Multiple sequence alignment - TraesCS1A01G261800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G261800 chr1A 100.000 4272 0 0 1 4272 456324685 456320414 0.000000e+00 7890.0
1 TraesCS1A01G261800 chr1A 95.390 282 13 0 2222 2503 41902542 41902261 2.340000e-122 449.0
2 TraesCS1A01G261800 chr1A 94.152 171 10 0 3 173 480593781 480593951 1.180000e-65 261.0
3 TraesCS1A01G261800 chr1B 94.192 2049 76 28 177 2217 478584650 478582637 0.000000e+00 3085.0
4 TraesCS1A01G261800 chr1B 94.118 969 36 5 2580 3542 478582528 478581575 0.000000e+00 1454.0
5 TraesCS1A01G261800 chr1B 95.749 541 12 6 3608 4147 478580063 478579533 0.000000e+00 861.0
6 TraesCS1A01G261800 chr1B 95.035 282 13 1 2222 2503 687414947 687415227 3.920000e-120 442.0
7 TraesCS1A01G261800 chr1B 91.304 184 13 3 1 184 518263847 518264027 9.170000e-62 248.0
8 TraesCS1A01G261800 chr1D 93.582 1714 64 21 511 2217 355699403 355697729 0.000000e+00 2514.0
9 TraesCS1A01G261800 chr1D 92.665 1595 44 22 2580 4148 355697619 355696072 0.000000e+00 2230.0
10 TraesCS1A01G261800 chr1D 96.439 337 10 1 194 528 355699806 355699470 4.830000e-154 555.0
11 TraesCS1A01G261800 chr1D 93.182 176 12 0 3 178 199421478 199421303 4.240000e-65 259.0
12 TraesCS1A01G261800 chr1D 89.655 87 5 3 4154 4238 13358929 13359013 1.620000e-19 108.0
13 TraesCS1A01G261800 chr5A 95.745 282 12 0 2222 2503 637058117 637058398 5.040000e-124 455.0
14 TraesCS1A01G261800 chr5A 94.700 283 15 0 2221 2503 383894541 383894823 1.410000e-119 440.0
15 TraesCS1A01G261800 chr3B 95.390 282 13 0 2222 2503 58625644 58625925 2.340000e-122 449.0
16 TraesCS1A01G261800 chr3B 95.018 281 14 0 2222 2502 58640671 58640951 3.920000e-120 442.0
17 TraesCS1A01G261800 chr3B 92.776 263 15 4 1360 1620 675281921 675281661 1.120000e-100 377.0
18 TraesCS1A01G261800 chr3B 90.857 175 15 1 1099 1273 675282185 675282012 2.570000e-57 233.0
19 TraesCS1A01G261800 chr3B 78.988 257 38 15 1355 1605 678548536 678548782 1.230000e-35 161.0
20 TraesCS1A01G261800 chr6A 94.406 286 16 0 2221 2506 6890680 6890395 1.410000e-119 440.0
21 TraesCS1A01G261800 chr7A 93.537 294 19 0 2221 2514 31581195 31580902 5.070000e-119 438.0
22 TraesCS1A01G261800 chr7A 93.537 294 19 0 2214 2507 116489685 116489392 5.070000e-119 438.0
23 TraesCS1A01G261800 chr7A 88.446 251 24 4 1358 1604 458934574 458934325 8.980000e-77 298.0
24 TraesCS1A01G261800 chr7A 89.796 147 15 0 1129 1275 458934922 458934776 5.640000e-44 189.0
25 TraesCS1A01G261800 chr3D 92.395 263 16 4 1360 1620 512707435 512707175 5.220000e-99 372.0
26 TraesCS1A01G261800 chr3D 90.857 175 15 1 1099 1273 512707699 512707526 2.570000e-57 233.0
27 TraesCS1A01G261800 chr3D 88.095 84 10 0 4155 4238 367419494 367419411 2.720000e-17 100.0
28 TraesCS1A01G261800 chr3A 92.395 263 16 4 1360 1620 648311910 648311650 5.220000e-99 372.0
29 TraesCS1A01G261800 chr3A 90.286 175 16 1 1099 1273 648312177 648312004 1.200000e-55 228.0
30 TraesCS1A01G261800 chr7D 88.400 250 26 2 1358 1604 401093670 401093421 8.980000e-77 298.0
31 TraesCS1A01G261800 chr7D 94.400 125 7 0 4148 4272 393036905 393037029 4.360000e-45 193.0
32 TraesCS1A01G261800 chr7D 89.796 147 15 0 1129 1275 401094022 401093876 5.640000e-44 189.0
33 TraesCS1A01G261800 chr7D 88.764 89 5 4 4153 4238 92277392 92277478 2.100000e-18 104.0
34 TraesCS1A01G261800 chr7D 78.014 141 21 9 1128 1263 34151675 34151540 3.540000e-11 80.5
35 TraesCS1A01G261800 chr7D 95.918 49 1 1 4151 4199 388126129 388126082 1.270000e-10 78.7
36 TraesCS1A01G261800 chr7B 87.600 250 28 2 1358 1604 410620577 410620328 1.940000e-73 287.0
37 TraesCS1A01G261800 chr7B 92.614 176 13 0 3 178 750566998 750566823 1.970000e-63 254.0
38 TraesCS1A01G261800 chr7B 90.476 147 14 0 1129 1275 410620930 410620784 1.210000e-45 195.0
39 TraesCS1A01G261800 chr5B 93.855 179 10 1 1 178 609842638 609842460 7.040000e-68 268.0
40 TraesCS1A01G261800 chr4D 93.714 175 11 0 4 178 233079270 233079444 3.280000e-66 263.0
41 TraesCS1A01G261800 chr4D 76.151 239 47 6 1374 1604 485764233 485763997 2.700000e-22 117.0
42 TraesCS1A01G261800 chr5D 92.778 180 12 1 1 179 220730109 220729930 4.240000e-65 259.0
43 TraesCS1A01G261800 chr4B 93.143 175 12 0 4 178 232098620 232098794 1.520000e-64 257.0
44 TraesCS1A01G261800 chr2D 93.182 176 9 3 4 178 74147026 74146853 5.480000e-64 255.0
45 TraesCS1A01G261800 chr2B 94.262 122 6 1 4151 4272 762069401 762069281 7.290000e-43 185.0
46 TraesCS1A01G261800 chr6B 95.122 82 4 0 4155 4236 169229921 169229840 3.470000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G261800 chr1A 456320414 456324685 4271 True 7890.000000 7890 100.000000 1 4272 1 chr1A.!!$R2 4271
1 TraesCS1A01G261800 chr1B 478579533 478584650 5117 True 1800.000000 3085 94.686333 177 4147 3 chr1B.!!$R1 3970
2 TraesCS1A01G261800 chr1D 355696072 355699806 3734 True 1766.333333 2514 94.228667 194 4148 3 chr1D.!!$R2 3954
3 TraesCS1A01G261800 chr3B 675281661 675282185 524 True 305.000000 377 91.816500 1099 1620 2 chr3B.!!$R1 521
4 TraesCS1A01G261800 chr7A 458934325 458934922 597 True 243.500000 298 89.121000 1129 1604 2 chr7A.!!$R3 475
5 TraesCS1A01G261800 chr3D 512707175 512707699 524 True 302.500000 372 91.626000 1099 1620 2 chr3D.!!$R2 521
6 TraesCS1A01G261800 chr3A 648311650 648312177 527 True 300.000000 372 91.340500 1099 1620 2 chr3A.!!$R1 521
7 TraesCS1A01G261800 chr7D 401093421 401094022 601 True 243.500000 298 89.098000 1129 1604 2 chr7D.!!$R3 475
8 TraesCS1A01G261800 chr7B 410620328 410620930 602 True 241.000000 287 89.038000 1129 1604 2 chr7B.!!$R2 475


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.037046 GCGGAGTAAAAAGGACCGGA 60.037 55.000 9.46 0.00 43.15 5.14 F
1023 1114 0.526524 GCAGAGACATCGACGAAGGG 60.527 60.000 0.00 0.00 0.00 3.95 F
1657 1887 0.376852 GTAATTGCCGCGATCAAGCA 59.623 50.000 8.23 4.98 36.85 3.91 F
2216 2447 2.032204 CCACCTCGCTAGTATCACGTAC 60.032 54.545 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1876 0.247814 ATTTCGCTTGCTTGATCGCG 60.248 50.0 0.00 0.00 46.28 5.87 R
2496 2727 0.179145 CTTACACGAGTACGGCCCTG 60.179 60.0 0.00 0.00 44.46 4.45 R
2626 2892 0.249955 TCTCGGACTGCATGCATGAA 59.750 50.0 30.64 19.89 0.00 2.57 R
3360 3632 0.320421 TCAGAGTTAACCGTGGCTGC 60.320 55.0 0.88 0.00 0.00 5.25 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.936070 ACATCCACAATGTCAAATCAATATTG 57.064 30.769 9.29 9.29 45.78 1.90
33 34 8.533657 ACATCCACAATGTCAAATCAATATTGT 58.466 29.630 14.97 0.00 45.78 2.71
34 35 9.373603 CATCCACAATGTCAAATCAATATTGTT 57.626 29.630 14.97 4.27 39.25 2.83
153 154 7.389603 TGACTTGATACAAATCTAATACGCG 57.610 36.000 3.53 3.53 32.93 6.01
154 155 6.419710 TGACTTGATACAAATCTAATACGCGG 59.580 38.462 12.47 0.00 32.93 6.46
