Multiple sequence alignment - TraesCS1A01G262300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G262300 chr1A 100.000 5749 0 0 1 5749 456945244 456939496 0.000000e+00 10617.0
1 TraesCS1A01G262300 chr1D 93.734 4979 185 41 359 5239 356158504 356153555 0.000000e+00 7348.0
2 TraesCS1A01G262300 chr1D 81.188 202 33 3 1 201 356159832 356159635 2.140000e-34 158.0
3 TraesCS1A01G262300 chr1B 91.939 5347 260 71 2 5294 478726236 478721007 0.000000e+00 7328.0
4 TraesCS1A01G262300 chr1B 82.645 363 32 18 5396 5749 478720949 478720609 5.630000e-75 292.0
5 TraesCS1A01G262300 chr4D 90.155 193 15 1 5561 5749 401416474 401416282 1.240000e-61 248.0
6 TraesCS1A01G262300 chr6B 90.052 191 15 2 5563 5749 545223603 545223793 1.600000e-60 244.0
7 TraesCS1A01G262300 chr3D 89.637 193 16 1 5561 5749 395669710 395669902 5.760000e-60 243.0
8 TraesCS1A01G262300 chr7D 88.601 193 18 1 5561 5749 70150753 70150561 1.250000e-56 231.0
9 TraesCS1A01G262300 chr7D 86.000 100 10 3 5423 5519 175645679 175645581 2.830000e-18 104.0
10 TraesCS1A01G262300 chr5D 88.144 194 18 2 5561 5749 437083373 437083566 5.800000e-55 226.0
11 TraesCS1A01G262300 chr2B 90.299 134 13 0 5616 5749 32632222 32632355 5.920000e-40 176.0
12 TraesCS1A01G262300 chr2B 88.421 95 7 4 5442 5532 32631927 32632021 1.690000e-20 111.0
13 TraesCS1A01G262300 chr3B 92.000 75 5 1 3873 3947 676272450 676272377 2.830000e-18 104.0
14 TraesCS1A01G262300 chr5A 82.759 116 14 5 5423 5532 668189432 668189317 1.320000e-16 99.0
15 TraesCS1A01G262300 chr7B 88.608 79 9 0 5441 5519 140931130 140931052 4.740000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G262300 chr1A 456939496 456945244 5748 True 10617 10617 100.000 1 5749 1 chr1A.!!$R1 5748
1 TraesCS1A01G262300 chr1D 356153555 356159832 6277 True 3753 7348 87.461 1 5239 2 chr1D.!!$R1 5238
2 TraesCS1A01G262300 chr1B 478720609 478726236 5627 True 3810 7328 87.292 2 5749 2 chr1B.!!$R1 5747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 1529 0.034059 CTCACAGACCATATCGCCCC 59.966 60.000 0.0 0.0 0.00 5.80 F
920 1989 0.108019 GGCCTCGGGGGTATAAAGTG 59.892 60.000 1.9 0.0 37.43 3.16 F
1395 2464 0.323087 AGGTAATTTCCACCACCGGC 60.323 55.000 0.0 0.0 38.62 6.13 F
2146 3249 0.535102 AGGTTTTCCAGACAGCGTGG 60.535 55.000 0.0 0.0 43.73 4.94 F
3397 4523 2.989571 AGAAACCTTTCCTCCTGGTCAT 59.010 45.455 0.0 0.0 37.92 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 3056 0.389948 GTGTCTCCGCACCAACTAGG 60.390 60.0 0.00 0.0 45.67 3.02 R
2029 3132 2.076207 TCAAGCCCCCATGATCAATG 57.924 50.0 0.00 0.0 35.89 2.82 R
2822 3945 2.360165 GCAGCAACATTCTGAATAGGGG 59.640 50.0 1.98 0.0 33.54 4.79 R
3958 5108 2.039084 ACCATGGAGGACAAGACTCAAC 59.961 50.0 21.47 0.0 41.22 3.18 R
5298 6460 0.039165 TCTGCGTGCAGTCAGTAGTG 60.039 55.0 20.33 0.0 43.96 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.440569 GCGAGAGAGTTGTCTGCGC 61.441 63.158 0.00 0.00 42.48 6.09
32 33 1.803519 GAGAGAGTTGTCTGCGCCG 60.804 63.158 4.18 0.00 30.97 6.46
41 42 2.032634 GTCTGCGCCGGTCATTCAA 61.033 57.895 4.18 0.00 0.00 2.69
44 45 0.739462 CTGCGCCGGTCATTCAACTA 60.739 55.000 4.18 0.00 0.00 2.24
61 62 2.726821 ACTATGACCCACCATTTGCAG 58.273 47.619 0.00 0.00 0.00 4.41
114 116 1.521681 GACCCATGTAGCACTCGGC 60.522 63.158 0.00 0.00 45.30 5.54
129 131 4.389576 GGCGTTTGCAGCTGACCG 62.390 66.667 20.43 13.66 45.35 4.79
130 132 3.649986 GCGTTTGCAGCTGACCGT 61.650 61.111 20.43 0.00 42.15 4.83
132 134 1.355210 CGTTTGCAGCTGACCGTTT 59.645 52.632 20.43 0.00 0.00 3.60
133 135 0.248458 CGTTTGCAGCTGACCGTTTT 60.248 50.000 20.43 0.00 0.00 2.43
134 136 1.797348 CGTTTGCAGCTGACCGTTTTT 60.797 47.619 20.43 0.00 0.00 1.94
135 137 1.587946 GTTTGCAGCTGACCGTTTTTG 59.412 47.619 20.43 0.00 0.00 2.44
136 138 0.527385 TTGCAGCTGACCGTTTTTGC 60.527 50.000 20.43 0.00 0.00 3.68
144 146 1.539776 GACCGTTTTTGCTTGCGCTG 61.540 55.000 9.73 2.28 36.97 5.18
145 147 2.302230 CCGTTTTTGCTTGCGCTGG 61.302 57.895 9.73 1.88 36.97 4.85
150 152 0.805322 TTTTGCTTGCGCTGGTGTTG 60.805 50.000 9.73 0.00 36.97 3.33
179 181 3.507009 CGACCGTCCCTCGACCTC 61.507 72.222 0.00 0.00 42.86 3.85
182 184 2.124983 CCGTCCCTCGACCTCGTA 60.125 66.667 0.00 0.00 42.86 3.43
196 198 3.928727 CCTCGTAGGTCTGTAACACAA 57.071 47.619 0.00 0.00 0.00 3.33
197 199 4.451629 CCTCGTAGGTCTGTAACACAAT 57.548 45.455 0.00 0.00 0.00 2.71
198 200 4.421948 CCTCGTAGGTCTGTAACACAATC 58.578 47.826 0.00 0.00 0.00 2.67
199 201 4.421948 CTCGTAGGTCTGTAACACAATCC 58.578 47.826 0.00 0.00 0.00 3.01
200 202 3.827876 TCGTAGGTCTGTAACACAATCCA 59.172 43.478 0.00 0.00 0.00 3.41
201 203 4.464951 TCGTAGGTCTGTAACACAATCCAT 59.535 41.667 0.00 0.00 0.00 3.41
202 204 4.804139 CGTAGGTCTGTAACACAATCCATC 59.196 45.833 0.00 0.00 0.00 3.51
203 205 5.394224 CGTAGGTCTGTAACACAATCCATCT 60.394 44.000 0.00 0.00 0.00 2.90
204 206 5.091261 AGGTCTGTAACACAATCCATCTC 57.909 43.478 0.00 0.00 0.00 2.75
205 207 4.532126 AGGTCTGTAACACAATCCATCTCA 59.468 41.667 0.00 0.00 0.00 3.27
206 208 5.013079 AGGTCTGTAACACAATCCATCTCAA 59.987 40.000 0.00 0.00 0.00 3.02
207 209 5.352569 GGTCTGTAACACAATCCATCTCAAG 59.647 44.000 0.00 0.00 0.00 3.02
208 210 4.937620 TCTGTAACACAATCCATCTCAAGC 59.062 41.667 0.00 0.00 0.00 4.01
209 211 4.910195 TGTAACACAATCCATCTCAAGCT 58.090 39.130 0.00 0.00 0.00 3.74
210 212 6.048732 TGTAACACAATCCATCTCAAGCTA 57.951 37.500 0.00 0.00 0.00 3.32
211 213 6.108687 TGTAACACAATCCATCTCAAGCTAG 58.891 40.000 0.00 0.00 0.00 3.42
212 214 5.426689 AACACAATCCATCTCAAGCTAGA 57.573 39.130 0.00 0.00 0.00 2.43
213 215 4.764172 ACACAATCCATCTCAAGCTAGAC 58.236 43.478 0.00 0.00 0.00 2.59
