAGTGGCTTGGGTT 58.747 36.000 0.00 0.00 0.00 4.11
2331 2416 7.406916 TCTTGATATTTAAGTGGCTTGGGTTA 58.593 34.615 0.00 0.00 0.00 2.85
2332 2417 7.556275 TCTTGATATTTAAGTGGCTTGGGTTAG 59.444 37.037 0.00 0.00 0.00 2.34
2333 2418 5.592688 TGATATTTAAGTGGCTTGGGTTAGC 59.407 40.000 0.00 0.00 40.48 3.09
2341 2426 1.340114 GGCTTGGGTTAGCTAGCTGTT 60.340 52.381 27.68 3.54 40.99 3.16
2370 2455 0.823356 TTGTGCCCAGTGAGCTTTCC 60.823 55.000 0.00 0.00 0.00 3.13
2374 2459 0.905357 GCCCAGTGAGCTTTCCTCTA 59.095 55.000 0.00 0.00 41.35 2.43
2382 2467 6.402222 CAGTGAGCTTTCCTCTATAAACAGT 58.598 40.000 0.00 0.00 41.35 3.55
2393 2478 8.561738 TCCTCTATAAACAGTCATTTGAAACC 57.438 34.615 0.00 0.00 0.00 3.27
2396 2481 9.831737 CTCTATAAACAGTCATTTGAAACCTTG 57.168 33.333 0.00 0.00 0.00 3.61
2410 2495 0.260816 ACCTTGGATGCATGATGCCT 59.739 50.000 15.70 4.65 44.23 4.75
2441 2526 1.401761 TTGCTCTGCCTTGCTTTGAA 58.598 45.000 0.00 0.00 0.00 2.69
2442 2527 1.401761 TGCTCTGCCTTGCTTTGAAA 58.598 45.000 0.00 0.00 0.00 2.69
2453 2538 6.127591 TGCCTTGCTTTGAAACAAAGTAACTA 60.128 34.615 18.29 9.00 30.66 2.24
2456 2541 9.612620 CCTTGCTTTGAAACAAAGTAACTATAG 57.387 33.333 18.29 11.33 30.66 1.31
2470 2555 7.715265 AGTAACTATAGCATTTCCATCAACG 57.285 36.000 0.00 0.00 0.00 4.10
2476 2561 2.030007 AGCATTTCCATCAACGTTGTGG 60.030 45.455 28.98 28.98 33.50 4.17
2479 2564 2.333688 TTCCATCAACGTTGTGGTCA 57.666 45.000 31.11 22.65 33.75 4.02
2493 2578 4.371624 TGTGGTCAAAGATTCTCATGGT 57.628 40.909 0.00 0.00 0.00 3.55
2528 2613 0.796927 GAAGGCTGTACTTTCGTGCC 59.203 55.000 0.00 0.00 43.52 5.01
2706 2791 1.558756 CTTCTGGCTGGAGGTGATCTT 59.441 52.381 0.00 0.00 0.00 2.40
2727 2812 8.738645 ATCTTTGTTCACCATCCTAGTTATTC 57.261 34.615 0.00 0.00 0.00 1.75
2809 2895 9.410556 CTAAATGGTCTGAAGTTAATGGTTTTG 57.589 33.333 0.00 0.00 0.00 2.44
2813 2899 3.254657 TCTGAAGTTAATGGTTTTGCCCG 59.745 43.478 0.00 0.00 36.04 6.13
2821 2907 4.404654 GTTTTGCCCGGCTGAGCG 62.405 66.667 11.61 0.00 0.00 5.03
2857 2943 5.103215 TGGAAGCTCCTTAAGTAGGGAGATA 60.103 44.000 18.13 0.00 45.83 1.98
2858 2944 5.244402 GGAAGCTCCTTAAGTAGGGAGATAC 59.756 48.000 18.13 7.03 45.83 2.24
2859 2945 6.033203 AAGCTCCTTAAGTAGGGAGATACT 57.967 41.667 18.13 5.32 45.83 2.12
2860 2946 6.072649 AAGCTCCTTAAGTAGGGAGATACTC 58.927 44.000 18.13 2.73 45.83 2.59
2861 2947 6.921578 AAGCTCCTTAAGTAGGGAGATACTCC 60.922 46.154 18.13 9.07 45.83 3.85
2862 2948 9.030337 AAGCTCCTTAAGTAGGGAGATACTCCT 62.030 44.444 18.13 4.11 45.83 3.69
2874 2960 5.574970 GAGATACTCCTCCATCCCAAAAT 57.425 43.478 0.00 0.00 0.00 1.82
2875 2961 5.946486 GAGATACTCCTCCATCCCAAAATT 58.054 41.667 0.00 0.00 0.00 1.82
2876 2962 5.946486 AGATACTCCTCCATCCCAAAATTC 58.054 41.667 0.00 0.00 0.00 2.17
2877 2963 5.674035 AGATACTCCTCCATCCCAAAATTCT 59.326 40.000 0.00 0.00 0.00 2.40
2878 2964 4.682021 ACTCCTCCATCCCAAAATTCTT 57.318 40.909 0.00 0.00 0.00 2.52
2879 2965 4.347607 ACTCCTCCATCCCAAAATTCTTG 58.652 43.478 0.00 0.00 0.00 3.02
2880 2966 4.202716 ACTCCTCCATCCCAAAATTCTTGT 60.203 41.667 0.00 0.00 0.00 3.16
2881 2967 4.344104 TCCTCCATCCCAAAATTCTTGTC 58.656 43.478 0.00 0.00 0.00 3.18
2882 2968 4.044571 TCCTCCATCCCAAAATTCTTGTCT 59.955 41.667 0.00 0.00 0.00 3.41
2883 2969 4.774200 CCTCCATCCCAAAATTCTTGTCTT 59.226 41.667 0.00 0.00 0.00 3.01
2884 2970 5.951747 CCTCCATCCCAAAATTCTTGTCTTA 59.048 40.000 0.00 0.00 0.00 2.10
2885 2971 6.096001 CCTCCATCCCAAAATTCTTGTCTTAG 59.904 42.308 0.00 0.00 0.00 2.18
2886 2972 6.789268 TCCATCCCAAAATTCTTGTCTTAGA 58.211 36.000 0.00 0.00 0.00 2.10
2887 2973 7.413446 TCCATCCCAAAATTCTTGTCTTAGAT 58.587 34.615 0.00 0.00 0.00 1.98
2888 2974 7.895429 TCCATCCCAAAATTCTTGTCTTAGATT 59.105 33.333 0.00 0.00 0.00 2.40
2889 2975 8.534496 CCATCCCAAAATTCTTGTCTTAGATTT 58.466 33.333 0.00 0.00 0.00 2.17
2890 2976 9.362539 CATCCCAAAATTCTTGTCTTAGATTTG 57.637 33.333 0.00 0.00 29.84 2.32
2891 2977 8.477419 TCCCAAAATTCTTGTCTTAGATTTGT 57.523 30.769 0.00 0.00 28.79 2.83
2892 2978 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2893 2979 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2901 2987 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
2902 2988 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2904 2990 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2905 2991 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2912 2998 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
2913 2999 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
2914 3000 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
2915 3001 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