155 156 6.509656 ACTTGATACAAATCTAATACGCGGA 58.490 36.000 12.47 0.00 32.93 5.54
156 157 6.641314 ACTTGATACAAATCTAATACGCGGAG 59.359 38.462 12.47 1.75 32.93 4.63
157 158 6.080648 TGATACAAATCTAATACGCGGAGT 57.919 37.500 12.47 2.60 32.93 3.85
158 159 7.205737 TGATACAAATCTAATACGCGGAGTA 57.794 36.000 12.47 4.11 34.94 2.59
159 160 7.650890 TGATACAAATCTAATACGCGGAGTAA 58.349 34.615 12.47 0.00 34.49 2.24
160 161 8.136800 TGATACAAATCTAATACGCGGAGTAAA 58.863 33.333 12.47 0.00 34.49 2.01
161 162 8.876275 ATACAAATCTAATACGCGGAGTAAAA 57.124 30.769 12.47 0.00 39.04 1.52
162 163 7.599630 ACAAATCTAATACGCGGAGTAAAAA 57.400 32.000 12.47 0.00 39.04 1.94
163 164 7.681903 ACAAATCTAATACGCGGAGTAAAAAG 58.318 34.615 12.47 0.00 39.04 2.27
164 165 6.839820 AATCTAATACGCGGAGTAAAAAGG 57.160 37.500 12.47 0.00 39.04 3.11
165 166 5.581126 TCTAATACGCGGAGTAAAAAGGA 57.419 39.130 12.47 0.00 39.04 3.36
166 167 5.343249 TCTAATACGCGGAGTAAAAAGGAC 58.657 41.667 12.47 0.00 39.04 3.85
167 168 2.368655 TACGCGGAGTAAAAAGGACC 57.631 50.000 12.47 0.00 31.26 4.46
168 169 0.668401 ACGCGGAGTAAAAAGGACCG 60.668 55.000 12.47 0.00 45.26 4.79
169 170 1.356527 CGCGGAGTAAAAAGGACCGG 61.357 60.000 0.00 0.00 43.15 5.28
170 171 0.037046 GCGGAGTAAAAAGGACCGGA 60.037 55.000 9.46 0.00 43.15 5.14
171 172 2.005560 GCGGAGTAAAAAGGACCGGAG 61.006 57.143 9.46 0.00 43.15 4.63
192 193 5.163774 GGAGGAAGTACAGAGTACAACGTAG 60.164 48.000 9.68 0.00 0.00 3.51
263 264 1.261089 CGTGACGGCTCTAGCTACTAC 59.739 57.143 0.00 0.00 41.70 2.73
397 398 2.751806 AGGAACACTACGTGTACCTAGC 59.248 50.000 0.00 0.00 46.79 3.42
419 420 5.893824 AGCCCCTTGTATTCTCCTTTTATTG 59.106 40.000 0.00 0.00 0.00 1.90
450 451 2.355756 CCATGCACCTTCGGTAATTCAG 59.644 50.000 0.00 0.00 32.11 3.02
583 670 6.361768 TCCATGTACAAATATACCGGCATA 57.638 37.500 0.00 0.00 0.00 3.14
586 673 7.335673 TCCATGTACAAATATACCGGCATAATG 59.664 37.037 0.00 5.33 0.00 1.90
599 686 7.753309 ACCGGCATAATGTAAGCAATTATAA 57.247 32.000 0.00 0.00 0.00 0.98
600 687 8.348285 ACCGGCATAATGTAAGCAATTATAAT 57.652 30.769 0.00 0.00 0.00 1.28
643 730 8.991243 ATATCACAAAAAGGTTTCATCATGTG 57.009 30.769 0.00 0.00 38.54 3.21
678 765 6.870769 ACATGTACATAGTTGTAGTACCACC 58.129 40.000 8.32 0.00 38.98 4.61
717 804 3.927555 TGCTTAGTAGGCACCACAC 57.072 52.632 2.27 0.00 34.56 3.82
761 852 5.068723 ACCAAGTTAATCATCGATACTCCGT 59.931 40.000 0.00 0.00 0.00 4.69
785 876 7.521423 CGTTTCAATCAAAACTAACCAGGATCA 60.521 37.037 0.00 0.00 37.06 2.92
786 877 7.831691 TTCAATCAAAACTAACCAGGATCAA 57.168 32.000 0.00 0.00 0.00 2.57
787 878 8.421249 TTCAATCAAAACTAACCAGGATCAAT 57.579 30.769 0.00 0.00 0.00 2.57
788 879 7.829725 TCAATCAAAACTAACCAGGATCAATG 58.170 34.615 0.00 0.00 0.00 2.82
789 880 6.780457 ATCAAAACTAACCAGGATCAATGG 57.220 37.500 13.26 13.26 43.87 3.16
790 881 5.886609 TCAAAACTAACCAGGATCAATGGA 58.113 37.500 19.96 1.33 40.51 3.41
791 882 6.493166 TCAAAACTAACCAGGATCAATGGAT 58.507 36.000 19.96 12.30 40.51 3.41
883 974 0.963355 TACTTGCGCACCCCCAAATC 60.963 55.000 11.12 0.00 0.00 2.17
1023 1114 0.526524 GCAGAGACATCGACGAAGGG 60.527 60.000 0.00 0.00 0.00 3.95
1070 1164 0.840722 GAAGGAGGGGAAGTGGGTGA 60.841 60.000 0.00 0.00 0.00 4.02
1126 1220 1.207085 GACTCGCACGAGAACGACT 59.793 57.895 25.53 2.65 44.53 4.18
1251 1345 2.054232 TCCTCGATCTCTACCGCTTT 57.946 50.000 0.00 0.00 0.00 3.51
1281 1375 0.683504 AGCTCCCCGGTACACACTAG 60.684 60.000 0.00 0.00 0.00 2.57
1283 1377 0.683504 CTCCCCGGTACACACTAGCT 60.684 60.000 0.00 0.00 0.00 3.32
1285 1379 1.030457 CCCCGGTACACACTAGCTAG 58.970 60.000 19.44 19.44 0.00 3.42
1286 1380 1.409241 CCCCGGTACACACTAGCTAGA 60.409 57.143 27.45 0.89 0.00 2.43
1292 1386 4.483311 GGTACACACTAGCTAGAACACAC 58.517 47.826 27.45 16.75 0.00 3.82
1294 1388 4.244425 ACACACTAGCTAGAACACACAG 57.756 45.455 27.45 9.73 0.00 3.66
1295 1389 2.989840 CACACTAGCTAGAACACACAGC 59.010 50.000 27.45 0.00 35.49 4.40
1298 1392 2.028930 ACTAGCTAGAACACACAGCCAC 60.029 50.000 27.45 0.00 35.88 5.01
1646 1876 5.760743 GGATCTCTTCTACAAGGTAATTGCC 59.239 44.000 4.07 4.07 43.15 4.52
1647 1877 4.755411 TCTCTTCTACAAGGTAATTGCCG 58.245 43.478 6.95 0.00 43.15 5.69
1653 1883 1.013596 CAAGGTAATTGCCGCGATCA 58.986 50.000 8.23 1.40 30.65 2.92
1657 1887 0.376852 GTAATTGCCGCGATCAAGCA 59.623 50.000 8.23 4.98 36.85 3.91
1667 1897 3.051606 GCGATCAAGCAAGCGAAATTA 57.948 42.857 0.00 0.00 37.05 1.40
1732 1963 6.039159 GGAAATTCCTCATCTCTTGATTGGTC 59.961 42.308 4.46 0.00 32.72 4.02
1742 1973 7.285172 TCATCTCTTGATTGGTCTTTGTTTTGA 59.715 33.333 0.00 0.00 0.00 2.69
1743 1974 7.031226 TCTCTTGATTGGTCTTTGTTTTGAG 57.969 36.000 0.00 0.00 0.00 3.02
1746 1977 7.835822 TCTTGATTGGTCTTTGTTTTGAGAAA 58.164 30.769 0.00 0.00 0.00 2.52
1768 1999 8.482128 AGAAATCATGGGAAGCTAGCTATATAC 58.518 37.037 19.70 2.59 0.00 1.47
1824 2055 4.552166 TCTGCTTTTTGTTCACTGCTAC 57.448 40.909 0.00 0.00 0.00 3.58
1956 2187 4.332543 ACATATGGACATGTACAAACGCTG 59.667 41.667 16.35 10.44 37.37 5.18
1987 2218 9.336171 GTTGAATTCAGAATTCCTCTTATAGCT 57.664 33.333 26.49 0.00 45.23 3.32
1988 2219 8.899427 TGAATTCAGAATTCCTCTTATAGCTG 57.101 34.615 26.49 0.00 45.23 4.24
2025 2256 4.205587 GCATGTCCTCCAGATTCTTCAAT 58.794 43.478 0.00 0.00 0.00 2.57
2216 2447 2.032204 CCACCTCGCTAGTATCACGTAC 60.032 54.545 0.00 0.00 0.00 3.67
2217 2448 2.610833 CACCTCGCTAGTATCACGTACA 59.389 50.000 0.00 0.00 35.67 2.90
2218 2449 2.611292 ACCTCGCTAGTATCACGTACAC 59.389 50.000 0.00 0.00 35.67 2.90
2219 2450 2.348311 CCTCGCTAGTATCACGTACACG 60.348 54.545 0.00 0.00 46.33 4.49
2231 2462 2.712057 CGTACACGTAGAGGGTGTTT 57.288 50.000 2.67 0.00 45.84 2.83
2232 2463 2.322161 CGTACACGTAGAGGGTGTTTG 58.678 52.381 2.67 0.00 45.84 2.93
2233 2464 2.287788 CGTACACGTAGAGGGTGTTTGT 60.288 50.000 2.67 0.00 45.84 2.83
2234 2465 2.994186 ACACGTAGAGGGTGTTTGTT 57.006 45.000 0.00 0.00 45.84 2.83
2235 2466 3.271055 ACACGTAGAGGGTGTTTGTTT 57.729 42.857 0.00 0.00 45.84 2.83
2236 2467 3.613030 ACACGTAGAGGGTGTTTGTTTT 58.387 40.909 0.00 0.00 45.84 2.43
2237 2468 3.624410 ACACGTAGAGGGTGTTTGTTTTC 59.376 43.478 0.00 0.00 45.84 2.29
2238 2469 3.623960 CACGTAGAGGGTGTTTGTTTTCA 59.376 43.478 0.00 0.00 0.00 2.69
2239 2470 4.274950 CACGTAGAGGGTGTTTGTTTTCAT 59.725 41.667 0.00 0.00 0.00 2.57
2240 2471 4.274950 ACGTAGAGGGTGTTTGTTTTCATG 59.725 41.667 0.00 0.00 0.00 3.07
2241 2472 4.320202 CGTAGAGGGTGTTTGTTTTCATGG 60.320 45.833 0.00 0.00 0.00 3.66
2242 2473 3.909732 AGAGGGTGTTTGTTTTCATGGA 58.090 40.909 0.00 0.00 0.00 3.41
2243 2474 3.636764 AGAGGGTGTTTGTTTTCATGGAC 59.363 43.478 0.00 0.00 0.00 4.02
2244 2475 3.636764 GAGGGTGTTTGTTTTCATGGACT 59.363 43.478 0.00 0.00 0.00 3.85
2245 2476 4.030216 AGGGTGTTTGTTTTCATGGACTT 58.970 39.130 0.00 0.00 0.00 3.01
2246 2477 5.205056 AGGGTGTTTGTTTTCATGGACTTA 58.795 37.500 0.00 0.00 0.00 2.24
