Multiple sequence alignment - TraesCS1A01G262700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G262700 chr1A 100.000 5087 0 0 797 5883 458220998 458215912 0.000000e+00 9395.0
1 TraesCS1A01G262700 chr1A 100.000 529 0 0 1 529 458221794 458221266 0.000000e+00 977.0
2 TraesCS1A01G262700 chr1A 84.118 170 25 2 1686 1854 359228992 359229160 4.720000e-36 163.0
3 TraesCS1A01G262700 chr1D 87.644 3132 186 91 1315 4355 356932468 356929447 0.000000e+00 3454.0
4 TraesCS1A01G262700 chr1D 90.385 520 28 10 797 1312 356933127 356932626 0.000000e+00 664.0
5 TraesCS1A01G262700 chr1D 91.618 346 12 7 4554 4896 356929090 356928759 4.150000e-126 462.0
6 TraesCS1A01G262700 chr1D 88.593 263 13 7 4937 5192 356928756 356928504 2.660000e-78 303.0
7 TraesCS1A01G262700 chr1D 86.391 169 23 0 1686 1854 288082689 288082857 1.010000e-42 185.0
8 TraesCS1A01G262700 chr1D 88.710 124 5 5 4435 4558 356929331 356929217 6.150000e-30 143.0
9 TraesCS1A01G262700 chr1D 80.357 168 31 2 1686 1852 360386910 360387076 6.190000e-25 126.0
10 TraesCS1A01G262700 chr1D 86.765 68 6 2 114 181 479488525 479488461 8.180000e-09 73.1
11 TraesCS1A01G262700 chr1B 88.974 1705 107 38 847 2526 480442265 480440617 0.000000e+00 2032.0
12 TraesCS1A01G262700 chr1B 89.087 1402 75 24 3870 5256 480439212 480437874 0.000000e+00 1670.0
13 TraesCS1A01G262700 chr1B 85.326 1213 69 39 2719 3871 480440408 480439245 0.000000e+00 1153.0
14 TraesCS1A01G262700 chr1B 85.395 671 62 8 5241 5881 480426139 480425475 0.000000e+00 664.0
15 TraesCS1A01G262700 chr1B 82.625 541 69 12 1 528 480443324 480442796 6.950000e-124 455.0
16 TraesCS1A01G262700 chr1B 89.241 158 8 2 2528 2684 480440561 480440412 7.780000e-44 189.0
17 TraesCS1A01G262700 chr1B 86.391 169 23 0 1686 1854 389552532 389552700 1.010000e-42 185.0
18 TraesCS1A01G262700 chr7A 85.044 341 42 8 5547 5880 80199998 80199660 7.300000e-89 339.0
19 TraesCS1A01G262700 chr7A 84.348 345 43 10 5547 5883 448103522 448103181 1.580000e-85 327.0
20 TraesCS1A01G262700 chr7A 85.981 107 14 1 67 172 116981427 116981533 4.820000e-21 113.0
21 TraesCS1A01G262700 chr2B 84.358 358 38 15 5533 5879 373475962 373475612 9.450000e-88 335.0
22 TraesCS1A01G262700 chr3A 84.840 343 39 11 5547 5879 738080689 738081028 3.400000e-87 333.0
23 TraesCS1A01G262700 chr3A 82.738 168 27 2 1686 1852 651584499 651584665 1.320000e-31 148.0
24 TraesCS1A01G262700 chr7D 83.616 354 47 10 5534 5879 555377519 555377169 7.350000e-84 322.0
25 TraesCS1A01G262700 chr5A 84.012 344 45 9 5547 5883 377139069 377138729 7.350000e-84 322.0
26 TraesCS1A01G262700 chr3D 84.164 341 44 9 5547 5880 332415664 332416001 7.350000e-84 322.0
27 TraesCS1A01G262700 chr3D 82.738 168 27 2 1686 1852 516382181 516382347 1.320000e-31 148.0
28 TraesCS1A01G262700 chr5B 83.333 360 45 12 5533 5883 548254360 548254713 9.510000e-83 318.0
29 TraesCS1A01G262700 chr3B 82.738 168 27 2 1686 1852 679642968 679643134 1.320000e-31 148.0
30 TraesCS1A01G262700 chr3B 97.297 37 1 0 114 150 168276925 168276961 4.920000e-06 63.9
31 TraesCS1A01G262700 chr5D 79.641 167 34 0 7 173 284969454 284969288 2.880000e-23 121.0
32 TraesCS1A01G262700 chr5D 84.314 102 15 1 85 186 287432673 287432773 1.350000e-16 99.0
33 TraesCS1A01G262700 chr5D 89.655 58 6 0 117 174 562709885 562709942 2.270000e-09 75.0
34 TraesCS1A01G262700 chr7B 80.645 124 18 4 114 233 36856880 36856759 2.260000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G262700 chr1A 458215912 458221794 5882 True 5186.0 9395 100.0000 1 5883 2 chr1A.!!$R1 5882
1 TraesCS1A01G262700 chr1D 356928504 356933127 4623 True 1005.2 3454 89.3900 797 5192 5 chr1D.!!$R2 4395
2 TraesCS1A01G262700 chr1B 480437874 480443324 5450 True 1099.8 2032 87.0506 1 5256 5 chr1B.!!$R2 5255
3 TraesCS1A01G262700 chr1B 480425475 480426139 664 True 664.0 664 85.3950 5241 5881 1 chr1B.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 199 0.034896 GTTTGAGGCGAGAGGGTTGA 59.965 55.0 0.00 0.0 0.00 3.18 F
269 280 0.036294 GAGGCGCCCCATTATAGACC 60.036 60.0 26.15 0.0 0.00 3.85 F
1201 1454 0.040958 GTTCTCCTTGCACGCAGTTG 60.041 55.0 0.00 0.0 41.61 3.16 F
1878 2312 0.107848 AGTAACAGGTACGCATGGGC 60.108 55.0 10.10 0.0 37.81 5.36 F
3138 3676 0.454789 TACGTACGTGTGACCATGCG 60.455 55.0 30.25 0.0 0.00 4.73 F
3826 4426 0.525668 GTCCGTACCGTCTGCAGATG 60.526 60.0 26.20 26.2 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1435 0.040958 CAACTGCGTGCAAGGAGAAC 60.041 55.0 26.40 0.0 33.57 3.01 R
1398 1806 0.108186 TGGCTGGATCTAGTTGTGCG 60.108 55.0 8.00 0.0 0.00 5.34 R
2560 3064 0.478072 TGAACTCACCCAATGCACCT 59.522 50.0 0.00 0.0 0.00 4.00 R
3223 3772 0.586319 CGGTGCACATGAACGAAACT 59.414 50.0 20.43 0.0 0.00 2.66 R
4415 5117 0.098200 GGGTCGATTAGCCAAAACGC 59.902 55.0 0.00 0.0 45.71 4.84 R
5557 6432 0.672711 GTTGTTCACCCGAGCCTACC 60.673 60.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.668151 GAGGCGTTCACACTCCCAC 60.668 63.158 0.00 0.00 0.00 4.61
21 22 3.041940 GCGTTCACACTCCCACCG 61.042 66.667 0.00 0.00 0.00 4.94
32 33 4.452733 CCCACCGGAGAAGACGCC 62.453 72.222 9.46 0.00 0.00 5.68
51 52 2.908428 GACGGGCCGTTGGGTTTT 60.908 61.111 34.58 7.16 41.37 2.43
53 54 2.907917 CGGGCCGTTGGGTTTTCA 60.908 61.111 19.97 0.00 34.97 2.69
65 66 1.401018 GGGTTTTCAGGCGATTTCGTG 60.401 52.381 1.55 0.00 42.22 4.35
67 68 2.307049 GTTTTCAGGCGATTTCGTGTG 58.693 47.619 1.55 0.25 42.22 3.82
68 69 1.588674 TTTCAGGCGATTTCGTGTGT 58.411 45.000 1.55 0.00 42.22 3.72
72 73 0.949105 AGGCGATTTCGTGTGTGACC 60.949 55.000 1.55 0.00 42.22 4.02
77 78 2.391724 ATTTCGTGTGTGACCCGGCT 62.392 55.000 0.00 0.00 0.00 5.52
94 95 1.807165 CTGTCAGTCCGATGTGGCG 60.807 63.158 0.00 0.00 37.80 5.69
102 103 2.126071 CGATGTGGCGGACGTTCT 60.126 61.111 0.00 0.00 0.00 3.01
111 112 3.379445 GGACGTTCTCGGGCCTCA 61.379 66.667 0.84 0.00 41.85 3.86
112 113 2.654877 GACGTTCTCGGGCCTCAA 59.345 61.111 0.84 0.00 41.85 3.02
119 120 1.048601 TCTCGGGCCTCAACATATCC 58.951 55.000 0.84 0.00 0.00 2.59
121 122 1.961277 CGGGCCTCAACATATCCGC 60.961 63.158 0.84 0.00 0.00 5.54
131 132 5.512404 CCTCAACATATCCGCCCTACATTTA 60.512 44.000 0.00 0.00 0.00 1.40
144 145 5.738909 CCCTACATTTAGGCTGGATATGAG 58.261 45.833 0.00 0.00 43.56 2.90
147 148 3.331889 ACATTTAGGCTGGATATGAGGGG 59.668 47.826 0.00 0.00 0.00 4.79
157 158 1.417890 GATATGAGGGGTGGTGGTCAG 59.582 57.143 0.00 0.00 0.00 3.51
163 164 3.249189 GGTGGTGGTCAGCCCAGA 61.249 66.667 0.00 0.00 46.45 3.86
164 165 2.032681 GTGGTGGTCAGCCCAGAC 59.967 66.667 0.00 0.00 46.45 3.51
172 176 0.951040 GTCAGCCCAGACGTTTGAGG 60.951 60.000 7.81 8.30 0.00 3.86
174 178 2.032681 GCCCAGACGTTTGAGGCT 59.967 61.111 22.78 0.00 40.57 4.58
176 180 1.672356 CCCAGACGTTTGAGGCTGG 60.672 63.158 11.73 11.73 45.81 4.85
182 186 1.264288 GACGTTTGAGGCTGGTTTGAG 59.736 52.381 0.00 0.00 0.00 3.02
183 187 0.593128 CGTTTGAGGCTGGTTTGAGG 59.407 55.000 0.00 0.00 0.00 3.86
186 190 2.050836 TTGAGGCTGGTTTGAGGCGA 62.051 55.000 0.00 0.00 43.24 5.54
187 191 1.743252 GAGGCTGGTTTGAGGCGAG 60.743 63.158 0.00 0.00 43.24 5.03