2916 3002 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
2917 3003 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
2918 3004 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
2919 3005 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
2920 3006 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
2921 3007 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
2922 3008 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
2923 3009 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
2924 3010 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
2925 3011 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
2926 3012 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
2936 3022 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
2937 3023 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
2938 3024 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
2939 3025 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
2957 3043 9.439500 ACATCCGTATCTAGACTAATCTAAGAC 57.561 37.037 0.00 0.00 36.98 3.01
2958 3044 9.438228 CATCCGTATCTAGACTAATCTAAGACA 57.562 37.037 0.00 0.00 36.98 3.41
2960 3046 9.491675 TCCGTATCTAGACTAATCTAAGACAAG 57.508 37.037 0.00 0.00 36.98 3.16
2961 3047 9.491675 CCGTATCTAGACTAATCTAAGACAAGA 57.508 37.037 0.00 0.00 36.98 3.02
2969 3055 9.454859 AGACTAATCTAAGACAAGAATTTTGGG 57.545 33.333 5.68 0.00 31.46 4.12
2970 3056 9.449719 GACTAATCTAAGACAAGAATTTTGGGA 57.550 33.333 5.68 0.00 0.00 4.37
2971 3057 9.232473 ACTAATCTAAGACAAGAATTTTGGGAC 57.768 33.333 5.68 0.00 0.00 4.46
2972 3058 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2973 3059 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2974 3060 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2975 3061 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2976 3062 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2977 3063 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2978 3064 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2979 3065 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2998 3084 7.362660 GGAGGGAGTACATTGGAAAAATACAAC 60.363 40.741 0.00 0.00 0.00 3.32
3001 3087 8.456471 GGGAGTACATTGGAAAAATACAACTAC 58.544 37.037 0.00 0.00 0.00 2.73
3075 3305 4.526262 TGGCCATGCTAAAAACACTACATT 59.474 37.500 0.00 0.00 0.00 2.71
3091 3321 6.424812 ACACTACATTGTTACCCGAACTAAAC 59.575 38.462 0.00 0.00 38.98 2.01
3094 3324 2.453983 TGTTACCCGAACTAAACCCG 57.546 50.000 0.00 0.00 38.98 5.28
3183 3413 3.113745 CCTGCAATCCCATCGCAC 58.886 61.111 0.00 0.00 0.00 5.34
3188 3418 0.820891 GCAATCCCATCGCACCAGAT 60.821 55.000 0.00 0.00 0.00 2.90
3230 3461 3.004752 GACAGGGTTGTCCAATATGCT 57.995 47.619 0.00 0.00 46.47 3.79
3240 3471 1.202568 TCCAATATGCTGCGAGACTGG 60.203 52.381 0.00 0.00 0.00 4.00
3288 3519 1.880340 CAGCAACTCCTCGATCGGC 60.880 63.158 16.41 8.73 0.00 5.54
3298 3529 1.269723 CCTCGATCGGCAGCTATGTAA 59.730 52.381 16.41 0.00 0.00 2.41
3308 3539 5.465390 TCGGCAGCTATGTAAATATGTCAAC 59.535 40.000 0.00 0.00 0.00 3.18
3324 3555 5.906113 TGTCAACCATGTACTTTTGTTGT 57.094 34.783 15.13 0.00 37.96 3.32
3351 3582 2.980476 CGCATGTAAGTAGCCTCGTATG 59.020 50.000 0.00 0.00 0.00 2.39
3420 3651 4.372656 GTGTTCTCTATGGTGCTATGGAC 58.627 47.826 0.00 0.00 0.00 4.02
3421 3652 3.068165 TGTTCTCTATGGTGCTATGGACG 59.932 47.826 0.00 0.00 0.00 4.79
3463 4193 3.959293 TCATTGAGTGTTGATGCTCCAT 58.041 40.909 0.00 0.00 0.00 3.41
3501 4231 1.918262 AGGCCAACTGAATGGAGATGA 59.082 47.619 5.01 0.00 43.54 2.92
3504 4234 3.703052 GGCCAACTGAATGGAGATGATTT 59.297 43.478 0.00 0.00 43.54 2.17
3505 4235 4.441079 GGCCAACTGAATGGAGATGATTTG 60.441 45.833 0.00 0.00 43.54 2.32
3507 4237 5.337009 GCCAACTGAATGGAGATGATTTGTT 60.337 40.000 8.13 0.00 43.54 2.83
3508 4238 6.097356 CCAACTGAATGGAGATGATTTGTTG 58.903 40.000 0.00 0.00 43.54 3.33
3509 4239 6.294899 CCAACTGAATGGAGATGATTTGTTGT 60.295 38.462 0.00 0.00 43.54 3.32
3510 4240 7.094248 CCAACTGAATGGAGATGATTTGTTGTA 60.094 37.037 0.00 0.00 43.54 2.41
3512 4242 6.600822 ACTGAATGGAGATGATTTGTTGTAGG 59.399 38.462 0.00 0.00 0.00 3.18
3513 4243 6.484288 TGAATGGAGATGATTTGTTGTAGGT 58.516 36.000 0.00 0.00 0.00 3.08
3514 4244 6.599244 TGAATGGAGATGATTTGTTGTAGGTC 59.401 38.462 0.00 0.00 0.00 3.85
3516 4246 3.871594 GGAGATGATTTGTTGTAGGTCGG 59.128 47.826 0.00 0.00 0.00 4.79
3517 4247 4.504858 GAGATGATTTGTTGTAGGTCGGT 58.495 43.478 0.00 0.00 0.00 4.69
3582 4312 2.430694 AGCATCACACTATCTTGCGGTA 59.569 45.455 0.00 0.00 38.32 4.02