2247 2478 5.838521 AGGGTGTTTGTTTTCATGGACTTAT 59.161 36.000 0.00 0.00 0.00 1.73
2248 2479 6.326323 AGGGTGTTTGTTTTCATGGACTTATT 59.674 34.615 0.00 0.00 0.00 1.40
2249 2480 6.423604 GGGTGTTTGTTTTCATGGACTTATTG 59.576 38.462 0.00 0.00 0.00 1.90
2250 2481 6.423604 GGTGTTTGTTTTCATGGACTTATTGG 59.576 38.462 0.00 0.00 0.00 3.16
2251 2482 6.983890 GTGTTTGTTTTCATGGACTTATTGGT 59.016 34.615 0.00 0.00 0.00 3.67
2252 2483 7.169140 GTGTTTGTTTTCATGGACTTATTGGTC 59.831 37.037 0.00 0.00 35.66 4.02
2253 2484 7.069331 TGTTTGTTTTCATGGACTTATTGGTCT 59.931 33.333 0.00 0.00 36.55 3.85
2254 2485 8.573035 GTTTGTTTTCATGGACTTATTGGTCTA 58.427 33.333 0.00 0.00 36.55 2.59
2255 2486 7.921786 TGTTTTCATGGACTTATTGGTCTAG 57.078 36.000 0.00 0.00 36.55 2.43
2256 2487 6.884295 TGTTTTCATGGACTTATTGGTCTAGG 59.116 38.462 0.00 0.00 36.55 3.02
2257 2488 5.630415 TTCATGGACTTATTGGTCTAGGG 57.370 43.478 0.00 0.00 36.55 3.53
2258 2489 4.890988 TCATGGACTTATTGGTCTAGGGA 58.109 43.478 0.00 0.00 36.55 4.20
2259 2490 4.654262 TCATGGACTTATTGGTCTAGGGAC 59.346 45.833 0.00 0.00 41.43 4.46
2260 2491 4.348020 TGGACTTATTGGTCTAGGGACT 57.652 45.455 0.00 0.00 41.82 3.85
2261 2492 4.695606 TGGACTTATTGGTCTAGGGACTT 58.304 43.478 0.00 0.00 41.82 3.01
2262 2493 5.845734 TGGACTTATTGGTCTAGGGACTTA 58.154 41.667 0.00 0.00 41.82 2.24
2263 2494 6.266080 TGGACTTATTGGTCTAGGGACTTAA 58.734 40.000 0.00 0.00 41.82 1.85
2264 2495 6.731919 TGGACTTATTGGTCTAGGGACTTAAA 59.268 38.462 0.00 0.00 41.82 1.52
2265 2496 7.404980 TGGACTTATTGGTCTAGGGACTTAAAT 59.595 37.037 0.00 0.00 41.82 1.40
2266 2497 8.931568 GGACTTATTGGTCTAGGGACTTAAATA 58.068 37.037 0.00 0.00 41.82 1.40
2292 2523 9.702253 AAGTCTCTATAAGTCTCATCTAAACCA 57.298 33.333 0.00 0.00 0.00 3.67
2293 2524 9.702253 AGTCTCTATAAGTCTCATCTAAACCAA 57.298 33.333 0.00 0.00 0.00 3.67
2298 2529 9.319143 CTATAAGTCTCATCTAAACCAAACAGG 57.681 37.037 0.00 0.00 45.67 4.00
2299 2530 5.825593 AGTCTCATCTAAACCAAACAGGA 57.174 39.130 0.00 0.00 41.22 3.86
2300 2531 5.799213 AGTCTCATCTAAACCAAACAGGAG 58.201 41.667 0.00 0.00 41.22 3.69
2301 2532 4.938226 GTCTCATCTAAACCAAACAGGAGG 59.062 45.833 0.00 0.00 41.22 4.30
2302 2533 4.019321 TCTCATCTAAACCAAACAGGAGGG 60.019 45.833 0.00 0.00 41.22 4.30
2303 2534 3.913799 TCATCTAAACCAAACAGGAGGGA 59.086 43.478 0.00 0.00 41.22 4.20
2304 2535 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
2306 2537 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
2307 2538 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
2308 2539 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
2309 2540 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
2310 2541 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
2311 2542 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
2312 2543 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
2313 2544 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
2314 2545 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
2315 2546 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
2316 2547 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
2317 2548 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
2318 2549 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
2319 2550 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
2320 2551 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
2321 2552 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
2322 2553 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
2323 2554 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
2324 2555 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
2325 2556 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
2326 2557 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
2327 2558 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
2328 2559 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
2329 2560 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
2330 2561 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
2331 2562 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
2332 2563 2.233676 GGACTTAAAGTGGGCATTTGGG 59.766 50.000 0.00 0.00 0.00 4.12
2333 2564 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
2334 2565 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
2335 2566 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
2336 2567 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
2337 2568 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
2338 2569 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
2339 2570 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
2340 2571 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
2341 2572 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
2342 2573 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
2343 2574 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
2344 2575 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
2345 2576 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
2360 2591 5.683876 TGAAATAAGACTCTCAAGGAGGG 57.316 43.478 0.00 0.00 45.83 4.30
2361 2592 5.342017 TGAAATAAGACTCTCAAGGAGGGA 58.658 41.667 0.00 0.00 45.83 4.20
2362 2593 5.187967 TGAAATAAGACTCTCAAGGAGGGAC 59.812 44.000 0.00 0.00 45.83 4.46
2363 2594 4.618378 ATAAGACTCTCAAGGAGGGACT 57.382 45.455 0.00 0.00 45.83 3.85
2364 2595 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
2365 2596 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
2366 2597 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
2367 2598 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
2368 2599 5.701224 AGACTCTCAAGGAGGGACTTATAG 58.299 45.833 0.00 0.00 45.83 1.31
2369 2600 4.810345 ACTCTCAAGGAGGGACTTATAGG 58.190 47.826 0.00 0.00 45.83 2.57
2370 2601 4.156477 CTCTCAAGGAGGGACTTATAGGG 58.844 52.174 0.00 0.00 41.55 3.53
2371 2602 3.797845 TCTCAAGGAGGGACTTATAGGGA 59.202 47.826 0.00 0.00 41.55 4.20
2372 2603 3.898741 CTCAAGGAGGGACTTATAGGGAC 59.101 52.174 0.00 0.00 41.55 4.46
2373 2604 3.536434 TCAAGGAGGGACTTATAGGGACT 59.464 47.826 0.00 0.00 41.55 3.85
2374 2605 4.015541 TCAAGGAGGGACTTATAGGGACTT 60.016 45.833 0.00 0.00 41.55 3.01
2375 2606 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
2376 2607 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
2377 2608 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
2378 2609 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
2379 2610 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
2380 2611 7.076566 AGGAGGGACTTATAGGGACTTATAGTT 59.923 40.741 0.00 0.00 41.55 2.24
2381 2612 8.397172 GGAGGGACTTATAGGGACTTATAGTTA 58.603 40.741 0.00 0.00 41.55 2.24
2382 2613 9.994017 GAGGGACTTATAGGGACTTATAGTTAT 57.006 37.037 0.00 0.00 41.55 1.89