188 192 2.172483 GAGGCTGGTTTGAGGCGAGA 62.172 60.000 0.00 0.00 43.24 4.04
190 194 1.743252 GCTGGTTTGAGGCGAGAGG 60.743 63.158 0.00 0.00 0.00 3.69
192 196 1.831652 CTGGTTTGAGGCGAGAGGGT 61.832 60.000 0.00 0.00 0.00 4.34
193 197 1.375326 GGTTTGAGGCGAGAGGGTT 59.625 57.895 0.00 0.00 0.00 4.11
195 199 0.034896 GTTTGAGGCGAGAGGGTTGA 59.965 55.000 0.00 0.00 0.00 3.18
196 200 0.321671 TTTGAGGCGAGAGGGTTGAG 59.678 55.000 0.00 0.00 0.00 3.02
197 201 0.832135 TTGAGGCGAGAGGGTTGAGT 60.832 55.000 0.00 0.00 0.00 3.41
199 203 0.321996 GAGGCGAGAGGGTTGAGTTT 59.678 55.000 0.00 0.00 0.00 2.66
202 206 1.535896 GGCGAGAGGGTTGAGTTTTTC 59.464 52.381 0.00 0.00 0.00 2.29
203 207 2.218603 GCGAGAGGGTTGAGTTTTTCA 58.781 47.619 0.00 0.00 0.00 2.69
204 208 2.616842 GCGAGAGGGTTGAGTTTTTCAA 59.383 45.455 0.00 0.00 43.40 2.69
253 264 3.439129 GGGTGTTTAAGATCGGTTTGAGG 59.561 47.826 0.00 0.00 0.00 3.86
259 270 4.796495 ATCGGTTTGAGGCGCCCC 62.796 66.667 26.15 13.59 0.00 5.80
263 274 1.379309 GGTTTGAGGCGCCCCATTA 60.379 57.895 26.15 5.92 0.00 1.90
264 275 0.755327 GGTTTGAGGCGCCCCATTAT 60.755 55.000 26.15 1.92 0.00 1.28
265 276 1.477923 GGTTTGAGGCGCCCCATTATA 60.478 52.381 26.15 0.00 0.00 0.98
266 277 1.880027 GTTTGAGGCGCCCCATTATAG 59.120 52.381 26.15 0.00 0.00 1.31
267 278 1.429930 TTGAGGCGCCCCATTATAGA 58.570 50.000 26.15 0.00 0.00 1.98
268 279 0.685097 TGAGGCGCCCCATTATAGAC 59.315 55.000 26.15 2.51 0.00 2.59
269 280 0.036294 GAGGCGCCCCATTATAGACC 60.036 60.000 26.15 0.00 0.00 3.85
271 282 1.489560 GGCGCCCCATTATAGACCCT 61.490 60.000 18.11 0.00 0.00 4.34
279 290 4.597507 CCCCATTATAGACCCTCTTAAGCA 59.402 45.833 0.00 0.00 0.00 3.91
280 291 5.513267 CCCCATTATAGACCCTCTTAAGCAC 60.513 48.000 0.00 0.00 0.00 4.40
282 293 6.240002 CCCATTATAGACCCTCTTAAGCACAT 60.240 42.308 0.00 0.00 0.00 3.21
291 302 5.131142 ACCCTCTTAAGCACATAATAGCTGT 59.869 40.000 0.00 0.00 41.70 4.40
305 316 1.457346 AGCTGTGAAGTATTGGCAGC 58.543 50.000 6.72 6.72 46.29 5.25
344 355 2.158593 GGATTAAGCTCTTCCCCTTCCC 60.159 54.545 0.00 0.00 0.00 3.97
359 370 2.928396 CCCCCGGTGTCTTCCAGT 60.928 66.667 0.00 0.00 0.00 4.00
360 371 2.526046 CCCCCGGTGTCTTCCAGTT 61.526 63.158 0.00 0.00 0.00 3.16
403 414 3.309682 CGACGCACATATTCATGGTCTTT 59.690 43.478 0.00 0.00 36.39 2.52
408 419 5.049198 CGCACATATTCATGGTCTTTGCTAT 60.049 40.000 0.00 0.00 36.39 2.97
409 420 6.147581 GCACATATTCATGGTCTTTGCTATG 58.852 40.000 0.00 0.00 36.39 2.23
410 421 6.238842 GCACATATTCATGGTCTTTGCTATGT 60.239 38.462 0.00 0.00 36.39 2.29
411 422 7.136772 CACATATTCATGGTCTTTGCTATGTG 58.863 38.462 0.00 0.00 38.93 3.21
412 423 7.012610 CACATATTCATGGTCTTTGCTATGTGA 59.987 37.037 11.88 0.00 43.77 3.58
413 424 5.824904 ATTCATGGTCTTTGCTATGTGAC 57.175 39.130 0.00 0.00 0.00 3.67
414 425 4.558226 TCATGGTCTTTGCTATGTGACT 57.442 40.909 0.00 0.00 0.00 3.41
415 426 4.256110 TCATGGTCTTTGCTATGTGACTG 58.744 43.478 0.00 0.00 0.00 3.51
450 463 3.119792 GCTCGTCACGTTAGAAAAGTCAG 59.880 47.826 0.00 0.00 0.00 3.51
519 532 6.327279 TCTTTAAAAGGAAACCTTGCTAGC 57.673 37.500 8.10 8.10 43.92 3.42
520 533 6.068670 TCTTTAAAAGGAAACCTTGCTAGCT 58.931 36.000 17.23 0.00 43.92 3.32
521 534 5.705609 TTAAAAGGAAACCTTGCTAGCTG 57.294 39.130 17.23 8.73 43.92 4.24
522 535 1.539157 AAGGAAACCTTGCTAGCTGC 58.461 50.000 17.23 0.00 42.96 5.25
842 1091 1.727335 GCTGCTTCGTCTTCCTTACAC 59.273 52.381 0.00 0.00 0.00 2.90
899 1148 1.078356 GGAAACGGGAGAGAAGCCC 60.078 63.158 0.00 0.00 42.41 5.19
990 1243 0.615331 AGGGCTTGCTTTGAGATCGA 59.385 50.000 0.00 0.00 0.00 3.59
1002 1255 1.069924 GAGATCGATCTCGGCGCATG 61.070 60.000 33.30 0.00 43.29 4.06
1010 1263 2.890109 CTCGGCGCATGCAGATTCC 61.890 63.158 19.57 8.95 44.36 3.01
1028 1281 5.703130 AGATTCCTGTTGTTTCTCTTGTAGC 59.297 40.000 0.00 0.00 0.00 3.58
1060 1313 0.106769 TGTTGCAAGGAGGTCAAGCA 60.107 50.000 0.00 0.00 0.00 3.91
1065 1318 2.158682 TGCAAGGAGGTCAAGCAGTTTA 60.159 45.455 0.00 0.00 0.00 2.01
1066 1319 2.884639 GCAAGGAGGTCAAGCAGTTTAA 59.115 45.455 0.00 0.00 0.00 1.52
1068 1321 4.021981 GCAAGGAGGTCAAGCAGTTTAATT 60.022 41.667 0.00 0.00 0.00 1.40
1069 1322 5.509670 GCAAGGAGGTCAAGCAGTTTAATTT 60.510 40.000 0.00 0.00 0.00 1.82
1070 1323 5.966742 AGGAGGTCAAGCAGTTTAATTTC 57.033 39.130 0.00 0.00 0.00 2.17
1071 1324 4.767409 AGGAGGTCAAGCAGTTTAATTTCC 59.233 41.667 0.00 0.00 0.00 3.13
1072 1325 4.767409 GGAGGTCAAGCAGTTTAATTTCCT 59.233 41.667 0.00 0.00 0.00 3.36
1081 1334 5.594317 AGCAGTTTAATTTCCTCTTGTGTGT 59.406 36.000 0.00 0.00 0.00 3.72
1124 1377 4.991056 TCTTGGAATCTCTCGAACTTTGTG 59.009 41.667 0.00 0.00 0.00 3.33
1134 1387 4.873827 TCTCGAACTTTGTGTGTAAAAGCT 59.126 37.500 0.00 0.00 38.03 3.74
1140 1393 6.359480 ACTTTGTGTGTAAAAGCTGTAGAC 57.641 37.500 0.00 0.00 38.03 2.59
1169 1422 2.678336 CCCTCTCGACTTGGTTTTATGC 59.322 50.000 0.00 0.00 0.00 3.14
1170 1423 3.334691 CCTCTCGACTTGGTTTTATGCA 58.665 45.455 0.00 0.00 0.00 3.96
1171 1424 3.941483 CCTCTCGACTTGGTTTTATGCAT 59.059 43.478 3.79 3.79 0.00 3.96
1172 1425 4.201851 CCTCTCGACTTGGTTTTATGCATG 60.202 45.833 10.16 0.00 0.00 4.06
1181 1434 3.386078 TGGTTTTATGCATGTGGTTGTGT 59.614 39.130 10.16 0.00 0.00 3.72
1182 1435 3.740321 GGTTTTATGCATGTGGTTGTGTG 59.260 43.478 10.16 0.00 0.00 3.82
1194 1447 1.065551 GGTTGTGTGTTCTCCTTGCAC 59.934 52.381 0.00 0.00 0.00 4.57
1195 1448 1.013596 TTGTGTGTTCTCCTTGCACG 58.986 50.000 0.00 0.00 36.04 5.34
1196 1449 1.279840 GTGTGTTCTCCTTGCACGC 59.720 57.895 0.00 0.00 36.04 5.34
1197 1450 1.153269 TGTGTTCTCCTTGCACGCA 60.153 52.632 0.00 0.00 36.04 5.24
1198 1451 1.159713 TGTGTTCTCCTTGCACGCAG 61.160 55.000 0.00 0.00 36.04 5.18
1200 1453 0.463654 TGTTCTCCTTGCACGCAGTT 60.464 50.000 0.00 0.00 41.61 3.16
1201 1454 0.040958 GTTCTCCTTGCACGCAGTTG 60.041 55.000 0.00 0.00 41.61 3.16
1227 1480 1.066587 GCGTACCAGCTAGCTCAGG 59.933 63.158 16.15 16.92 0.00 3.86
1271 1524 8.547069 GTGCATGTTTCAGATCTATCTACTTTC 58.453 37.037 0.00 0.00 34.85 2.62
1272 1525 7.436376 TGCATGTTTCAGATCTATCTACTTTCG 59.564 37.037 0.00 0.00 34.85 3.46
1276 1529 9.355215 TGTTTCAGATCTATCTACTTTCGTTTC 57.645 33.333 0.00 0.00 34.85 2.78
1294 1547 5.591472 TCGTTTCGAGGGTAGATCTATGAAA 59.409 40.000 5.57 8.78 0.00 2.69
1295 1548 5.915758 CGTTTCGAGGGTAGATCTATGAAAG 59.084 44.000 5.57 0.00 0.00 2.62
1296 1549 6.238676 CGTTTCGAGGGTAGATCTATGAAAGA 60.239 42.308 5.57 1.34 39.02 2.52
1398 1806 9.122613 TGTTTAAGCTCAAAATTTTGTTTTTGC 57.877 25.926 25.98 21.28 43.22 3.68
1399 1807 7.945326 TTAAGCTCAAAATTTTGTTTTTGCG 57.055 28.000 25.98 10.97 43.22 4.85
1400 1808 4.658332 GCTCAAAATTTTGTTTTTGCGC 57.342 36.364 25.98 15.42 44.82 6.09
1412 1820 3.234386 GTTTTTGCGCACAACTAGATCC 58.766 45.455 11.12 0.00 34.87 3.36
1418 1826 1.675714 CGCACAACTAGATCCAGCCAA 60.676 52.381 0.00 0.00 0.00 4.52
1445 1853 7.085116 AGTACTAGACTTGATTCAAACTCGTG 58.915 38.462 14.63 8.04 33.13 4.35
1454 1862 5.000591 TGATTCAAACTCGTGATTTAGGCA 58.999 37.500 0.00 0.00 0.00 4.75
1482 1890 3.876309 TTTGGTCTAAAGGTTCAGGCT 57.124 42.857 0.00 0.00 0.00 4.58