214 216 4.469227 ACACAATCCATCTCAAGCTAGACT 59.531 41.667 0.00 0.00 0.00 3.24
215 217 4.809958 CACAATCCATCTCAAGCTAGACTG 59.190 45.833 0.00 0.00 0.00 3.51
216 218 4.469227 ACAATCCATCTCAAGCTAGACTGT 59.531 41.667 0.00 0.00 0.00 3.55
217 219 4.669206 ATCCATCTCAAGCTAGACTGTG 57.331 45.455 0.00 0.00 0.00 3.66
218 220 3.435275 TCCATCTCAAGCTAGACTGTGT 58.565 45.455 0.00 0.00 0.00 3.72
219 221 3.834813 TCCATCTCAAGCTAGACTGTGTT 59.165 43.478 0.00 0.00 0.00 3.32
220 222 3.931468 CCATCTCAAGCTAGACTGTGTTG 59.069 47.826 0.00 0.00 0.00 3.33
221 223 3.032017 TCTCAAGCTAGACTGTGTTGC 57.968 47.619 3.31 3.31 0.00 4.17
273 307 0.250124 TGGTAGGAGGTTGTTGCACG 60.250 55.000 0.00 0.00 0.00 5.34
277 311 4.683334 GAGGTTGTTGCACGGCGC 62.683 66.667 6.90 0.00 42.89 6.53
305 352 2.504244 GCTGTTCGGACGGTCGAG 60.504 66.667 4.19 0.00 40.42 4.04
320 367 2.034221 GAGGCACACCCAGTTCCC 59.966 66.667 0.00 0.00 33.55 3.97
337 385 2.623535 TCCCCATGTTTATTCGTCACG 58.376 47.619 0.00 0.00 0.00 4.35
340 388 3.181514 CCCCATGTTTATTCGTCACGTTC 60.182 47.826 0.00 0.00 0.00 3.95
352 400 4.163552 TCGTCACGTTCATGCTTTAGTAG 58.836 43.478 0.00 0.00 0.00 2.57
353 401 3.918591 CGTCACGTTCATGCTTTAGTAGT 59.081 43.478 0.00 0.00 0.00 2.73
355 403 5.570206 CGTCACGTTCATGCTTTAGTAGTAA 59.430 40.000 0.00 0.00 0.00 2.24
358 406 9.079833 GTCACGTTCATGCTTTAGTAGTAATAA 57.920 33.333 0.00 0.00 0.00 1.40
360 408 8.865978 CACGTTCATGCTTTAGTAGTAATAACA 58.134 33.333 0.00 0.00 0.00 2.41
361 409 8.866956 ACGTTCATGCTTTAGTAGTAATAACAC 58.133 33.333 0.00 0.00 0.00 3.32
362 410 8.048436 CGTTCATGCTTTAGTAGTAATAACACG 58.952 37.037 0.00 0.00 0.00 4.49
363 411 7.459394 TCATGCTTTAGTAGTAATAACACGC 57.541 36.000 0.00 0.00 0.00 5.34
364 412 6.477688 TCATGCTTTAGTAGTAATAACACGCC 59.522 38.462 0.00 0.00 0.00 5.68
400 1442 2.159653 CCGAAGAGCAAGACAAATTCCG 60.160 50.000 0.00 0.00 0.00 4.30
474 1516 0.456482 CTGAGAGCAGCGTCTCACAG 60.456 60.000 16.29 16.30 46.52 3.66
487 1529 0.034059 CTCACAGACCATATCGCCCC 59.966 60.000 0.00 0.00 0.00 5.80
538 1582 5.797051 AGCACAAATATCACAAGCCAAATT 58.203 33.333 0.00 0.00 0.00 1.82
560 1612 2.689813 CCCCACCATTTCCTCCCC 59.310 66.667 0.00 0.00 0.00 4.81
596 1662 2.987547 CACCAGCCAACTGCCCAG 60.988 66.667 0.00 0.00 43.02 4.45
598 1664 4.980702 CCAGCCAACTGCCCAGCA 62.981 66.667 0.00 0.00 43.02 4.41
638 1704 1.654023 GCCCCACAAGCATCCGTTAC 61.654 60.000 0.00 0.00 0.00 2.50
647 1713 1.084289 GCATCCGTTACCCACTGAAC 58.916 55.000 0.00 0.00 0.00 3.18
675 1741 2.528127 ACACACCATCCGGTCCCA 60.528 61.111 0.00 0.00 44.71 4.37
783 1852 3.537874 CGGCTTCCTCCTACCCCG 61.538 72.222 0.00 0.00 0.00 5.73
790 1859 0.396695 TCCTCCTACCCCGATGACAC 60.397 60.000 0.00 0.00 0.00 3.67
801 1870 2.669569 ATGACACTGTGGGCGCAC 60.670 61.111 25.75 25.75 0.00 5.34
807 1876 4.969196 CTGTGGGCGCACGACACT 62.969 66.667 26.42 0.00 33.97 3.55
819 1888 4.065281 GACACTCCCGGACCCACG 62.065 72.222 0.73 0.00 0.00 4.94
892 1961 0.757188 CTGCGGAGTCTCCCCAGTAT 60.757 60.000 21.20 0.00 37.60 2.12
895 1964 1.202545 GCGGAGTCTCCCCAGTATTTC 60.203 57.143 13.54 0.00 31.13 2.17
920 1989 0.108019 GGCCTCGGGGGTATAAAGTG 59.892 60.000 1.90 0.00 37.43 3.16
1386 2455 2.184830 GCCCGCCGAGGTAATTTCC 61.185 63.158 0.00 0.00 38.74 3.13
1395 2464 0.323087 AGGTAATTTCCACCACCGGC 60.323 55.000 0.00 0.00 38.62 6.13
1417 2486 3.047796 GCTATTTGATTGGCGATTGCTG 58.952 45.455 4.59 0.00 42.25 4.41
1522 2591 1.806542 GATGTGTCAAGGCGTGATTGT 59.193 47.619 6.37 0.00 38.90 2.71
1593 2662 3.489416 GGGGATATTTTTCGATTTTGCGC 59.511 43.478 0.00 0.00 0.00 6.09
1655 2724 6.251255 AGGAATAACGGAGTAGTAGTCTCT 57.749 41.667 4.99 0.00 45.00 3.10
1748 2836 6.887368 TCACTACTTGTTCATTTGTGATTCG 58.113 36.000 0.00 0.00 0.00 3.34
1759 2847 4.695217 TTTGTGATTCGCCCTAATTGAC 57.305 40.909 0.00 0.00 0.00 3.18
1763 2851 1.604278 GATTCGCCCTAATTGACCTGC 59.396 52.381 0.00 0.00 0.00 4.85
1822 2911 9.667107 CACTTCTATCTCCATTTGGTTAACTTA 57.333 33.333 5.42 0.00 36.34 2.24
1862 2951 4.846779 AGTGTTGTTGTTTTGTGTCACT 57.153 36.364 4.27 0.00 0.00 3.41
1864 2953 3.121113 GTGTTGTTGTTTTGTGTCACTGC 59.879 43.478 4.27 0.00 0.00 4.40
1880 2969 3.890756 TCACTGCACATTTGATTTGAGGT 59.109 39.130 0.00 0.00 0.00 3.85
1953 3056 6.809630 AAATGAGGAAACTAGAGTTGCTTC 57.190 37.500 5.72 5.72 44.43 3.86
1958 3061 5.088026 AGGAAACTAGAGTTGCTTCCTAGT 58.912 41.667 10.97 0.00 39.63 2.57
1966 3069 0.605319 TTGCTTCCTAGTTGGTGCGG 60.605 55.000 6.80 0.00 38.47 5.69
1968 3071 0.741221 GCTTCCTAGTTGGTGCGGAG 60.741 60.000 0.00 0.00 37.07 4.63
1971 3074 0.541063 TCCTAGTTGGTGCGGAGACA 60.541 55.000 0.00 0.00 37.07 3.41
2042 3145 3.382546 GGTCTTGTTCATTGATCATGGGG 59.617 47.826 0.00 0.00 33.07 4.96
2060 3163 2.689983 GGGGGCTTGATGAACTACAATG 59.310 50.000 0.00 0.00 0.00 2.82
2081 3184 4.768583 TGATGATGCTATGTAACTGTGCA 58.231 39.130 0.00 0.00 38.05 4.57
2146 3249 0.535102 AGGTTTTCCAGACAGCGTGG 60.535 55.000 0.00 0.00 43.73 4.94
2261 3366 6.959639 TCTTGTTTAATCCTGCTTTTGACT 57.040 33.333 0.00 0.00 0.00 3.41
2384 3489 5.992217 GGCTATTAACTGGATACTCAAGGTG 59.008 44.000 0.00 0.00 37.61 4.00
2418 3541 5.404466 CCAATCATTGGTGTGGTTGTTAT 57.596 39.130 8.44 0.00 45.93 1.89
2816 3939 5.799827 TTACTTGCAAAAGGGCTTACAAT 57.200 34.783 0.00 0.00 34.04 2.71
2817 3940 4.687901 ACTTGCAAAAGGGCTTACAATT 57.312 36.364 0.00 0.00 34.04 2.32
2818 3941 5.034852 ACTTGCAAAAGGGCTTACAATTT 57.965 34.783 0.00 0.00 34.04 1.82
2819 3942 5.436175 ACTTGCAAAAGGGCTTACAATTTT 58.564 33.333 0.00 0.00 34.04 1.82
3013 4139 7.652524 TTTATTGTGGGCTTCTGCATTATTA 57.347 32.000 0.00 0.00 41.91 0.98