2419 2650 6.408107 AGAGACTTATAAATCCGAGGAACC 57.592 41.667 0.00 0.00 0.00 3.62
2420 2651 5.897824 AGAGACTTATAAATCCGAGGAACCA 59.102 40.000 0.00 0.00 0.00 3.67
2421 2652 6.383147 AGAGACTTATAAATCCGAGGAACCAA 59.617 38.462 0.00 0.00 0.00 3.67
2422 2653 6.954232 AGACTTATAAATCCGAGGAACCAAA 58.046 36.000 0.00 0.00 0.00 3.28
2423 2654 6.822170 AGACTTATAAATCCGAGGAACCAAAC 59.178 38.462 0.00 0.00 0.00 2.93
2424 2655 6.478129 ACTTATAAATCCGAGGAACCAAACA 58.522 36.000 0.00 0.00 0.00 2.83
2425 2656 6.598064 ACTTATAAATCCGAGGAACCAAACAG 59.402 38.462 0.00 0.00 0.00 3.16
2426 2657 2.200373 AATCCGAGGAACCAAACAGG 57.800 50.000 0.00 0.00 45.67 4.00
2440 2671 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
2441 2672 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
2442 2673 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
2443 2674 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
2444 2675 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
2445 2676 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
2446 2677 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
2447 2678 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
2448 2679 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
2449 2680 3.332968 AGGGACTTTTTAGGGACTTGGA 58.667 45.455 0.00 0.00 34.75 3.53
2450 2681 3.725267 AGGGACTTTTTAGGGACTTGGAA 59.275 43.478 0.00 0.00 34.75 3.53
2451 2682 3.825014 GGGACTTTTTAGGGACTTGGAAC 59.175 47.826 0.00 0.00 41.75 3.62
2452 2683 4.447325 GGGACTTTTTAGGGACTTGGAACT 60.447 45.833 0.00 0.00 41.75 3.01
2453 2684 5.138276 GGACTTTTTAGGGACTTGGAACTT 58.862 41.667 0.00 0.00 41.75 2.66
2454 2685 6.301486 GGACTTTTTAGGGACTTGGAACTTA 58.699 40.000 0.00 0.00 41.75 2.24
2455 2686 6.946583 GGACTTTTTAGGGACTTGGAACTTAT 59.053 38.462 0.00 0.00 41.75 1.73
2456 2687 8.105197 GGACTTTTTAGGGACTTGGAACTTATA 58.895 37.037 0.00 0.00 41.75 0.98
2457 2688 9.682465 GACTTTTTAGGGACTTGGAACTTATAT 57.318 33.333 0.00 0.00 41.75 0.86
2458 2689 9.462606 ACTTTTTAGGGACTTGGAACTTATATG 57.537 33.333 0.00 0.00 41.75 1.78
2459 2690 9.462606 CTTTTTAGGGACTTGGAACTTATATGT 57.537 33.333 0.00 0.00 41.75 2.29
2460 2691 9.816787 TTTTTAGGGACTTGGAACTTATATGTT 57.183 29.630 3.79 3.79 41.75 2.71
2463 2694 7.138054 AGGGACTTGGAACTTATATGTTAGG 57.862 40.000 4.12 0.00 27.25 2.69
2464 2695 6.906901 AGGGACTTGGAACTTATATGTTAGGA 59.093 38.462 4.12 0.00 27.25 2.94
2465 2696 6.990939 GGGACTTGGAACTTATATGTTAGGAC 59.009 42.308 4.12 0.00 0.00 3.85
2466 2697 7.147532 GGGACTTGGAACTTATATGTTAGGACT 60.148 40.741 4.12 0.00 0.00 3.85
2467 2698 8.921205 GGACTTGGAACTTATATGTTAGGACTA 58.079 37.037 4.12 0.00 0.00 2.59
2499 2730 6.414732 TCATAGGACTTATGAACCAAACAGG 58.585 40.000 4.87 0.00 43.96 4.00
2500 2731 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
2501 2732 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
2529 2760 6.931838 ACTCGTGTAAGATCTTTGGTATTGA 58.068 36.000 14.36 2.76 0.00 2.57
2552 2783 7.572759 TGACAGTAATTTCTTTAGCTTTGACG 58.427 34.615 0.00 0.00 0.00 4.35
2567 2798 3.781341 TTGACGTGTCGCAGTAAATTC 57.219 42.857 0.00 0.00 0.00 2.17
2626 2892 7.712797 AGTTTATCCGAAGTTCACAAAATGTT 58.287 30.769 3.32 0.00 0.00 2.71
2894 3163 2.693871 ATCATGGACCAGGCCACCC 61.694 63.158 5.01 0.00 41.56 4.61
2895 3164 4.447342 CATGGACCAGGCCACCCC 62.447 72.222 5.01 0.33 41.56 4.95
2903 3172 3.334891 AGGCCACCCCGCACAATA 61.335 61.111 5.01 0.00 39.21 1.90
2904 3173 2.361865 GGCCACCCCGCACAATAA 60.362 61.111 0.00 0.00 0.00 1.40
2905 3174 1.756561 GGCCACCCCGCACAATAAT 60.757 57.895 0.00 0.00 0.00 1.28
2906 3175 1.437160 GCCACCCCGCACAATAATG 59.563 57.895 0.00 0.00 0.00 1.90
2907 3176 1.437160 CCACCCCGCACAATAATGC 59.563 57.895 0.00 0.00 42.48 3.56
2908 3177 1.037030 CCACCCCGCACAATAATGCT 61.037 55.000 0.00 0.00 43.80 3.79
2909 3178 0.381801 CACCCCGCACAATAATGCTC 59.618 55.000 0.00 0.00 43.80 4.26
3233 3502 0.475632 TTGGATCCACCCTGACACCT 60.476 55.000 15.91 0.00 38.00 4.00
3253 3522 3.075005 GGCAGCAGGGACTACGGA 61.075 66.667 0.00 0.00 36.02 4.69
3339 3611 2.749682 CAGTGGGCAGTGGCACTA 59.250 61.111 21.59 0.90 46.28 2.74
3340 3612 1.300963 CAGTGGGCAGTGGCACTAT 59.699 57.895 21.59 0.00 46.28 2.12
3360 3632 7.063456 CACTATGCATAATTCGTAGGTTTTCG 58.937 38.462 8.00 0.00 0.00 3.46
3422 3694 7.504926 TTACATTATACCCTTTCACCACTCT 57.495 36.000 0.00 0.00 0.00 3.24
3423 3695 6.388619 ACATTATACCCTTTCACCACTCTT 57.611 37.500 0.00 0.00 0.00 2.85
3493 3767 5.581605 CACTGATGTTGTAAGCACAAGTTT 58.418 37.500 0.00 0.00 45.18 2.66
3512 3786 6.663944 AGTTTGTGTTCAGTCAGTCTAAAC 57.336 37.500 0.00 0.00 0.00 2.01
3542 3816 5.351740 GCTTCATGTCTTAGTTAACTCCACC 59.648 44.000 12.39 0.00 0.00 4.61
3543 3817 5.416271 TCATGTCTTAGTTAACTCCACCC 57.584 43.478 12.39 0.00 0.00 4.61
3544 3818 3.947910 TGTCTTAGTTAACTCCACCCG 57.052 47.619 12.39 0.00 0.00 5.28
3545 3819 2.564062 TGTCTTAGTTAACTCCACCCGG 59.436 50.000 12.39 0.00 0.00 5.73
3546 3820 2.827921 GTCTTAGTTAACTCCACCCGGA 59.172 50.000 12.39 0.00 39.79 5.14
3547 3821 3.450096 GTCTTAGTTAACTCCACCCGGAT 59.550 47.826 12.39 0.00 41.79 4.18
3548 3822 3.703052 TCTTAGTTAACTCCACCCGGATC 59.297 47.826 12.39 0.00 41.79 3.36
3549 3823 0.822164 AGTTAACTCCACCCGGATCG 59.178 55.000 0.73 0.00 41.79 3.69
3550 3824 0.819582 GTTAACTCCACCCGGATCGA 59.180 55.000 0.73 0.00 41.79 3.59
3551 3825 1.411612 GTTAACTCCACCCGGATCGAT 59.588 52.381 0.73 0.00 41.79 3.59
3552 3826 1.037493 TAACTCCACCCGGATCGATG 58.963 55.000 0.54 0.00 41.79 3.84
3553 3827 0.976073 AACTCCACCCGGATCGATGT 60.976 55.000 0.54 0.00 41.79 3.06
3554 3828 1.068083 CTCCACCCGGATCGATGTG 59.932 63.158 0.54 4.48 41.79 3.21
3555 3829 1.676678 CTCCACCCGGATCGATGTGT 61.677 60.000 0.54 0.00 41.79 3.72
3556 3830 1.220749 CCACCCGGATCGATGTGTT 59.779 57.895 0.54 0.00 31.29 3.32
3557 3831 0.392461 CCACCCGGATCGATGTGTTT 60.392 55.000 0.54 0.00 31.29 2.83
3558 3832 1.134640 CCACCCGGATCGATGTGTTTA 60.135 52.381 0.54 0.00 31.29 2.01
3559 3833 2.623535 CACCCGGATCGATGTGTTTAA 58.376 47.619 0.54 0.00 0.00 1.52
3560 3834 2.350498 CACCCGGATCGATGTGTTTAAC 59.650 50.000 0.54 0.00 0.00 2.01
3572 3846 5.562696 CGATGTGTTTAACAGCAAATGAGGT 60.563 40.000 0.00 0.00 45.81 3.85
3580 3854 9.177304 GTTTAACAGCAAATGAGGTTAGTTTAC 57.823 33.333 0.00 0.00 0.00 2.01
3581 3855 6.952773 AACAGCAAATGAGGTTAGTTTACA 57.047 33.333 0.00 0.00 0.00 2.41
3582 3856 6.313744 ACAGCAAATGAGGTTAGTTTACAC 57.686 37.500 0.00 0.00 0.00 2.90
3583 3857 6.062095 ACAGCAAATGAGGTTAGTTTACACT 58.938 36.000 0.00 0.00 36.99 3.55
3585 3859 6.017109 CAGCAAATGAGGTTAGTTTACACTGT 60.017 38.462 0.00 0.00 34.06 3.55
3616 5355 2.985896 TCACCCAAAATCTAAGCCTCG 58.014 47.619 0.00 0.00 0.00 4.63
3635 5374 0.881796 GGGCAGGCAGTTGTTTCTAC 59.118 55.000 0.00 0.00 0.00 2.59