1501 1909 3.522553 GCTAACTGCGTCCTAATCAAGT 58.477 45.455 0.00 0.00 0.00 3.16
1507 1915 4.183865 CTGCGTCCTAATCAAGTTCATCA 58.816 43.478 0.00 0.00 0.00 3.07
1509 1917 4.631377 TGCGTCCTAATCAAGTTCATCAAG 59.369 41.667 0.00 0.00 0.00 3.02
1510 1918 4.034510 GCGTCCTAATCAAGTTCATCAAGG 59.965 45.833 0.00 0.00 0.00 3.61
1511 1919 5.178797 CGTCCTAATCAAGTTCATCAAGGT 58.821 41.667 0.00 0.00 0.00 3.50
1512 1920 5.292101 CGTCCTAATCAAGTTCATCAAGGTC 59.708 44.000 0.00 0.00 0.00 3.85
1513 1921 6.410540 GTCCTAATCAAGTTCATCAAGGTCT 58.589 40.000 0.00 0.00 0.00 3.85
1514 1922 7.556844 GTCCTAATCAAGTTCATCAAGGTCTA 58.443 38.462 0.00 0.00 0.00 2.59
1515 1923 8.207545 GTCCTAATCAAGTTCATCAAGGTCTAT 58.792 37.037 0.00 0.00 0.00 1.98
1525 1933 7.930865 AGTTCATCAAGGTCTATTATTCTCAGC 59.069 37.037 0.00 0.00 0.00 4.26
1612 2044 4.094830 ACTGTTTTGTTCCCGTCCTAAT 57.905 40.909 0.00 0.00 0.00 1.73
1641 2075 7.881142 ACTCGATCTCATCAGTATCTTTAAGG 58.119 38.462 0.00 0.00 0.00 2.69
1646 2080 6.763355 TCTCATCAGTATCTTTAAGGCCATC 58.237 40.000 5.01 0.00 0.00 3.51
1672 2106 9.884465 CTTTGTTGTATTCTTTCAAGGTTAGAG 57.116 33.333 0.00 0.00 0.00 2.43
1876 2310 2.159156 TGCTAGTAACAGGTACGCATGG 60.159 50.000 0.00 0.00 37.81 3.66
1878 2312 0.107848 AGTAACAGGTACGCATGGGC 60.108 55.000 10.10 0.00 37.81 5.36
1901 2335 1.066358 GTAGCTACCCAATATCCGCCC 60.066 57.143 13.20 0.00 0.00 6.13
1937 2371 2.987149 CAAGCTAGACGTGACGTGATTT 59.013 45.455 18.09 0.46 41.37 2.17
1946 2380 2.329379 GTGACGTGATTTCGAGAAGCT 58.671 47.619 0.00 0.00 34.70 3.74
2034 2468 7.116662 TCTGAATTTTTAGTTGCAATGATGTGC 59.883 33.333 0.59 0.00 45.15 4.57
2055 2490 3.437049 GCTTGTGTTTGATCTGTCTACCC 59.563 47.826 0.00 0.00 0.00 3.69
2056 2491 3.695830 TGTGTTTGATCTGTCTACCCC 57.304 47.619 0.00 0.00 0.00 4.95
2057 2492 3.248024 TGTGTTTGATCTGTCTACCCCT 58.752 45.455 0.00 0.00 0.00 4.79
2058 2493 4.422057 TGTGTTTGATCTGTCTACCCCTA 58.578 43.478 0.00 0.00 0.00 3.53
2059 2494 5.030147 TGTGTTTGATCTGTCTACCCCTAT 58.970 41.667 0.00 0.00 0.00 2.57
2060 2495 6.199376 TGTGTTTGATCTGTCTACCCCTATA 58.801 40.000 0.00 0.00 0.00 1.31
2074 2509 2.101582 CCCCTATATATGTCTGCGAGGC 59.898 54.545 0.00 0.00 0.00 4.70
2136 2571 1.725641 TCAATCTCATGCGTGTCCAC 58.274 50.000 5.68 0.00 0.00 4.02
2138 2573 1.395954 CAATCTCATGCGTGTCCACTG 59.604 52.381 5.68 0.00 0.00 3.66
2154 2592 4.798387 GTCCACTGTCACACAAAAATGAAC 59.202 41.667 0.00 0.00 0.00 3.18
2156 2594 5.036737 CCACTGTCACACAAAAATGAACTC 58.963 41.667 0.00 0.00 0.00 3.01
2376 2826 1.129437 GTCAGCTGACCGCAGATTTTC 59.871 52.381 32.55 6.20 45.17 2.29
2505 2955 3.262420 CACAGCCACTGTATGTAAGGAC 58.738 50.000 0.00 0.00 43.43 3.85
2526 2976 7.793036 AGGACCTGGTATAAGCTAAACTTTAG 58.207 38.462 0.00 4.39 39.97 1.85
2560 3064 5.661503 TTAGATGGAAAATGATAGGGCCA 57.338 39.130 6.18 0.00 0.00 5.36
2579 3083 0.478072 AGGTGCATTGGGTGAGTTCA 59.522 50.000 0.00 0.00 0.00 3.18
2675 3180 7.656707 AAATTGTGTATTTTCATGCTTCACC 57.343 32.000 0.00 0.00 32.48 4.02
2695 3200 6.439599 TCACCCAAAAACAAATATGTGTACG 58.560 36.000 0.00 0.00 40.46 3.67
2702 3207 7.617533 AAAACAAATATGTGTACGTTCAAGC 57.382 32.000 0.00 0.00 40.46 4.01
2727 3232 4.691860 ACTGCATTCAAGAAGTATGTGC 57.308 40.909 0.00 0.00 0.00 4.57
2758 3268 8.911662 CACAATACTTTATTTTTGTAGTGCACC 58.088 33.333 14.63 0.00 36.22 5.01
2770 3280 7.811117 TTTGTAGTGCACCAAAAGTAATAGT 57.189 32.000 14.63 0.00 0.00 2.12
2773 3283 6.649141 TGTAGTGCACCAAAAGTAATAGTGAG 59.351 38.462 14.63 0.00 0.00 3.51
2929 3451 6.837992 TCTGGAACAACGCTATAATTTGAAC 58.162 36.000 0.00 0.00 38.70 3.18
2960 3482 8.571336 CATTGTTGGTATAATTCATCCCTTCTC 58.429 37.037 0.00 0.00 0.00 2.87
2978 3515 6.041182 CCCTTCTCATGAATTAATTGATGGCA 59.959 38.462 22.36 10.29 33.13 4.92
2981 3518 7.034685 TCTCATGAATTAATTGATGGCAGTG 57.965 36.000 22.36 11.14 33.13 3.66
3000 3537 3.009473 AGTGTACACTCATTCCATGGCTT 59.991 43.478 22.95 0.00 36.92 4.35
3001 3538 3.127548 GTGTACACTCATTCCATGGCTTG 59.872 47.826 18.92 7.15 0.00 4.01
3011 3548 7.136822 TCATTCCATGGCTTGTTACTATAGT 57.863 36.000 6.96 10.87 0.00 2.12
3025 3562 6.538742 TGTTACTATAGTCTGCATTTGCCTTC 59.461 38.462 9.12 0.00 41.18 3.46
3035 3572 5.046878 TCTGCATTTGCCTTCTCATTTTCAT 60.047 36.000 0.00 0.00 41.18 2.57
3036 3573 5.553123 TGCATTTGCCTTCTCATTTTCATT 58.447 33.333 0.00 0.00 41.18 2.57
3037 3574 5.998981 TGCATTTGCCTTCTCATTTTCATTT 59.001 32.000 0.00 0.00 41.18 2.32
3038 3575 6.487331 TGCATTTGCCTTCTCATTTTCATTTT 59.513 30.769 0.00 0.00 41.18 1.82
3039 3576 7.019418 GCATTTGCCTTCTCATTTTCATTTTC 58.981 34.615 0.00 0.00 34.31 2.29
3040 3577 7.308109 GCATTTGCCTTCTCATTTTCATTTTCA 60.308 33.333 0.00 0.00 34.31 2.69
3082 3619 9.715121 TTGTTTAATTAAGATCCAAGAGTACGT 57.285 29.630 0.00 0.00 0.00 3.57
3111 3649 3.004752 ACCTTCAGTTGTCTTTGCAGT 57.995 42.857 0.00 0.00 0.00 4.40
3138 3676 0.454789 TACGTACGTGTGACCATGCG 60.455 55.000 30.25 0.00 0.00 4.73
3212 3761 2.095263 CACACACGCCCCTGAAATAAAG 60.095 50.000 0.00 0.00 0.00 1.85
3223 3772 4.076394 CCTGAAATAAAGGGTGGTTTCGA 58.924 43.478 0.00 0.00 34.23 3.71
3265 3814 0.914644 AGGGTGAGATGTGGATGTGG 59.085 55.000 0.00 0.00 0.00 4.17
3268 3817 2.705658 GGGTGAGATGTGGATGTGGATA 59.294 50.000 0.00 0.00 0.00 2.59
3269 3818 3.328931 GGGTGAGATGTGGATGTGGATAT 59.671 47.826 0.00 0.00 0.00 1.63
3270 3819 4.321718 GGTGAGATGTGGATGTGGATATG 58.678 47.826 0.00 0.00 0.00 1.78
3271 3820 4.202398 GGTGAGATGTGGATGTGGATATGT 60.202 45.833 0.00 0.00 0.00 2.29
3272 3821 5.012046 GGTGAGATGTGGATGTGGATATGTA 59.988 44.000 0.00 0.00 0.00 2.29
3273 3822 5.928839 GTGAGATGTGGATGTGGATATGTAC 59.071 44.000 0.00 0.00 0.00 2.90
3304 3853 4.923281 GTCATCAACAAAGTAAATGGGTGC 59.077 41.667 0.00 0.00 0.00 5.01
3327 3904 1.568025 CATGCATGCTCGGTCGATG 59.432 57.895 20.33 8.37 0.00 3.84
3328 3905 1.596203 ATGCATGCTCGGTCGATGG 60.596 57.895 20.33 0.00 0.00 3.51
3363 3940 2.081585 AACCCAGGTTGGCTCTTCCC 62.082 60.000 0.07 0.00 35.79 3.97
3427 4004 3.218453 TCCTCCACTCGAGATTCAGATC 58.782 50.000 21.68 0.00 41.63 2.75
3428 4005 2.954989 CCTCCACTCGAGATTCAGATCA 59.045 50.000 21.68 0.00 41.63 2.92
3429 4006 3.573538 CCTCCACTCGAGATTCAGATCAT 59.426 47.826 21.68 0.00 41.63 2.45
3430 4007 4.321156 CCTCCACTCGAGATTCAGATCATC 60.321 50.000 21.68 0.00 41.63 2.92
3431 4008 4.210331 TCCACTCGAGATTCAGATCATCA 58.790 43.478 21.68 0.00 34.60 3.07
3432 4009 4.277921 TCCACTCGAGATTCAGATCATCAG 59.722 45.833 21.68 0.00 34.60 2.90
3433 4010 4.277921 CCACTCGAGATTCAGATCATCAGA 59.722 45.833 21.68 0.00 34.60 3.27
3434 4011 5.047872 CCACTCGAGATTCAGATCATCAGAT 60.048 44.000 21.68 0.00 37.13 2.90
3435 4012 5.859648 CACTCGAGATTCAGATCATCAGATG 59.140 44.000 21.68 3.71 33.72 2.90
3436 4013 4.807443 TCGAGATTCAGATCATCAGATGC 58.193 43.478 5.41 0.00 33.72 3.91
3437 4014 4.280174 TCGAGATTCAGATCATCAGATGCA 59.720 41.667 5.41 0.00 33.72 3.96
3438 4015 5.047235 TCGAGATTCAGATCATCAGATGCAT 60.047 40.000 0.00 0.00 33.72 3.96
3439 4016 5.062809 CGAGATTCAGATCATCAGATGCATG 59.937 44.000 2.46 4.53 33.72 4.06
3440 4017 4.697828 AGATTCAGATCATCAGATGCATGC 59.302 41.667 11.82 11.82 33.72 4.06