3597 4327 1.810412 GCGGTACTTGCTCTTATGGGG 60.810 57.143 3.79 0.00 0.00 4.96
3598 4328 1.760613 CGGTACTTGCTCTTATGGGGA 59.239 52.381 0.00 0.00 0.00 4.81
3599 4329 2.169769 CGGTACTTGCTCTTATGGGGAA 59.830 50.000 0.00 0.00 0.00 3.97
3604 4334 3.117738 ACTTGCTCTTATGGGGAAGATGG 60.118 47.826 15.42 0.00 34.95 3.51
3606 4336 1.777272 GCTCTTATGGGGAAGATGGGT 59.223 52.381 0.00 0.00 34.95 4.51
3609 4339 3.197983 TCTTATGGGGAAGATGGGTTGT 58.802 45.455 0.00 0.00 30.36 3.32
3614 4344 0.323629 GGGAAGATGGGTTGTGACGA 59.676 55.000 0.00 0.00 0.00 4.20
3623 4353 1.202722 GGGTTGTGACGAAAGGAAGGA 60.203 52.381 0.00 0.00 0.00 3.36
3629 4359 4.456535 TGTGACGAAAGGAAGGAAATCAA 58.543 39.130 0.00 0.00 0.00 2.57
3638 4370 2.169144 GGAAGGAAATCAATGGCCAAGG 59.831 50.000 10.96 4.80 0.00 3.61
3648 4380 2.677875 GGCCAAGGTTGCTGAGGG 60.678 66.667 0.00 0.00 0.00 4.30
3649 4381 3.376918 GCCAAGGTTGCTGAGGGC 61.377 66.667 0.00 0.00 42.22 5.19
3650 4382 2.677875 CCAAGGTTGCTGAGGGCC 60.678 66.667 0.00 0.00 40.92 5.80
3651 4383 2.437897 CAAGGTTGCTGAGGGCCT 59.562 61.111 5.25 5.25 40.92 5.19
3652 4384 1.975407 CAAGGTTGCTGAGGGCCTG 60.975 63.158 12.95 0.00 40.92 4.85
3653 4385 2.156098 AAGGTTGCTGAGGGCCTGA 61.156 57.895 12.95 0.00 40.92 3.86
3654 4386 2.045536 GGTTGCTGAGGGCCTGAG 60.046 66.667 16.45 16.45 40.92 3.35
3655 4387 2.045536 GTTGCTGAGGGCCTGAGG 60.046 66.667 21.94 7.35 40.92 3.86
3665 4397 4.803426 GCCTGAGGCGACTGTCGG 62.803 72.222 28.92 13.80 44.43 4.79
3666 4398 4.135153 CCTGAGGCGACTGTCGGG 62.135 72.222 28.92 18.11 44.43 5.14
3667 4399 4.803426 CTGAGGCGACTGTCGGGC 62.803 72.222 28.92 21.15 44.43 6.13
3700 4432 1.114119 TTTGGTTGCCTGCATGCAGA 61.114 50.000 42.21 25.06 46.30 4.26
3701 4433 0.901114 TTGGTTGCCTGCATGCAGAT 60.901 50.000 42.21 0.00 46.30 2.90
3741 4473 5.433526 GGATATGTGTAGCCTGTTTGGTTA 58.566 41.667 0.00 0.00 38.35 2.85
3763 4495 2.153645 CTGGGCTGCATGCGATTTATA 58.846 47.619 14.09 0.00 44.05 0.98
3766 4498 1.808945 GGCTGCATGCGATTTATAGCT 59.191 47.619 19.49 0.00 44.05 3.32
3811 4563 2.432300 CCTGGCCCGGTAGAATCGT 61.432 63.158 4.74 0.00 0.00 3.73
3892 6872 3.375699 ACGGAAGGGACATCTCATAACT 58.624 45.455 0.00 0.00 0.00 2.24
3893 6873 3.385111 ACGGAAGGGACATCTCATAACTC 59.615 47.826 0.00 0.00 0.00 3.01
3894 6874 3.243907 CGGAAGGGACATCTCATAACTCC 60.244 52.174 0.00 0.00 0.00 3.85
3895 6875 3.071747 GGAAGGGACATCTCATAACTCCC 59.928 52.174 0.00 0.00 41.03 4.30
3896 6876 2.695585 AGGGACATCTCATAACTCCCC 58.304 52.381 0.00 0.00 41.58 4.81
3922 6902 2.219325 CTCACTCTCCTGTCACCGCC 62.219 65.000 0.00 0.00 0.00 6.13
3923 6903 2.118513 ACTCTCCTGTCACCGCCT 59.881 61.111 0.00 0.00 0.00 5.52
3924 6904 1.534235 ACTCTCCTGTCACCGCCTT 60.534 57.895 0.00 0.00 0.00 4.35
3925 6905 0.251653 ACTCTCCTGTCACCGCCTTA 60.252 55.000 0.00 0.00 0.00 2.69
3951 6943 1.415672 TTGTTCCCACCGCTCCTCTT 61.416 55.000 0.00 0.00 0.00 2.85
3954 6946 1.125093 TTCCCACCGCTCCTCTTTGA 61.125 55.000 0.00 0.00 0.00 2.69
3996 6988 2.023984 TCTCCTCTGATGGCTTCACCTA 60.024 50.000 0.00 0.00 40.22 3.08
4005 6997 1.983224 GCTTCACCTAGCCCACTGA 59.017 57.895 0.00 0.00 35.06 3.41
4058 7050 1.361204 TTGCCAGGATCCAAGAGTGA 58.639 50.000 15.82 0.00 0.00 3.41
4100 7093 4.329545 GGCAAGGACCTGGCGTCA 62.330 66.667 14.98 0.00 43.95 4.35
4110 7103 4.600576 TGGCGTCAGTGCTGCGAA 62.601 61.111 15.94 4.82 33.99 4.70
4171 7164 1.880819 AATGCGGTACCGGTCGTTCT 61.881 55.000 33.98 4.61 40.19 3.01
4176 7169 0.320160 GGTACCGGTCGTTCTTGCTT 60.320 55.000 12.40 0.00 0.00 3.91
4187 7180 4.741781 CTTGCTTCGCCGCCGTTG 62.742 66.667 0.00 0.00 35.54 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.107459 GGGAAGAAGATGCTCCGCTT 60.107 55.000 0.00 0.00 0.00 4.68
251 255 1.602605 CGGTGGTTTGGTCCCCTTC 60.603 63.158 0.00 0.00 0.00 3.46
298 302 1.095600 GGATTTGGGGAACGAAGCTC 58.904 55.000 0.00 0.00 0.00 4.09
323 327 2.991866 GTCGAACACTGTAGGTTTAGGC 59.008 50.000 0.00 0.00 0.00 3.93
383 387 0.320697 ACGGAGGGAAGAAGAAACCG 59.679 55.000 0.00 0.00 43.61 4.44
441 445 2.621526 TCCGCAGATCGCAGAATAACTA 59.378 45.455 9.58 0.00 43.58 2.24
442 446 1.409064 TCCGCAGATCGCAGAATAACT 59.591 47.619 9.58 0.00 43.58 2.24
443 447 1.852942 TCCGCAGATCGCAGAATAAC 58.147 50.000 9.58 0.00 43.58 1.89
444 448 2.595124 TTCCGCAGATCGCAGAATAA 57.405 45.000 9.58 0.00 43.58 1.40
492 497 2.353376 CGCACAGCAACAAACGGG 60.353 61.111 0.00 0.00 0.00 5.28
540 545 2.630098 CCTAGGATGAAAGATCCGAGCA 59.370 50.000 1.05 0.00 42.87 4.26
585 590 0.461135 ACCAAACAAAGCTGCCACTG 59.539 50.000 0.00 0.00 0.00 3.66
591 596 0.318107 CTCCGCACCAAACAAAGCTG 60.318 55.000 0.00 0.00 0.00 4.24
