Multiple sequence alignment - TraesCS1A01G261700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G261700 chr1A 100.000 2988 0 0 516 3503 456242887 456245874 0.000000e+00 5518
1 TraesCS1A01G261700 chr1A 100.000 248 0 0 1 248 456242372 456242619 3.190000e-125 459
2 TraesCS1A01G261700 chr1A 97.386 153 4 0 3351 3503 85071247 85071095 9.640000e-66 261
3 TraesCS1A01G261700 chr1D 92.801 2403 117 21 534 2894 355667900 355670288 0.000000e+00 3428
4 TraesCS1A01G261700 chr1D 88.987 227 21 4 2 227 355667667 355667890 9.580000e-71 278
5 TraesCS1A01G261700 chr1D 92.632 95 4 2 3262 3353 14667665 14667571 2.190000e-27 134
6 TraesCS1A01G261700 chr1B 90.598 2340 152 34 862 3152 478560499 478562819 0.000000e+00 3040
7 TraesCS1A01G261700 chr1B 89.552 268 18 4 601 865 478557747 478558007 7.250000e-87 331
8 TraesCS1A01G261700 chr1B 86.592 179 21 3 2 178 478557270 478557447 9.920000e-46 195
9 TraesCS1A01G261700 chr2B 87.124 1530 177 8 973 2502 682258491 682260000 0.000000e+00 1716
10 TraesCS1A01G261700 chr2B 93.684 95 4 1 3261 3353 381292069 381292163 1.310000e-29 141
11 TraesCS1A01G261700 chr2B 93.617 94 4 1 3262 3353 719559990 719560083 4.710000e-29 139
12 TraesCS1A01G261700 chr2A 87.142 1501 173 8 1003 2502 709173376 709174857 0.000000e+00 1685
13 TraesCS1A01G261700 chr2A 91.489 94 6 1 3262 3353 655896497 655896404 1.020000e-25 128
14 TraesCS1A01G261700 chr5D 85.383 1464 193 11 1037 2497 493912454 493913899 0.000000e+00 1498
15 TraesCS1A01G261700 chr5D 84.559 1496 182 34 999 2472 542106114 542107582 0.000000e+00 1437
16 TraesCS1A01G261700 chr5D 90.625 96 6 2 3261 3353 467605896 467605801 1.320000e-24 124
17 TraesCS1A01G261700 chr5B 85.391 1458 190 11 1044 2497 610282406 610280968 0.000000e+00 1491
18 TraesCS1A01G261700 chr5B 85.042 1444 191 12 1044 2482 610107918 610106495 0.000000e+00 1447
19 TraesCS1A01G261700 chr5A 85.027 1456 193 13 1047 2497 617097304 617095869 0.000000e+00 1458
20 TraesCS1A01G261700 chr5A 84.384 1460 201 14 1044 2497 617123661 617122223 0.000000e+00 1408
21 TraesCS1A01G261700 chr5A 96.815 157 5 0 3347 3503 119887525 119887681 2.680000e-66 263
22 TraesCS1A01G261700 chr5A 95.570 158 7 0 3346 3503 310771615 310771458 1.610000e-63 254
23 TraesCS1A01G261700 chr4A 84.316 1492 184 31 1005 2472 626954615 626953150 0.000000e+00 1413
24 TraesCS1A01G261700 chr4A 84.584 1466 172 30 1041 2482 713606000 713604565 0.000000e+00 1406
25 TraesCS1A01G261700 chr7D 84.759 1450 176 22 1041 2481 19399648 19401061 0.000000e+00 1411
26 TraesCS1A01G261700 chr7D 92.553 94 5 1 3262 3353 8593234 8593327 2.190000e-27 134
27 TraesCS1A01G261700 chr2D 75.455 1483 279 64 1039 2477 9873320 9874761 0.000000e+00 643
28 TraesCS1A01G261700 chr2D 92.553 94 5 1 3262 3353 538941128 538941035 2.190000e-27 134
29 TraesCS1A01G261700 chr7A 98.013 151 3 0 3353 3503 563198508 563198658 2.680000e-66 263
30 TraesCS1A01G261700 chr7A 96.795 156 5 0 3348 3503 130777487 130777642 9.640000e-66 261
31 TraesCS1A01G261700 chr7A 97.368 152 4 0 3352 3503 688768684 688768533 3.470000e-65 259
32 TraesCS1A01G261700 chr6A 96.250 160 6 0 3344 3503 151619281 151619122 2.680000e-66 263
33 TraesCS1A01G261700 chr6A 96.774 155 5 0 3349 3503 16015080 16014926 3.470000e-65 259
34 TraesCS1A01G261700 chr3A 95.625 160 6 1 3344 3503 609630920 609630762 4.490000e-64 255
35 TraesCS1A01G261700 chr3D 92.632 95 4 2 3262 3353 527520543 527520449 2.190000e-27 134
36 TraesCS1A01G261700 chr3B 91.489 94 6 1 3262 3353 327016351 327016258 1.020000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G261700 chr1A 456242372 456245874 3502 False 2988.500000 5518 100.000 1 3503 2 chr1A.!!$F1 3502
1 TraesCS1A01G261700 chr1D 355667667 355670288 2621 False 1853.000000 3428 90.894 2 2894 2 chr1D.!!$F1 2892
2 TraesCS1A01G261700 chr1B 478557270 478562819 5549 False 1188.666667 3040 88.914 2 3152 3 chr1B.!!$F1 3150
3 TraesCS1A01G261700 chr2B 682258491 682260000 1509 False 1716.000000 1716 87.124 973 2502 1 chr2B.!!$F2 1529
4 TraesCS1A01G261700 chr2A 709173376 709174857 1481 False 1685.000000 1685 87.142 1003 2502 1 chr2A.!!$F1 1499