3368 4494 3.402628 AAGACTGGTACGTGAGCATTT 57.597 42.857 0.00 0.00 34.32 2.32
3397 4523 2.989571 AGAAACCTTTCCTCCTGGTCAT 59.010 45.455 0.00 0.00 37.92 3.06
3480 4609 5.567154 CGCATCACGTAAAATCATTGTTTCA 59.433 36.000 0.00 0.00 36.87 2.69
3958 5108 4.398358 TGAGGTACTATCTTGTTCACTCCG 59.602 45.833 0.00 0.00 41.55 4.63
3982 5132 3.706594 TGAGTCTTGTCCTCCATGGTATC 59.293 47.826 12.58 2.05 37.07 2.24
3996 5148 4.445735 CCATGGTATCACCGTCCCTTATTT 60.446 45.833 2.57 0.00 42.58 1.40
4001 5153 5.987953 GGTATCACCGTCCCTTATTTTAGTC 59.012 44.000 0.00 0.00 0.00 2.59
4062 5214 7.623999 ATGATTACAGGATGAGAGGTACATT 57.376 36.000 0.00 0.00 39.69 2.71
4068 5220 5.043903 CAGGATGAGAGGTACATTGTTACG 58.956 45.833 0.00 0.00 39.69 3.18
4156 5308 0.745845 AGCTGCCTTCCATGTAAGCG 60.746 55.000 0.00 0.00 35.82 4.68
4163 5315 3.731867 GCCTTCCATGTAAGCGTTGATTG 60.732 47.826 0.00 0.00 0.00 2.67
4168 5320 6.751514 TCCATGTAAGCGTTGATTGTTAAT 57.248 33.333 0.00 0.00 0.00 1.40
4215 5367 5.453480 GGTTTGGGTTGGTTGCAACTATTTA 60.453 40.000 27.64 5.61 35.54 1.40
4216 5368 5.461032 TTGGGTTGGTTGCAACTATTTAG 57.539 39.130 27.64 0.00 35.54 1.85
4217 5369 4.475345 TGGGTTGGTTGCAACTATTTAGT 58.525 39.130 27.64 0.00 38.39 2.24
4218 5370 5.632118 TGGGTTGGTTGCAACTATTTAGTA 58.368 37.500 27.64 4.06 34.99 1.82
4219 5371 6.249951 TGGGTTGGTTGCAACTATTTAGTAT 58.750 36.000 27.64 0.00 34.99 2.12
4220 5372 6.722129 TGGGTTGGTTGCAACTATTTAGTATT 59.278 34.615 27.64 0.00 34.99 1.89
4221 5373 7.233757 TGGGTTGGTTGCAACTATTTAGTATTT 59.766 33.333 27.64 0.00 34.99 1.40
4231 5383 9.404848 GCAACTATTTAGTATTTACCCTCCTTT 57.595 33.333 0.00 0.00 34.99 3.11
4464 5616 2.438021 ACAGGTGACTTAACTGCCTTGA 59.562 45.455 0.00 0.00 40.21 3.02
4476 5628 7.611467 ACTTAACTGCCTTGAATCATCAACATA 59.389 33.333 0.00 0.00 40.59 2.29
4479 5631 7.414222 ACTGCCTTGAATCATCAACATAATT 57.586 32.000 0.00 0.00 40.59 1.40
4521 5673 2.493278 ACTAATGTGCAAATGGCCTGAC 59.507 45.455 3.32 0.00 43.89 3.51
4537 5689 2.231964 CCTGACCAAATCCACCACATTG 59.768 50.000 0.00 0.00 0.00 2.82
4543 5695 0.604578 AATCCACCACATTGCTGCAC 59.395 50.000 0.00 0.00 0.00 4.57
4571 5723 7.141363 ACATGCAAACTAACAACTCTCATTTC 58.859 34.615 0.00 0.00 0.00 2.17
4613 5766 1.178276 CTGACTCGCTACTGAACCCT 58.822 55.000 0.00 0.00 0.00 4.34
4884 6040 3.253432 GGGTCCTGCAACTAACTGAAAAG 59.747 47.826 0.00 0.00 0.00 2.27
4896 6052 8.879759 CAACTAACTGAAAAGAACTGACTAACA 58.120 33.333 0.00 0.00 0.00 2.41
4932 6088 5.919755 TGCGTCTGGTAATGTATAATGGAA 58.080 37.500 0.00 0.00 0.00 3.53
4935 6091 6.482308 GCGTCTGGTAATGTATAATGGAAACT 59.518 38.462 0.00 0.00 0.00 2.66
5145 6304 6.544928 TGTGCTTGGATCTTGAGTCTTATA 57.455 37.500 0.00 0.00 0.00 0.98
5244 6406 7.830739 ACAGAATCTAAAATTTGCTAACCTGG 58.169 34.615 0.00 0.00 0.00 4.45
5248 6410 6.817765 TCTAAAATTTGCTAACCTGGTCTG 57.182 37.500 0.00 0.00 0.00 3.51
5249 6411 6.303839 TCTAAAATTTGCTAACCTGGTCTGT 58.696 36.000 0.00 0.00 0.00 3.41
5268 6430 6.592607 GGTCTGTAGAAATTATGTGTCCGAAA 59.407 38.462 0.00 0.00 0.00 3.46
5294 6456 9.401873 AGACTAATTTTAAACCATTTTACGTGC 57.598 29.630 0.00 0.00 0.00 5.34
5295 6457 8.218256 ACTAATTTTAAACCATTTTACGTGCG 57.782 30.769 0.00 0.00 0.00 5.34
5296 6458 4.950654 TTTTAAACCATTTTACGTGCGC 57.049 36.364 0.00 0.00 0.00 6.09
5297 6459 3.620929 TTAAACCATTTTACGTGCGCA 57.379 38.095 5.66 5.66 0.00 6.09
5298 6460 1.761206 AAACCATTTTACGTGCGCAC 58.239 45.000 30.42 30.42 0.00 5.34
5299 6461 0.663688 AACCATTTTACGTGCGCACA 59.336 45.000 37.03 20.07 0.00 4.57
5300 6462 0.040781 ACCATTTTACGTGCGCACAC 60.041 50.000 37.03 14.74 43.76 3.82
5301 6463 0.237235 CCATTTTACGTGCGCACACT 59.763 50.000 37.03 24.39 45.10 3.55
5302 6464 1.461512 CCATTTTACGTGCGCACACTA 59.538 47.619 37.03 23.36 45.10 2.74
5303 6465 2.492001 CATTTTACGTGCGCACACTAC 58.508 47.619 37.03 13.16 45.10 2.73
5304 6466 1.855513 TTTTACGTGCGCACACTACT 58.144 45.000 37.03 17.18 45.10 2.57
5305 6467 1.133407 TTTACGTGCGCACACTACTG 58.867 50.000 37.03 22.96 45.10 2.74
5306 6468 0.311477 TTACGTGCGCACACTACTGA 59.689 50.000 37.03 14.37 45.10 3.41
5307 6469 0.386352 TACGTGCGCACACTACTGAC 60.386 55.000 37.03 10.05 45.10 3.51
5308 6470 1.371758 CGTGCGCACACTACTGACT 60.372 57.895 37.03 0.00 45.10 3.41
5309 6471 1.608966 CGTGCGCACACTACTGACTG 61.609 60.000 37.03 15.14 45.10 3.51
5310 6472 1.664649 TGCGCACACTACTGACTGC 60.665 57.895 5.66 0.00 0.00 4.40
5311 6473 1.664649 GCGCACACTACTGACTGCA 60.665 57.895 0.30 0.00 0.00 4.41
5312 6474 1.891060 GCGCACACTACTGACTGCAC 61.891 60.000 0.30 0.00 0.00 4.57
5313 6475 1.608966 CGCACACTACTGACTGCACG 61.609 60.000 0.00 0.00 0.00 5.34
5314 6476 1.891060 GCACACTACTGACTGCACGC 61.891 60.000 0.00 0.00 0.00 5.34
5315 6477 0.597377 CACACTACTGACTGCACGCA 60.597 55.000 0.00 0.00 0.00 5.24
5321 6483 1.154205 ACTGACTGCACGCAGAACAC 61.154 55.000 25.09 12.91 46.30 3.32
5332 6494 1.016627 GCAGAACACAACAGAGCACA 58.983 50.000 0.00 0.00 0.00 4.57
5344 6506 3.110705 ACAGAGCACACCCTCTAATCAT 58.889 45.455 0.00 0.00 40.11 2.45
5345 6507 3.118482 ACAGAGCACACCCTCTAATCATG 60.118 47.826 0.00 0.00 40.11 3.07
5346 6508 2.158842 AGAGCACACCCTCTAATCATGC 60.159 50.000 0.00 0.00 40.30 4.06
5349 6511 2.681976 GCACACCCTCTAATCATGCACT 60.682 50.000 0.00 0.00 0.00 4.40
5350 6512 3.432186 GCACACCCTCTAATCATGCACTA 60.432 47.826 0.00 0.00 0.00 2.74
5351 6513 4.375272 CACACCCTCTAATCATGCACTAG 58.625 47.826 0.00 0.00 0.00 2.57
5354 6516 5.053145 CACCCTCTAATCATGCACTAGAAC 58.947 45.833 0.00 0.00 0.00 3.01
5357 6519 6.784969 ACCCTCTAATCATGCACTAGAACTAT 59.215 38.462 0.00 0.00 0.00 2.12
5358 6520 7.039363 ACCCTCTAATCATGCACTAGAACTATC 60.039 40.741 0.00 0.00 0.00 2.08