594 599 3.689161 TCATATCTCCGCACCAAACAAAG 59.311 43.478 0.00 0.00 0.00 2.77
626 631 5.105716 TGTTTCAGTGTAGTATCTCTGGAGC 60.106 44.000 0.00 0.00 32.14 4.70
629 634 6.516739 TCTGTTTCAGTGTAGTATCTCTGG 57.483 41.667 0.00 0.00 32.61 3.86
686 691 4.566004 TGACCATTTAGACTGGAAGAACG 58.434 43.478 0.00 0.00 37.22 3.95
690 695 5.819901 GGATTCTGACCATTTAGACTGGAAG 59.180 44.000 0.00 0.00 37.22 3.46
691 696 5.488919 AGGATTCTGACCATTTAGACTGGAA 59.511 40.000 0.00 0.00 37.22 3.53
696 701 4.813697 GCTCAGGATTCTGACCATTTAGAC 59.186 45.833 0.00 0.00 44.39 2.59
713 719 3.468770 CAAGATGGAAGATGAGCTCAGG 58.531 50.000 22.96 0.00 0.00 3.86
735 741 3.364460 TGGATACTGTTCCAACCATGG 57.636 47.619 11.19 11.19 42.82 3.66
761 773 3.892588 TGGACTGTATATACCGCATGACA 59.107 43.478 10.38 0.00 0.00 3.58
764 776 4.251543 TGTGGACTGTATATACCGCATG 57.748 45.455 10.38 0.00 37.88 4.06
772 784 5.464069 TCACCAGGTATGTGGACTGTATAT 58.536 41.667 0.00 0.00 40.44 0.86
775 787 3.178412 TCACCAGGTATGTGGACTGTA 57.822 47.619 0.00 0.00 40.44 2.74
776 788 2.024176 TCACCAGGTATGTGGACTGT 57.976 50.000 0.00 0.00 40.44 3.55
777 789 2.501316 TCATCACCAGGTATGTGGACTG 59.499 50.000 0.00 0.00 40.44 3.51
778 790 2.832838 TCATCACCAGGTATGTGGACT 58.167 47.619 0.00 0.00 40.44 3.85
779 791 3.627395 TTCATCACCAGGTATGTGGAC 57.373 47.619 0.00 0.00 40.44 4.02
780 792 4.525996 CAATTCATCACCAGGTATGTGGA 58.474 43.478 0.00 0.00 40.44 4.02
781 793 3.633525 CCAATTCATCACCAGGTATGTGG 59.366 47.826 0.00 0.00 44.01 4.17
782 794 3.633525 CCCAATTCATCACCAGGTATGTG 59.366 47.826 0.00 0.00 35.01 3.21
783 795 3.373001 CCCCAATTCATCACCAGGTATGT 60.373 47.826 0.00 0.00 0.00 2.29
784 796 3.225104 CCCCAATTCATCACCAGGTATG 58.775 50.000 0.00 0.00 0.00 2.39
787 799 1.084018 ACCCCAATTCATCACCAGGT 58.916 50.000 0.00 0.00 0.00 4.00
790 802 2.109834 AGTGAACCCCAATTCATCACCA 59.890 45.455 0.00 0.00 40.60 4.17
791 803 2.807676 AGTGAACCCCAATTCATCACC 58.192 47.619 0.00 0.00 40.60 4.02
799 811 6.739331 TGAACAAATTTAGTGAACCCCAAT 57.261 33.333 0.00 0.00 0.00 3.16
824 836 1.750778 AGCAATAGAAACCCAATGGCG 59.249 47.619 0.00 0.00 33.59 5.69
832 847 4.276926 CCCTGCAATCTAGCAATAGAAACC 59.723 45.833 0.00 0.00 45.13 3.27
833 848 4.884164 ACCCTGCAATCTAGCAATAGAAAC 59.116 41.667 0.00 0.00 45.13 2.78
836 851 3.745480 GCACCCTGCAATCTAGCAATAGA 60.745 47.826 0.00 0.00 45.13 1.98
837 852 2.551459 GCACCCTGCAATCTAGCAATAG 59.449 50.000 0.00 0.00 45.13 1.73
839 854 1.396653 GCACCCTGCAATCTAGCAAT 58.603 50.000 0.00 0.00 45.13 3.56
859 877 3.225104 ACACTGAAACATCATGGCAACT 58.775 40.909 0.00 0.00 37.61 3.16
865 883 7.466805 CACATAACCTACACTGAAACATCATG 58.533 38.462 0.00 0.00 0.00 3.07
876 894 5.586243 GTGATTCATGCACATAACCTACACT 59.414 40.000 0.00 0.00 36.31 3.55
904 922 7.325694 ACCATAAAAATCCAAAGAGCAATGAG 58.674 34.615 0.00 0.00 0.00 2.90
926 944 9.601810 ACAGTCATCCTATCAATATAACTACCA 57.398 33.333 0.00 0.00 0.00 3.25
932 950 9.440773 GCATCAACAGTCATCCTATCAATATAA 57.559 33.333 0.00 0.00 0.00 0.98
933 951 8.596293 TGCATCAACAGTCATCCTATCAATATA 58.404 33.333 0.00 0.00 0.00 0.86
934 952 7.455891 TGCATCAACAGTCATCCTATCAATAT 58.544 34.615 0.00 0.00 0.00 1.28
937 955 5.101648 TGCATCAACAGTCATCCTATCAA 57.898 39.130 0.00 0.00 0.00 2.57
948 966 7.400439 AGGCTTATATCATATGCATCAACAGT 58.600 34.615 0.19 0.00 0.00 3.55
963 981 7.936301 ACCTGAAGATTCAAGAAGGCTTATATC 59.064 37.037 0.00 0.00 36.64 1.63
978 1003 5.028549 TCTGGCTGATTACCTGAAGATTC 57.971 43.478 0.00 0.00 32.80 2.52
982 1007 4.412796 TCATCTGGCTGATTACCTGAAG 57.587 45.455 3.90 0.00 38.46 3.02
988 1013 4.517285 TGGTTCTTCATCTGGCTGATTAC 58.483 43.478 3.90 0.00 32.05 1.89
1029 1054 0.315869 CCTTGTTGTTGTCGCGTGAC 60.316 55.000 22.00 22.00 45.71 3.67
1034 1059 1.822581 GAACACCTTGTTGTTGTCGC 58.177 50.000 0.00 0.00 41.28 5.19
1041 1066 0.738389 AACTGGCGAACACCTTGTTG 59.262 50.000 0.00 0.00 41.28 3.33
1076 1101 8.642432 TCTTGTAAGACGGATCAATATCTGAAT 58.358 33.333 0.00 0.00 40.45 2.57
1202 1227 0.399833 TGCGGCTCCATATGGCATAA 59.600 50.000 17.58 0.00 34.44 1.90
1207 1232 0.038892 GCATTTGCGGCTCCATATGG 60.039 55.000 16.25 16.25 0.00 2.74
1216 1241 2.486966 GTCTCTGGCATTTGCGGC 59.513 61.111 0.00 0.00 43.26 6.53
1217 1242 2.753966 CCGTCTCTGGCATTTGCGG 61.754 63.158 6.37 6.37 43.26 5.69
1218 1243 2.787249 CCGTCTCTGGCATTTGCG 59.213 61.111 0.00 0.00 43.26 4.85
1226 1251 0.798776 GACATTTGTGCCGTCTCTGG 59.201 55.000 0.00 0.00 0.00 3.86
1227 1252 0.798776 GGACATTTGTGCCGTCTCTG 59.201 55.000 0.00 0.00 0.00 3.35
1228 1253 0.321653 GGGACATTTGTGCCGTCTCT 60.322 55.000 5.44 0.00 46.37 3.10
1229 1254 2.171635 GGGACATTTGTGCCGTCTC 58.828 57.895 5.44 0.00 46.37 3.36