5 TraesCS1A01G261700 chr5D 493912454 493913899 1445 False 1498.000000 1498 85.383 1037 2497 1 chr5D.!!$F1 1460
6 TraesCS1A01G261700 chr5D 542106114 542107582 1468 False 1437.000000 1437 84.559 999 2472 1 chr5D.!!$F2 1473
7 TraesCS1A01G261700 chr5B 610280968 610282406 1438 True 1491.000000 1491 85.391 1044 2497 1 chr5B.!!$R2 1453
8 TraesCS1A01G261700 chr5B 610106495 610107918 1423 True 1447.000000 1447 85.042 1044 2482 1 chr5B.!!$R1 1438
9 TraesCS1A01G261700 chr5A 617095869 617097304 1435 True 1458.000000 1458 85.027 1047 2497 1 chr5A.!!$R2 1450
10 TraesCS1A01G261700 chr5A 617122223 617123661 1438 True 1408.000000 1408 84.384 1044 2497 1 chr5A.!!$R3 1453
11 TraesCS1A01G261700 chr4A 626953150 626954615 1465 True 1413.000000 1413 84.316 1005 2472 1 chr4A.!!$R1 1467
12 TraesCS1A01G261700 chr4A 713604565 713606000 1435 True 1406.000000 1406 84.584 1041 2482 1 chr4A.!!$R2 1441
13 TraesCS1A01G261700 chr7D 19399648 19401061 1413 False 1411.000000 1411 84.759 1041 2481 1 chr7D.!!$F2 1440
14 TraesCS1A01G261700 chr2D 9873320 9874761 1441 False 643.000000 643 75.455 1039 2477 1 chr2D.!!$F1 1438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 548 0.032217 AATTGGGGAATGCGGATGGT 60.032 50.0 0.00 0.00 0.00 3.55 F
824 963 0.318107 CGGCACTTCCAAGCAACTTG 60.318 55.0 0.24 0.24 40.75 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1465 4125 1.097547 GCGAACATGCTGCTACCCAT 61.098 55.000 0.0 0.0 0.0 4.00 R
2655 5398 1.067283 ACAAGTCTGTGAGATGCCGAG 60.067 52.381 0.0 0.0 33.3 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.071019 CGCATGTCGCAGTAGAACGT 61.071 55.000 0.00 0.00 42.60 3.99
25 26 2.256174 GCATGTCGCAGTAGAACGTAA 58.744 47.619 0.00 0.00 41.79 3.18
31 32 1.200716 CGCAGTAGAACGTAACCTGGA 59.799 52.381 0.00 0.00 0.00 3.86
77 78 2.841442 GCTAGGGTTAGCCATCGAAT 57.159 50.000 2.44 0.00 45.34 3.34
90 92 4.214971 AGCCATCGAATGCTTCATTGATAC 59.785 41.667 6.25 0.00 33.90 2.24
117 119 5.360714 GGATCATCCTCATCTATCTCCAGAC 59.639 48.000 0.00 0.00 32.53 3.51
148 150 7.450124 AGTCTTCGTCATTGAGTTCTAACTA 57.550 36.000 0.00 0.00 39.88 2.24
160 162 9.930693 ATTGAGTTCTAACTACTCGAAGAAATT 57.069 29.630 0.00 0.00 43.90 1.82
164 166 8.578151 AGTTCTAACTACTCGAAGAAATTGACT 58.422 33.333 0.00 0.00 37.52 3.41
178 180 7.602517 AGAAATTGACTAGATCGGTTTTGAG 57.397 36.000 0.00 0.00 0.00 3.02
179 181 5.803020 AATTGACTAGATCGGTTTTGAGC 57.197 39.130 0.00 0.00 0.00 4.26
181 183 2.194271 GACTAGATCGGTTTTGAGCGG 58.806 52.381 0.00 0.00 0.00 5.52
182 184 0.931005 CTAGATCGGTTTTGAGCGGC 59.069 55.000 0.00 0.00 0.00 6.53
184 186 3.095898 GATCGGTTTTGAGCGGCGG 62.096 63.158 9.78 0.00 0.00 6.13
218 220 0.533755 GTCTCCGATTGGGCATGAGG 60.534 60.000 0.00 0.00 35.24 3.86
238 240 1.079819 ACGGTCGCCATCTGTCTTG 60.080 57.895 0.00 0.00 0.00 3.02
245 247 0.842635 GCCATCTGTCTTGGGAGGAT 59.157 55.000 0.00 0.00 34.66 3.24
536 538 3.133665 AGAGATGGGATGAATTGGGGAA 58.866 45.455 0.00 0.00 0.00 3.97
539 541 1.792115 TGGGATGAATTGGGGAATGC 58.208 50.000 0.00 0.00 0.00 3.56
546 548 0.032217 AATTGGGGAATGCGGATGGT 60.032 50.000 0.00 0.00 0.00 3.55
571 573 4.301027 CTCGCTGGCGGGGTATCC 62.301 72.222 14.94 0.00 40.25 2.59
615 751 1.684983 CGCGGGAGTAAGGGAATCTTA 59.315 52.381 0.00 0.00 36.93 2.10
659 795 6.316390 AGTGACTTTTTCTTTCAACGAGACAT 59.684 34.615 0.00 0.00 0.00 3.06
701 837 9.989869 GTCATGATATTATCTGAATGATTGCAG 57.010 33.333 0.00 0.00 36.65 4.41
710 849 9.617523 TTATCTGAATGATTGCAGACTGAATAA 57.382 29.630 6.65 0.00 43.26 1.40
779 918 5.743026 TTTGTTTGAACTCTCGCATGTAA 57.257 34.783 0.00 0.00 0.00 2.41
780 919 5.940192 TTGTTTGAACTCTCGCATGTAAT 57.060 34.783 0.00 0.00 0.00 1.89
781 920 7.428282 TTTGTTTGAACTCTCGCATGTAATA 57.572 32.000 0.00 0.00 0.00 0.98
790 929 2.198406 TCGCATGTAATACGTGAAGGC 58.802 47.619 16.12 0.16 37.29 4.35
823 962 0.751643 ACGGCACTTCCAAGCAACTT 60.752 50.000 0.00 0.00 34.01 2.66
824 963 0.318107 CGGCACTTCCAAGCAACTTG 60.318 55.000 0.24 0.24 40.75 3.16
840 979 5.059833 GCAACTTGGATGGATTCTAGTAGG 58.940 45.833 0.00 0.00 0.00 3.18
911 3545 4.935808 TCTCTTCTTAATTGCTCCGAAACC 59.064 41.667 0.00 0.00 0.00 3.27