3441 4018 3.485463 TCAGATCATCAGATGCATGCA 57.515 42.857 25.04 25.04 33.72 3.96
3442 4019 3.139077 TCAGATCATCAGATGCATGCAC 58.861 45.455 25.37 16.77 33.72 4.57
3443 4020 2.096218 CAGATCATCAGATGCATGCACG 60.096 50.000 25.37 14.82 33.72 5.34
3444 4021 0.591659 ATCATCAGATGCATGCACGC 59.408 50.000 25.37 18.20 31.91 5.34
3446 4023 0.591488 CATCAGATGCATGCACGCAC 60.591 55.000 25.37 14.54 46.56 5.34
3447 4024 2.043676 ATCAGATGCATGCACGCACG 62.044 55.000 25.37 13.09 46.56 5.34
3448 4025 4.170062 AGATGCATGCACGCACGC 62.170 61.111 25.37 5.32 46.56 5.34
3469 4062 2.031314 CACGCACATGCCTCTTTCTATG 59.969 50.000 0.00 0.00 37.91 2.23
3580 4174 9.185192 CCTTTTGTGTTTCTGAATATTCTGTTC 57.815 33.333 16.24 10.56 0.00 3.18
3675 4269 1.734465 CAATTCTCAGGTGAGCGGTTC 59.266 52.381 1.81 0.00 41.80 3.62
3683 4277 1.444119 GGTGAGCGGTTCTGTTTGCA 61.444 55.000 0.00 0.00 0.00 4.08
3724 4321 9.864034 GTTTAACTTGTGATCATATGGATTACG 57.136 33.333 0.00 0.00 43.49 3.18
3727 4324 8.506168 AACTTGTGATCATATGGATTACGTTT 57.494 30.769 0.00 0.00 43.49 3.60
3728 4325 7.919690 ACTTGTGATCATATGGATTACGTTTG 58.080 34.615 0.00 0.00 43.49 2.93
3729 4326 7.768582 ACTTGTGATCATATGGATTACGTTTGA 59.231 33.333 0.00 0.00 43.49 2.69
3732 4329 8.773645 TGTGATCATATGGATTACGTTTGATTC 58.226 33.333 0.00 0.00 43.49 2.52
3742 4341 8.071368 TGGATTACGTTTGATTCAGTACAAAAC 58.929 33.333 0.00 0.00 37.66 2.43
3786 4385 0.798776 CTGTCTGACGAACCAATGCC 59.201 55.000 2.98 0.00 0.00 4.40
3795 4395 1.296727 GAACCAATGCCCGCTAGTAC 58.703 55.000 0.00 0.00 0.00 2.73
3809 4409 6.622462 GCCCGCTAGTACTATATAACTGTGTC 60.622 46.154 2.33 0.00 0.00 3.67
3810 4410 6.128063 CCCGCTAGTACTATATAACTGTGTCC 60.128 46.154 2.33 0.00 0.00 4.02
3826 4426 0.525668 GTCCGTACCGTCTGCAGATG 60.526 60.000 26.20 26.20 0.00 2.90
3828 4428 0.802222 CCGTACCGTCTGCAGATGTG 60.802 60.000 29.44 23.13 0.00 3.21
3929 4568 6.148811 TGGTTCCAGTCGATTTACTTGATTTC 59.851 38.462 0.00 0.00 0.00 2.17
3930 4569 6.241385 GTTCCAGTCGATTTACTTGATTTCG 58.759 40.000 0.00 0.00 0.00 3.46
4020 4659 3.244156 TGCAAACAGGTATGTACGTACG 58.756 45.455 20.18 15.01 39.29 3.67
4021 4660 3.244976 GCAAACAGGTATGTACGTACGT 58.755 45.455 25.98 25.98 39.29 3.57
4226 4868 9.724839 TTTTGCTTTGTGATTAACTAGTTACAC 57.275 29.630 21.18 21.18 0.00 2.90
4241 4883 8.174733 ACTAGTTACACACTTACATGTACAGT 57.825 34.615 4.68 9.57 36.88 3.55
4242 4884 9.288576 ACTAGTTACACACTTACATGTACAGTA 57.711 33.333 4.68 1.55 36.88 2.74
4243 4885 9.552114 CTAGTTACACACTTACATGTACAGTAC 57.448 37.037 4.68 3.49 36.88 2.73
4244 4886 8.174733 AGTTACACACTTACATGTACAGTACT 57.825 34.615 12.07 9.12 31.09 2.73
4245 4887 9.288576 AGTTACACACTTACATGTACAGTACTA 57.711 33.333 12.07 0.00 31.09 1.82
4246 4888 9.552114 GTTACACACTTACATGTACAGTACTAG 57.448 37.037 12.07 0.90 31.09 2.57
4254 4896 9.136952 CTTACATGTACAGTACTAGTTTTCACC 57.863 37.037 12.07 0.00 0.00 4.02
4260 4902 4.099881 ACAGTACTAGTTTTCACCGTTCCA 59.900 41.667 0.00 0.00 0.00 3.53
4264 4906 2.702592 AGTTTTCACCGTTCCAGTCA 57.297 45.000 0.00 0.00 0.00 3.41
4269 4911 3.417069 TTCACCGTTCCAGTCATCAAT 57.583 42.857 0.00 0.00 0.00 2.57
4270 4912 2.972625 TCACCGTTCCAGTCATCAATC 58.027 47.619 0.00 0.00 0.00 2.67
4271 4913 2.301583 TCACCGTTCCAGTCATCAATCA 59.698 45.455 0.00 0.00 0.00 2.57
4272 4914 3.073678 CACCGTTCCAGTCATCAATCAA 58.926 45.455 0.00 0.00 0.00 2.57
4273 4915 3.125829 CACCGTTCCAGTCATCAATCAAG 59.874 47.826 0.00 0.00 0.00 3.02
4280 4922 5.875224 TCCAGTCATCAATCAAGTTAACCA 58.125 37.500 0.88 0.00 0.00 3.67
4302 4944 6.040842 ACCAATATCCATATGCACTTTTGGTC 59.959 38.462 16.28 0.00 33.12 4.02
4355 4997 5.008019 CGAATACATGCAGAAGCTGGTAATT 59.992 40.000 0.00 0.00 42.74 1.40
4356 4998 6.382869 AATACATGCAGAAGCTGGTAATTC 57.617 37.500 0.00 0.00 42.74 2.17
4359 5001 4.337555 ACATGCAGAAGCTGGTAATTCATC 59.662 41.667 0.00 0.00 42.74 2.92
4360 5002 3.282021 TGCAGAAGCTGGTAATTCATCC 58.718 45.455 0.00 0.00 42.74 3.51
4384 5086 4.827692 TCCATATGCATATACCGGTTGAC 58.172 43.478 18.70 2.24 0.00 3.18
4387 5089 2.902705 TGCATATACCGGTTGACTCC 57.097 50.000 15.04 0.00 0.00 3.85
4389 5091 2.703536 TGCATATACCGGTTGACTCCAT 59.296 45.455 15.04 0.00 0.00 3.41
4391 5093 4.134563 GCATATACCGGTTGACTCCATTT 58.865 43.478 15.04 0.00 0.00 2.32
4393 5095 3.992943 ATACCGGTTGACTCCATTTCA 57.007 42.857 15.04 0.00 0.00 2.69
4396 5098 3.292460 ACCGGTTGACTCCATTTCAAAA 58.708 40.909 0.00 0.00 34.78 2.44
4400 5102 6.035843 CCGGTTGACTCCATTTCAAAATATG 58.964 40.000 0.00 0.00 34.78 1.78
4414 5116 9.887862 ATTTCAAAATATGATTATCCTCCTGGT 57.112 29.630 0.00 0.00 38.03 4.00
4415 5117 8.696043 TTCAAAATATGATTATCCTCCTGGTG 57.304 34.615 0.00 0.00 38.03 4.17
4416 5118 6.716628 TCAAAATATGATTATCCTCCTGGTGC 59.283 38.462 0.00 0.00 31.50 5.01
4417 5119 2.847327 ATGATTATCCTCCTGGTGCG 57.153 50.000 0.00 0.00 34.23 5.34
4418 5120 1.496060 TGATTATCCTCCTGGTGCGT 58.504 50.000 0.00 0.00 34.23 5.24
4419 5121 1.837439 TGATTATCCTCCTGGTGCGTT 59.163 47.619 0.00 0.00 34.23 4.84
4420 5122 2.238646 TGATTATCCTCCTGGTGCGTTT 59.761 45.455 0.00 0.00 34.23 3.60
4421 5123 2.871096 TTATCCTCCTGGTGCGTTTT 57.129 45.000 0.00 0.00 34.23 2.43
4422 5124 2.107950 TATCCTCCTGGTGCGTTTTG 57.892 50.000 0.00 0.00 34.23 2.44
4423 5125 0.609131 ATCCTCCTGGTGCGTTTTGG 60.609 55.000 0.00 0.00 34.23 3.28
4424 5126 2.644992 CTCCTGGTGCGTTTTGGC 59.355 61.111 0.00 0.00 0.00 4.52
4425 5127 1.898574 CTCCTGGTGCGTTTTGGCT 60.899 57.895 0.00 0.00 0.00 4.75
4426 5128 0.605319 CTCCTGGTGCGTTTTGGCTA 60.605 55.000 0.00 0.00 0.00 3.93
4427 5129 0.179015 TCCTGGTGCGTTTTGGCTAA 60.179 50.000 0.00 0.00 0.00 3.09
4428 5130 0.887933 CCTGGTGCGTTTTGGCTAAT 59.112 50.000 0.00 0.00 0.00 1.73
4429 5131 1.135402 CCTGGTGCGTTTTGGCTAATC 60.135 52.381 0.00 0.00 0.00 1.75
4430 5132 0.519519 TGGTGCGTTTTGGCTAATCG 59.480 50.000 7.60 7.60 33.22 3.34
4431 5133 0.800012 GGTGCGTTTTGGCTAATCGA 59.200 50.000 14.60 0.00 32.05 3.59
4432 5134 1.465187 GGTGCGTTTTGGCTAATCGAC 60.465 52.381 14.60 9.85 32.05 4.20
4433 5135 0.800012 TGCGTTTTGGCTAATCGACC 59.200 50.000 14.60 0.94 32.05 4.79
4474 5176 0.753848 CTGCACCATCCATCCATGCA 60.754 55.000 0.00 0.00 43.70 3.96
4475 5177 0.105913 TGCACCATCCATCCATGCAT 60.106 50.000 0.00 0.00 41.18 3.96
4476 5178 0.317160 GCACCATCCATCCATGCATG 59.683 55.000 20.19 20.19 36.30 4.06
4477 5179 0.317160 CACCATCCATCCATGCATGC 59.683 55.000 21.69 11.82 0.00 4.06
4501 5203 2.430610 GGAGGCGGATCTGCAGAGT 61.431 63.158 27.26 10.32 36.28 3.24
4534 5236 3.179265 CGAGCCAAGGTACGCACG 61.179 66.667 0.00 0.00 33.05 5.34
4535 5237 2.813908 GAGCCAAGGTACGCACGG 60.814 66.667 0.00 0.00 0.00 4.94
4538 5240 3.419759 CCAAGGTACGCACGGCAC 61.420 66.667 0.00 0.00 0.00 5.01
4559 5392 1.817357 TTCCTGCATGCTTCTCAGTG 58.183 50.000 20.33 2.12 0.00 3.66
4579 5412 5.345202 CAGTGTACTGTAACCAAAGATCGTC 59.655 44.000 3.88 0.00 39.09 4.20
4602 5435 7.324178 GTCTGGTGTTGATCTCTAATAGTTGT 58.676 38.462 0.00 0.00 0.00 3.32
4606 5439 9.599866 TGGTGTTGATCTCTAATAGTTGTAATG 57.400 33.333 0.00 0.00 0.00 1.90