1230 1255 4.397348 GGGACATTTGTGCCGTCT 57.603 55.556 5.44 0.00 46.37 4.18
1288 1331 4.363999 CCTGATGTTTGATCTAGTCGGTC 58.636 47.826 0.00 0.00 0.00 4.79
1290 1333 3.126831 GCCTGATGTTTGATCTAGTCGG 58.873 50.000 0.00 0.00 0.00 4.79
1310 1353 2.179589 CATTTACATTGACAGCGCTGC 58.820 47.619 36.28 27.34 0.00 5.25
1311 1354 2.179589 GCATTTACATTGACAGCGCTG 58.820 47.619 34.89 34.89 0.00 5.18
1312 1355 1.202065 CGCATTTACATTGACAGCGCT 60.202 47.619 2.64 2.64 37.20 5.92
1347 1393 0.608130 TCACAGACGATGTCCTTGGG 59.392 55.000 0.00 0.00 41.41 4.12
1358 1404 3.053455 GAGGTGTTCTTCTTCACAGACG 58.947 50.000 0.00 0.00 36.43 4.18
1383 1429 6.741992 AATTCTGCGTAAGATTCATCAACA 57.258 33.333 0.00 0.00 43.02 3.33
1398 1444 1.730501 TGAGGCTCAGAAATTCTGCG 58.269 50.000 17.58 13.00 43.95 5.18
1522 1568 3.034721 TCCACGTTCAGACATAACCAC 57.965 47.619 0.00 0.00 0.00 4.16
1549 1595 0.407139 AAATTGTCTGGAGCAGGCCT 59.593 50.000 0.00 0.00 34.88 5.19
1577 1623 3.548770 TCATCTGTGCAGATTGAATCCC 58.451 45.455 11.60 0.00 45.31 3.85
1583 1629 2.033424 CCATGCTCATCTGTGCAGATTG 59.967 50.000 11.60 7.65 45.31 2.67
1606 1652 7.152645 TCAGAAGATTCAGTACAAGGTACAAC 58.847 38.462 9.01 0.00 0.00 3.32
1636 1682 5.010213 ACTGAACTGAAGTAGAACTCACCTC 59.990 44.000 0.00 0.00 0.00 3.85
1638 1684 5.203060 ACTGAACTGAAGTAGAACTCACC 57.797 43.478 0.00 0.00 0.00 4.02
1646 1692 4.881850 ACCCACAAAACTGAACTGAAGTAG 59.118 41.667 0.00 0.00 0.00 2.57
1653 1699 8.706322 AAATAGATAACCCACAAAACTGAACT 57.294 30.769 0.00 0.00 0.00 3.01
1698 1744 3.124976 CCTGCCGCAAAAACCAAATTATG 59.875 43.478 0.00 0.00 0.00 1.90
1699 1745 3.333804 CCTGCCGCAAAAACCAAATTAT 58.666 40.909 0.00 0.00 0.00 1.28
1714 1767 0.099968 CAATCTTCACATGCCTGCCG 59.900 55.000 0.00 0.00 0.00 5.69
1724 1777 4.611581 GCGGTTCTTCTTCACAATCTTCAC 60.612 45.833 0.00 0.00 0.00 3.18
1742 1795 1.873591 CACAACTAAGAGCAAGCGGTT 59.126 47.619 0.00 0.00 0.00 4.44
1746 1799 1.068954 GCACCACAACTAAGAGCAAGC 60.069 52.381 0.00 0.00 0.00 4.01
1747 1800 2.481952 GAGCACCACAACTAAGAGCAAG 59.518 50.000 0.00 0.00 0.00 4.01
1831 1884 4.940654 AGTGGCTTTTCTCATAAGCTCTTC 59.059 41.667 7.43 0.00 45.62 2.87
1909 1962 0.324943 AGTCCAACGAATCCTGTGGG 59.675 55.000 0.00 0.00 0.00 4.61
1968 2021 3.096852 AGGCTAAAAAGGTTGCCCATAC 58.903 45.455 0.00 0.00 45.94 2.39
1984 2037 3.853207 ACGGAATAACCCTATCAGGCTA 58.147 45.455 0.00 0.00 32.73 3.93
1993 2046 1.161843 CGCAACAACGGAATAACCCT 58.838 50.000 0.00 0.00 34.64 4.34
2018 2071 5.140747 AGCTCTTAGACTACAACCACAAG 57.859 43.478 0.00 0.00 0.00 3.16
2055 2108 5.412594 TGCTTATCAACACCTCACTGAAATC 59.587 40.000 0.00 0.00 0.00 2.17
2063 2116 5.559770 TGAGAAATGCTTATCAACACCTCA 58.440 37.500 0.00 0.00 29.91 3.86
2112 2165 9.492973 AAAATGCACAGTTTAAGAAATGCTTAT 57.507 25.926 0.00 0.00 38.79 1.73
2113 2166 8.885494 AAAATGCACAGTTTAAGAAATGCTTA 57.115 26.923 0.00 0.00 38.05 3.09
2114 2167 7.712205 AGAAAATGCACAGTTTAAGAAATGCTT 59.288 29.630 0.00 0.00 40.68 3.91
2115 2168 7.170320 CAGAAAATGCACAGTTTAAGAAATGCT 59.830 33.333 0.00 0.00 34.34 3.79
2116 2169 7.285788 CAGAAAATGCACAGTTTAAGAAATGC 58.714 34.615 0.00 0.00 34.34 3.56
2117 2170 7.439056 ACCAGAAAATGCACAGTTTAAGAAATG 59.561 33.333 0.00 0.00 36.92 2.32
2118 2171 7.500141 ACCAGAAAATGCACAGTTTAAGAAAT 58.500 30.769 0.00 0.00 0.00 2.17
2119 2172 6.872920 ACCAGAAAATGCACAGTTTAAGAAA 58.127 32.000 0.00 0.00 0.00 2.52
2120 2173 6.321181 AGACCAGAAAATGCACAGTTTAAGAA 59.679 34.615 0.00 0.00 0.00 2.52
2121 2174 5.827797 AGACCAGAAAATGCACAGTTTAAGA 59.172 36.000 0.00 0.00 0.00 2.10
2122 2175 5.916883 CAGACCAGAAAATGCACAGTTTAAG 59.083 40.000 0.00 0.00 0.00 1.85
2123 2176 5.221224 CCAGACCAGAAAATGCACAGTTTAA 60.221 40.000 0.00 0.00 0.00 1.52
2124 2177 4.278170 CCAGACCAGAAAATGCACAGTTTA 59.722 41.667 0.00 0.00 0.00 2.01
2125 2178 3.068590 CCAGACCAGAAAATGCACAGTTT 59.931 43.478 0.00 0.00 0.00 2.66
2126 2179 2.624838 CCAGACCAGAAAATGCACAGTT 59.375 45.455 0.00 0.00 0.00 3.16
2127 2180 2.233271 CCAGACCAGAAAATGCACAGT 58.767 47.619 0.00 0.00 0.00 3.55
2128 2181 2.233271 ACCAGACCAGAAAATGCACAG 58.767 47.619 0.00 0.00 0.00 3.66
2129 2182 2.363306 ACCAGACCAGAAAATGCACA 57.637 45.000 0.00 0.00 0.00 4.57
2139 2192 5.995282 TCAGTTACAATTTGTACCAGACCAG 59.005 40.000 8.75 2.05 31.69 4.00
2145 2198 9.019656 AGCATAAATCAGTTACAATTTGTACCA 57.980 29.630 8.75 0.00 31.69 3.25
2149 2202 8.353423 AGGAGCATAAATCAGTTACAATTTGT 57.647 30.769 7.30 7.30 0.00 2.83
2155 2208 5.130311 TGGCTAGGAGCATAAATCAGTTACA 59.870 40.000 0.21 0.00 44.75 2.41
2156 2209 5.611374 TGGCTAGGAGCATAAATCAGTTAC 58.389 41.667 0.21 0.00 44.75 2.50