5359 6521 7.039434 CCCTCTAATCATGCACTAGAACTATCA 60.039 40.741 0.00 0.00 0.00 2.15
5360 6522 8.363390 CCTCTAATCATGCACTAGAACTATCAA 58.637 37.037 0.00 0.00 0.00 2.57
5361 6523 9.755804 CTCTAATCATGCACTAGAACTATCAAA 57.244 33.333 0.00 0.00 0.00 2.69
5362 6524 9.755804 TCTAATCATGCACTAGAACTATCAAAG 57.244 33.333 0.00 0.00 0.00 2.77
5363 6525 9.755804 CTAATCATGCACTAGAACTATCAAAGA 57.244 33.333 0.00 0.00 0.00 2.52
5364 6526 8.430801 AATCATGCACTAGAACTATCAAAGAC 57.569 34.615 0.00 0.00 0.00 3.01
5365 6527 6.341316 TCATGCACTAGAACTATCAAAGACC 58.659 40.000 0.00 0.00 0.00 3.85
5366 6528 4.744570 TGCACTAGAACTATCAAAGACCG 58.255 43.478 0.00 0.00 0.00 4.79
5367 6529 4.461431 TGCACTAGAACTATCAAAGACCGA 59.539 41.667 0.00 0.00 0.00 4.69
5368 6530 5.047590 TGCACTAGAACTATCAAAGACCGAA 60.048 40.000 0.00 0.00 0.00 4.30
5369 6531 5.867716 GCACTAGAACTATCAAAGACCGAAA 59.132 40.000 0.00 0.00 0.00 3.46
5370 6532 6.367969 GCACTAGAACTATCAAAGACCGAAAA 59.632 38.462 0.00 0.00 0.00 2.29
5371 6533 7.064728 GCACTAGAACTATCAAAGACCGAAAAT 59.935 37.037 0.00 0.00 0.00 1.82
5372 6534 9.582431 CACTAGAACTATCAAAGACCGAAAATA 57.418 33.333 0.00 0.00 0.00 1.40
5373 6535 9.583765 ACTAGAACTATCAAAGACCGAAAATAC 57.416 33.333 0.00 0.00 0.00 1.89
5374 6536 9.804758 CTAGAACTATCAAAGACCGAAAATACT 57.195 33.333 0.00 0.00 0.00 2.12
5375 6537 8.705048 AGAACTATCAAAGACCGAAAATACTC 57.295 34.615 0.00 0.00 0.00 2.59
5376 6538 7.488471 AGAACTATCAAAGACCGAAAATACTCG 59.512 37.037 0.00 0.00 38.58 4.18
5377 6539 6.628185 ACTATCAAAGACCGAAAATACTCGT 58.372 36.000 0.00 0.00 37.11 4.18
5378 6540 6.750963 ACTATCAAAGACCGAAAATACTCGTC 59.249 38.462 0.00 0.00 37.11 4.20
5379 6541 5.130292 TCAAAGACCGAAAATACTCGTCT 57.870 39.130 0.00 0.00 37.11 4.18
5380 6542 5.535333 TCAAAGACCGAAAATACTCGTCTT 58.465 37.500 0.00 0.00 39.06 3.01
5381 6543 5.632347 TCAAAGACCGAAAATACTCGTCTTC 59.368 40.000 0.00 0.00 37.78 2.87
5382 6544 5.388408 AAGACCGAAAATACTCGTCTTCT 57.612 39.130 0.00 0.00 35.89 2.85
5383 6545 5.388408 AGACCGAAAATACTCGTCTTCTT 57.612 39.130 0.00 0.00 37.11 2.52
5384 6546 5.780984 AGACCGAAAATACTCGTCTTCTTT 58.219 37.500 0.00 0.00 37.11 2.52
5385 6547 6.917533 AGACCGAAAATACTCGTCTTCTTTA 58.082 36.000 0.00 0.00 37.11 1.85
5386 6548 7.545489 AGACCGAAAATACTCGTCTTCTTTAT 58.455 34.615 0.00 0.00 37.11 1.40
5387 6549 8.033626 AGACCGAAAATACTCGTCTTCTTTATT 58.966 33.333 0.00 0.00 37.11 1.40
5388 6550 8.182658 ACCGAAAATACTCGTCTTCTTTATTC 57.817 34.615 0.00 0.00 37.11 1.75
5389 6551 7.816031 ACCGAAAATACTCGTCTTCTTTATTCA 59.184 33.333 0.00 0.00 37.11 2.57
5390 6552 8.653338 CCGAAAATACTCGTCTTCTTTATTCAA 58.347 33.333 0.00 0.00 37.11 2.69
5405 6567 7.370383 TCTTTATTCAATTGACAAGCACCTTC 58.630 34.615 7.89 0.00 0.00 3.46
5409 6571 1.244019 ATTGACAAGCACCTTCGGCC 61.244 55.000 0.00 0.00 0.00 6.13
5414 6576 1.488812 ACAAGCACCTTCGGCCATATA 59.511 47.619 2.24 0.00 0.00 0.86
5418 6580 1.878953 CACCTTCGGCCATATACACC 58.121 55.000 2.24 0.00 0.00 4.16
5421 6583 2.158813 ACCTTCGGCCATATACACCTTG 60.159 50.000 2.24 0.00 0.00 3.61
5422 6584 2.158813 CCTTCGGCCATATACACCTTGT 60.159 50.000 2.24 0.00 0.00 3.16
5423 6585 3.541632 CTTCGGCCATATACACCTTGTT 58.458 45.455 2.24 0.00 0.00 2.83
5439 6601 7.330262 ACACCTTGTTTTTGACAAATCATCTT 58.670 30.769 0.50 0.00 46.99 2.40
5478 6643 7.933033 ACAATTGCATCATTTACAAGAAAAGGT 59.067 29.630 5.05 0.00 0.00 3.50
5491 6656 9.542462 TTACAAGAAAAGGTATTATCTCATCCG 57.458 33.333 0.00 0.00 0.00 4.18
5506 6671 3.142393 CCGGAGGCGAATCCATCT 58.858 61.111 0.00 0.00 46.14 2.90
5510 6675 1.821753 CGGAGGCGAATCCATCTAGAT 59.178 52.381 0.00 0.00 39.53 1.98
5511 6676 3.017442 CGGAGGCGAATCCATCTAGATA 58.983 50.000 4.54 0.00 39.53 1.98
5512 6677 3.181495 CGGAGGCGAATCCATCTAGATAC 60.181 52.174 4.54 0.00 39.53 2.24
5513 6678 4.020543 GGAGGCGAATCCATCTAGATACT 58.979 47.826 4.54 0.00 39.34 2.12
5514 6679 5.194432 GGAGGCGAATCCATCTAGATACTA 58.806 45.833 4.54 0.00 39.34 1.82
5515 6680 5.298276 GGAGGCGAATCCATCTAGATACTAG 59.702 48.000 4.54 0.00 39.34 2.57
5516 6681 5.197451 AGGCGAATCCATCTAGATACTAGG 58.803 45.833 4.54 2.59 37.29 3.02
5517 6682 5.044772 AGGCGAATCCATCTAGATACTAGGA 60.045 44.000 4.54 8.40 37.29 2.94
5518 6683 5.298276 GGCGAATCCATCTAGATACTAGGAG 59.702 48.000 4.54 0.00 34.01 3.69
5519 6684 6.116806 GCGAATCCATCTAGATACTAGGAGA 58.883 44.000 4.54 0.00 0.00 3.71
5520 6685 6.260050 GCGAATCCATCTAGATACTAGGAGAG 59.740 46.154 4.54 5.11 0.00 3.20
5522 6687 8.044309 CGAATCCATCTAGATACTAGGAGAGAA 58.956 40.741 4.54 0.00 0.00 2.87
5523 6688 9.174166 GAATCCATCTAGATACTAGGAGAGAAC 57.826 40.741 4.54 0.00 0.00 3.01
5525 6690 8.282801 TCCATCTAGATACTAGGAGAGAACTT 57.717 38.462 4.54 0.00 0.00 2.66
5527 6692 7.393234 CCATCTAGATACTAGGAGAGAACTTGG 59.607 44.444 4.54 0.00 0.00 3.61
5528 6693 6.300703 TCTAGATACTAGGAGAGAACTTGGC 58.699 44.000 0.00 0.00 0.00 4.52
5530 6695 2.327325 ACTAGGAGAGAACTTGGCCA 57.673 50.000 0.00 0.00 0.00 5.36
5531 6696 2.621070 ACTAGGAGAGAACTTGGCCAA 58.379 47.619 19.25 19.25 0.00 4.52
5532 6697 3.185455 ACTAGGAGAGAACTTGGCCAAT 58.815 45.455 20.85 4.57 0.00 3.16
5533 6698 3.589288 ACTAGGAGAGAACTTGGCCAATT 59.411 43.478 20.85 11.29 0.00 2.32
5537 6702 3.129988 GGAGAGAACTTGGCCAATTCATG 59.870 47.826 27.65 17.51 0.00 3.07
5538 6703 4.012374 GAGAGAACTTGGCCAATTCATGA 58.988 43.478 27.65 7.04 0.00 3.07
5540 6705 5.021458 AGAGAACTTGGCCAATTCATGAAT 58.979 37.500 27.65 15.36 0.00 2.57
5542 6707 4.773674 AGAACTTGGCCAATTCATGAATCA 59.226 37.500 27.65 11.81 0.00 2.57
5543 6708 5.246656 AGAACTTGGCCAATTCATGAATCAA 59.753 36.000 27.65 17.75 0.00 2.57