4755 5591 1.480212 TACCACCACCAGGCAGTGAG 61.480 60.000 10.49 4.34 40.34 3.51
4896 5739 1.602851 GAACTGATCGACCGCTAGCTA 59.397 52.381 13.93 0.00 0.00 3.32
4897 5740 1.231221 ACTGATCGACCGCTAGCTAG 58.769 55.000 16.84 16.84 0.00 3.42
4908 5751 1.657556 CTAGCTAGCTCCACTCGGC 59.342 63.158 23.26 0.00 0.00 5.54
4953 5796 3.917760 GGAGATAGCACCCGCGCT 61.918 66.667 5.56 0.00 45.49 5.92
4986 5829 6.183810 TCCATGTCCTCTACTAGTTCGATA 57.816 41.667 0.00 0.00 0.00 2.92
4988 5831 5.413213 CCATGTCCTCTACTAGTTCGATAGG 59.587 48.000 0.00 1.65 0.00 2.57
5018 5861 5.880332 TGGATAACCTACGTACGTCTACTTT 59.120 40.000 26.53 13.92 37.04 2.66
5092 5942 3.416119 CGAAGCGAGGAAGTGTATGTA 57.584 47.619 0.00 0.00 0.00 2.29
5094 5944 3.181499 CGAAGCGAGGAAGTGTATGTAGT 60.181 47.826 0.00 0.00 0.00 2.73
5095 5945 4.034858 CGAAGCGAGGAAGTGTATGTAGTA 59.965 45.833 0.00 0.00 0.00 1.82
5096 5946 4.897025 AGCGAGGAAGTGTATGTAGTAC 57.103 45.455 0.00 0.00 0.00 2.73
5100 5950 5.732288 CGAGGAAGTGTATGTAGTACGTAC 58.268 45.833 21.13 21.13 40.18 3.67
5206 6056 3.165058 CTTGTGCGTCAAGGCTAGATA 57.835 47.619 11.91 0.00 46.85 1.98
5216 6066 4.894114 GTCAAGGCTAGATAGGGTCTTACA 59.106 45.833 0.00 0.00 38.42 2.41
5219 6069 6.615726 TCAAGGCTAGATAGGGTCTTACATTT 59.384 38.462 0.00 0.00 38.42 2.32
5318 6171 9.941325 ATATGTGGCAATGAAATTTGAAGTAAA 57.059 25.926 0.00 0.00 31.22 2.01
5319 6172 8.851541 ATGTGGCAATGAAATTTGAAGTAAAT 57.148 26.923 0.00 0.00 40.67 1.40
5378 6231 6.590292 ACACACTATAAAGACGAATGTCCTTG 59.410 38.462 0.00 0.00 46.74 3.61
5442 6316 7.565029 TCATCTCTAATTCCACCTTCTGTATCA 59.435 37.037 0.00 0.00 0.00 2.15
5446 6320 7.500992 TCTAATTCCACCTTCTGTATCATGAC 58.499 38.462 0.00 0.00 0.00 3.06
5452 6326 5.171476 CACCTTCTGTATCATGACGACTTT 58.829 41.667 0.00 0.00 0.00 2.66
5455 6329 4.186856 TCTGTATCATGACGACTTTGCA 57.813 40.909 0.00 0.00 0.00 4.08
5456 6330 4.565022 TCTGTATCATGACGACTTTGCAA 58.435 39.130 0.00 0.00 0.00 4.08
5461 6335 5.633830 ATCATGACGACTTTGCAAAAGAT 57.366 34.783 13.84 1.50 0.00 2.40
5468 6342 4.097892 ACGACTTTGCAAAAGATCAAACCT 59.902 37.500 13.84 0.00 0.00 3.50
5474 6348 3.118847 TGCAAAAGATCAAACCTGCACAA 60.119 39.130 0.00 0.00 35.02 3.33
5479 6353 6.607735 AAAGATCAAACCTGCACAAATTTG 57.392 33.333 16.67 16.67 34.11 2.32
5486 6360 8.140677 TCAAACCTGCACAAATTTGATTAAAG 57.859 30.769 24.64 12.89 36.42 1.85
5489 6363 6.223120 ACCTGCACAAATTTGATTAAAGTCC 58.777 36.000 24.64 2.88 0.00 3.85
5510 6384 8.644374 AGTCCAAGGTTTTTACATATAAAGCA 57.356 30.769 0.00 0.00 34.96 3.91
5512 6386 8.736244 GTCCAAGGTTTTTACATATAAAGCAGA 58.264 33.333 0.00 0.00 34.96 4.26
5513 6387 8.956426 TCCAAGGTTTTTACATATAAAGCAGAG 58.044 33.333 0.00 0.00 34.96 3.35
5520 6394 7.186804 TTTTACATATAAAGCAGAGCGAAAGC 58.813 34.615 0.00 0.00 43.74 3.51
5571 6446 2.363795 CCTGGTAGGCTCGGGTGA 60.364 66.667 0.00 0.00 0.00 4.02
5603 6478 7.913821 CACCAGACTGATGATTATTCATGTTTG 59.086 37.037 3.32 4.03 42.73 2.93
5724 6604 6.106673 CCTCGTGGTTGATGTTAACTAAGAT 58.893 40.000 7.22 0.00 31.63 2.40
5728 6608 7.546667 TCGTGGTTGATGTTAACTAAGATTACC 59.453 37.037 7.22 6.11 28.23 2.85
5729 6609 7.548075 CGTGGTTGATGTTAACTAAGATTACCT 59.452 37.037 7.22 0.00 31.36 3.08
5754 6634 3.753272 AGGCTATGACAACACAACATGTC 59.247 43.478 0.00 0.00 42.31 3.06
5767 6647 7.994425 ACACAACATGTCATGTAGGAATAAA 57.006 32.000 18.70 0.00 44.07 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.041940 CGGTGGGAGTGTGAACGC 61.042 66.667 0.00 0.00 0.00 4.84
14 15 3.379445 GCGTCTTCTCCGGTGGGA 61.379 66.667 0.00 0.00 41.08 4.37
19 20 4.493747 GTCGGGCGTCTTCTCCGG 62.494 72.222 0.00 0.00 43.54 5.14
21 22 4.493747 CCGTCGGGCGTCTTCTCC 62.494 72.222 2.34 0.00 39.32 3.71
35 36 2.908428 GAAAACCCAACGGCCCGT 60.908 61.111 1.02 1.02 43.97 5.28
39 40 2.338620 GCCTGAAAACCCAACGGC 59.661 61.111 0.00 0.00 0.00 5.68
46 47 1.265905 ACACGAAATCGCCTGAAAACC 59.734 47.619 2.15 0.00 44.43 3.27
51 52 0.032815 TCACACACGAAATCGCCTGA 59.967 50.000 2.15 0.00 44.43 3.86
53 54 0.949105 GGTCACACACGAAATCGCCT 60.949 55.000 2.15 0.00 44.43 5.52
65 66 2.357517 CTGACAGCCGGGTCACAC 60.358 66.667 1.27 0.00 42.56 3.82
67 68 2.048127 GACTGACAGCCGGGTCAC 60.048 66.667 1.27 0.69 42.56 3.67
68 69 3.311110 GGACTGACAGCCGGGTCA 61.311 66.667 1.27 8.43 45.06 4.02
77 78 2.261361 CGCCACATCGGACTGACA 59.739 61.111 0.00 0.00 36.56 3.58
94 95 2.939261 TTGAGGCCCGAGAACGTCC 61.939 63.158 0.00 0.00 37.88 4.79
95 96 1.737008 GTTGAGGCCCGAGAACGTC 60.737 63.158 0.00 0.00 37.88 4.34
98 99 2.484889 GATATGTTGAGGCCCGAGAAC 58.515 52.381 0.00 0.00 0.00 3.01
99 100 1.416401 GGATATGTTGAGGCCCGAGAA 59.584 52.381 0.00 0.00 0.00 2.87
100 101 1.048601 GGATATGTTGAGGCCCGAGA 58.951 55.000 0.00 0.00 0.00 4.04
102 103 1.745890 CGGATATGTTGAGGCCCGA 59.254 57.895 0.00 0.00 39.31 5.14
111 112 4.806286 GCCTAAATGTAGGGCGGATATGTT 60.806 45.833 11.15 0.00 46.42 2.71
112 113 3.307480 GCCTAAATGTAGGGCGGATATGT 60.307 47.826 11.15 0.00 46.42 2.29
121 122 5.338708 CCTCATATCCAGCCTAAATGTAGGG 60.339 48.000 11.15 0.00 46.42 3.53
131 132 0.769776 CCACCCCTCATATCCAGCCT 60.770 60.000 0.00 0.00 0.00 4.58
147 148 2.032681 GTCTGGGCTGACCACCAC 59.967 66.667 0.00 0.00 46.80 4.16
157 158 2.032681 AGCCTCAAACGTCTGGGC 59.967 61.111 11.98 11.98 42.74 5.36
161 162 1.134220 TCAAACCAGCCTCAAACGTCT 60.134 47.619 0.00 0.00 0.00 4.18
162 163 1.264288 CTCAAACCAGCCTCAAACGTC 59.736 52.381 0.00 0.00 0.00 4.34
163 164 1.308998 CTCAAACCAGCCTCAAACGT 58.691 50.000 0.00 0.00 0.00 3.99
164 165 0.593128 CCTCAAACCAGCCTCAAACG 59.407 55.000 0.00 0.00 0.00 3.60
172 176 1.743252 CCTCTCGCCTCAAACCAGC 60.743 63.158 0.00 0.00 0.00 4.85
174 178 1.415672 AACCCTCTCGCCTCAAACCA 61.416 55.000 0.00 0.00 0.00 3.67
176 180 0.034896 TCAACCCTCTCGCCTCAAAC 59.965 55.000 0.00 0.00 0.00 2.93
182 186 1.535896 GAAAAACTCAACCCTCTCGCC 59.464 52.381 0.00 0.00 0.00 5.54
183 187 2.218603 TGAAAAACTCAACCCTCTCGC 58.781 47.619 0.00 0.00 0.00 5.03
192 196 3.127895 CACTGACCGGTTGAAAAACTCAA 59.872 43.478 9.42 0.00 41.93 3.02
193 197 2.680841 CACTGACCGGTTGAAAAACTCA 59.319 45.455 9.42 0.00 0.00 3.41
195 199 2.681344 GTCACTGACCGGTTGAAAAACT 59.319 45.455 9.42 0.00 0.00 2.66
196 200 2.223409 GGTCACTGACCGGTTGAAAAAC 60.223 50.000 9.42 3.38 43.14 2.43
197 201 2.018515 GGTCACTGACCGGTTGAAAAA 58.981 47.619 9.42 0.00 43.14 1.94
199 203 3.390003 GGTCACTGACCGGTTGAAA 57.610 52.632 9.42 0.00 43.14 2.69
208 212 4.736896 GTCCGGCCGGTCACTGAC 62.737 72.222 41.57 27.98 36.47 3.51
225 236 1.078001 ATCTTAAACACCCGGGCGG 60.078 57.895 24.08 16.71 37.81 6.13
229 240 2.103537 AACCGATCTTAAACACCCGG 57.896 50.000 0.00 0.00 42.30 5.73
232 243 3.119955 GCCTCAAACCGATCTTAAACACC 60.120 47.826 0.00 0.00 0.00 4.16
234 245 2.739913 CGCCTCAAACCGATCTTAAACA 59.260 45.455 0.00 0.00 0.00 2.83
253 264 0.036294 GAGGGTCTATAATGGGGCGC 60.036 60.000 0.00 0.00 0.00 6.53
259 270 9.950496 ATTATGTGCTTAAGAGGGTCTATAATG 57.050 33.333 6.67 0.00 0.00 1.90
263 274 7.456269 AGCTATTATGTGCTTAAGAGGGTCTAT 59.544 37.037 6.67 0.00 35.86 1.98
264 275 6.782988 AGCTATTATGTGCTTAAGAGGGTCTA 59.217 38.462 6.67 0.00 35.86 2.59