956 3593 4.026744 CCTAGGTCCATCTCTCAAACTCA 58.973 47.826 0.00 0.00 0.00 3.41
957 3594 4.653341 CCTAGGTCCATCTCTCAAACTCAT 59.347 45.833 0.00 0.00 0.00 2.90
958 3595 4.751767 AGGTCCATCTCTCAAACTCATC 57.248 45.455 0.00 0.00 0.00 2.92
970 3607 7.937394 TCTCTCAAACTCATCATATCCGTACTA 59.063 37.037 0.00 0.00 0.00 1.82
971 3608 8.100508 TCTCAAACTCATCATATCCGTACTAG 57.899 38.462 0.00 0.00 0.00 2.57
1001 3643 4.673441 GCAGTATACTTCTGTCGTCACAT 58.327 43.478 1.56 0.00 35.60 3.21
1416 4076 1.066430 GTGTCCGACAGCTTATTCCCA 60.066 52.381 0.08 0.00 0.00 4.37
1524 4184 2.899044 GCTGCGCAACAACCCGTTA 61.899 57.895 13.05 0.00 35.52 3.18
1656 4322 2.920912 TGGGCGTTCTTCGAGGGT 60.921 61.111 0.00 0.00 42.86 4.34
2489 5206 2.115291 GCCGGAGTTCCATGAAGGC 61.115 63.158 5.05 0.00 37.29 4.35
2502 5219 3.881688 CCATGAAGGCTGGAGAAATGTAG 59.118 47.826 0.00 0.00 35.70 2.74
2505 5222 4.836825 TGAAGGCTGGAGAAATGTAGAAG 58.163 43.478 0.00 0.00 0.00 2.85
2506 5223 4.287067 TGAAGGCTGGAGAAATGTAGAAGT 59.713 41.667 0.00 0.00 0.00 3.01
2507 5224 4.917906 AGGCTGGAGAAATGTAGAAGTT 57.082 40.909 0.00 0.00 0.00 2.66
2508 5225 4.837972 AGGCTGGAGAAATGTAGAAGTTC 58.162 43.478 0.00 0.00 32.95 3.01
2565 5290 2.426522 TGTCATGCCAAGTCAAGCTAC 58.573 47.619 0.00 0.00 0.00 3.58
2586 5311 1.754803 AGCATGGCTCCAAACATGATG 59.245 47.619 0.00 0.00 45.55 3.07
2694 5443 8.451748 AGACTTGTGACACTTAAAAACTTCTTC 58.548 33.333 7.20 0.00 0.00 2.87
2757 5512 9.614792 AGTAATGAAACTCTACACTTTGTTTCT 57.385 29.630 15.31 3.04 44.76 2.52
2801 5556 7.531280 ACTTTTGATCATGTGAATCTACTCG 57.469 36.000 0.00 0.00 0.00 4.18
2831 5596 9.346005 CCTTGCTATTCATGCATATATATGGAA 57.654 33.333 19.30 15.41 40.34 3.53
2852 5617 6.320926 TGGAACATGTGTTTCTCAAATCTTCA 59.679 34.615 0.00 0.00 38.56 3.02
2853 5618 7.014518 TGGAACATGTGTTTCTCAAATCTTCAT 59.985 33.333 0.00 0.00 38.56 2.57
2942 5712 0.253020 GGAGGAGGTTTGGGGGAGTA 60.253 60.000 0.00 0.00 0.00 2.59
2947 5717 1.196766 AGGTTTGGGGGAGTACGGAC 61.197 60.000 0.00 0.00 0.00 4.79
2950 5720 1.535204 TTTGGGGGAGTACGGACGTC 61.535 60.000 7.13 7.13 0.00 4.34
2956 5726 1.505353 GAGTACGGACGTCCACCTG 59.495 63.158 32.80 19.29 35.14 4.00
2959 5729 1.073722 TACGGACGTCCACCTGTCT 59.926 57.895 32.80 8.99 35.45 3.41
2960 5730 1.239296 TACGGACGTCCACCTGTCTG 61.239 60.000 32.80 16.76 45.06 3.51
2967 5737 1.603172 CGTCCACCTGTCTGACTTGTC 60.603 57.143 9.51 0.00 0.00 3.18
2985 5755 4.537135 TGTCAGTTGAACTACATCTCCC 57.463 45.455 0.00 0.00 0.00 4.30
2991 5761 4.466726 AGTTGAACTACATCTCCCTACACC 59.533 45.833 0.00 0.00 0.00 4.16
2992 5762 4.055710 TGAACTACATCTCCCTACACCA 57.944 45.455 0.00 0.00 0.00 4.17
3027 5798 0.970427 CTGGGTTTACATGGCCCACC 60.970 60.000 13.32 6.35 46.59 4.61
3030 5801 0.626916 GGTTTACATGGCCCACCCTA 59.373 55.000 0.00 0.00 33.59 3.53
3031 5802 1.216930 GGTTTACATGGCCCACCCTAT 59.783 52.381 0.00 0.00 33.59 2.57
3059 5830 6.096705 TCCGGATTTGATGCTTATTTGATGTT 59.903 34.615 0.00 0.00 0.00 2.71
3068 5839 9.667989 TGATGCTTATTTGATGTTTATCGAATG 57.332 29.630 11.28 0.42 43.87 2.67
3070 5841 9.669353 ATGCTTATTTGATGTTTATCGAATGAC 57.331 29.630 11.28 0.00 43.87 3.06
3071 5842 8.892723 TGCTTATTTGATGTTTATCGAATGACT 58.107 29.630 11.28 0.00 43.87 3.41
3072 5843 9.162793 GCTTATTTGATGTTTATCGAATGACTG 57.837 33.333 11.28 3.06 43.87 3.51
3073 5844 9.655769 CTTATTTGATGTTTATCGAATGACTGG 57.344 33.333 11.28 0.00 43.87 4.00
3078 5852 3.938963 TGTTTATCGAATGACTGGCTTCC 59.061 43.478 0.00 0.00 0.00 3.46
3080 5854 1.207791 ATCGAATGACTGGCTTCCCT 58.792 50.000 0.00 0.00 0.00 4.20
3082 5856 2.398588 TCGAATGACTGGCTTCCCTAT 58.601 47.619 0.00 0.00 0.00 2.57
3084 5858 2.103094 CGAATGACTGGCTTCCCTATCA 59.897 50.000 0.00 0.00 32.58 2.15
3085 5859 3.471680 GAATGACTGGCTTCCCTATCAC 58.528 50.000 0.00 0.00 31.38 3.06
3086 5860 2.254152 TGACTGGCTTCCCTATCACT 57.746 50.000 0.00 0.00 0.00 3.41
3090 5864 2.114616 CTGGCTTCCCTATCACTGTCT 58.885 52.381 0.00 0.00 0.00 3.41
3094 5868 2.419297 GCTTCCCTATCACTGTCTGTGG 60.419 54.545 9.69 0.00 46.20 4.17
3098 5872 2.093973 CCCTATCACTGTCTGTGGACAC 60.094 54.545 9.69 0.00 46.19 3.67
3103 5877 1.607148 CACTGTCTGTGGACACGTCTA 59.393 52.381 2.02 0.00 46.19 2.59