5544 6709 5.486735 ACTTGGCCAATTCATGAATCAAA 57.513 34.783 20.85 8.10 0.00 2.69
5545 6710 5.240121 ACTTGGCCAATTCATGAATCAAAC 58.760 37.500 20.85 12.43 0.00 2.93
5546 6711 4.886496 TGGCCAATTCATGAATCAAACA 57.114 36.364 20.95 14.60 0.00 2.83
5547 6712 5.224821 TGGCCAATTCATGAATCAAACAA 57.775 34.783 20.95 2.95 0.00 2.83
5548 6713 5.618236 TGGCCAATTCATGAATCAAACAAA 58.382 33.333 20.95 2.34 0.00 2.83
5549 6714 6.060136 TGGCCAATTCATGAATCAAACAAAA 58.940 32.000 20.95 0.95 0.00 2.44
5550 6715 6.017275 TGGCCAATTCATGAATCAAACAAAAC 60.017 34.615 20.95 6.19 0.00 2.43
5551 6716 6.072733 GCCAATTCATGAATCAAACAAAACG 58.927 36.000 20.95 1.78 0.00 3.60
5552 6717 6.292811 GCCAATTCATGAATCAAACAAAACGT 60.293 34.615 20.95 0.00 0.00 3.99
5553 6718 7.064674 CCAATTCATGAATCAAACAAAACGTG 58.935 34.615 20.95 10.62 0.00 4.49
5554 6719 7.042858 CCAATTCATGAATCAAACAAAACGTGA 60.043 33.333 20.95 0.00 0.00 4.35
5555 6720 8.489559 CAATTCATGAATCAAACAAAACGTGAT 58.510 29.630 20.95 0.00 33.41 3.06
5556 6721 8.592105 ATTCATGAATCAAACAAAACGTGATT 57.408 26.923 15.36 0.00 43.06 2.57
5557 6722 7.392234 TCATGAATCAAACAAAACGTGATTG 57.608 32.000 11.58 11.58 41.03 2.67
5558 6723 6.977502 TCATGAATCAAACAAAACGTGATTGT 59.022 30.769 12.72 12.72 41.03 2.71
5559 6724 6.804534 TGAATCAAACAAAACGTGATTGTC 57.195 33.333 17.29 7.29 41.03 3.18
5595 6764 7.394016 TCCTTCAGAGCATTAACAACTCATTA 58.606 34.615 4.57 0.00 32.71 1.90
5597 6766 8.341173 CCTTCAGAGCATTAACAACTCATTATC 58.659 37.037 4.57 0.00 32.71 1.75
5600 6769 6.479990 CAGAGCATTAACAACTCATTATCGGA 59.520 38.462 4.57 0.00 32.71 4.55
5613 6782 5.989477 TCATTATCGGAGACAACCTCAATT 58.011 37.500 0.00 0.00 42.51 2.32
5623 6792 6.259550 AGACAACCTCAATTTTGCTACATC 57.740 37.500 0.00 0.00 0.00 3.06
5636 6805 1.200020 GCTACATCCCACTGTTTGTGC 59.800 52.381 0.00 0.00 44.92 4.57
5653 6822 6.758886 TGTTTGTGCTAAGTTTAACCCAAATG 59.241 34.615 0.00 0.00 0.00 2.32
5655 6824 6.472686 TGTGCTAAGTTTAACCCAAATGTT 57.527 33.333 0.00 0.00 0.00 2.71
5656 6825 7.584122 TGTGCTAAGTTTAACCCAAATGTTA 57.416 32.000 0.00 0.00 0.00 2.41
5662 6831 6.664428 AGTTTAACCCAAATGTTACAGCAT 57.336 33.333 0.00 0.00 30.73 3.79
5697 6866 7.061557 GCAGAAAATGAGTCATAGCAAAAGTTC 59.938 37.037 5.94 1.41 0.00 3.01
5698 6867 8.077991 CAGAAAATGAGTCATAGCAAAAGTTCA 58.922 33.333 5.94 0.00 0.00 3.18
5700 6869 7.516198 AAATGAGTCATAGCAAAAGTTCAGT 57.484 32.000 5.94 0.00 0.00 3.41
5716 6885 4.098349 AGTTCAGTCTTTCATTTGCTGCAA 59.902 37.500 11.69 11.69 0.00 4.08
5723 6892 6.152323 AGTCTTTCATTTGCTGCAACTATGAT 59.848 34.615 23.11 9.86 0.00 2.45
5729 6898 3.235157 TGCTGCAACTATGATTTTGCC 57.765 42.857 0.00 0.00 46.28 4.52
5742 6911 8.582437 ACTATGATTTTGCCATTATCATCTTGG 58.418 33.333 5.59 0.00 39.19 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.440569 GCGCAGACAACTCTCTCGC 61.441 63.158 0.30 0.00 37.96 5.03
41 42 2.726821 CTGCAAATGGTGGGTCATAGT 58.273 47.619 0.00 0.00 0.00 2.12
44 45 0.542467 TGCTGCAAATGGTGGGTCAT 60.542 50.000 0.00 0.00 0.00 3.06
105 107 3.349006 CTGCAAACGCCGAGTGCT 61.349 61.111 15.43 0.00 39.09 4.40
108 110 3.349006 CAGCTGCAAACGCCGAGT 61.349 61.111 0.00 0.00 0.00 4.18
111 113 4.389576 GGTCAGCTGCAAACGCCG 62.390 66.667 9.47 0.00 0.00 6.46
114 116 0.248458 AAAACGGTCAGCTGCAAACG 60.248 50.000 9.47 10.36 0.00 3.60
123 125 2.494550 CGCAAGCAAAAACGGTCAG 58.505 52.632 0.00 0.00 0.00 3.51
136 138 1.226916 TTTGCAACACCAGCGCAAG 60.227 52.632 11.47 1.76 45.58 4.01
150 152 0.507358 GACGGTCGAGAAGTGTTTGC 59.493 55.000 0.00 0.00 0.00 3.68
159 161 2.435586 GTCGAGGGACGGTCGAGA 60.436 66.667 1.43 0.00 46.62 4.04
179 181 4.182693 TGGATTGTGTTACAGACCTACG 57.817 45.455 0.00 0.00 0.00 3.51
182 184 4.532126 TGAGATGGATTGTGTTACAGACCT 59.468 41.667 0.00 0.00 0.00 3.85
186 188 4.940046 AGCTTGAGATGGATTGTGTTACAG 59.060 41.667 0.00 0.00 0.00 2.74
187 189 4.910195 AGCTTGAGATGGATTGTGTTACA 58.090 39.130 0.00 0.00 0.00 2.41
190 192 5.046014 AGTCTAGCTTGAGATGGATTGTGTT 60.046 40.000 0.00 0.00 0.00 3.32
191 193 4.469227 AGTCTAGCTTGAGATGGATTGTGT 59.531 41.667 0.00 0.00 0.00 3.72
192 194 4.809958 CAGTCTAGCTTGAGATGGATTGTG 59.190 45.833 0.00 0.00 0.00 3.33
193 195 4.469227 ACAGTCTAGCTTGAGATGGATTGT 59.531 41.667 12.70 5.24 37.14 2.71
194 196 4.809958 CACAGTCTAGCTTGAGATGGATTG 59.190 45.833 12.70 4.13 35.45 2.67
195 197 4.469227 ACACAGTCTAGCTTGAGATGGATT 59.531 41.667 12.70 0.00 0.00 3.01
196 198 4.029520 ACACAGTCTAGCTTGAGATGGAT 58.970 43.478 12.70 1.13 0.00 3.41
197 199 3.435275 ACACAGTCTAGCTTGAGATGGA 58.565 45.455 12.70 0.00 0.00 3.41
198 200 3.883830 ACACAGTCTAGCTTGAGATGG 57.116 47.619 12.70 6.37 0.00 3.51
199 201 3.370366 GCAACACAGTCTAGCTTGAGATG 59.630 47.826 0.00 3.58 0.00 2.90
200 202 3.007290 TGCAACACAGTCTAGCTTGAGAT 59.993 43.478 0.00 0.00 0.00 2.75
201 203 2.365293 TGCAACACAGTCTAGCTTGAGA 59.635 45.455 0.00 0.00 0.00 3.27
202 204 2.759191 TGCAACACAGTCTAGCTTGAG 58.241 47.619 0.00 0.00 0.00 3.02
203 205 2.872245 GTTGCAACACAGTCTAGCTTGA 59.128 45.455 24.52 0.00 0.00 3.02
204 206 2.613595 TGTTGCAACACAGTCTAGCTTG 59.386 45.455 27.96 0.00 33.17 4.01
205 207 2.917933 TGTTGCAACACAGTCTAGCTT 58.082 42.857 27.96 0.00 33.17 3.74
206 208 2.620251 TGTTGCAACACAGTCTAGCT 57.380 45.000 27.96 0.00 33.17 3.32
218 220 1.132643 GTAACGTGGGTTGTGTTGCAA 59.867 47.619 0.00 0.00 36.90 4.08
219 221 0.733729 GTAACGTGGGTTGTGTTGCA 59.266 50.000 0.00 0.00 36.90 4.08
220 222 0.733729 TGTAACGTGGGTTGTGTTGC 59.266 50.000 0.00 0.00 36.90 4.17
221 223 3.489180 TTTGTAACGTGGGTTGTGTTG 57.511 42.857 0.00 0.00 36.90 3.33
277 311 1.057822 CGAACAGCAACTGATCGCG 59.942 57.895 13.11 0.00 46.07 5.87