265 276 5.604650 AGCTATTATGTGCTTAAGAGGGTCT 59.395 40.000 6.67 0.00 35.86 3.85
266 277 5.698545 CAGCTATTATGTGCTTAAGAGGGTC 59.301 44.000 6.67 0.00 37.44 4.46
267 278 5.131142 ACAGCTATTATGTGCTTAAGAGGGT 59.869 40.000 6.67 0.00 37.44 4.34
268 279 5.468072 CACAGCTATTATGTGCTTAAGAGGG 59.532 44.000 6.67 0.00 41.39 4.30
269 280 6.283694 TCACAGCTATTATGTGCTTAAGAGG 58.716 40.000 6.67 0.00 46.11 3.69
271 282 7.331026 ACTTCACAGCTATTATGTGCTTAAGA 58.669 34.615 6.67 0.00 46.11 2.10
279 290 6.356556 TGCCAATACTTCACAGCTATTATGT 58.643 36.000 0.00 0.00 0.00 2.29
280 291 6.866010 TGCCAATACTTCACAGCTATTATG 57.134 37.500 0.00 0.00 0.00 1.90
291 302 4.225042 TCTCTTTAGGCTGCCAATACTTCA 59.775 41.667 22.65 0.00 0.00 3.02
305 316 4.608948 ATCCCTACGCAATCTCTTTAGG 57.391 45.455 0.00 0.00 0.00 2.69
344 355 1.406887 CCATAACTGGAAGACACCGGG 60.407 57.143 6.32 0.00 46.37 5.73
375 386 3.224884 TGAATATGTGCGTCGTGAGAA 57.775 42.857 0.00 0.00 45.01 2.87
403 414 2.753055 TTTACGGCAGTCACATAGCA 57.247 45.000 0.00 0.00 0.00 3.49
450 463 3.414700 CGTGCCTGCGGAGTTCAC 61.415 66.667 13.86 13.86 0.00 3.18
807 820 2.438975 AGCGATCGACCGTACCCA 60.439 61.111 21.57 0.00 0.00 4.51
842 1091 1.344114 GATTGAGGAGCTAGGCAGAGG 59.656 57.143 0.00 0.00 0.00 3.69
899 1148 7.920682 GCTAGAAAGAGATCTAGTGAAAAGGAG 59.079 40.741 11.71 0.00 46.97 3.69
990 1243 1.226686 GAATCTGCATGCGCCGAGAT 61.227 55.000 14.09 12.55 34.64 2.75
1002 1255 4.276926 ACAAGAGAAACAACAGGAATCTGC 59.723 41.667 0.00 0.00 44.59 4.26
1010 1263 4.450419 CCAGAGCTACAAGAGAAACAACAG 59.550 45.833 0.00 0.00 0.00 3.16
1028 1281 4.053295 CCTTGCAACAAAAATCACCAGAG 58.947 43.478 0.00 0.00 0.00 3.35
1060 1313 7.404671 AACACACACAAGAGGAAATTAAACT 57.595 32.000 0.00 0.00 0.00 2.66
1065 1318 4.466015 ACCAAACACACACAAGAGGAAATT 59.534 37.500 0.00 0.00 0.00 1.82
1066 1319 4.023291 ACCAAACACACACAAGAGGAAAT 58.977 39.130 0.00 0.00 0.00 2.17
1068 1321 3.080300 ACCAAACACACACAAGAGGAA 57.920 42.857 0.00 0.00 0.00 3.36
1069 1322 2.799126 ACCAAACACACACAAGAGGA 57.201 45.000 0.00 0.00 0.00 3.71
1070 1323 2.099098 GGAACCAAACACACACAAGAGG 59.901 50.000 0.00 0.00 0.00 3.69
1071 1324 3.420839 GGAACCAAACACACACAAGAG 57.579 47.619 0.00 0.00 0.00 2.85
1124 1377 7.148457 GGGAAAGTATGTCTACAGCTTTTACAC 60.148 40.741 13.21 3.99 36.14 2.90
1134 1387 4.639310 GTCGAGAGGGAAAGTATGTCTACA 59.361 45.833 0.00 0.00 0.00 2.74
1140 1393 3.195825 ACCAAGTCGAGAGGGAAAGTATG 59.804 47.826 3.39 0.00 0.00 2.39
1169 1422 2.575532 AGGAGAACACACAACCACATG 58.424 47.619 0.00 0.00 0.00 3.21
1170 1423 2.951642 CAAGGAGAACACACAACCACAT 59.048 45.455 0.00 0.00 0.00 3.21
1171 1424 2.364632 CAAGGAGAACACACAACCACA 58.635 47.619 0.00 0.00 0.00 4.17
1172 1425 1.065551 GCAAGGAGAACACACAACCAC 59.934 52.381 0.00 0.00 0.00 4.16
1181 1434 0.463654 AACTGCGTGCAAGGAGAACA 60.464 50.000 26.40 2.55 33.57 3.18
1182 1435 0.040958 CAACTGCGTGCAAGGAGAAC 60.041 55.000 26.40 0.00 33.57 3.01
1194 1447 3.169924 CGCATGCAAGCAACTGCG 61.170 61.111 22.99 22.99 44.83 5.18
1195 1448 1.067199 GTACGCATGCAAGCAACTGC 61.067 55.000 19.57 6.17 42.95 4.40
1196 1449 0.454957 GGTACGCATGCAAGCAACTG 60.455 55.000 19.57 0.50 0.00 3.16
1197 1450 0.888736 TGGTACGCATGCAAGCAACT 60.889 50.000 19.57 0.00 0.00 3.16
1198 1451 0.454957 CTGGTACGCATGCAAGCAAC 60.455 55.000 19.57 10.92 0.00 4.17
1199 1452 1.875262 CTGGTACGCATGCAAGCAA 59.125 52.632 19.57 0.00 0.00 3.91
1200 1453 2.689785 GCTGGTACGCATGCAAGCA 61.690 57.895 19.57 18.52 0.00 3.91
1201 1454 1.089481 TAGCTGGTACGCATGCAAGC 61.089 55.000 19.57 16.68 0.00 4.01
1227 1480 3.471495 CACCGAAACCTTGTGCTAATC 57.529 47.619 0.00 0.00 0.00 1.75
1271 1524 5.434352 TTCATAGATCTACCCTCGAAACG 57.566 43.478 4.10 0.00 0.00 3.60
1272 1525 7.040473 TCTTTCATAGATCTACCCTCGAAAC 57.960 40.000 4.10 0.00 0.00 2.78
1276 1529 7.461182 AGAATCTTTCATAGATCTACCCTCG 57.539 40.000 4.10 0.00 42.90 4.63
1396 1804 0.740868 GCTGGATCTAGTTGTGCGCA 60.741 55.000 5.66 5.66 0.00 6.09
1397 1805 1.432270 GGCTGGATCTAGTTGTGCGC 61.432 60.000 8.00 0.00 0.00 6.09
1398 1806 0.108186 TGGCTGGATCTAGTTGTGCG 60.108 55.000 8.00 0.00 0.00 5.34
1399 1807 2.113860 TTGGCTGGATCTAGTTGTGC 57.886 50.000 8.00 0.00 0.00 4.57
1400 1808 5.028549 ACTATTGGCTGGATCTAGTTGTG 57.971 43.478 8.00 0.00 0.00 3.33
1401 1809 5.900123 AGTACTATTGGCTGGATCTAGTTGT 59.100 40.000 8.00 0.00 0.00 3.32
1412 1820 7.492524 TGAATCAAGTCTAGTACTATTGGCTG 58.507 38.462 12.57 4.60 37.50 4.85
1418 1826 8.958506 ACGAGTTTGAATCAAGTCTAGTACTAT 58.041 33.333 2.33 0.00 37.50 2.12
1445 1853 6.691508 AGACCAAAATTCAGTTGCCTAAATC 58.308 36.000 0.00 0.00 0.00 2.17
1454 1862 7.201911 CCTGAACCTTTAGACCAAAATTCAGTT 60.202 37.037 13.86 0.00 41.95 3.16
1488 1896 5.178797 ACCTTGATGAACTTGATTAGGACG 58.821 41.667 0.00 0.00 0.00 4.79
1501 1909 7.795047 TGCTGAGAATAATAGACCTTGATGAA 58.205 34.615 0.00 0.00 0.00 2.57
1507 1915 5.361285 ACGTCTGCTGAGAATAATAGACCTT 59.639 40.000 0.00 0.00 32.94 3.50
1509 1917 5.189659 ACGTCTGCTGAGAATAATAGACC 57.810 43.478 0.00 0.00 32.94 3.85
1510 1918 6.266323 TGAACGTCTGCTGAGAATAATAGAC 58.734 40.000 0.00 0.00 33.15 2.59
1511 1919 6.451064 TGAACGTCTGCTGAGAATAATAGA 57.549 37.500 0.00 0.00 0.00 1.98
1512 1920 6.531594 TGTTGAACGTCTGCTGAGAATAATAG 59.468 38.462 0.00 0.00 0.00 1.73
1513 1921 6.394809 TGTTGAACGTCTGCTGAGAATAATA 58.605 36.000 0.00 0.00 0.00 0.98
1514 1922 5.237815 TGTTGAACGTCTGCTGAGAATAAT 58.762 37.500 0.00 0.00 0.00 1.28
1515 1923 4.627058 TGTTGAACGTCTGCTGAGAATAA 58.373 39.130 0.00 0.00 0.00 1.40
1525 1933 2.032030 GTGGGTTGATGTTGAACGTCTG 60.032 50.000 17.45 0.00 35.24 3.51
1636 2070 7.775053 AAGAATACAACAAAGATGGCCTTAA 57.225 32.000 3.32 0.00 34.00 1.85
1637 2071 7.450014 TGAAAGAATACAACAAAGATGGCCTTA 59.550 33.333 3.32 0.00 34.00 2.69
1641 2075 6.587608 CCTTGAAAGAATACAACAAAGATGGC 59.412 38.462 0.00 0.00 0.00 4.40
1646 2080 9.884465 CTCTAACCTTGAAAGAATACAACAAAG 57.116 33.333 0.00 0.00 0.00 2.77
1672 2106 0.323360 TCCCCATGGTAGCAAGCAAC 60.323 55.000 11.73 0.00 36.53 4.17
1876 2310 2.612221 GGATATTGGGTAGCTACGTGCC 60.612 54.545 17.48 13.38 44.23 5.01
1878 2312 2.925306 GCGGATATTGGGTAGCTACGTG 60.925 54.545 17.48 1.13 0.00 4.49
1937 2371 2.302260 AGTAGCATGCTAGCTTCTCGA 58.698 47.619 27.54 1.84 43.70 4.04
1971 2405 6.666113 ACCAAAAGAAAGGGAAGAAACTAACA 59.334 34.615 0.00 0.00 0.00 2.41
1972 2406 7.108841 ACCAAAAGAAAGGGAAGAAACTAAC 57.891 36.000 0.00 0.00 0.00 2.34
2021 2455 3.455990 AACACAAGCACATCATTGCAA 57.544 38.095 0.00 0.00 45.62 4.08
2034 2468 4.003648 GGGGTAGACAGATCAAACACAAG 58.996 47.826 0.00 0.00 0.00 3.16
2055 2490 2.760650 TGGCCTCGCAGACATATATAGG 59.239 50.000 3.32 0.00 0.00 2.57
2056 2491 4.662468 ATGGCCTCGCAGACATATATAG 57.338 45.455 3.32 0.00 0.00 1.31
2057 2492 4.383010 CCAATGGCCTCGCAGACATATATA 60.383 45.833 3.32 0.00 0.00 0.86
2058 2493 3.603532 CAATGGCCTCGCAGACATATAT 58.396 45.455 3.32 0.00 0.00 0.86
2059 2494 2.289631 CCAATGGCCTCGCAGACATATA 60.290 50.000 3.32 0.00 0.00 0.86
2060 2495 1.544093 CCAATGGCCTCGCAGACATAT 60.544 52.381 3.32 0.00 0.00 1.78