3111 5885 3.386486 TGTGGACACGTCTAAACATGTC 58.614 45.455 0.00 0.00 45.52 3.06
3114 5888 3.069016 TGGACACGTCTAAACATGTCTGT 59.931 43.478 0.00 0.00 45.54 3.41
3116 5890 4.295870 GACACGTCTAAACATGTCTGTGA 58.704 43.478 0.00 0.00 43.49 3.58
3118 5892 5.113383 ACACGTCTAAACATGTCTGTGAAA 58.887 37.500 0.00 0.00 35.22 2.69
3128 5902 5.350633 ACATGTCTGTGAAAATTTGGTGTG 58.649 37.500 0.00 0.00 33.22 3.82
3137 5911 9.743057 CTGTGAAAATTTGGTGTGTCTATTTTA 57.257 29.630 0.00 0.00 30.85 1.52
3143 5917 8.532977 AATTTGGTGTGTCTATTTTAATGCAC 57.467 30.769 0.00 0.00 0.00 4.57
3146 5920 5.106869 TGGTGTGTCTATTTTAATGCACGTC 60.107 40.000 0.00 0.00 0.00 4.34
3163 5937 1.676968 TCCAGTGACATTGGACGGG 59.323 57.895 15.27 0.00 39.74 5.28
3164 5938 0.834261 TCCAGTGACATTGGACGGGA 60.834 55.000 15.27 6.05 39.74 5.14
3165 5939 0.253044 CCAGTGACATTGGACGGGAT 59.747 55.000 11.46 0.00 37.96 3.85
3166 5940 1.372582 CAGTGACATTGGACGGGATG 58.627 55.000 0.00 0.00 0.00 3.51
3167 5941 0.253044 AGTGACATTGGACGGGATGG 59.747 55.000 0.00 0.00 0.00 3.51
3168 5942 0.035439 GTGACATTGGACGGGATGGT 60.035 55.000 0.00 0.00 0.00 3.55
3169 5943 0.251916 TGACATTGGACGGGATGGTC 59.748 55.000 0.00 0.00 36.18 4.02
3175 5949 3.072468 GACGGGATGGTCCACGGA 61.072 66.667 0.00 0.00 38.64 4.69
3176 5950 2.365105 ACGGGATGGTCCACGGAT 60.365 61.111 0.00 0.00 38.64 4.18
3177 5951 2.365095 GACGGGATGGTCCACGGATC 62.365 65.000 0.00 0.00 38.64 3.36
3178 5952 2.431454 CGGGATGGTCCACGGATCA 61.431 63.158 0.51 0.51 38.64 2.92
3179 5953 1.146263 GGGATGGTCCACGGATCAC 59.854 63.158 0.00 0.00 38.15 3.06
3180 5954 1.622607 GGGATGGTCCACGGATCACA 61.623 60.000 0.00 0.00 38.15 3.58
3181 5955 0.462047 GGATGGTCCACGGATCACAC 60.462 60.000 0.00 0.00 38.15 3.82
3182 5956 0.537188 GATGGTCCACGGATCACACT 59.463 55.000 0.00 0.00 38.15 3.55
3183 5957 1.754803 GATGGTCCACGGATCACACTA 59.245 52.381 0.00 0.00 38.15 2.74
3184 5958 1.860641 TGGTCCACGGATCACACTAT 58.139 50.000 0.00 0.00 29.14 2.12
3185 5959 1.480545 TGGTCCACGGATCACACTATG 59.519 52.381 0.00 0.00 29.14 2.23
3186 5960 1.480954 GGTCCACGGATCACACTATGT 59.519 52.381 0.00 0.00 0.00 2.29
3187 5961 2.093658 GGTCCACGGATCACACTATGTT 60.094 50.000 0.00 0.00 0.00 2.71
3188 5962 3.596214 GTCCACGGATCACACTATGTTT 58.404 45.455 0.00 0.00 0.00 2.83
3189 5963 4.000988 GTCCACGGATCACACTATGTTTT 58.999 43.478 0.00 0.00 0.00 2.43
3190 5964 4.092968 GTCCACGGATCACACTATGTTTTC 59.907 45.833 0.00 0.00 0.00 2.29
3191 5965 3.374058 CCACGGATCACACTATGTTTTCC 59.626 47.826 0.00 0.00 0.00 3.13
3192 5966 4.253685 CACGGATCACACTATGTTTTCCT 58.746 43.478 0.00 0.00 30.52 3.36
3193 5967 4.695455 CACGGATCACACTATGTTTTCCTT 59.305 41.667 0.00 0.00 30.52 3.36
3194 5968 5.872617 CACGGATCACACTATGTTTTCCTTA 59.127 40.000 0.00 0.00 30.52 2.69
3195 5969 6.538742 CACGGATCACACTATGTTTTCCTTAT 59.461 38.462 0.00 0.00 30.52 1.73
3196 5970 7.709182 CACGGATCACACTATGTTTTCCTTATA 59.291 37.037 0.00 0.00 30.52 0.98
3197 5971 8.429641 ACGGATCACACTATGTTTTCCTTATAT 58.570 33.333 0.00 0.00 30.52 0.86
3198 5972 9.923143 CGGATCACACTATGTTTTCCTTATATA 57.077 33.333 0.00 0.00 30.52 0.86
3252 6026 9.533253 AAAAATCAATTGGAAGTTCTACTGTTG 57.467 29.630 5.42 2.90 0.00 3.33
3253 6027 6.824305 ATCAATTGGAAGTTCTACTGTTGG 57.176 37.500 5.42 0.00 0.00 3.77
3254 6028 5.935945 TCAATTGGAAGTTCTACTGTTGGA 58.064 37.500 5.42 0.00 0.00 3.53
3255 6029 5.763204 TCAATTGGAAGTTCTACTGTTGGAC 59.237 40.000 5.42 0.00 0.00 4.02
3256 6030 3.764237 TGGAAGTTCTACTGTTGGACC 57.236 47.619 2.25 0.00 0.00 4.46
3257 6031 3.314693 TGGAAGTTCTACTGTTGGACCT 58.685 45.455 2.25 0.00 0.00 3.85
3258 6032 3.323979 TGGAAGTTCTACTGTTGGACCTC 59.676 47.826 2.25 0.00 0.00 3.85
3259 6033 3.306849 GGAAGTTCTACTGTTGGACCTCC 60.307 52.174 2.25 3.12 0.00 4.30
3260 6034 2.258109 AGTTCTACTGTTGGACCTCCC 58.742 52.381 0.00 0.00 34.29 4.30
3261 6035 2.158143 AGTTCTACTGTTGGACCTCCCT 60.158 50.000 0.00 0.00 35.38 4.20
3262 6036 2.638363 GTTCTACTGTTGGACCTCCCTT 59.362 50.000 0.00 0.00 35.38 3.95
3263 6037 2.986050 TCTACTGTTGGACCTCCCTTT 58.014 47.619 0.00 0.00 35.38 3.11
3264 6038 3.323775 TCTACTGTTGGACCTCCCTTTT 58.676 45.455 0.00 0.00 35.38 2.27