284 318 1.300697 GACCGTCCGAACAGCAACT 60.301 57.895 0.00 0.00 0.00 3.16
305 352 3.224007 ATGGGGAACTGGGTGTGCC 62.224 63.158 0.00 0.00 44.01 5.01
320 367 4.655440 TGAACGTGACGAATAAACATGG 57.345 40.909 13.70 0.00 0.00 3.66
337 385 7.844653 GCGTGTTATTACTACTAAAGCATGAAC 59.155 37.037 0.00 0.00 0.00 3.18
340 388 6.561533 CGGCGTGTTATTACTACTAAAGCATG 60.562 42.308 0.00 0.00 0.00 4.06
400 1442 0.859232 ACAGAACATGTGCGTCGTTC 59.141 50.000 0.00 0.00 41.91 3.95
443 1485 1.364626 GCTCTCAGCAATGGGACACG 61.365 60.000 0.00 0.00 41.41 4.49
474 1516 2.049433 CGTCGGGGCGATATGGTC 60.049 66.667 0.00 0.00 38.42 4.02
538 1582 1.006639 GGAGGAAATGGTGGGGCTTAA 59.993 52.381 0.00 0.00 0.00 1.85
560 1612 0.463833 GCACCGTTGGAATAGAGGGG 60.464 60.000 0.00 0.00 0.00 4.79
562 1614 1.369625 GTGCACCGTTGGAATAGAGG 58.630 55.000 5.22 0.00 0.00 3.69
616 1682 3.070576 GGATGCTTGTGGGGCCAC 61.071 66.667 4.39 0.00 46.33 5.01
617 1683 4.738998 CGGATGCTTGTGGGGCCA 62.739 66.667 4.39 0.00 0.00 5.36
618 1684 2.830186 TAACGGATGCTTGTGGGGCC 62.830 60.000 0.00 0.00 0.00 5.80
619 1685 1.377987 TAACGGATGCTTGTGGGGC 60.378 57.895 0.00 0.00 0.00 5.80
620 1686 1.029947 GGTAACGGATGCTTGTGGGG 61.030 60.000 0.00 0.00 0.00 4.96
638 1704 2.283173 GGCCCTTGGTTCAGTGGG 60.283 66.667 0.00 0.00 42.41 4.61
647 1713 4.994756 GGTGTGTGGGGCCCTTGG 62.995 72.222 25.93 0.00 0.00 3.61
686 1752 2.475466 GCTGTGATGCCCCGTCATG 61.475 63.158 0.00 0.00 31.77 3.07
687 1753 2.124570 GCTGTGATGCCCCGTCAT 60.125 61.111 0.00 0.00 31.77 3.06
783 1852 2.358615 TGCGCCCACAGTGTCATC 60.359 61.111 4.18 0.00 0.00 2.92
790 1859 4.969196 AGTGTCGTGCGCCCACAG 62.969 66.667 4.18 0.00 42.17 3.66
801 1870 4.065281 GTGGGTCCGGGAGTGTCG 62.065 72.222 0.00 0.00 0.00 4.35
807 1876 4.289101 TGAGACGTGGGTCCGGGA 62.289 66.667 0.00 0.00 44.54 5.14
920 1989 1.388837 GCCGAGGAGAGAGAGGAACC 61.389 65.000 0.00 0.00 0.00 3.62
1132 2201 4.504916 CAGCTCGGCGTCCCTGAG 62.505 72.222 6.85 0.00 35.92 3.35
1386 2455 1.095228 ATCAAATAGCGCCGGTGGTG 61.095 55.000 29.06 12.74 36.10 4.17
1441 2510 4.331168 CGCTAAATTAGGATCTAGGCATGC 59.669 45.833 9.90 9.90 0.00 4.06
1593 2662 1.860950 CTACAATTCTGGATCCGCACG 59.139 52.381 7.39 0.00 0.00 5.34
1822 2911 4.708421 ACACTAGCATTTCCATGAAAGCAT 59.292 37.500 0.00 0.00 34.92 3.79
1862 2951 6.839124 AGATAACCTCAAATCAAATGTGCA 57.161 33.333 0.00 0.00 0.00 4.57
1864 2953 9.388506 AGACTAGATAACCTCAAATCAAATGTG 57.611 33.333 0.00 0.00 0.00 3.21
1880 2969 4.557705 AGCAAAGGCCCTAGACTAGATAA 58.442 43.478 11.27 0.00 42.56 1.75
1932 3021 4.534103 AGGAAGCAACTCTAGTTTCCTCAT 59.466 41.667 8.24 0.00 37.96 2.90
1953 3056 0.389948 GTGTCTCCGCACCAACTAGG 60.390 60.000 0.00 0.00 45.67 3.02
1987 3090 4.220693 TGATGTGCCTAGCAACAGTAAT 57.779 40.909 0.00 0.00 41.47 1.89
2020 3123 3.382546 CCCCATGATCAATGAACAAGACC 59.617 47.826 0.00 0.00 38.72 3.85
2029 3132 2.076207 TCAAGCCCCCATGATCAATG 57.924 50.000 0.00 0.00 35.89 2.82
2042 3145 6.436261 CATCATCATTGTAGTTCATCAAGCC 58.564 40.000 0.00 0.00 0.00 4.35
2060 3163 5.739752 TTGCACAGTTACATAGCATCATC 57.260 39.130 0.00 0.00 34.87 2.92
2081 3184 6.855763 TGAAGGACATAATTTCCTGCAATT 57.144 33.333 3.17 0.00 44.75 2.32
2208 3311 9.605275 TCAAATCTAGTAAATGATGGAACTGAG 57.395 33.333 0.00 0.00 0.00 3.35
2261 3366 2.753296 CCGCCAAAGAAATGCTGAAAA 58.247 42.857 0.00 0.00 0.00 2.29
2403 3508 7.125792 ACCAAATAAATAACAACCACACCAA 57.874 32.000 0.00 0.00 0.00 3.67
2449 3572 4.181578 CACCATCCTGTAGTAACGGAAAG 58.818 47.826 0.00 0.00 33.85 2.62
2817 3940 5.779771 AGCAACATTCTGAATAGGGGAAAAA 59.220 36.000 1.98 0.00 0.00 1.94
2818 3941 5.185635 CAGCAACATTCTGAATAGGGGAAAA 59.814 40.000 1.98 0.00 33.54 2.29
2819 3942 4.706476 CAGCAACATTCTGAATAGGGGAAA 59.294 41.667 1.98 0.00 33.54 3.13
2821 3944 3.889815 CAGCAACATTCTGAATAGGGGA 58.110 45.455 1.98 0.00 33.54 4.81
2822 3945 2.360165 GCAGCAACATTCTGAATAGGGG 59.640 50.000 1.98 0.00 33.54 4.79
2823 3946 3.066342 CAGCAGCAACATTCTGAATAGGG 59.934 47.826 1.98 0.00 33.54 3.53
2824 3947 3.693085 ACAGCAGCAACATTCTGAATAGG 59.307 43.478 1.98 0.00 33.54 2.57
3272 4398 6.586344 CACAACAGATCTCACCTGGTAATAT 58.414 40.000 0.00 0.00 36.03 1.28
3274 4400 4.836825 CACAACAGATCTCACCTGGTAAT 58.163 43.478 0.00 0.00 36.03 1.89
3368 4494 5.592688 CAGGAGGAAAGGTTTCTAACAAACA 59.407 40.000 2.60 0.00 37.35 2.83
3397 4523 6.280855 TCTTCGACAAACCATGAGAAGATA 57.719 37.500 12.96 0.04 43.79 1.98
3654 4804 6.440647 TGGATACTCCCTAACATACATGGATC 59.559 42.308 0.00 0.00 35.03 3.36
3664 4814 9.670442 AAATATAAGACTGGATACTCCCTAACA 57.330 33.333 0.00 0.00 35.03 2.41
3669 4819 7.736893 ACACAAATATAAGACTGGATACTCCC 58.263 38.462 0.00 0.00 35.03 4.30
3958 5108 2.039084 ACCATGGAGGACAAGACTCAAC 59.961 50.000 21.47 0.00 41.22 3.18
3965 5115 2.483714 CGGTGATACCATGGAGGACAAG 60.484 54.545 21.47 6.96 38.47 3.16
3982 5132 4.482952 AGGACTAAAATAAGGGACGGTG 57.517 45.455 0.00 0.00 0.00 4.94
4020 5172 8.615211 TGTAATCATATGCACATCAGAACTTTC 58.385 33.333 0.00 0.00 0.00 2.62
4031 5183 6.423776 TCTCATCCTGTAATCATATGCACA 57.576 37.500 0.00 1.50 0.00 4.57
4032 5184 5.873712 CCTCTCATCCTGTAATCATATGCAC 59.126 44.000 0.00 0.00 0.00 4.57
4062 5214 4.020396 TCCTTTGCAGGGTTATACGTAACA 60.020 41.667 0.00 0.00 41.59 2.41
4068 5220 3.694566 CCTTGTCCTTTGCAGGGTTATAC 59.305 47.826 7.51 0.63 41.25 1.47
4174 5326 7.066142 ACCCAAACCAGTGCAATATATTATGA 58.934 34.615 0.00 0.00 0.00 2.15
4215 5367 3.842436 ACGGACAAAGGAGGGTAAATACT 59.158 43.478 0.00 0.00 0.00 2.12
4216 5368 3.937079 CACGGACAAAGGAGGGTAAATAC 59.063 47.826 0.00 0.00 0.00 1.89
4217 5369 3.583966 ACACGGACAAAGGAGGGTAAATA 59.416 43.478 0.00 0.00 0.00 1.40