3641 5380 4.256920 CAGGCAGTTGTTTCTACTAGCAT 58.743 43.478 0.00 0.00 0.00 3.79
3646 5385 7.611855 AGGCAGTTGTTTCTACTAGCATTTAAT 59.388 33.333 0.00 0.00 0.00 1.40
3647 5386 7.910683 GGCAGTTGTTTCTACTAGCATTTAATC 59.089 37.037 0.00 0.00 0.00 1.75
3648 5387 8.669243 GCAGTTGTTTCTACTAGCATTTAATCT 58.331 33.333 0.00 0.00 0.00 2.40
3649 5388 9.979270 CAGTTGTTTCTACTAGCATTTAATCTG 57.021 33.333 0.00 0.00 0.00 2.90
3650 5389 8.669243 AGTTGTTTCTACTAGCATTTAATCTGC 58.331 33.333 3.03 3.03 39.97 4.26
3651 5390 8.450964 GTTGTTTCTACTAGCATTTAATCTGCA 58.549 33.333 11.72 0.00 42.15 4.41
3652 5391 8.560355 TGTTTCTACTAGCATTTAATCTGCAA 57.440 30.769 11.72 0.00 42.15 4.08
3653 5392 9.177608 TGTTTCTACTAGCATTTAATCTGCAAT 57.822 29.630 11.72 1.71 42.15 3.56
3910 5667 2.420022 GCATGCATGGTTAGAGTTCGTT 59.580 45.455 27.34 0.00 0.00 3.85
3916 5673 1.862201 TGGTTAGAGTTCGTTTGTGCG 59.138 47.619 0.00 0.00 0.00 5.34
4127 5886 6.155221 TCTCTGCACTCTAGGATGTTTGTTAT 59.845 38.462 0.00 0.00 0.00 1.89
4128 5887 7.342026 TCTCTGCACTCTAGGATGTTTGTTATA 59.658 37.037 0.00 0.00 0.00 0.98
4132 5891 8.046708 TGCACTCTAGGATGTTTGTTATACATT 58.953 33.333 0.00 0.00 36.41 2.71
4151 5910 6.724893 ACATTAATTTAGGTTGTATGGCCC 57.275 37.500 0.00 0.00 0.00 5.80
4152 5911 5.600898 ACATTAATTTAGGTTGTATGGCCCC 59.399 40.000 0.00 0.00 0.00 5.80
4153 5912 2.358322 ATTTAGGTTGTATGGCCCCG 57.642 50.000 0.00 0.00 0.00 5.73
4154 5913 0.394625 TTTAGGTTGTATGGCCCCGC 60.395 55.000 0.00 0.00 0.00 6.13
4155 5914 1.276140 TTAGGTTGTATGGCCCCGCT 61.276 55.000 0.00 0.00 0.00 5.52
4156 5915 1.692173 TAGGTTGTATGGCCCCGCTC 61.692 60.000 0.00 0.00 0.00 5.03
4157 5916 2.590092 GTTGTATGGCCCCGCTCT 59.410 61.111 0.00 0.00 0.00 4.09
4158 5917 1.523938 GTTGTATGGCCCCGCTCTC 60.524 63.158 0.00 0.00 0.00 3.20
4159 5918 3.088941 TTGTATGGCCCCGCTCTCG 62.089 63.158 0.00 0.00 0.00 4.04
4160 5919 4.971125 GTATGGCCCCGCTCTCGC 62.971 72.222 0.00 0.00 0.00 5.03
4177 5936 4.570663 CGAACGCCCCGCTCCTAG 62.571 72.222 0.00 0.00 0.00 3.02
4178 5937 4.222847 GAACGCCCCGCTCCTAGG 62.223 72.222 0.82 0.82 0.00 3.02
4184 5943 3.162154 CCCGCTCCTAGGGTTCCC 61.162 72.222 9.46 0.00 43.89 3.97
4185 5944 2.041819 CCGCTCCTAGGGTTCCCT 60.042 66.667 15.19 15.19 40.06 4.20
4186 5945 2.134933 CCGCTCCTAGGGTTCCCTC 61.135 68.421 14.24 0.00 37.64 4.30
4187 5946 2.491022 CGCTCCTAGGGTTCCCTCG 61.491 68.421 14.24 8.04 37.64 4.63
4188 5947 2.798364 GCTCCTAGGGTTCCCTCGC 61.798 68.421 14.24 9.19 37.64 5.03
4189 5948 2.042230 TCCTAGGGTTCCCTCGCC 60.042 66.667 14.24 0.00 37.64 5.54
4190 5949 3.537874 CCTAGGGTTCCCTCGCCG 61.538 72.222 14.24 2.12 37.64 6.46
4191 5950 4.222847 CTAGGGTTCCCTCGCCGC 62.223 72.222 14.24 0.00 37.64 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.936070 ACAATATTGATTTGACATTGTGGATG 57.064 30.769 22.16 0.00 38.16 3.51
127 128 8.325282 CGCGTATTAGATTTGTATCAAGTCAAA 58.675 33.333 0.00 0.00 37.82 2.69
128 129 7.042992 CCGCGTATTAGATTTGTATCAAGTCAA 60.043 37.037 4.92 2.05 32.95 3.18
129 130 6.419710 CCGCGTATTAGATTTGTATCAAGTCA 59.580 38.462 4.92 0.00 32.95 3.41
130 131 6.639686 TCCGCGTATTAGATTTGTATCAAGTC 59.360 38.462 4.92 0.00 32.95 3.01
131 132 6.509656 TCCGCGTATTAGATTTGTATCAAGT 58.490 36.000 4.92 0.00 32.95 3.16
132 133 6.641314 ACTCCGCGTATTAGATTTGTATCAAG 59.359 38.462 4.92 0.00 32.95 3.02
133 134 6.509656 ACTCCGCGTATTAGATTTGTATCAA 58.490 36.000 4.92 0.00 32.95 2.57
134 135 6.080648 ACTCCGCGTATTAGATTTGTATCA 57.919 37.500 4.92 0.00 32.95 2.15
135 136 8.511465 TTTACTCCGCGTATTAGATTTGTATC 57.489 34.615 4.92 0.00 0.00 2.24
136 137 8.876275 TTTTACTCCGCGTATTAGATTTGTAT 57.124 30.769 4.92 0.00 0.00 2.29
137 138 8.700722 TTTTTACTCCGCGTATTAGATTTGTA 57.299 30.769 4.92 0.00 0.00 2.41
138 139 7.201582 CCTTTTTACTCCGCGTATTAGATTTGT 60.202 37.037 4.92 0.00 0.00 2.83
139 140 7.010738 TCCTTTTTACTCCGCGTATTAGATTTG 59.989 37.037 4.92 0.00 0.00 2.32
140 141 7.010830 GTCCTTTTTACTCCGCGTATTAGATTT 59.989 37.037 4.92 0.00 0.00 2.17
141 142 6.478016 GTCCTTTTTACTCCGCGTATTAGATT 59.522 38.462 4.92 0.00 0.00 2.40
142 143 5.981915 GTCCTTTTTACTCCGCGTATTAGAT 59.018 40.000 4.92 0.00 0.00 1.98
143 144 5.343249 GTCCTTTTTACTCCGCGTATTAGA 58.657 41.667 4.92 0.00 0.00 2.10
144 145 4.505556 GGTCCTTTTTACTCCGCGTATTAG 59.494 45.833 4.92 0.00 0.00 1.73
145 146 4.432712 GGTCCTTTTTACTCCGCGTATTA 58.567 43.478 4.92 0.00 0.00 0.98
146 147 3.264947 GGTCCTTTTTACTCCGCGTATT 58.735 45.455 4.92 0.00 0.00 1.89
147 148 2.736400 CGGTCCTTTTTACTCCGCGTAT 60.736 50.000 4.92 0.00 35.01 3.06
148 149 1.402720 CGGTCCTTTTTACTCCGCGTA 60.403 52.381 4.92 0.00 35.01 4.42
149 150 0.668401 CGGTCCTTTTTACTCCGCGT 60.668 55.000 4.92 0.00 35.01 6.01
150 151 1.356527 CCGGTCCTTTTTACTCCGCG 61.357 60.000 0.00 0.00 39.87 6.46
151 152 0.037046 TCCGGTCCTTTTTACTCCGC 60.037 55.000 0.00 0.00 39.87 5.54
152 153 1.405121 CCTCCGGTCCTTTTTACTCCG 60.405 57.143 0.00 0.00 40.72 4.63
153 154 1.904537 TCCTCCGGTCCTTTTTACTCC 59.095 52.381 0.00 0.00 0.00 3.85
154 155 3.007723 ACTTCCTCCGGTCCTTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
155 156 2.977580 ACTTCCTCCGGTCCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
156 157 3.413846 ACTTCCTCCGGTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
157 158 3.903090 TGTACTTCCTCCGGTCCTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
158 159 2.707257 TGTACTTCCTCCGGTCCTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
159 160 2.302157 CTGTACTTCCTCCGGTCCTTTT 59.698 50.000 0.00 0.00 0.00 2.27
160 161 1.900486 CTGTACTTCCTCCGGTCCTTT 59.100 52.381 0.00 0.00 0.00 3.11
161 162 1.076677 TCTGTACTTCCTCCGGTCCTT 59.923 52.381 0.00 0.00 0.00 3.36
162 163 0.702902 TCTGTACTTCCTCCGGTCCT 59.297 55.000 0.00 0.00 0.00 3.85
163 164 1.104630 CTCTGTACTTCCTCCGGTCC 58.895 60.000 0.00 0.00 0.00 4.46
164 165 1.836802 ACTCTGTACTTCCTCCGGTC 58.163 55.000 0.00 0.00 0.00 4.79
165 166 2.040813 TGTACTCTGTACTTCCTCCGGT 59.959 50.000 0.00 0.00 0.00 5.28
166 167 2.719739 TGTACTCTGTACTTCCTCCGG 58.280 52.381 0.00 0.00 0.00 5.14
167 168 3.425892 CGTTGTACTCTGTACTTCCTCCG 60.426 52.174 8.94 0.00 0.00 4.63
168 169 3.505293 ACGTTGTACTCTGTACTTCCTCC 59.495 47.826 8.94 0.00 0.00 4.30
169 170 4.762956 ACGTTGTACTCTGTACTTCCTC 57.237 45.455 8.94 0.00 0.00 3.71
170 171 4.155644 GCTACGTTGTACTCTGTACTTCCT 59.844 45.833 0.00 0.00 0.00 3.36
171 172 4.083110 TGCTACGTTGTACTCTGTACTTCC 60.083 45.833 0.00 0.00 0.00 3.46
172 173 5.039480 TGCTACGTTGTACTCTGTACTTC 57.961 43.478 0.00 2.52 0.00 3.01
173 174 5.640189 ATGCTACGTTGTACTCTGTACTT 57.360 39.130 0.00 0.00 0.00 2.24
174 175 6.149973 TGTTATGCTACGTTGTACTCTGTACT 59.850 38.462 0.00 0.00 0.00 2.73
175 176 6.317088 TGTTATGCTACGTTGTACTCTGTAC 58.683 40.000 0.00 1.33 0.00 2.90
176 177 6.403964 CCTGTTATGCTACGTTGTACTCTGTA 60.404 42.308 0.00 0.00 0.00 2.74