2164 2217 4.502105 TGAACATGGCTAGGAGCATAAA 57.498 40.909 0.00 0.00 44.75 1.40
2202 2287 8.593679 TGACTTTTAATAGAGTTCAGTGATCCA 58.406 33.333 0.00 0.00 0.00 3.41
2229 2314 9.859427 GAAATGGTGATGAACAGATTAAATTCA 57.141 29.630 0.00 0.00 36.81 2.57
2230 2315 9.013490 CGAAATGGTGATGAACAGATTAAATTC 57.987 33.333 0.00 0.00 0.00 2.17
2303 2388 7.068716 ACCCAAGCCACTTAAATATCAAGATTC 59.931 37.037 4.48 0.00 0.00 2.52
2328 2413 1.731720 AGCAGCAACAGCTAGCTAAC 58.268 50.000 18.86 7.13 41.32 2.34
2330 2415 2.479566 AAAGCAGCAACAGCTAGCTA 57.520 45.000 18.86 0.00 42.53 3.32
2331 2416 2.479566 TAAAGCAGCAACAGCTAGCT 57.520 45.000 12.68 12.68 42.53 3.32
2332 2417 3.119708 ACAATAAAGCAGCAACAGCTAGC 60.120 43.478 6.62 6.62 42.53 3.42
2333 2418 4.409570 CACAATAAAGCAGCAACAGCTAG 58.590 43.478 0.00 0.00 42.53 3.42
2341 2426 0.889994 CTGGGCACAATAAAGCAGCA 59.110 50.000 0.00 0.00 0.00 4.41
2370 2455 9.831737 CAAGGTTTCAAATGACTGTTTATAGAG 57.168 33.333 0.00 0.00 0.00 2.43
2374 2459 7.595819 TCCAAGGTTTCAAATGACTGTTTAT 57.404 32.000 0.00 0.00 0.00 1.40
2382 2467 4.527427 TCATGCATCCAAGGTTTCAAATGA 59.473 37.500 0.00 0.00 0.00 2.57
2410 2495 5.165961 AGGCAGAGCAATAGTGAAAACTA 57.834 39.130 0.00 0.00 0.00 2.24
2441 2526 9.461312 TGATGGAAATGCTATAGTTACTTTGTT 57.539 29.630 0.84 0.00 0.00 2.83
2442 2527 9.461312 TTGATGGAAATGCTATAGTTACTTTGT 57.539 29.630 0.84 0.00 0.00 2.83
2453 2538 4.142403 CCACAACGTTGATGGAAATGCTAT 60.142 41.667 33.66 4.28 33.82 2.97
2456 2541 2.288152 ACCACAACGTTGATGGAAATGC 60.288 45.455 35.56 0.00 35.09 3.56
2463 2548 3.961477 TCTTTGACCACAACGTTGATG 57.039 42.857 33.66 24.62 35.63 3.07
2470 2555 4.520492 ACCATGAGAATCTTTGACCACAAC 59.480 41.667 0.00 0.00 35.63 3.32
2476 2561 3.128242 CAGGCACCATGAGAATCTTTGAC 59.872 47.826 0.00 0.00 34.92 3.18
2479 2564 3.446442 ACAGGCACCATGAGAATCTTT 57.554 42.857 0.00 0.00 34.92 2.52
2706 2791 7.918076 AGAAGAATAACTAGGATGGTGAACAA 58.082 34.615 0.00 0.00 0.00 2.83
2768 2854 8.396390 CAGACCATTTAGAAATCACTGATTCTG 58.604 37.037 4.70 1.15 30.29 3.02
2804 2890 4.404654 CGCTCAGCCGGGCAAAAC 62.405 66.667 23.09 6.92 0.00 2.43
2813 2899 2.866762 CACTATAAACCTTCGCTCAGCC 59.133 50.000 0.00 0.00 0.00 4.85
2821 2907 5.360649 AGGAGCTTCCACTATAAACCTTC 57.639 43.478 5.21 0.00 39.61 3.46
2854 2940 5.946486 AGAATTTTGGGATGGAGGAGTATC 58.054 41.667 0.00 0.00 0.00 2.24
2855 2941 6.131961 CAAGAATTTTGGGATGGAGGAGTAT 58.868 40.000 0.00 0.00 0.00 2.12
2856 2942 5.015178 ACAAGAATTTTGGGATGGAGGAGTA 59.985 40.000 5.68 0.00 0.00 2.59
2857 2943 4.202716 ACAAGAATTTTGGGATGGAGGAGT 60.203 41.667 5.68 0.00 0.00 3.85
2858 2944 4.347607 ACAAGAATTTTGGGATGGAGGAG 58.652 43.478 5.68 0.00 0.00 3.69
2859 2945 4.044571 AGACAAGAATTTTGGGATGGAGGA 59.955 41.667 5.68 0.00 0.00 3.71
2860 2946 4.347607 AGACAAGAATTTTGGGATGGAGG 58.652 43.478 5.68 0.00 0.00 4.30
2861 2947 5.990120 AAGACAAGAATTTTGGGATGGAG 57.010 39.130 5.68 0.00 0.00 3.86
2862 2948 6.789268 TCTAAGACAAGAATTTTGGGATGGA 58.211 36.000 5.68 0.00 0.00 3.41
2863 2949 7.651027 ATCTAAGACAAGAATTTTGGGATGG 57.349 36.000 5.68 0.00 0.00 3.51
2864 2950 9.362539 CAAATCTAAGACAAGAATTTTGGGATG 57.637 33.333 5.68 0.00 28.49 3.51
2865 2951 9.093458 ACAAATCTAAGACAAGAATTTTGGGAT 57.907 29.630 0.00 0.00 33.04 3.85
2866 2952 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2867 2953 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2875 2961 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
2876 2962 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
2878 2964 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
2879 2965 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2886 2972 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
2887 2973 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
2888 2974 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
2889 2975 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
2890 2976 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
2891 2977 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
2892 2978 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
2893 2979 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
2894 2980 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
2895 2981 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
2896 2982 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
2897 2983 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
2898 2984 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
2899 2985 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