4218 5370 2.374170 ACACGGACAAAGGAGGGTAAAT 59.626 45.455 0.00 0.00 0.00 1.40
4219 5371 1.770061 ACACGGACAAAGGAGGGTAAA 59.230 47.619 0.00 0.00 0.00 2.01
4220 5372 1.426751 ACACGGACAAAGGAGGGTAA 58.573 50.000 0.00 0.00 0.00 2.85
4221 5373 1.345415 GAACACGGACAAAGGAGGGTA 59.655 52.381 0.00 0.00 0.00 3.69
4281 5433 4.952262 TGCTTTCAGATTAGCATGTGAC 57.048 40.909 4.09 0.00 42.12 3.67
4464 5616 8.492782 AGAGTGAGAGGAATTATGTTGATGATT 58.507 33.333 0.00 0.00 0.00 2.57
4476 5628 6.882768 AGAATAACCAGAGTGAGAGGAATT 57.117 37.500 0.00 0.00 0.00 2.17
4479 5631 6.080969 AGTAGAATAACCAGAGTGAGAGGA 57.919 41.667 0.00 0.00 0.00 3.71
4521 5673 1.673626 GCAGCAATGTGGTGGATTTGG 60.674 52.381 9.28 0.00 45.26 3.28
4543 5695 5.237127 TGAGAGTTGTTAGTTTGCATGTCAG 59.763 40.000 0.00 0.00 0.00 3.51
4571 5723 5.071519 AGACATTATCCATCCCTGTGAGAAG 59.928 44.000 0.00 0.00 0.00 2.85
4622 5775 2.125512 GCTACTCCACACAGCCGG 60.126 66.667 0.00 0.00 0.00 6.13
4884 6040 3.996480 ACAAGAGCCTGTTAGTCAGTTC 58.004 45.455 0.00 0.00 42.19 3.01
4896 6052 2.036475 CCAGACGCATATACAAGAGCCT 59.964 50.000 0.00 0.00 0.00 4.58
4897 6053 2.224066 ACCAGACGCATATACAAGAGCC 60.224 50.000 0.00 0.00 0.00 4.70
4932 6088 4.553330 ACAAATAGGTCGGATGTCAGTT 57.447 40.909 0.00 0.00 0.00 3.16
4935 6091 3.181469 GGCTACAAATAGGTCGGATGTCA 60.181 47.826 0.00 0.00 0.00 3.58
5126 6282 7.215789 ACAGCATATAAGACTCAAGATCCAAG 58.784 38.462 0.00 0.00 0.00 3.61
5145 6304 2.944129 ACACACACCCTTAAACAGCAT 58.056 42.857 0.00 0.00 0.00 3.79
5244 6406 7.544566 TCTTTCGGACACATAATTTCTACAGAC 59.455 37.037 0.00 0.00 0.00 3.51
5248 6410 7.829378 AGTCTTTCGGACACATAATTTCTAC 57.171 36.000 0.00 0.00 46.72 2.59
5268 6430 9.401873 GCACGTAAAATGGTTTAAAATTAGTCT 57.598 29.630 0.00 0.00 31.02 3.24
5281 6443 0.040781 GTGTGCGCACGTAAAATGGT 60.041 50.000 33.22 0.00 35.75 3.55
5293 6455 1.664649 TGCAGTCAGTAGTGTGCGC 60.665 57.895 0.00 0.00 38.84 6.09
5294 6456 1.608966 CGTGCAGTCAGTAGTGTGCG 61.609 60.000 8.22 0.00 38.84 5.34
5295 6457 1.891060 GCGTGCAGTCAGTAGTGTGC 61.891 60.000 6.27 6.27 36.42 4.57
5296 6458 0.597377 TGCGTGCAGTCAGTAGTGTG 60.597 55.000 0.00 0.00 0.00 3.82
5297 6459 0.319040 CTGCGTGCAGTCAGTAGTGT 60.319 55.000 13.62 0.00 39.10 3.55
5298 6460 0.039165 TCTGCGTGCAGTCAGTAGTG 60.039 55.000 20.33 0.00 43.96 2.74
5299 6461 0.673985 TTCTGCGTGCAGTCAGTAGT 59.326 50.000 20.33 0.00 43.96 2.73
5300 6462 1.063806 GTTCTGCGTGCAGTCAGTAG 58.936 55.000 20.33 3.37 43.96 2.57
5301 6463 0.387565 TGTTCTGCGTGCAGTCAGTA 59.612 50.000 20.33 0.00 43.96 2.74
5302 6464 1.143838 TGTTCTGCGTGCAGTCAGT 59.856 52.632 20.33 0.00 43.96 3.41
5303 6465 1.153597 TGTGTTCTGCGTGCAGTCAG 61.154 55.000 20.33 8.45 43.96 3.51
5304 6466 0.742635 TTGTGTTCTGCGTGCAGTCA 60.743 50.000 20.33 16.95 43.96 3.41
5305 6467 0.316196 GTTGTGTTCTGCGTGCAGTC 60.316 55.000 20.33 14.90 43.96 3.51
5306 6468 1.024046 TGTTGTGTTCTGCGTGCAGT 61.024 50.000 20.33 0.00 43.96 4.40
5307 6469 0.316442 CTGTTGTGTTCTGCGTGCAG 60.316 55.000 15.59 15.59 44.86 4.41
5308 6470 0.742635 TCTGTTGTGTTCTGCGTGCA 60.743 50.000 0.00 0.00 0.00 4.57
5309 6471 0.041839 CTCTGTTGTGTTCTGCGTGC 60.042 55.000 0.00 0.00 0.00 5.34
5310 6472 0.041839 GCTCTGTTGTGTTCTGCGTG 60.042 55.000 0.00 0.00 0.00 5.34
5311 6473 0.461870 TGCTCTGTTGTGTTCTGCGT 60.462 50.000 0.00 0.00 0.00 5.24
5312 6474 0.041839 GTGCTCTGTTGTGTTCTGCG 60.042 55.000 0.00 0.00 0.00 5.18
5313 6475 1.016627 TGTGCTCTGTTGTGTTCTGC 58.983 50.000 0.00 0.00 0.00 4.26
5314 6476 1.331756 GGTGTGCTCTGTTGTGTTCTG 59.668 52.381 0.00 0.00 0.00 3.02
5315 6477 1.668419 GGTGTGCTCTGTTGTGTTCT 58.332 50.000 0.00 0.00 0.00 3.01
5321 6483 2.839486 TTAGAGGGTGTGCTCTGTTG 57.161 50.000 0.00 0.00 0.00 3.33
5332 6494 4.965532 AGTTCTAGTGCATGATTAGAGGGT 59.034 41.667 0.00 0.00 0.00 4.34
5344 6506 4.461431 TCGGTCTTTGATAGTTCTAGTGCA 59.539 41.667 0.00 0.00 0.00 4.57
5345 6507 4.995124 TCGGTCTTTGATAGTTCTAGTGC 58.005 43.478 0.00 0.00 0.00 4.40
5346 6508 7.884816 TTTTCGGTCTTTGATAGTTCTAGTG 57.115 36.000 0.00 0.00 0.00 2.74
5349 6511 9.798994 GAGTATTTTCGGTCTTTGATAGTTCTA 57.201 33.333 0.00 0.00 0.00 2.10
5350 6512 7.488471 CGAGTATTTTCGGTCTTTGATAGTTCT 59.512 37.037 0.00 0.00 36.95 3.01
5351 6513 7.275123 ACGAGTATTTTCGGTCTTTGATAGTTC 59.725 37.037 0.00 0.00 44.57 3.01
5354 6516 6.973474 AGACGAGTATTTTCGGTCTTTGATAG 59.027 38.462 0.00 0.00 44.57 2.08
5357 6519 5.130292 AGACGAGTATTTTCGGTCTTTGA 57.870 39.130 0.00 0.00 44.57 2.69
5358 6520 5.634020 AGAAGACGAGTATTTTCGGTCTTTG 59.366 40.000 6.23 0.00 44.57 2.77
5359 6521 5.780984 AGAAGACGAGTATTTTCGGTCTTT 58.219 37.500 6.23 0.00 44.57 2.52
5360 6522 5.388408 AGAAGACGAGTATTTTCGGTCTT 57.612 39.130 4.57 4.57 44.57 3.01
5361 6523 5.388408 AAGAAGACGAGTATTTTCGGTCT 57.612 39.130 0.00 0.00 44.57 3.85
5362 6524 7.752557 ATAAAGAAGACGAGTATTTTCGGTC 57.247 36.000 0.00 0.00 44.57 4.79
5363 6525 7.816031 TGAATAAAGAAGACGAGTATTTTCGGT 59.184 33.333 0.00 0.00 44.57 4.69
5364 6526 8.181487 TGAATAAAGAAGACGAGTATTTTCGG 57.819 34.615 0.00 0.00 44.57 4.30
5370 6532 9.653287 TGTCAATTGAATAAAGAAGACGAGTAT 57.347 29.630 10.35 0.00 0.00 2.12
5371 6533 9.483916 TTGTCAATTGAATAAAGAAGACGAGTA 57.516 29.630 10.35 0.00 0.00 2.59
5372 6534 7.962964 TGTCAATTGAATAAAGAAGACGAGT 57.037 32.000 10.35 0.00 0.00 4.18
5373 6535 7.479916 GCTTGTCAATTGAATAAAGAAGACGAG 59.520 37.037 21.95 12.43 38.61 4.18
5374 6536 7.041440 TGCTTGTCAATTGAATAAAGAAGACGA 60.041 33.333 21.95 4.43 0.00 4.20
5375 6537 7.059945 GTGCTTGTCAATTGAATAAAGAAGACG 59.940 37.037 21.95 6.69 0.00 4.18
5376 6538 7.327032 GGTGCTTGTCAATTGAATAAAGAAGAC 59.673 37.037 21.95 15.97 0.00 3.01