2074 2509 0.892755 ACAGCATGCTTGACCAATGG 59.107 50.000 19.98 5.86 42.53 3.16
2119 2554 1.002430 ACAGTGGACACGCATGAGATT 59.998 47.619 2.50 0.00 36.20 2.40
2124 2559 0.879839 TGTGACAGTGGACACGCATG 60.880 55.000 14.65 0.00 41.62 4.06
2136 2571 7.482654 TCTAGAGTTCATTTTTGTGTGACAG 57.517 36.000 0.00 0.00 0.00 3.51
2138 2573 7.852945 CACTTCTAGAGTTCATTTTTGTGTGAC 59.147 37.037 0.00 0.00 36.10 3.67
2242 2680 4.517832 GGTTAATAGCCTGGGATTAAACCG 59.482 45.833 0.00 0.00 31.68 4.44
2295 2734 6.534436 GCAGAAGCATATATGACATGGTCTAG 59.466 42.308 17.10 5.41 41.58 2.43
2296 2735 6.212187 AGCAGAAGCATATATGACATGGTCTA 59.788 38.462 17.10 0.00 45.49 2.59
2297 2736 5.012871 AGCAGAAGCATATATGACATGGTCT 59.987 40.000 17.10 5.83 45.49 3.85
2298 2737 5.121925 CAGCAGAAGCATATATGACATGGTC 59.878 44.000 17.10 3.81 45.49 4.02
2299 2738 5.001874 CAGCAGAAGCATATATGACATGGT 58.998 41.667 17.10 10.77 45.49 3.55
2300 2739 5.001874 ACAGCAGAAGCATATATGACATGG 58.998 41.667 17.10 3.69 45.49 3.66
2301 2740 5.469084 ACACAGCAGAAGCATATATGACATG 59.531 40.000 17.10 9.50 45.49 3.21
2302 2741 5.469084 CACACAGCAGAAGCATATATGACAT 59.531 40.000 17.10 1.11 45.49 3.06
2303 2742 4.812626 CACACAGCAGAAGCATATATGACA 59.187 41.667 17.10 0.00 45.49 3.58
2304 2743 4.212847 CCACACAGCAGAAGCATATATGAC 59.787 45.833 17.10 7.84 45.49 3.06
2401 2851 8.502105 TTTCCCGGCTTGTTAAAAATTAAAAA 57.498 26.923 0.00 0.00 0.00 1.94
2405 2855 7.171678 CACAATTTCCCGGCTTGTTAAAAATTA 59.828 33.333 0.00 0.00 30.99 1.40
2408 2858 4.811557 CACAATTTCCCGGCTTGTTAAAAA 59.188 37.500 0.00 0.00 30.99 1.94
2505 2955 9.043079 GCTAACTAAAGTTTAGCTTATACCAGG 57.957 37.037 20.31 8.14 39.31 4.45
2526 2976 9.601217 TCATTTTCCATCTAAAGACTAGCTAAC 57.399 33.333 0.00 0.00 0.00 2.34
2560 3064 0.478072 TGAACTCACCCAATGCACCT 59.522 50.000 0.00 0.00 0.00 4.00
2586 3090 6.259167 ACGTTTTCAAAGCTTGTACATCAGTA 59.741 34.615 0.00 0.00 0.00 2.74
2587 3091 5.065988 ACGTTTTCAAAGCTTGTACATCAGT 59.934 36.000 0.00 0.00 0.00 3.41
2588 3092 5.510671 ACGTTTTCAAAGCTTGTACATCAG 58.489 37.500 0.00 0.00 0.00 2.90
2589 3093 5.493133 ACGTTTTCAAAGCTTGTACATCA 57.507 34.783 0.00 0.00 0.00 3.07
2590 3094 8.440833 AGTATACGTTTTCAAAGCTTGTACATC 58.559 33.333 0.00 0.00 0.00 3.06
2674 3179 6.918569 TGAACGTACACATATTTGTTTTTGGG 59.081 34.615 0.00 0.00 32.34 4.12
2675 3180 7.916128 TGAACGTACACATATTTGTTTTTGG 57.084 32.000 0.00 0.00 32.34 3.28
2702 3207 6.674037 GCACATACTTCTTGAATGCAGTACTG 60.674 42.308 18.93 18.93 0.00 2.74
2710 3215 4.877823 TGCCTAGCACATACTTCTTGAATG 59.122 41.667 0.00 0.00 31.71 2.67
2711 3216 5.102953 TGCCTAGCACATACTTCTTGAAT 57.897 39.130 0.00 0.00 31.71 2.57
2712 3217 4.551702 TGCCTAGCACATACTTCTTGAA 57.448 40.909 0.00 0.00 31.71 2.69
2782 3292 4.042311 TGATGAAGTGCCCAAACCTACTAA 59.958 41.667 0.00 0.00 0.00 2.24
2792 3302 1.630223 TGCATTTGATGAAGTGCCCA 58.370 45.000 9.74 0.00 36.79 5.36
2794 3304 9.132521 GTATAATAATGCATTTGATGAAGTGCC 57.867 33.333 18.75 0.00 36.79 5.01
2899 3409 2.038387 AGCGTTGTTCCAGAAAGTGT 57.962 45.000 0.00 0.00 0.00 3.55
2914 3428 5.673337 ATGATGCGTTCAAATTATAGCGT 57.327 34.783 0.00 0.00 38.03 5.07
2915 3429 5.909054 ACAATGATGCGTTCAAATTATAGCG 59.091 36.000 0.00 0.00 38.03 4.26
2929 3451 6.803320 GGATGAATTATACCAACAATGATGCG 59.197 38.462 0.00 0.00 0.00 4.73
2960 3482 7.433131 GTGTACACTGCCATCAATTAATTCATG 59.567 37.037 18.92 5.15 0.00 3.07
2968 3505 4.019792 TGAGTGTACACTGCCATCAATT 57.980 40.909 32.51 4.93 42.66 2.32
3000 3537 5.989477 AGGCAAATGCAGACTATAGTAACA 58.011 37.500 5.09 4.96 44.36 2.41
3001 3538 6.763610 AGAAGGCAAATGCAGACTATAGTAAC 59.236 38.462 5.09 0.00 44.36 2.50
3011 3548 4.281435 TGAAAATGAGAAGGCAAATGCAGA 59.719 37.500 7.80 0.00 44.36 4.26
3082 3619 7.703621 GCAAAGACAACTGAAGGTATACGTATA 59.296 37.037 11.27 11.27 0.00 1.47
3083 3620 6.534079 GCAAAGACAACTGAAGGTATACGTAT 59.466 38.462 13.54 13.54 0.00 3.06
3086 3623 4.688879 TGCAAAGACAACTGAAGGTATACG 59.311 41.667 0.00 0.00 0.00 3.06
3087 3624 5.701290 ACTGCAAAGACAACTGAAGGTATAC 59.299 40.000 0.00 0.00 0.00 1.47
3098 3636 1.082756 CGGCGACTGCAAAGACAAC 60.083 57.895 0.00 0.00 45.35 3.32
3138 3676 3.138304 TGACGCATCCAAGCCATTATAC 58.862 45.455 0.00 0.00 0.00 1.47
3212 3761 1.262417 GAACGAAACTCGAAACCACCC 59.738 52.381 2.59 0.00 43.74 4.61
3223 3772 0.586319 CGGTGCACATGAACGAAACT 59.414 50.000 20.43 0.00 0.00 2.66
3248 3797 4.202398 ACATATCCACATCCACATCTCACC 60.202 45.833 0.00 0.00 0.00 4.02
3327 3904 1.000843 GGTTTCCTTCACCATGCAACC 59.999 52.381 0.00 0.00 34.04 3.77
3328 3905 1.000843 GGGTTTCCTTCACCATGCAAC 59.999 52.381 0.00 0.00 35.80 4.17
3363 3940 2.124942 GAGGAAAGGGAGCAGGCG 60.125 66.667 0.00 0.00 0.00 5.52
3427 4004 1.725066 TGCGTGCATGCATCTGATG 59.275 52.632 29.30 13.26 40.62 3.07
3428 4005 4.228899 TGCGTGCATGCATCTGAT 57.771 50.000 29.30 0.00 40.62 2.90
3444 4021 4.450122 GAGGCATGTGCGTGCGTG 62.450 66.667 15.03 0.40 45.97 5.34
3445 4022 4.687215 AGAGGCATGTGCGTGCGT 62.687 61.111 10.78 10.78 45.97 5.24
3446 4023 2.839324 GAAAGAGGCATGTGCGTGCG 62.839 60.000 4.78 0.00 45.97 5.34
3447 4024 1.154150 GAAAGAGGCATGTGCGTGC 60.154 57.895 4.78 7.78 44.31 5.34
3448 4025 1.725641 TAGAAAGAGGCATGTGCGTG 58.274 50.000 4.78 0.00 43.26 5.34
3449 4026 2.283298 CATAGAAAGAGGCATGTGCGT 58.717 47.619 0.00 0.00 43.26 5.24
3450 4027 2.283298 ACATAGAAAGAGGCATGTGCG 58.717 47.619 0.00 0.00 43.26 5.34
3451 4028 3.539604 AGACATAGAAAGAGGCATGTGC 58.460 45.455 0.00 0.00 41.14 4.57
3452 4029 5.021033 AGAGACATAGAAAGAGGCATGTG 57.979 43.478 0.00 0.00 31.94 3.21
3453 4030 4.961730 AGAGAGACATAGAAAGAGGCATGT 59.038 41.667 0.00 0.00 34.41 3.21
3580 4174 1.583967 GATCGTCGTCCTCGTGCTG 60.584 63.158 0.00 0.00 38.33 4.41
3683 4277 4.977393 AACAGCGTGTTTGGGACT 57.023 50.000 0.00 0.00 37.26 3.85
3723 4320 5.171337 GCTGTGTTTTGTACTGAATCAAACG 59.829 40.000 0.00 0.00 34.05 3.60
3724 4321 6.265577 AGCTGTGTTTTGTACTGAATCAAAC 58.734 36.000 0.00 0.00 34.05 2.93
3727 4324 5.007626 GTGAGCTGTGTTTTGTACTGAATCA 59.992 40.000 0.00 0.00 0.00 2.57
3728 4325 5.444122 GTGAGCTGTGTTTTGTACTGAATC 58.556 41.667 0.00 0.00 0.00 2.52
3729 4326 4.024893 CGTGAGCTGTGTTTTGTACTGAAT 60.025 41.667 0.00 0.00 0.00 2.57
3732 4329 2.032894 CCGTGAGCTGTGTTTTGTACTG 60.033 50.000 0.00 0.00 0.00 2.74
3742 4341 2.356313 AGAACGCCGTGAGCTGTG 60.356 61.111 0.00 0.00 40.39 3.66
3786 4385 6.401903 CGGACACAGTTATATAGTACTAGCGG 60.402 46.154 8.85 0.53 0.00 5.52
3826 4426 2.363788 TCTACAACAGGCGATCACAC 57.636 50.000 0.00 0.00 0.00 3.82
3828 4428 4.868171 TGTTAATCTACAACAGGCGATCAC 59.132 41.667 0.00 0.00 32.32 3.06
3864 4469 5.292765 CGACCACATCAGATAGCTATTGTT 58.707 41.667 7.87 1.44 0.00 2.83
3884 4523 4.637977 ACCAGTTACTAGTAGCTAACCGAC 59.362 45.833 17.69 4.23 0.00 4.79
3913 4552 7.007367 GTGTACGTACGAAATCAAGTAAATCGA 59.993 37.037 24.41 0.00 37.27 3.59
3929 4568 3.141002 AGTATTGCTGGTGTACGTACG 57.859 47.619 20.18 15.01 0.00 3.67
3930 4569 4.925054 TGAAAGTATTGCTGGTGTACGTAC 59.075 41.667 18.90 18.90 0.00 3.67
4020 4659 2.358737 CGGCCTGGTGACTCCAAC 60.359 66.667 0.00 0.00 46.59 3.77