3265 6039 3.720002 TCTACTGTTGGACCTCCCTTTTT 59.280 43.478 0.00 0.00 35.38 1.94
3285 6059 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
3287 6061 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
3288 6062 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
3302 6076 3.019589 CGCAAGCGTTCATATAAACACG 58.980 45.455 6.25 0.00 35.71 4.49
3310 6084 6.268797 CGTTCATATAAACACGCATACACT 57.731 37.500 0.00 0.00 0.00 3.55
3311 6085 6.344800 CGTTCATATAAACACGCATACACTC 58.655 40.000 0.00 0.00 0.00 3.51
3312 6086 6.020201 CGTTCATATAAACACGCATACACTCA 60.020 38.462 0.00 0.00 0.00 3.41
3313 6087 6.822073 TCATATAAACACGCATACACTCAC 57.178 37.500 0.00 0.00 0.00 3.51
3314 6088 5.751509 TCATATAAACACGCATACACTCACC 59.248 40.000 0.00 0.00 0.00 4.02
3315 6089 1.144969 AAACACGCATACACTCACCG 58.855 50.000 0.00 0.00 0.00 4.94
3316 6090 1.289109 AACACGCATACACTCACCGC 61.289 55.000 0.00 0.00 0.00 5.68
3317 6091 1.446099 CACGCATACACTCACCGCT 60.446 57.895 0.00 0.00 0.00 5.52
3318 6092 0.179148 CACGCATACACTCACCGCTA 60.179 55.000 0.00 0.00 0.00 4.26
3319 6093 0.744874 ACGCATACACTCACCGCTAT 59.255 50.000 0.00 0.00 0.00 2.97
3320 6094 1.131771 CGCATACACTCACCGCTATG 58.868 55.000 0.00 0.00 0.00 2.23
3321 6095 1.269051 CGCATACACTCACCGCTATGA 60.269 52.381 0.00 0.00 0.00 2.15
3322 6096 2.798145 CGCATACACTCACCGCTATGAA 60.798 50.000 0.00 0.00 0.00 2.57
3323 6097 2.540101 GCATACACTCACCGCTATGAAC 59.460 50.000 0.00 0.00 0.00 3.18
3324 6098 2.554806 TACACTCACCGCTATGAACG 57.445 50.000 0.00 0.00 0.00 3.95
3325 6099 0.736325 ACACTCACCGCTATGAACGC 60.736 55.000 0.00 0.00 0.00 4.84
3326 6100 0.735978 CACTCACCGCTATGAACGCA 60.736 55.000 0.00 0.00 0.00 5.24
3327 6101 0.175760 ACTCACCGCTATGAACGCAT 59.824 50.000 0.00 0.00 38.54 4.73
3328 6102 1.407618 ACTCACCGCTATGAACGCATA 59.592 47.619 0.00 0.00 35.94 3.14
3329 6103 1.787155 CTCACCGCTATGAACGCATAC 59.213 52.381 0.00 0.00 35.94 2.39
3331 6105 1.213094 ACCGCTATGAACGCATACGC 61.213 55.000 0.00 0.00 45.53 4.42
3332 6106 1.212455 CCGCTATGAACGCATACGCA 61.212 55.000 0.00 0.00 45.53 5.24
3333 6107 0.111704 CGCTATGAACGCATACGCAC 60.112 55.000 0.00 0.00 45.53 5.34
3334 6108 0.927537 GCTATGAACGCATACGCACA 59.072 50.000 0.00 0.00 45.53 4.57
3335 6109 1.332028 GCTATGAACGCATACGCACAC 60.332 52.381 0.00 0.00 45.53 3.82
3336 6110 1.257936 CTATGAACGCATACGCACACC 59.742 52.381 0.00 0.00 45.53 4.16
3337 6111 1.366111 ATGAACGCATACGCACACCC 61.366 55.000 0.00 0.00 45.53 4.61
3338 6112 1.740296 GAACGCATACGCACACCCT 60.740 57.895 0.00 0.00 45.53 4.34
3339 6113 0.458889 GAACGCATACGCACACCCTA 60.459 55.000 0.00 0.00 45.53 3.53
3340 6114 0.738412 AACGCATACGCACACCCTAC 60.738 55.000 0.00 0.00 45.53 3.18
3341 6115 1.881252 CGCATACGCACACCCTACC 60.881 63.158 0.00 0.00 38.40 3.18
3342 6116 1.523032 GCATACGCACACCCTACCC 60.523 63.158 0.00 0.00 38.36 3.69
3343 6117 1.145377 CATACGCACACCCTACCCC 59.855 63.158 0.00 0.00 0.00 4.95
3344 6118 1.002533 ATACGCACACCCTACCCCT 59.997 57.895 0.00 0.00 0.00 4.79
3345 6119 0.262580 ATACGCACACCCTACCCCTA 59.737 55.000 0.00 0.00 0.00 3.53
3346 6120 0.262580 TACGCACACCCTACCCCTAT 59.737 55.000 0.00 0.00 0.00 2.57
3347 6121 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
3348 6122 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
3349 6123 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
3350 6124 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
3351 6125 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
3352 6126 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
3353 6127 0.642710 ACCCTACCCCTATGAGCACT 59.357 55.000 0.00 0.00 0.00 4.40
3354 6128 1.051812 CCCTACCCCTATGAGCACTG 58.948 60.000 0.00 0.00 0.00 3.66
3355 6129 1.413082 CCCTACCCCTATGAGCACTGA 60.413 57.143 0.00 0.00 0.00 3.41
3356 6130 2.614259 CCTACCCCTATGAGCACTGAT 58.386 52.381 0.00 0.00 0.00 2.90
3357 6131 3.502303 CCCTACCCCTATGAGCACTGATA 60.502 52.174 0.00 0.00 0.00 2.15
3358 6132 4.160329 CCTACCCCTATGAGCACTGATAA 58.840 47.826 0.00 0.00 0.00 1.75
3359 6133 4.021016 CCTACCCCTATGAGCACTGATAAC 60.021 50.000 0.00 0.00 0.00 1.89