177 178 5.381174 TGTTATGCTACGTTGTACTCTGT 57.619 39.130 0.00 0.00 0.00 3.41
178 179 4.798907 CCTGTTATGCTACGTTGTACTCTG 59.201 45.833 0.00 0.00 0.00 3.35
179 180 4.461781 ACCTGTTATGCTACGTTGTACTCT 59.538 41.667 0.00 0.00 0.00 3.24
186 187 3.118884 CCTACCACCTGTTATGCTACGTT 60.119 47.826 0.00 0.00 0.00 3.99
192 193 2.640184 GGTTCCTACCACCTGTTATGC 58.360 52.381 0.00 0.00 44.36 3.14
397 398 8.996651 ATACAATAAAAGGAGAATACAAGGGG 57.003 34.615 0.00 0.00 0.00 4.79
419 420 3.427503 CGAAGGTGCATGGTGGAAAATAC 60.428 47.826 0.00 0.00 0.00 1.89
450 451 6.911511 TGTAAAAATTGTAGCAACGTGGTAAC 59.088 34.615 0.00 0.00 31.59 2.50
548 635 6.389830 TTTGTACATGGAATATCATGGCAC 57.610 37.500 0.00 6.81 46.33 5.01
607 694 8.469309 ACCTTTTTGTGATATATGATTCCCTG 57.531 34.615 0.00 0.00 0.00 4.45
678 765 4.547532 CACTGGCTAGCCTTAATAGTACG 58.452 47.826 33.07 13.46 36.94 3.67
709 796 2.403252 ATGGCTAGTAAGTGTGGTGC 57.597 50.000 0.00 0.00 0.00 5.01
761 852 7.831691 TGATCCTGGTTAGTTTTGATTGAAA 57.168 32.000 0.00 0.00 0.00 2.69
883 974 2.694760 GGCTGAGGAAAGGCAAGCG 61.695 63.158 0.00 0.00 42.15 4.68
1052 1146 1.134438 GTCACCCACTTCCCCTCCTT 61.134 60.000 0.00 0.00 0.00 3.36
1126 1220 2.034999 GAACCCCGGCATCACCAA 59.965 61.111 0.00 0.00 39.03 3.67
1281 1375 0.868406 GTGTGGCTGTGTGTTCTAGC 59.132 55.000 0.00 0.00 36.74 3.42
1283 1377 1.474320 GGTGTGTGGCTGTGTGTTCTA 60.474 52.381 0.00 0.00 0.00 2.10
1285 1379 1.727467 GGTGTGTGGCTGTGTGTTC 59.273 57.895 0.00 0.00 0.00 3.18
1286 1380 2.112198 CGGTGTGTGGCTGTGTGTT 61.112 57.895 0.00 0.00 0.00 3.32
1292 1386 2.680913 GCTAAGCGGTGTGTGGCTG 61.681 63.158 0.00 0.00 39.93 4.85
1294 1388 2.358737 AGCTAAGCGGTGTGTGGC 60.359 61.111 0.00 0.00 0.00 5.01
1295 1389 0.602638 TTGAGCTAAGCGGTGTGTGG 60.603 55.000 0.00 0.00 0.00 4.17
1298 1392 4.678509 TTAATTTGAGCTAAGCGGTGTG 57.321 40.909 0.00 0.00 0.00 3.82
1646 1876 0.247814 ATTTCGCTTGCTTGATCGCG 60.248 50.000 0.00 0.00 46.28 5.87
1647 1877 1.900237 AATTTCGCTTGCTTGATCGC 58.100 45.000 0.00 0.00 0.00 4.58
1653 1883 4.192317 CCCTAGTCTAATTTCGCTTGCTT 58.808 43.478 0.00 0.00 0.00 3.91
1657 1887 5.414765 CCAAAACCCTAGTCTAATTTCGCTT 59.585 40.000 0.00 0.00 0.00 4.68
1667 1897 5.325239 CTCCAAATTCCAAAACCCTAGTCT 58.675 41.667 0.00 0.00 0.00 3.24
1732 1963 6.146673 GCTTCCCATGATTTCTCAAAACAAAG 59.853 38.462 0.00 0.00 34.37 2.77
1742 1973 5.839517 ATAGCTAGCTTCCCATGATTTCT 57.160 39.130 24.88 0.00 0.00 2.52
1743 1974 7.713073 GGTATATAGCTAGCTTCCCATGATTTC 59.287 40.741 24.88 2.78 0.00 2.17
1746 1977 6.205298 TGGTATATAGCTAGCTTCCCATGAT 58.795 40.000 24.88 10.84 0.00 2.45
1768 1999 3.672293 AGCATGAACAACGGCTGG 58.328 55.556 0.00 0.00 34.83 4.85
1987 2218 2.505407 ACATGCAAGTGGTATCTAGCCA 59.495 45.455 0.00 0.00 0.00 4.75
1988 2219 3.134458 GACATGCAAGTGGTATCTAGCC 58.866 50.000 0.00 0.00 0.00 3.93
2025 2256 6.588719 AGCTTGGACATGCAAATAGTTAAA 57.411 33.333 11.93 0.00 34.33 1.52
2216 2447 3.623960 TGAAAACAAACACCCTCTACGTG 59.376 43.478 0.00 0.00 37.26 4.49
2217 2448 3.876341 TGAAAACAAACACCCTCTACGT 58.124 40.909 0.00 0.00 0.00 3.57
2218 2449 4.320202 CCATGAAAACAAACACCCTCTACG 60.320 45.833 0.00 0.00 0.00 3.51
2219 2450 4.825085 TCCATGAAAACAAACACCCTCTAC 59.175 41.667 0.00 0.00 0.00 2.59
2220 2451 4.825085 GTCCATGAAAACAAACACCCTCTA 59.175 41.667 0.00 0.00 0.00 2.43
2221 2452 3.636764 GTCCATGAAAACAAACACCCTCT 59.363 43.478 0.00 0.00 0.00 3.69
2222 2453 3.636764 AGTCCATGAAAACAAACACCCTC 59.363 43.478 0.00 0.00 0.00 4.30
2223 2454 3.642141 AGTCCATGAAAACAAACACCCT 58.358 40.909 0.00 0.00 0.00 4.34
2224 2455 4.400529 AAGTCCATGAAAACAAACACCC 57.599 40.909 0.00 0.00 0.00 4.61
2225 2456 6.423604 CCAATAAGTCCATGAAAACAAACACC 59.576 38.462 0.00 0.00 0.00 4.16
2226 2457 6.983890 ACCAATAAGTCCATGAAAACAAACAC 59.016 34.615 0.00 0.00 0.00 3.32
2227 2458 7.069331 AGACCAATAAGTCCATGAAAACAAACA 59.931 33.333 0.00 0.00 37.49 2.83
2228 2459 7.433680 AGACCAATAAGTCCATGAAAACAAAC 58.566 34.615 0.00 0.00 37.49 2.93
2229 2460 7.595819 AGACCAATAAGTCCATGAAAACAAA 57.404 32.000 0.00 0.00 37.49 2.83
2230 2461 7.393234 CCTAGACCAATAAGTCCATGAAAACAA 59.607 37.037 0.00 0.00 37.49 2.83
2231 2462 6.884295 CCTAGACCAATAAGTCCATGAAAACA 59.116 38.462 0.00 0.00 37.49 2.83
2232 2463 6.318900 CCCTAGACCAATAAGTCCATGAAAAC 59.681 42.308 0.00 0.00 37.49 2.43
2233 2464 6.216662 TCCCTAGACCAATAAGTCCATGAAAA 59.783 38.462 0.00 0.00 37.49 2.29
2234 2465 5.729229 TCCCTAGACCAATAAGTCCATGAAA 59.271 40.000 0.00 0.00 37.49 2.69
2235 2466 5.130477 GTCCCTAGACCAATAAGTCCATGAA 59.870 44.000 0.00 0.00 37.49 2.57
2236 2467 4.654262 GTCCCTAGACCAATAAGTCCATGA 59.346 45.833 0.00 0.00 37.49 3.07
2237 2468 4.656112 AGTCCCTAGACCAATAAGTCCATG 59.344 45.833 0.00 0.00 44.72 3.66
2238 2469 4.897051 AGTCCCTAGACCAATAAGTCCAT 58.103 43.478 0.00 0.00 44.72 3.41
2239 2470 4.348020 AGTCCCTAGACCAATAAGTCCA 57.652 45.455 0.00 0.00 44.72 4.02
2240 2471 6.803366 TTAAGTCCCTAGACCAATAAGTCC 57.197 41.667 0.00 0.00 44.72 3.85
2266 2497 9.702253 TGGTTTAGATGAGACTTATAGAGACTT 57.298 33.333 0.00 0.00 30.39 3.01
2267 2498 9.702253 TTGGTTTAGATGAGACTTATAGAGACT 57.298 33.333 0.00 0.00 32.98 3.24
2272 2503 9.319143 CCTGTTTGGTTTAGATGAGACTTATAG 57.681 37.037 0.00 0.00 0.00 1.31
2273 2504 9.042450 TCCTGTTTGGTTTAGATGAGACTTATA 57.958 33.333 0.00 0.00 37.07 0.98
2274 2505 7.918076 TCCTGTTTGGTTTAGATGAGACTTAT 58.082 34.615 0.00 0.00 37.07 1.73
2275 2506 7.311092 TCCTGTTTGGTTTAGATGAGACTTA 57.689 36.000 0.00 0.00 37.07 2.24
2276 2507 6.187727 TCCTGTTTGGTTTAGATGAGACTT 57.812 37.500 0.00 0.00 37.07 3.01
2277 2508 5.280215 CCTCCTGTTTGGTTTAGATGAGACT 60.280 44.000 0.00 0.00 37.07 3.24
2278 2509 4.938226 CCTCCTGTTTGGTTTAGATGAGAC 59.062 45.833 0.00 0.00 37.07 3.36
2279 2510 4.019321 CCCTCCTGTTTGGTTTAGATGAGA 60.019 45.833 0.00 0.00 37.07 3.27
2280 2511 4.019321 TCCCTCCTGTTTGGTTTAGATGAG 60.019 45.833 0.00 0.00 37.07 2.90
2281 2512 3.913799 TCCCTCCTGTTTGGTTTAGATGA 59.086 43.478 0.00 0.00 37.07 2.92
2282 2513 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
2283 2514 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
2284 2515 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
2285 2516 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
2286 2517 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
2287 2518 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
2288 2519 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
2289 2520 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
2290 2521 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
2291 2522 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
2292 2523 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
2293 2524 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