4021 4660 2.525629 TCGGCCTGGTGACTCCAA 60.526 61.111 0.00 0.00 46.59 3.53
4222 4864 8.853077 ACTAGTACTGTACATGTAAGTGTGTA 57.147 34.615 19.27 12.38 33.62 2.90
4226 4868 9.687210 TGAAAACTAGTACTGTACATGTAAGTG 57.313 33.333 19.27 12.42 0.00 3.16
4231 4873 6.154445 CGGTGAAAACTAGTACTGTACATGT 58.846 40.000 19.27 13.68 0.00 3.21
4239 4881 4.879598 CTGGAACGGTGAAAACTAGTACT 58.120 43.478 0.00 0.00 0.00 2.73
4254 4896 6.307155 GTTAACTTGATTGATGACTGGAACG 58.693 40.000 0.00 0.00 0.00 3.95
4260 4902 9.125026 GGATATTGGTTAACTTGATTGATGACT 57.875 33.333 5.42 0.00 0.00 3.41
4269 4911 7.998383 AGTGCATATGGATATTGGTTAACTTGA 59.002 33.333 5.42 0.00 0.00 3.02
4270 4912 8.169977 AGTGCATATGGATATTGGTTAACTTG 57.830 34.615 5.42 0.00 0.00 3.16
4271 4913 8.766994 AAGTGCATATGGATATTGGTTAACTT 57.233 30.769 5.42 0.00 0.00 2.66
4272 4914 8.766994 AAAGTGCATATGGATATTGGTTAACT 57.233 30.769 5.42 0.00 0.00 2.24
4273 4915 9.248291 CAAAAGTGCATATGGATATTGGTTAAC 57.752 33.333 4.56 0.00 0.00 2.01
4280 4922 5.278463 GCGACCAAAAGTGCATATGGATATT 60.278 40.000 14.51 0.00 36.75 1.28
4355 4997 5.221702 CCGGTATATGCATATGGATGGATGA 60.222 44.000 26.21 2.94 43.36 2.92
4356 4998 4.999311 CCGGTATATGCATATGGATGGATG 59.001 45.833 26.21 9.17 43.36 3.51
4359 5001 4.422073 ACCGGTATATGCATATGGATGG 57.578 45.455 26.21 22.17 33.26 3.51
4360 5002 5.294306 GTCAACCGGTATATGCATATGGATG 59.706 44.000 26.21 21.72 36.02 3.51
4389 5091 9.135189 CACCAGGAGGATAATCATATTTTGAAA 57.865 33.333 0.00 0.00 36.68 2.69
4391 5093 6.716628 GCACCAGGAGGATAATCATATTTTGA 59.283 38.462 0.00 0.00 37.24 2.69
4393 5095 5.707298 CGCACCAGGAGGATAATCATATTTT 59.293 40.000 0.00 0.00 38.69 1.82
4396 5098 3.840666 ACGCACCAGGAGGATAATCATAT 59.159 43.478 0.00 0.00 38.69 1.78
4400 5102 2.622064 AACGCACCAGGAGGATAATC 57.378 50.000 0.00 0.00 38.69 1.75
4409 5111 0.887933 ATTAGCCAAAACGCACCAGG 59.112 50.000 0.00 0.00 0.00 4.45
4410 5112 1.465689 CGATTAGCCAAAACGCACCAG 60.466 52.381 0.00 0.00 0.00 4.00
4411 5113 0.519519 CGATTAGCCAAAACGCACCA 59.480 50.000 0.00 0.00 0.00 4.17
4412 5114 0.800012 TCGATTAGCCAAAACGCACC 59.200 50.000 0.00 0.00 0.00 5.01
4413 5115 1.465187 GGTCGATTAGCCAAAACGCAC 60.465 52.381 0.00 0.00 0.00 5.34
4414 5116 0.800012 GGTCGATTAGCCAAAACGCA 59.200 50.000 0.00 0.00 0.00 5.24
4415 5117 0.098200 GGGTCGATTAGCCAAAACGC 59.902 55.000 0.00 0.00 45.71 4.84
4422 5124 1.202663 GGAAGGAAGGGTCGATTAGCC 60.203 57.143 0.00 0.00 46.88 3.93
4423 5125 1.763545 AGGAAGGAAGGGTCGATTAGC 59.236 52.381 0.00 0.00 0.00 3.09
4424 5126 3.301274 AGAGGAAGGAAGGGTCGATTAG 58.699 50.000 0.00 0.00 0.00 1.73
4425 5127 3.399952 AGAGGAAGGAAGGGTCGATTA 57.600 47.619 0.00 0.00 0.00 1.75
4426 5128 2.237392 CAAGAGGAAGGAAGGGTCGATT 59.763 50.000 0.00 0.00 0.00 3.34
4427 5129 1.834263 CAAGAGGAAGGAAGGGTCGAT 59.166 52.381 0.00 0.00 0.00 3.59
4428 5130 1.267121 CAAGAGGAAGGAAGGGTCGA 58.733 55.000 0.00 0.00 0.00 4.20
4429 5131 0.977395 ACAAGAGGAAGGAAGGGTCG 59.023 55.000 0.00 0.00 0.00 4.79
4430 5132 2.372172 TGAACAAGAGGAAGGAAGGGTC 59.628 50.000 0.00 0.00 0.00 4.46
4431 5133 2.418669 TGAACAAGAGGAAGGAAGGGT 58.581 47.619 0.00 0.00 0.00 4.34
4432 5134 3.615155 GATGAACAAGAGGAAGGAAGGG 58.385 50.000 0.00 0.00 0.00 3.95
4433 5135 3.265791 CGATGAACAAGAGGAAGGAAGG 58.734 50.000 0.00 0.00 0.00 3.46
4501 5203 2.362397 GGCTCGGAGATACATGTTCTCA 59.638 50.000 25.73 14.03 41.16 3.27
4534 5236 0.179119 GAAGCATGCAGGAATGTGCC 60.179 55.000 21.98 0.00 43.28 5.01
4535 5237 0.815734 AGAAGCATGCAGGAATGTGC 59.184 50.000 21.98 0.00 44.27 4.57
4536 5238 2.089201 TGAGAAGCATGCAGGAATGTG 58.911 47.619 21.98 0.00 0.00 3.21
4537 5239 2.290768 ACTGAGAAGCATGCAGGAATGT 60.291 45.455 21.98 8.89 34.05 2.71
4538 5240 2.097629 CACTGAGAAGCATGCAGGAATG 59.902 50.000 21.98 8.23 34.05 2.67
4559 5392 4.863131 CCAGACGATCTTTGGTTACAGTAC 59.137 45.833 0.00 0.00 0.00 2.73
4579 5412 9.823647 ATTACAACTATTAGAGATCAACACCAG 57.176 33.333 0.00 0.00 0.00 4.00
4602 5435 2.182014 CGACGATCGAGCAACACATTA 58.818 47.619 24.34 0.00 43.74 1.90
4606 5439 2.789203 GCCGACGATCGAGCAACAC 61.789 63.158 24.34 0.25 43.74 3.32
4731 5567 0.907704 TGCCTGGTGGTGGTAGTAGG 60.908 60.000 0.00 0.00 35.27 3.18
4869 5712 1.079503 GGTCGATCAGTTCAGTTGGC 58.920 55.000 0.00 0.00 0.00 4.52
4935 5778 4.971125 GCGCGGGTGCTATCTCCC 62.971 72.222 8.83 0.00 41.52 4.30
4953 5796 0.683179 AGGACATGGATCGGTCGACA 60.683 55.000 18.91 0.00 34.87 4.35
4959 5802 3.757270 ACTAGTAGAGGACATGGATCGG 58.243 50.000 3.59 0.00 0.00 4.18
4988 5831 3.549070 CGTACGTAGGTTATCCAGCAAAC 59.451 47.826 7.22 0.00 35.89 2.93
5018 5861 5.593968 CCGCAATACAGTACTGTGGTAATA 58.406 41.667 33.77 16.50 44.63 0.98
5100 5950 1.028330 TACTCACTAGCCACGTCCCG 61.028 60.000 0.00 0.00 0.00 5.14
5135 5985 2.042162 AGGCCAGGTCATTCTTCACAAT 59.958 45.455 5.01 0.00 0.00 2.71
5286 6139 9.407380 TCAAATTTCATTGCCACATATACTAGT 57.593 29.630 0.00 0.00 0.00 2.57
5290 6143 8.931385 ACTTCAAATTTCATTGCCACATATAC 57.069 30.769 0.00 0.00 0.00 1.47
5391 6244 8.237811 ACAACTTCAAGGTCTTCAATGTAATT 57.762 30.769 0.00 0.00 36.63 1.40
5392 6245 7.502226 TGACAACTTCAAGGTCTTCAATGTAAT 59.498 33.333 0.00 0.00 32.84 1.89
5398 6251 5.684704 AGATGACAACTTCAAGGTCTTCAA 58.315 37.500 10.41 0.00 37.92 2.69
5442 6316 5.437289 TTGATCTTTTGCAAAGTCGTCAT 57.563 34.783 12.41 0.00 0.00 3.06
5446 6320 4.442073 CAGGTTTGATCTTTTGCAAAGTCG 59.558 41.667 12.41 5.51 34.95 4.18
5452 6326 2.429971 TGTGCAGGTTTGATCTTTTGCA 59.570 40.909 0.00 0.80 39.03 4.08
5455 6329 6.822676 TCAAATTTGTGCAGGTTTGATCTTTT 59.177 30.769 17.47 0.00 36.11 2.27
5456 6330 6.347696 TCAAATTTGTGCAGGTTTGATCTTT 58.652 32.000 17.47 0.00 36.11 2.52
5461 6335 7.768120 ACTTTAATCAAATTTGTGCAGGTTTGA 59.232 29.630 17.47 14.30 42.61 2.69
5468 6342 6.705381 CCTTGGACTTTAATCAAATTTGTGCA 59.295 34.615 17.47 5.55 0.00 4.57
5486 6360 8.736244 TCTGCTTTATATGTAAAAACCTTGGAC 58.264 33.333 0.00 0.00 29.86 4.02
5489 6363 7.429340 CGCTCTGCTTTATATGTAAAAACCTTG 59.571 37.037 0.00 0.00 29.86 3.61
5500 6374 3.812053 AGGCTTTCGCTCTGCTTTATATG 59.188 43.478 0.00 0.00 36.09 1.78
5510 6384 1.967319 TTGAAACAGGCTTTCGCTCT 58.033 45.000 0.00 0.00 36.09 4.09
5512 6386 2.223805 CCTTTTGAAACAGGCTTTCGCT 60.224 45.455 0.00 0.00 36.09 4.93
5513 6387 2.127251 CCTTTTGAAACAGGCTTTCGC 58.873 47.619 0.00 0.00 0.00 4.70
5520 6394 3.490249 GGTCGAAACCCTTTTGAAACAGG 60.490 47.826 0.00 0.91 39.93 4.00
5545 6420 3.470888 CCTACCAGGGGCAGGTCG 61.471 72.222 0.00 0.00 40.54 4.79
5557 6432 0.672711 GTTGTTCACCCGAGCCTACC 60.673 60.000 0.00 0.00 0.00 3.18
5571 6446 3.795688 ATCATCAGTCTGGTGGTTGTT 57.204 42.857 13.22 0.00 0.00 2.83
5709 6589 7.635089 GCCTGGAGGTAATCTTAGTTAACATCA 60.635 40.741 8.61 0.00 37.57 3.07
5710 6590 6.706716 GCCTGGAGGTAATCTTAGTTAACATC 59.293 42.308 8.61 0.00 37.57 3.06
5724 6604 3.055385 GTGTTGTCATAGCCTGGAGGTAA 60.055 47.826 0.00 0.00 37.57 2.85
5728 6608 2.744202 GTTGTGTTGTCATAGCCTGGAG 59.256 50.000 0.00 0.00 0.00 3.86
5729 6609 2.105649 TGTTGTGTTGTCATAGCCTGGA 59.894 45.455 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.