3360 6134 2.706190 ACCCCTATGAGCACTGATAACC 59.294 50.000 0.00 0.00 0.00 2.85
3361 6135 2.039084 CCCCTATGAGCACTGATAACCC 59.961 54.545 0.00 0.00 0.00 4.11
3362 6136 2.705658 CCCTATGAGCACTGATAACCCA 59.294 50.000 0.00 0.00 0.00 4.51
3363 6137 3.495100 CCCTATGAGCACTGATAACCCAC 60.495 52.174 0.00 0.00 0.00 4.61
3364 6138 3.134623 CCTATGAGCACTGATAACCCACA 59.865 47.826 0.00 0.00 0.00 4.17
3365 6139 2.472695 TGAGCACTGATAACCCACAC 57.527 50.000 0.00 0.00 0.00 3.82
3366 6140 1.337728 TGAGCACTGATAACCCACACG 60.338 52.381 0.00 0.00 0.00 4.49
3367 6141 0.685097 AGCACTGATAACCCACACGT 59.315 50.000 0.00 0.00 0.00 4.49
3368 6142 1.897133 AGCACTGATAACCCACACGTA 59.103 47.619 0.00 0.00 0.00 3.57
3369 6143 2.500098 AGCACTGATAACCCACACGTAT 59.500 45.455 0.00 0.00 0.00 3.06
3370 6144 3.702548 AGCACTGATAACCCACACGTATA 59.297 43.478 0.00 0.00 0.00 1.47
3371 6145 4.049186 GCACTGATAACCCACACGTATAG 58.951 47.826 0.00 0.00 0.00 1.31
3372 6146 4.617959 CACTGATAACCCACACGTATAGG 58.382 47.826 0.00 0.00 0.00 2.57
3378 6152 0.601558 CCCACACGTATAGGGGATCG 59.398 60.000 10.48 0.00 43.57 3.69
3379 6153 0.038526 CCACACGTATAGGGGATCGC 60.039 60.000 0.78 0.06 0.00 4.58
3380 6154 0.671796 CACACGTATAGGGGATCGCA 59.328 55.000 12.32 0.00 0.00 5.10
3381 6155 1.067974 CACACGTATAGGGGATCGCAA 59.932 52.381 12.32 0.00 0.00 4.85
3382 6156 1.068127 ACACGTATAGGGGATCGCAAC 59.932 52.381 12.32 3.34 0.00 4.17
3383 6157 1.067974 CACGTATAGGGGATCGCAACA 59.932 52.381 12.32 0.00 0.00 3.33
3384 6158 1.340248 ACGTATAGGGGATCGCAACAG 59.660 52.381 12.32 0.51 0.00 3.16
3385 6159 1.340248 CGTATAGGGGATCGCAACAGT 59.660 52.381 12.32 0.00 0.00 3.55
3386 6160 2.223971 CGTATAGGGGATCGCAACAGTT 60.224 50.000 12.32 0.00 0.00 3.16
3387 6161 3.740141 CGTATAGGGGATCGCAACAGTTT 60.740 47.826 12.32 0.00 0.00 2.66
3388 6162 2.871096 TAGGGGATCGCAACAGTTTT 57.129 45.000 12.32 0.00 0.00 2.43
3389 6163 1.534729 AGGGGATCGCAACAGTTTTC 58.465 50.000 12.32 0.00 0.00 2.29
3390 6164 0.168128 GGGGATCGCAACAGTTTTCG 59.832 55.000 12.32 0.00 0.00 3.46
3391 6165 1.153353 GGGATCGCAACAGTTTTCGA 58.847 50.000 4.64 9.18 35.34 3.71
3392 6166 1.737793 GGGATCGCAACAGTTTTCGAT 59.262 47.619 16.15 16.15 43.33 3.59
3393 6167 2.933906 GGGATCGCAACAGTTTTCGATA 59.066 45.455 16.17 0.00 41.11 2.92
3394 6168 3.372822 GGGATCGCAACAGTTTTCGATAA 59.627 43.478 16.17 0.00 41.11 1.75
3395 6169 4.494199 GGGATCGCAACAGTTTTCGATAAG 60.494 45.833 16.17 0.00 41.11 1.73
3396 6170 4.092968 GGATCGCAACAGTTTTCGATAAGT 59.907 41.667 16.17 0.00 41.11 2.24
3397 6171 5.290158 GGATCGCAACAGTTTTCGATAAGTA 59.710 40.000 16.17 0.00 41.11 2.24
3398 6172 6.183360 GGATCGCAACAGTTTTCGATAAGTAA 60.183 38.462 16.17 0.00 41.11 2.24
3399 6173 6.528014 TCGCAACAGTTTTCGATAAGTAAA 57.472 33.333 3.87 0.00 0.00 2.01
3400 6174 6.946165 TCGCAACAGTTTTCGATAAGTAAAA 58.054 32.000 3.87 0.00 0.00 1.52
3401 6175 7.067116 TCGCAACAGTTTTCGATAAGTAAAAG 58.933 34.615 3.87 0.00 0.00 2.27
3402 6176 6.849305 CGCAACAGTTTTCGATAAGTAAAAGT 59.151 34.615 0.00 0.00 0.00 2.66
3403 6177 7.149351 CGCAACAGTTTTCGATAAGTAAAAGTG 60.149 37.037 10.02 10.02 45.29 3.16
3406 6180 7.972422 CAGTTTTCGATAAGTAAAAGTGTCG 57.028 36.000 0.00 0.00 39.50 4.35
3407 6181 7.780313 CAGTTTTCGATAAGTAAAAGTGTCGA 58.220 34.615 0.00 0.00 39.50 4.20
3408 6182 8.270799 CAGTTTTCGATAAGTAAAAGTGTCGAA 58.729 33.333 4.17 4.17 43.60 3.71
3409 6183 8.271487 AGTTTTCGATAAGTAAAAGTGTCGAAC 58.729 33.333 7.42 0.00 44.53 3.95
3410 6184 6.695292 TTCGATAAGTAAAAGTGTCGAACC 57.305 37.500 4.17 0.00 41.41 3.62
3411 6185 5.163513 TCGATAAGTAAAAGTGTCGAACCC 58.836 41.667 0.00 0.00 35.48 4.11
3412 6186 4.925054 CGATAAGTAAAAGTGTCGAACCCA 59.075 41.667 0.00 0.00 0.00 4.51
3413 6187 5.406175 CGATAAGTAAAAGTGTCGAACCCAA 59.594 40.000 0.00 0.00 0.00 4.12
3414 6188 4.888038 AAGTAAAAGTGTCGAACCCAAC 57.112 40.909 0.00 0.00 0.00 3.77
3415 6189 2.867975 AGTAAAAGTGTCGAACCCAACG 59.132 45.455 0.00 0.00 0.00 4.10
3416 6190 2.027003 AAAAGTGTCGAACCCAACGA 57.973 45.000 0.00 0.00 37.43 3.85
3417 6191 1.578583 AAAGTGTCGAACCCAACGAG 58.421 50.000 0.00 0.00 40.37 4.18
3418 6192 0.249741 AAGTGTCGAACCCAACGAGG 60.250 55.000 0.00 0.00 40.37 4.63