2900 2986 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
2910 2996 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
2911 2997 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
2912 2998 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
2913 2999 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
2931 3017 9.439500 GTCTTAGATTAGTCTAGATACGGATGT 57.561 37.037 0.00 0.00 38.17 3.06
2932 3018 9.438228 TGTCTTAGATTAGTCTAGATACGGATG 57.562 37.037 0.00 0.00 38.17 3.51
2934 3020 9.491675 CTTGTCTTAGATTAGTCTAGATACGGA 57.508 37.037 0.00 0.00 38.17 4.69
2935 3021 9.491675 TCTTGTCTTAGATTAGTCTAGATACGG 57.508 37.037 0.00 0.00 38.17 4.02
2943 3029 9.454859 CCCAAAATTCTTGTCTTAGATTAGTCT 57.545 33.333 0.00 0.00 38.52 3.24
2944 3030 9.449719 TCCCAAAATTCTTGTCTTAGATTAGTC 57.550 33.333 0.00 0.00 0.00 2.59
2945 3031 9.232473 GTCCCAAAATTCTTGTCTTAGATTAGT 57.768 33.333 0.00 0.00 0.00 2.24
2946 3032 8.391106 CGTCCCAAAATTCTTGTCTTAGATTAG 58.609 37.037 0.00 0.00 0.00 1.73
2947 3033 7.335924 CCGTCCCAAAATTCTTGTCTTAGATTA 59.664 37.037 0.00 0.00 0.00 1.75
2948 3034 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2949 3035 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2950 3036 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2951 3037 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2952 3038 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2953 3039 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2954 3040 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2955 3041 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2956 3042 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2957 3043 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2958 3044 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2959 3045 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2960 3046 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2961 3047 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2962 3048 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2963 3049 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2964 3050 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2965 3051 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2966 3052 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2967 3053 0.464452 CAATGTACTCCCTCCGTCCC 59.536 60.000 0.00 0.00 0.00 4.46
2968 3054 0.464452 CCAATGTACTCCCTCCGTCC 59.536 60.000 0.00 0.00 0.00 4.79
2969 3055 1.481871 TCCAATGTACTCCCTCCGTC 58.518 55.000 0.00 0.00 0.00 4.79
2970 3056 1.946984 TTCCAATGTACTCCCTCCGT 58.053 50.000 0.00 0.00 0.00 4.69
2971 3057 3.343941 TTTTCCAATGTACTCCCTCCG 57.656 47.619 0.00 0.00 0.00 4.63
2972 3058 6.184789 TGTATTTTTCCAATGTACTCCCTCC 58.815 40.000 0.00 0.00 0.00 4.30
2973 3059 7.393515 AGTTGTATTTTTCCAATGTACTCCCTC 59.606 37.037 0.00 0.00 0.00 4.30
2974 3060 7.238710 AGTTGTATTTTTCCAATGTACTCCCT 58.761 34.615 0.00 0.00 0.00 4.20
2975 3061 7.462571 AGTTGTATTTTTCCAATGTACTCCC 57.537 36.000 0.00 0.00 0.00 4.30
2976 3062 9.227777 AGTAGTTGTATTTTTCCAATGTACTCC 57.772 33.333 0.00 0.00 0.00 3.85
3015 3244 9.875691 AAGAGCAATTTTTGTTTTTCTCTACTT 57.124 25.926 0.00 0.00 0.00 2.24
3029 3259 5.859205 AACACAGGAGAAGAGCAATTTTT 57.141 34.783 0.00 0.00 0.00 1.94
3075 3305 1.691434 ACGGGTTTAGTTCGGGTAACA 59.309 47.619 0.00 0.00 40.83 2.41
3091 3321 0.030101 ACAATGCGAACAAACACGGG 59.970 50.000 0.00 0.00 0.00 5.28
3094 3324 1.780860 GCAGACAATGCGAACAAACAC 59.219 47.619 0.00 0.00 46.99 3.32
3161 3391 1.076485 GATGGGATTGCAGGCCAGT 60.076 57.895 5.01 0.00 0.00 4.00
3183 3413 2.479730 CGGTTCTCGGTTAGTCATCTGG 60.480 54.545 0.00 0.00 34.75 3.86
3212 3442 1.406539 GCAGCATATTGGACAACCCTG 59.593 52.381 0.00 0.00 35.38 4.45
3225 3456 0.395724 TCCTCCAGTCTCGCAGCATA 60.396 55.000 0.00 0.00 0.00 3.14
3230 3461 1.140052 TGTTTTTCCTCCAGTCTCGCA 59.860 47.619 0.00 0.00 0.00 5.10
3240 3471 0.961753 CACCCTGCCTGTTTTTCCTC 59.038 55.000 0.00 0.00 0.00 3.71
3262 3493 1.078848 AGGAGTTGCTGCATCGACC 60.079 57.895 1.84 11.76 0.00 4.79
3263 3494 1.416813 CGAGGAGTTGCTGCATCGAC 61.417 60.000 15.30 5.85 29.82 4.20
3288 3519 8.158169 ACATGGTTGACATATTTACATAGCTG 57.842 34.615 0.00 0.00 37.84 4.24
3298 3529 8.637986 ACAACAAAAGTACATGGTTGACATATT 58.362 29.630 19.93 0.84 40.86 1.28
3308 3539 2.660490 CCGCACAACAAAAGTACATGG 58.340 47.619 0.00 0.00 0.00 3.66
3351 3582 0.459489 TCACAAACCCAAAGCAGCAC 59.541 50.000 0.00 0.00 0.00 4.40
3420 3651 6.255215 TGAAGAAACTGCTAAGAAACAAACG 58.745 36.000 0.00 0.00 0.00 3.60