2294 2525 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
2295 2526 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
2296 2527 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
2297 2528 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
2298 2529 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
2299 2530 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
2300 2531 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
2301 2532 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
2302 2533 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
2303 2534 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
2304 2535 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
2305 2536 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
2306 2537 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
2307 2538 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
2308 2539 4.340617 CAAATGCCCACTTTAAGTCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
2309 2540 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
2310 2541 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
2311 2542 2.233676 CCCAAATGCCCACTTTAAGTCC 59.766 50.000 0.00 0.00 0.00 3.85
2312 2543 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
2313 2544 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
2314 2545 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
2315 2546 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
2316 2547 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
2317 2548 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
2318 2549 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
2319 2550 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
2320 2551 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
2321 2552 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
2322 2553 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
2323 2554 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
2324 2555 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
2325 2556 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
2326 2557 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
2327 2558 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
2328 2559 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
2329 2560 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
2330 2561 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
2331 2562 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
2332 2563 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
2333 2564 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
2334 2565 7.930865 CCCTCCTTGAGAGTCTTATTTCATAAG 59.069 40.741 0.00 0.00 41.47 1.73
2335 2566 7.623677 TCCCTCCTTGAGAGTCTTATTTCATAA 59.376 37.037 0.00 0.00 41.47 1.90
2336 2567 7.070074 GTCCCTCCTTGAGAGTCTTATTTCATA 59.930 40.741 0.00 0.00 41.47 2.15
2337 2568 5.966935 TCCCTCCTTGAGAGTCTTATTTCAT 59.033 40.000 0.00 0.00 41.47 2.57
2338 2569 5.187967 GTCCCTCCTTGAGAGTCTTATTTCA 59.812 44.000 0.00 0.00 41.47 2.69
2339 2570 5.423931 AGTCCCTCCTTGAGAGTCTTATTTC 59.576 44.000 0.00 0.00 41.47 2.17
2340 2571 5.346270 AGTCCCTCCTTGAGAGTCTTATTT 58.654 41.667 0.00 0.00 41.47 1.40
2341 2572 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
2342 2573 4.618378 AGTCCCTCCTTGAGAGTCTTAT 57.382 45.455 0.00 0.00 41.47 1.73
2343 2574 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
2344 2575 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
2345 2576 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
2346 2577 4.830600 CCTATAAGTCCCTCCTTGAGAGTC 59.169 50.000 0.00 0.00 41.47 3.36
2347 2578 4.388118 CCCTATAAGTCCCTCCTTGAGAGT 60.388 50.000 0.00 0.00 41.47 3.24
2348 2579 4.140900 TCCCTATAAGTCCCTCCTTGAGAG 60.141 50.000 0.00 0.00 42.83 3.20
2349 2580 3.797845 TCCCTATAAGTCCCTCCTTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
2350 2581 3.898741 GTCCCTATAAGTCCCTCCTTGAG 59.101 52.174 0.00 0.00 0.00 3.02
2351 2582 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
2352 2583 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
2353 2584 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
2354 2585 5.970692 ATAAGTCCCTATAAGTCCCTCCT 57.029 43.478 0.00 0.00 0.00 3.69
2355 2586 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
2356 2587 9.994017 ATAACTATAAGTCCCTATAAGTCCCTC 57.006 37.037 0.00 0.00 0.00 4.30
2393 2624 9.240734 GGTTCCTCGGATTTATAAGTCTCTATA 57.759 37.037 7.79 0.00 0.00 1.31
2394 2625 7.728981 TGGTTCCTCGGATTTATAAGTCTCTAT 59.271 37.037 7.79 0.00 0.00 1.98
2395 2626 7.064866 TGGTTCCTCGGATTTATAAGTCTCTA 58.935 38.462 7.79 0.00 0.00 2.43
2396 2627 5.897824 TGGTTCCTCGGATTTATAAGTCTCT 59.102 40.000 7.79 0.00 0.00 3.10
2397 2628 6.158023 TGGTTCCTCGGATTTATAAGTCTC 57.842 41.667 7.79 0.00 0.00 3.36
2398 2629 6.555463 TTGGTTCCTCGGATTTATAAGTCT 57.445 37.500 7.79 0.00 0.00 3.24
2399 2630 6.596497 TGTTTGGTTCCTCGGATTTATAAGTC 59.404 38.462 0.00 0.00 0.00 3.01
2400 2631 6.478129 TGTTTGGTTCCTCGGATTTATAAGT 58.522 36.000 0.00 0.00 0.00 2.24
2401 2632 6.038271 CCTGTTTGGTTCCTCGGATTTATAAG 59.962 42.308 0.00 0.00 0.00 1.73
2402 2633 5.883673 CCTGTTTGGTTCCTCGGATTTATAA 59.116 40.000 0.00 0.00 0.00 0.98
2403 2634 5.433526 CCTGTTTGGTTCCTCGGATTTATA 58.566 41.667 0.00 0.00 0.00 0.98
2404 2635 4.270008 CCTGTTTGGTTCCTCGGATTTAT 58.730 43.478 0.00 0.00 0.00 1.40
2405 2636 3.681593 CCTGTTTGGTTCCTCGGATTTA 58.318 45.455 0.00 0.00 0.00 1.40
2406 2637 2.514803 CCTGTTTGGTTCCTCGGATTT 58.485 47.619 0.00 0.00 0.00 2.17
2407 2638 2.200373 CCTGTTTGGTTCCTCGGATT 57.800 50.000 0.00 0.00 0.00 3.01
2408 2639 3.957288 CCTGTTTGGTTCCTCGGAT 57.043 52.632 0.00 0.00 0.00 4.18
2418 2649 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
2419 2650 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
2420 2651 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
2421 2652 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
2422 2653 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
2423 2654 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
2424 2655 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
2425 2656 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
2426 2657 4.287845 TCCAAGTCCCTAAAAAGTCCCTAC 59.712 45.833 0.00 0.00 0.00 3.18
2427 2658 4.505367 TCCAAGTCCCTAAAAAGTCCCTA 58.495 43.478 0.00 0.00 0.00 3.53
2428 2659 3.332968 TCCAAGTCCCTAAAAAGTCCCT 58.667 45.455 0.00 0.00 0.00 4.20
2429 2660 3.801307 TCCAAGTCCCTAAAAAGTCCC 57.199 47.619 0.00 0.00 0.00 4.46
2430 2661 4.726583 AGTTCCAAGTCCCTAAAAAGTCC 58.273 43.478 0.00 0.00 0.00 3.85
2431 2662 7.997773 ATAAGTTCCAAGTCCCTAAAAAGTC 57.002 36.000 0.00 0.00 0.00 3.01