3419 6193 1.111116 AGTGTCGAACCCAACGAGGA 61.111 55.000 0.00 0.00 41.22 3.71
3420 6194 0.666577 GTGTCGAACCCAACGAGGAG 60.667 60.000 0.00 0.00 41.22 3.69
3421 6195 1.737008 GTCGAACCCAACGAGGAGC 60.737 63.158 0.00 0.00 41.22 4.70
3422 6196 1.906824 TCGAACCCAACGAGGAGCT 60.907 57.895 0.00 0.00 41.22 4.09
3423 6197 0.609957 TCGAACCCAACGAGGAGCTA 60.610 55.000 0.00 0.00 41.22 3.32
3424 6198 0.245539 CGAACCCAACGAGGAGCTAA 59.754 55.000 0.00 0.00 41.22 3.09
3425 6199 1.337447 CGAACCCAACGAGGAGCTAAA 60.337 52.381 0.00 0.00 41.22 1.85
3426 6200 2.074576 GAACCCAACGAGGAGCTAAAC 58.925 52.381 0.00 0.00 41.22 2.01
3427 6201 0.037605 ACCCAACGAGGAGCTAAACG 60.038 55.000 0.00 0.00 41.22 3.60
3428 6202 1.359459 CCCAACGAGGAGCTAAACGC 61.359 60.000 0.00 0.00 41.22 4.84
3429 6203 0.669318 CCAACGAGGAGCTAAACGCA 60.669 55.000 0.00 0.00 42.61 5.24
3430 6204 0.716108 CAACGAGGAGCTAAACGCAG 59.284 55.000 0.00 0.00 42.61 5.18
3431 6205 0.601558 AACGAGGAGCTAAACGCAGA 59.398 50.000 0.00 0.00 42.61 4.26
3432 6206 0.601558 ACGAGGAGCTAAACGCAGAA 59.398 50.000 0.00 0.00 42.61 3.02
3433 6207 0.992802 CGAGGAGCTAAACGCAGAAC 59.007 55.000 0.00 0.00 42.61 3.01
3434 6208 1.668919 CGAGGAGCTAAACGCAGAACA 60.669 52.381 0.00 0.00 42.61 3.18
3435 6209 2.413837 GAGGAGCTAAACGCAGAACAA 58.586 47.619 0.00 0.00 42.61 2.83
3436 6210 2.806244 GAGGAGCTAAACGCAGAACAAA 59.194 45.455 0.00 0.00 42.61 2.83
3437 6211 3.412386 AGGAGCTAAACGCAGAACAAAT 58.588 40.909 0.00 0.00 42.61 2.32
3438 6212 4.575885 AGGAGCTAAACGCAGAACAAATA 58.424 39.130 0.00 0.00 42.61 1.40
3439 6213 5.186198 AGGAGCTAAACGCAGAACAAATAT 58.814 37.500 0.00 0.00 42.61 1.28
3440 6214 5.648092 AGGAGCTAAACGCAGAACAAATATT 59.352 36.000 0.00 0.00 42.61 1.28
3441 6215 5.965918 GGAGCTAAACGCAGAACAAATATTC 59.034 40.000 0.00 0.00 42.61 1.75
3442 6216 5.880341 AGCTAAACGCAGAACAAATATTCC 58.120 37.500 0.00 0.00 42.61 3.01
3443 6217 5.034797 GCTAAACGCAGAACAAATATTCCC 58.965 41.667 0.00 0.00 38.92 3.97
3444 6218 5.163652 GCTAAACGCAGAACAAATATTCCCT 60.164 40.000 0.00 0.00 38.92 4.20
3445 6219 4.965119 AACGCAGAACAAATATTCCCTC 57.035 40.909 0.00 0.00 0.00 4.30
3446 6220 3.950397 ACGCAGAACAAATATTCCCTCA 58.050 40.909 0.00 0.00 0.00 3.86
3447 6221 4.331968 ACGCAGAACAAATATTCCCTCAA 58.668 39.130 0.00 0.00 0.00 3.02
3448 6222 4.396166 ACGCAGAACAAATATTCCCTCAAG 59.604 41.667 0.00 0.00 0.00 3.02
3449 6223 4.396166 CGCAGAACAAATATTCCCTCAAGT 59.604 41.667 0.00 0.00 0.00 3.16
3450 6224 5.106157 CGCAGAACAAATATTCCCTCAAGTT 60.106 40.000 0.00 0.00 0.00 2.66
3451 6225 6.325596 GCAGAACAAATATTCCCTCAAGTTC 58.674 40.000 0.00 0.00 35.58 3.01
3452 6226 6.151817 GCAGAACAAATATTCCCTCAAGTTCT 59.848 38.462 0.00 0.00 43.52 3.01
3453 6227 7.336931 GCAGAACAAATATTCCCTCAAGTTCTA 59.663 37.037 0.00 0.00 41.55 2.10
3454 6228 9.401058 CAGAACAAATATTCCCTCAAGTTCTAT 57.599 33.333 0.00 0.00 41.55 1.98
3455 6229 9.620259 AGAACAAATATTCCCTCAAGTTCTATC 57.380 33.333 0.00 0.00 41.64 2.08
3456 6230 8.438676 AACAAATATTCCCTCAAGTTCTATCG 57.561 34.615 0.00 0.00 0.00 2.92
3457 6231 7.792032 ACAAATATTCCCTCAAGTTCTATCGA 58.208 34.615 0.00 0.00 0.00 3.59
3458 6232 7.711339 ACAAATATTCCCTCAAGTTCTATCGAC 59.289 37.037 0.00 0.00 0.00 4.20
3459 6233 4.674281 ATTCCCTCAAGTTCTATCGACC 57.326 45.455 0.00 0.00 0.00 4.79
3460 6234 3.095912 TCCCTCAAGTTCTATCGACCA 57.904 47.619 0.00 0.00 0.00 4.02
3461 6235 2.758979 TCCCTCAAGTTCTATCGACCAC 59.241 50.000 0.00 0.00 0.00 4.16
3462 6236 2.159085 CCCTCAAGTTCTATCGACCACC 60.159 54.545 0.00 0.00 0.00 4.61
3463 6237 2.479730 CCTCAAGTTCTATCGACCACCG 60.480 54.545 0.00 0.00 40.25 4.94
3473 6247 1.830279 TCGACCACCGATACAACTCT 58.170 50.000 0.00 0.00 43.23 3.24
3474 6248 2.989909 TCGACCACCGATACAACTCTA 58.010 47.619 0.00 0.00 43.23 2.43
3475 6249 2.679837 TCGACCACCGATACAACTCTAC 59.320 50.000 0.00 0.00 43.23 2.59
3476 6250 2.538333 CGACCACCGATACAACTCTACG 60.538 54.545 0.00 0.00 41.76 3.51
3477 6251 1.133790 ACCACCGATACAACTCTACGC 59.866 52.381 0.00 0.00 0.00 4.42
3478 6252 1.133598 CCACCGATACAACTCTACGCA 59.866 52.381 0.00 0.00 0.00 5.24
3479 6253 2.182825 CACCGATACAACTCTACGCAC 58.817 52.381 0.00 0.00 0.00 5.34