3421 3652 8.534778 CAATGAAGAAACTGCTAAGAAACAAAC 58.465 33.333 0.00 0.00 0.00 2.93
3463 4193 3.403593 TAGCGCCCATCTGCATGCA 62.404 57.895 21.29 21.29 0.00 3.96
3489 4219 6.484288 ACCTACAACAAATCATCTCCATTCA 58.516 36.000 0.00 0.00 0.00 2.57
3501 4231 2.031508 CGCAAACCGACCTACAACAAAT 60.032 45.455 0.00 0.00 40.02 2.32
3504 4234 0.881159 CCGCAAACCGACCTACAACA 60.881 55.000 0.00 0.00 40.02 3.33
3505 4235 0.881600 ACCGCAAACCGACCTACAAC 60.882 55.000 0.00 0.00 40.02 3.32
3507 4237 1.301087 CACCGCAAACCGACCTACA 60.301 57.895 0.00 0.00 40.02 2.74
3508 4238 0.600782 TTCACCGCAAACCGACCTAC 60.601 55.000 0.00 0.00 40.02 3.18
3509 4239 0.320073 CTTCACCGCAAACCGACCTA 60.320 55.000 0.00 0.00 40.02 3.08
3510 4240 1.597027 CTTCACCGCAAACCGACCT 60.597 57.895 0.00 0.00 40.02 3.85
3512 4242 1.852067 ATGCTTCACCGCAAACCGAC 61.852 55.000 0.00 0.00 44.06 4.79
3513 4243 1.573829 GATGCTTCACCGCAAACCGA 61.574 55.000 0.00 0.00 44.06 4.69
3514 4244 1.154225 GATGCTTCACCGCAAACCG 60.154 57.895 0.00 0.00 44.06 4.44
3516 4246 0.874390 TCTGATGCTTCACCGCAAAC 59.126 50.000 0.00 0.00 44.06 2.93
3517 4247 1.825090 ATCTGATGCTTCACCGCAAA 58.175 45.000 0.00 0.00 44.06 3.68
3556 4286 1.428869 AGATAGTGTGATGCTCCCCC 58.571 55.000 0.00 0.00 0.00 5.40
3582 4312 3.117738 CCATCTTCCCCATAAGAGCAAGT 60.118 47.826 0.00 0.00 38.81 3.16
3597 4327 2.484264 CCTTTCGTCACAACCCATCTTC 59.516 50.000 0.00 0.00 0.00 2.87
3598 4328 2.105821 TCCTTTCGTCACAACCCATCTT 59.894 45.455 0.00 0.00 0.00 2.40
3599 4329 1.697432 TCCTTTCGTCACAACCCATCT 59.303 47.619 0.00 0.00 0.00 2.90
3604 4334 2.249844 TCCTTCCTTTCGTCACAACC 57.750 50.000 0.00 0.00 0.00 3.77
3606 4336 4.456535 TGATTTCCTTCCTTTCGTCACAA 58.543 39.130 0.00 0.00 0.00 3.33
3609 4339 4.458989 CCATTGATTTCCTTCCTTTCGTCA 59.541 41.667 0.00 0.00 0.00 4.35
3614 4344 3.519667 TGGCCATTGATTTCCTTCCTTT 58.480 40.909 0.00 0.00 0.00 3.11
3623 4353 1.980036 AGCAACCTTGGCCATTGATTT 59.020 42.857 19.52 3.46 0.00 2.17
3629 4359 1.304713 CCTCAGCAACCTTGGCCAT 60.305 57.895 6.09 0.00 0.00 4.40
3638 4370 2.045536 CCTCAGGCCCTCAGCAAC 60.046 66.667 0.00 0.00 46.50 4.17
3648 4380 4.803426 CCGACAGTCGCCTCAGGC 62.803 72.222 18.02 5.22 46.75 4.85
3649 4381 4.135153 CCCGACAGTCGCCTCAGG 62.135 72.222 18.02 9.05 38.82 3.86
3650 4382 4.803426 GCCCGACAGTCGCCTCAG 62.803 72.222 18.02 3.30 38.82 3.35
3656 4388 3.991051 ACAGTGGCCCGACAGTCG 61.991 66.667 16.50 16.50 40.07 4.18
3657 4389 2.357517 CACAGTGGCCCGACAGTC 60.358 66.667 0.00 0.00 0.00 3.51
3658 4390 3.941188 CCACAGTGGCCCGACAGT 61.941 66.667 6.67 0.00 0.00 3.55
3659 4391 4.704833 CCCACAGTGGCCCGACAG 62.705 72.222 14.98 0.00 35.79 3.51
3667 4399 2.721231 CAAACACGCCCACAGTGG 59.279 61.111 13.35 13.35 43.41 4.00
3668 4400 1.662438 AACCAAACACGCCCACAGTG 61.662 55.000 0.00 0.00 44.57 3.66
3669 4401 1.379309 AACCAAACACGCCCACAGT 60.379 52.632 0.00 0.00 0.00 3.55
3670 4402 1.065600 CAACCAAACACGCCCACAG 59.934 57.895 0.00 0.00 0.00 3.66
3671 4403 3.069980 GCAACCAAACACGCCCACA 62.070 57.895 0.00 0.00 0.00 4.17
3672 4404 2.279186 GCAACCAAACACGCCCAC 60.279 61.111 0.00 0.00 0.00 4.61
3722 4454 3.081804 GCTAACCAAACAGGCTACACAT 58.918 45.455 0.00 0.00 43.14 3.21
3741 4473 4.501285 ATCGCATGCAGCCCAGCT 62.501 61.111 19.57 0.00 41.38 4.24
3763 4495 2.038033 TGCTTTAAGGTCCGTACAAGCT 59.962 45.455 20.76 2.30 37.97 3.74
3766 4498 2.872842 GCCTGCTTTAAGGTCCGTACAA 60.873 50.000 0.00 0.00 39.75 2.41
3803 4535 1.671328 CGAGTCAGGCTCACGATTCTA 59.329 52.381 2.20 0.00 44.33 2.10
3804 4536 0.453793 CGAGTCAGGCTCACGATTCT 59.546 55.000 2.20 0.00 44.33 2.40
3876 6856 2.251338 AGGGGAGTTATGAGATGTCCCT 59.749 50.000 5.71 0.00 45.57 4.20
3904 6884 2.276116 GGCGGTGACAGGAGAGTGA 61.276 63.158 0.00 0.00 0.00 3.41
3922 6902 0.808755 GTGGGAACAATGCGGGTAAG 59.191 55.000 0.00 0.00 46.06 2.34
3923 6903 0.609681 GGTGGGAACAATGCGGGTAA 60.610 55.000 0.00 0.00 46.06 2.85
3924 6904 1.001887 GGTGGGAACAATGCGGGTA 60.002 57.895 0.00 0.00 46.06 3.69
3925 6905 2.282887 GGTGGGAACAATGCGGGT 60.283 61.111 0.00 0.00 46.06 5.28
3951 6943 2.367202 GGGAGGGGCGATGAGTCAA 61.367 63.158 0.00 0.00 0.00 3.18
3954 6946 2.444895 GAGGGAGGGGCGATGAGT 60.445 66.667 0.00 0.00 0.00 3.41
4005 6997 3.735029 GGTCAGAGGACGACGCGT 61.735 66.667 13.85 13.85 45.28 6.01
4046 7038 1.748591 GCCACCCATCACTCTTGGATC 60.749 57.143 0.00 0.00 36.26 3.36
4100 7093 2.729862 GACGACGTTCGCAGCACT 60.730 61.111 0.13 0.00 45.12 4.40
4110 7103 1.911766 AACAGATGGGGGACGACGT 60.912 57.895 0.00 0.00 0.00 4.34
4160 7153 1.663702 CGAAGCAAGAACGACCGGT 60.664 57.895 6.92 6.92 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.