5377 6539 7.231317 AGGTGCTTGTCAATTGAATAAAGAAGA 59.769 33.333 21.95 8.87 0.00 2.87
5378 6540 7.373493 AGGTGCTTGTCAATTGAATAAAGAAG 58.627 34.615 21.95 11.68 0.00 2.85
5379 6541 7.288810 AGGTGCTTGTCAATTGAATAAAGAA 57.711 32.000 21.95 13.85 0.00 2.52
5380 6542 6.899393 AGGTGCTTGTCAATTGAATAAAGA 57.101 33.333 21.95 10.46 0.00 2.52
5381 6543 6.306356 CGAAGGTGCTTGTCAATTGAATAAAG 59.694 38.462 10.35 14.54 0.00 1.85
5382 6544 6.148948 CGAAGGTGCTTGTCAATTGAATAAA 58.851 36.000 10.35 4.64 0.00 1.40
5383 6545 5.698832 CGAAGGTGCTTGTCAATTGAATAA 58.301 37.500 10.35 7.87 0.00 1.40
5384 6546 5.295431 CGAAGGTGCTTGTCAATTGAATA 57.705 39.130 10.35 0.00 0.00 1.75
5385 6547 4.164822 CGAAGGTGCTTGTCAATTGAAT 57.835 40.909 10.35 0.00 0.00 2.57
5386 6548 3.624326 CGAAGGTGCTTGTCAATTGAA 57.376 42.857 10.35 0.00 0.00 2.69
5405 6567 4.156922 TCAAAAACAAGGTGTATATGGCCG 59.843 41.667 0.00 0.00 0.00 6.13
5439 6601 9.878667 AATGATGCAATTGTGATTGAATAAAGA 57.121 25.926 7.40 0.00 40.85 2.52
5478 6643 3.081710 TCGCCTCCGGATGAGATAATA 57.918 47.619 11.34 0.00 44.42 0.98
5491 6656 4.020543 AGTATCTAGATGGATTCGCCTCC 58.979 47.826 15.79 0.00 37.63 4.30
5506 6671 5.103643 TGGCCAAGTTCTCTCCTAGTATCTA 60.104 44.000 0.61 0.00 0.00 1.98
5510 6675 3.468071 TGGCCAAGTTCTCTCCTAGTA 57.532 47.619 0.61 0.00 0.00 1.82
5511 6676 2.327325 TGGCCAAGTTCTCTCCTAGT 57.673 50.000 0.61 0.00 0.00 2.57
5512 6677 3.922171 ATTGGCCAAGTTCTCTCCTAG 57.078 47.619 24.94 0.00 0.00 3.02
5513 6678 3.587061 TGAATTGGCCAAGTTCTCTCCTA 59.413 43.478 24.94 7.87 0.00 2.94
5514 6679 2.376518 TGAATTGGCCAAGTTCTCTCCT 59.623 45.455 24.94 0.00 0.00 3.69
5515 6680 2.795329 TGAATTGGCCAAGTTCTCTCC 58.205 47.619 24.94 8.69 0.00 3.71
5516 6681 4.012374 TCATGAATTGGCCAAGTTCTCTC 58.988 43.478 24.94 9.45 0.00 3.20
5517 6682 4.038271 TCATGAATTGGCCAAGTTCTCT 57.962 40.909 24.94 14.51 0.00 3.10
5518 6683 4.789012 TTCATGAATTGGCCAAGTTCTC 57.211 40.909 24.94 16.74 0.00 2.87
5519 6684 4.773674 TGATTCATGAATTGGCCAAGTTCT 59.226 37.500 24.94 9.78 0.00 3.01
5520 6685 5.075858 TGATTCATGAATTGGCCAAGTTC 57.924 39.130 24.94 23.79 0.00 3.01
5522 6687 5.221682 TGTTTGATTCATGAATTGGCCAAGT 60.222 36.000 24.94 22.71 0.00 3.16
5523 6688 5.239351 TGTTTGATTCATGAATTGGCCAAG 58.761 37.500 24.94 9.92 0.00 3.61
5525 6690 4.886496 TGTTTGATTCATGAATTGGCCA 57.114 36.364 21.57 12.20 0.00 5.36
5527 6692 6.072733 CGTTTTGTTTGATTCATGAATTGGC 58.927 36.000 21.57 10.12 0.00 4.52
5528 6693 7.042858 TCACGTTTTGTTTGATTCATGAATTGG 60.043 33.333 21.57 5.35 0.00 3.16
5530 6695 8.592105 ATCACGTTTTGTTTGATTCATGAATT 57.408 26.923 21.57 6.27 0.00 2.17
5531 6696 8.489559 CAATCACGTTTTGTTTGATTCATGAAT 58.510 29.630 20.85 20.85 37.78 2.57
5532 6697 7.490725 ACAATCACGTTTTGTTTGATTCATGAA 59.509 29.630 11.26 11.26 37.78 2.57
5533 6698 6.977502 ACAATCACGTTTTGTTTGATTCATGA 59.022 30.769 7.63 0.00 37.78 3.07
5537 6702 5.108405 CCGACAATCACGTTTTGTTTGATTC 60.108 40.000 13.29 1.74 37.78 2.52
5538 6703 4.737765 CCGACAATCACGTTTTGTTTGATT 59.262 37.500 13.29 2.82 39.95 2.57
5540 6705 3.374367 TCCGACAATCACGTTTTGTTTGA 59.626 39.130 13.29 10.50 37.15 2.69
5542 6707 3.623960 TCTCCGACAATCACGTTTTGTTT 59.376 39.130 13.29 0.00 37.43 2.83
5543 6708 3.199677 TCTCCGACAATCACGTTTTGTT 58.800 40.909 13.29 0.66 37.43 2.83
5544 6709 2.828877 TCTCCGACAATCACGTTTTGT 58.171 42.857 12.22 12.22 39.91 2.83
5545 6710 3.799035 CTTCTCCGACAATCACGTTTTG 58.201 45.455 6.47 6.47 0.00 2.44
5546 6711 2.223377 GCTTCTCCGACAATCACGTTTT 59.777 45.455 0.00 0.00 0.00 2.43
5547 6712 1.798813 GCTTCTCCGACAATCACGTTT 59.201 47.619 0.00 0.00 0.00 3.60
5548 6713 1.429463 GCTTCTCCGACAATCACGTT 58.571 50.000 0.00 0.00 0.00 3.99
5549 6714 0.389948 GGCTTCTCCGACAATCACGT 60.390 55.000 0.00 0.00 0.00 4.49
5550 6715 0.108615 AGGCTTCTCCGACAATCACG 60.109 55.000 0.00 0.00 40.77 4.35
5551 6716 2.003301 GAAGGCTTCTCCGACAATCAC 58.997 52.381 19.83 0.00 40.77 3.06
5552 6717 1.066143 GGAAGGCTTCTCCGACAATCA 60.066 52.381 25.25 0.00 40.77 2.57
5553 6718 1.208293 AGGAAGGCTTCTCCGACAATC 59.792 52.381 25.25 6.71 40.77 2.67
5554 6719 1.280457 AGGAAGGCTTCTCCGACAAT 58.720 50.000 25.25 1.01 40.77 2.71
5555 6720 1.002087 GAAGGAAGGCTTCTCCGACAA 59.998 52.381 25.25 0.00 40.77 3.18
5556 6721 0.608640 GAAGGAAGGCTTCTCCGACA 59.391 55.000 25.25 0.00 40.77 4.35
5557 6722 0.608640 TGAAGGAAGGCTTCTCCGAC 59.391 55.000 25.25 9.52 40.77 4.79
5558 6723 0.898320 CTGAAGGAAGGCTTCTCCGA 59.102 55.000 25.25 8.04 40.77 4.55
5559 6724 0.898320 TCTGAAGGAAGGCTTCTCCG 59.102 55.000 25.25 13.10 40.77 4.63
5595 6764 3.191371 GCAAAATTGAGGTTGTCTCCGAT 59.809 43.478 0.00 0.00 41.76 4.18
5597 6766 2.554032 AGCAAAATTGAGGTTGTCTCCG 59.446 45.455 0.00 0.00 41.76 4.63
5600 6769 5.183904 GGATGTAGCAAAATTGAGGTTGTCT 59.816 40.000 0.00 0.00 0.00 3.41
5613 6782 3.317711 CACAAACAGTGGGATGTAGCAAA 59.682 43.478 0.00 0.00 44.69 3.68
5636 6805 7.653647 TGCTGTAACATTTGGGTTAAACTTAG 58.346 34.615 0.00 0.00 35.20 2.18
5669 6838 5.556355 TTGCTATGACTCATTTTCTGCTG 57.444 39.130 0.00 0.00 0.00 4.41
5683 6852 7.750229 ATGAAAGACTGAACTTTTGCTATGA 57.250 32.000 0.00 0.00 39.71 2.15
5697 6866 3.973657 AGTTGCAGCAAATGAAAGACTG 58.026 40.909 10.11 0.00 0.00 3.51
5698 6867 5.474532 TCATAGTTGCAGCAAATGAAAGACT 59.525 36.000 18.28 7.78 0.00 3.24
5700 6869 5.963176 TCATAGTTGCAGCAAATGAAAGA 57.037 34.783 18.28 7.52 0.00 2.52
5716 6885 8.582437 CCAAGATGATAATGGCAAAATCATAGT 58.418 33.333 21.14 12.72 39.76 2.12
5723 6892 7.664552 ATTCTCCAAGATGATAATGGCAAAA 57.335 32.000 0.00 0.00 34.13 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.