2432 2663 9.462606 CATATAAGTTCCAAGTCCCTAAAAAGT 57.537 33.333 0.00 0.00 0.00 2.66
2433 2664 9.462606 ACATATAAGTTCCAAGTCCCTAAAAAG 57.537 33.333 0.00 0.00 0.00 2.27
2434 2665 9.816787 AACATATAAGTTCCAAGTCCCTAAAAA 57.183 29.630 0.00 0.00 0.00 1.94
2437 2668 8.711170 CCTAACATATAAGTTCCAAGTCCCTAA 58.289 37.037 0.00 0.00 33.07 2.69
2438 2669 8.069356 TCCTAACATATAAGTTCCAAGTCCCTA 58.931 37.037 0.00 0.00 33.07 3.53
2439 2670 6.906901 TCCTAACATATAAGTTCCAAGTCCCT 59.093 38.462 0.00 0.00 33.07 4.20
2440 2671 6.990939 GTCCTAACATATAAGTTCCAAGTCCC 59.009 42.308 0.00 0.00 33.07 4.46
2441 2672 7.793036 AGTCCTAACATATAAGTTCCAAGTCC 58.207 38.462 0.00 0.00 33.07 3.85
2474 2705 6.316390 CCTGTTTGGTTCATAAGTCCTATGAC 59.684 42.308 0.00 0.00 44.98 3.06
2475 2706 6.414732 CCTGTTTGGTTCATAAGTCCTATGA 58.585 40.000 0.00 0.00 43.88 2.15
2476 2707 5.590259 CCCTGTTTGGTTCATAAGTCCTATG 59.410 44.000 0.00 0.00 39.11 2.23
2477 2708 5.755849 CCCTGTTTGGTTCATAAGTCCTAT 58.244 41.667 0.00 0.00 0.00 2.57
2478 2709 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
2479 2710 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
2480 2711 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
2481 2712 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
2482 2713 2.525368 GGCCCTGTTTGGTTCATAAGT 58.475 47.619 0.00 0.00 0.00 2.24
2483 2714 1.472480 CGGCCCTGTTTGGTTCATAAG 59.528 52.381 0.00 0.00 0.00 1.73
2484 2715 1.202952 ACGGCCCTGTTTGGTTCATAA 60.203 47.619 0.00 0.00 0.00 1.90
2485 2716 0.402504 ACGGCCCTGTTTGGTTCATA 59.597 50.000 0.00 0.00 0.00 2.15
2486 2717 0.402504 TACGGCCCTGTTTGGTTCAT 59.597 50.000 0.00 0.00 0.00 2.57
2487 2718 0.535553 GTACGGCCCTGTTTGGTTCA 60.536 55.000 0.00 0.00 0.00 3.18
2488 2719 0.250597 AGTACGGCCCTGTTTGGTTC 60.251 55.000 0.00 0.00 0.00 3.62
2489 2720 0.250597 GAGTACGGCCCTGTTTGGTT 60.251 55.000 0.00 0.00 0.00 3.67
2490 2721 1.373812 GAGTACGGCCCTGTTTGGT 59.626 57.895 0.00 0.00 0.00 3.67
2491 2722 1.740296 CGAGTACGGCCCTGTTTGG 60.740 63.158 0.00 0.00 35.72 3.28
2492 2723 1.005394 ACGAGTACGGCCCTGTTTG 60.005 57.895 0.00 0.00 44.46 2.93
2493 2724 1.005394 CACGAGTACGGCCCTGTTT 60.005 57.895 0.00 0.00 44.46 2.83
2494 2725 0.895100 TACACGAGTACGGCCCTGTT 60.895 55.000 0.00 0.00 44.46 3.16
2495 2726 0.895100 TTACACGAGTACGGCCCTGT 60.895 55.000 0.00 0.00 44.46 4.00
2496 2727 0.179145 CTTACACGAGTACGGCCCTG 60.179 60.000 0.00 0.00 44.46 4.45
2497 2728 0.322816 TCTTACACGAGTACGGCCCT 60.323 55.000 0.00 0.00 44.46 5.19
2498 2729 0.743097 ATCTTACACGAGTACGGCCC 59.257 55.000 0.00 0.00 44.46 5.80
2499 2730 1.674962 AGATCTTACACGAGTACGGCC 59.325 52.381 0.00 0.00 44.46 6.13
2500 2731 3.417690 AAGATCTTACACGAGTACGGC 57.582 47.619 6.06 0.00 44.46 5.68
2501 2732 4.103357 CCAAAGATCTTACACGAGTACGG 58.897 47.826 8.75 0.00 44.46 4.02
2529 2760 7.012044 ACACGTCAAAGCTAAAGAAATTACTGT 59.988 33.333 0.00 0.00 0.00 3.55
2552 2783 5.122396 AGGAATTCAGAATTTACTGCGACAC 59.878 40.000 9.84 0.00 37.75 3.67
2567 2798 6.789262 AGCACGATCAAATTAAGGAATTCAG 58.211 36.000 7.93 0.00 34.01 3.02
2626 2892 0.249955 TCTCGGACTGCATGCATGAA 59.750 50.000 30.64 19.89 0.00 2.57
2779 3048 1.138883 CGTGGACGACGGTGATGAT 59.861 57.895 1.57 0.00 44.85 2.45
2801 3070 3.108289 CTGCTGCGTCGGTGACAG 61.108 66.667 0.00 0.00 32.09 3.51
3233 3502 2.351244 CGTAGTCCCTGCTGCCTGA 61.351 63.158 0.00 0.00 0.00 3.86
3339 3611 4.334203 TGCGAAAACCTACGAATTATGCAT 59.666 37.500 3.79 3.79 0.00 3.96
3340 3612 3.685272 TGCGAAAACCTACGAATTATGCA 59.315 39.130 0.00 0.00 0.00 3.96
3360 3632 0.320421 TCAGAGTTAACCGTGGCTGC 60.320 55.000 0.88 0.00 0.00 5.25
3408 3680 1.202806 TGCTGAAGAGTGGTGAAAGGG 60.203 52.381 0.00 0.00 0.00 3.95
3422 3694 8.650490 TCTGAATCATATATACCACTTGCTGAA 58.350 33.333 0.00 0.00 0.00 3.02
3423 3695 8.193953 TCTGAATCATATATACCACTTGCTGA 57.806 34.615 0.00 0.00 0.00 4.26
3493 3767 4.380841 ACGTTTAGACTGACTGAACACA 57.619 40.909 13.20 0.00 42.68 3.72
3512 3786 6.366332 AGTTAACTAAGACATGAAGCTGAACG 59.634 38.462 6.26 0.00 0.00 3.95
3542 3816 2.030457 GCTGTTAAACACATCGATCCGG 59.970 50.000 0.00 0.00 33.76 5.14
3543 3817 2.670905 TGCTGTTAAACACATCGATCCG 59.329 45.455 0.00 0.00 33.76 4.18
3544 3818 4.678509 TTGCTGTTAAACACATCGATCC 57.321 40.909 0.00 0.00 33.76 3.36
3545 3819 6.314018 TCATTTGCTGTTAAACACATCGATC 58.686 36.000 0.00 0.00 33.76 3.69
3546 3820 6.252967 TCATTTGCTGTTAAACACATCGAT 57.747 33.333 0.00 0.00 33.76 3.59
3547 3821 5.334802 CCTCATTTGCTGTTAAACACATCGA 60.335 40.000 0.00 0.00 33.76 3.59
3548 3822 4.853196 CCTCATTTGCTGTTAAACACATCG 59.147 41.667 0.00 0.00 33.76 3.84
3549 3823 5.772521 ACCTCATTTGCTGTTAAACACATC 58.227 37.500 0.00 0.00 33.76 3.06
3550 3824 5.789643 ACCTCATTTGCTGTTAAACACAT 57.210 34.783 0.00 0.00 33.76 3.21
3551 3825 5.590530 AACCTCATTTGCTGTTAAACACA 57.409 34.783 0.00 0.00 0.00 3.72
3552 3826 6.735130 ACTAACCTCATTTGCTGTTAAACAC 58.265 36.000 0.00 0.00 0.00 3.32
3553 3827 6.952773 ACTAACCTCATTTGCTGTTAAACA 57.047 33.333 0.00 0.00 0.00 2.83
3554 3828 9.177304 GTAAACTAACCTCATTTGCTGTTAAAC 57.823 33.333 0.00 0.00 0.00 2.01
3555 3829 8.904834 TGTAAACTAACCTCATTTGCTGTTAAA 58.095 29.630 0.00 0.00 0.00 1.52
3556 3830 8.347035 GTGTAAACTAACCTCATTTGCTGTTAA 58.653 33.333 0.00 0.00 0.00 2.01
3557 3831 7.717875 AGTGTAAACTAACCTCATTTGCTGTTA 59.282 33.333 0.00 0.00 0.00 2.41
3558 3832 6.546034 AGTGTAAACTAACCTCATTTGCTGTT 59.454 34.615 0.00 0.00 0.00 3.16
3559 3833 6.017109 CAGTGTAAACTAACCTCATTTGCTGT 60.017 38.462 0.00 0.00 0.00 4.40
3560 3834 6.017109 ACAGTGTAAACTAACCTCATTTGCTG 60.017 38.462 0.00 0.00 0.00 4.41
3572 3846 7.717436 TGATCACCATTCAACAGTGTAAACTAA 59.283 33.333 0.00 0.00 33.21 2.24
3616 5355 0.881796 GTAGAAACAACTGCCTGCCC 59.118 55.000 0.00 0.00 0.00 5.36
3650 5389 2.951457 TCATGTGCCATGCAGAATTG 57.049 45.000 9.54 0.00 40.08 2.32
3651 5390 3.965379 TTTCATGTGCCATGCAGAATT 57.035 38.095 9.54 0.00 40.08 2.17
3652 5391 5.601583 TTATTTCATGTGCCATGCAGAAT 57.398 34.783 9.54 10.85 40.08 2.40
3653 5392 5.105269 ACATTATTTCATGTGCCATGCAGAA 60.105 36.000 9.54 5.92 40.08 3.02
3910 5667 1.653667 CACATGCACTTCCGCACAA 59.346 52.632 0.00 0.00 46.56 3.33
3916 5673 4.120331 GCCGGCACATGCACTTCC 62.120 66.667 24.80 0.00 44.36 3.46
4127 5886 6.778559 GGGGCCATACAACCTAAATTAATGTA 59.221 38.462 4.39 0.00 0.00 2.29
4128 5887 5.600898 GGGGCCATACAACCTAAATTAATGT 59.399 40.000 4.39 0.00 0.00 2.71
4132 5891 3.822940 CGGGGCCATACAACCTAAATTA 58.177 45.455 4.39 0.00 0.00 1.40
4160 5919 4.570663 CTAGGAGCGGGGCGTTCG 62.571 72.222 0.00 0.00 37.94 3.95
4161 5920 4.222847 CCTAGGAGCGGGGCGTTC 62.223 72.222 1.05 0.00 36.42 3.95
4165 5924 3.862991 GAACCCTAGGAGCGGGGC 61.863 72.222 11.48 0.00 46.40 5.80
4166 5925 3.162154 GGAACCCTAGGAGCGGGG 61.162 72.222 11.48 0.00 46.40 5.73



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.