3480 6254 1.202110 ACCGATACAACTCTACGCACG 60.202 52.381 0.00 0.00 0.00 5.34
3481 6255 0.838229 CGATACAACTCTACGCACGC 59.162 55.000 0.00 0.00 0.00 5.34
3482 6256 1.531264 CGATACAACTCTACGCACGCT 60.531 52.381 0.00 0.00 0.00 5.07
3483 6257 2.527100 GATACAACTCTACGCACGCTT 58.473 47.619 0.00 0.00 0.00 4.68
3484 6258 1.693467 TACAACTCTACGCACGCTTG 58.307 50.000 0.00 0.00 0.00 4.01
3485 6259 0.031585 ACAACTCTACGCACGCTTGA 59.968 50.000 0.00 0.00 0.00 3.02
3486 6260 1.336887 ACAACTCTACGCACGCTTGAT 60.337 47.619 0.00 0.00 0.00 2.57
3487 6261 1.059692 CAACTCTACGCACGCTTGATG 59.940 52.381 0.00 0.00 0.00 3.07
3488 6262 0.243907 ACTCTACGCACGCTTGATGT 59.756 50.000 0.00 0.00 0.00 3.06
3489 6263 1.336887 ACTCTACGCACGCTTGATGTT 60.337 47.619 0.00 0.00 0.00 2.71
3490 6264 1.321743 CTCTACGCACGCTTGATGTTC 59.678 52.381 0.00 0.00 0.00 3.18
3491 6265 0.023732 CTACGCACGCTTGATGTTCG 59.976 55.000 0.00 0.00 0.00 3.95
3492 6266 1.951181 TACGCACGCTTGATGTTCGC 61.951 55.000 0.00 0.00 0.00 4.70
3493 6267 2.863153 GCACGCTTGATGTTCGCT 59.137 55.556 0.00 0.00 0.00 4.93
3494 6268 1.207593 GCACGCTTGATGTTCGCTT 59.792 52.632 0.00 0.00 0.00 4.68
3495 6269 0.385974 GCACGCTTGATGTTCGCTTT 60.386 50.000 0.00 0.00 0.00 3.51
3496 6270 1.136085 GCACGCTTGATGTTCGCTTTA 60.136 47.619 0.00 0.00 0.00 1.85
3497 6271 2.495939 CACGCTTGATGTTCGCTTTAC 58.504 47.619 0.00 0.00 0.00 2.01
3498 6272 1.463444 ACGCTTGATGTTCGCTTTACC 59.537 47.619 0.00 0.00 0.00 2.85
3499 6273 1.732259 CGCTTGATGTTCGCTTTACCT 59.268 47.619 0.00 0.00 0.00 3.08
3500 6274 2.927477 CGCTTGATGTTCGCTTTACCTA 59.073 45.455 0.00 0.00 0.00 3.08
3501 6275 3.000322 CGCTTGATGTTCGCTTTACCTAG 60.000 47.826 0.00 0.00 0.00 3.02
3502 6276 4.181578 GCTTGATGTTCGCTTTACCTAGA 58.818 43.478 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.486657 CACTGAGAAAACTTTCATCCAGGTTA 59.513 38.462 16.42 0.00 39.61 2.85
25 26 4.823989 CACTGAGAAAACTTTCATCCAGGT 59.176 41.667 16.42 6.47 39.61 4.00
31 32 5.067805 GGGTTCACACTGAGAAAACTTTCAT 59.932 40.000 5.07 0.00 39.61 2.57
74 75 5.766670 TGATCCTGGTATCAATGAAGCATTC 59.233 40.000 6.42 0.00 38.06 2.67
75 76 5.698104 TGATCCTGGTATCAATGAAGCATT 58.302 37.500 6.42 0.00 32.97 3.56
77 78 4.776435 TGATCCTGGTATCAATGAAGCA 57.224 40.909 6.42 0.00 32.97 3.91
117 119 4.692625 ACTCAATGACGAAGACTTTGATGG 59.307 41.667 9.54 0.00 42.62 3.51
148 150 5.125739 ACCGATCTAGTCAATTTCTTCGAGT 59.874 40.000 0.00 0.00 0.00 4.18
160 162 2.416836 CCGCTCAAAACCGATCTAGTCA 60.417 50.000 0.00 0.00 0.00 3.41
164 166 0.804544 CGCCGCTCAAAACCGATCTA 60.805 55.000 0.00 0.00 0.00 1.98
195 197 1.274703 ATGCCCAATCGGAGACCAGT 61.275 55.000 0.00 0.00 42.51 4.00
203 205 2.124193 TGCCTCATGCCCAATCGG 60.124 61.111 0.00 0.00 40.16 4.18
218 220 3.188786 GACAGATGGCGACCGTGC 61.189 66.667 0.00 0.00 0.00 5.34
226 228 0.842635 ATCCTCCCAAGACAGATGGC 59.157 55.000 0.00 0.00 36.58 4.40
515 517 2.793017 TCCCCAATTCATCCCATCTCT 58.207 47.619 0.00 0.00 0.00 3.10
516 518 3.600448 TTCCCCAATTCATCCCATCTC 57.400 47.619 0.00 0.00 0.00 2.75
517 519 3.853207 CATTCCCCAATTCATCCCATCT 58.147 45.455 0.00 0.00 0.00 2.90
518 520 2.301009 GCATTCCCCAATTCATCCCATC 59.699 50.000 0.00 0.00 0.00 3.51
519 521 2.332117 GCATTCCCCAATTCATCCCAT 58.668 47.619 0.00 0.00 0.00 4.00
520 522 1.792115 GCATTCCCCAATTCATCCCA 58.208 50.000 0.00 0.00 0.00 4.37
521 523 0.675633 CGCATTCCCCAATTCATCCC 59.324 55.000 0.00 0.00 0.00 3.85
522 524 0.675633 CCGCATTCCCCAATTCATCC 59.324 55.000 0.00 0.00 0.00 3.51
523 525 1.691196 TCCGCATTCCCCAATTCATC 58.309 50.000 0.00 0.00 0.00 2.92
524 526 1.965643 CATCCGCATTCCCCAATTCAT 59.034 47.619 0.00 0.00 0.00 2.57
525 527 1.401761 CATCCGCATTCCCCAATTCA 58.598 50.000 0.00 0.00 0.00 2.57
526 528 0.675633 CCATCCGCATTCCCCAATTC 59.324 55.000 0.00 0.00 0.00 2.17
527 529 0.032217 ACCATCCGCATTCCCCAATT 60.032 50.000 0.00 0.00 0.00 2.32
528 530 0.756442 CACCATCCGCATTCCCCAAT 60.756 55.000 0.00 0.00 0.00 3.16
529 531 1.379710 CACCATCCGCATTCCCCAA 60.380 57.895 0.00 0.00 0.00 4.12
530 532 2.275089 CACCATCCGCATTCCCCA 59.725 61.111 0.00 0.00 0.00 4.96
531 533 1.990160 TACCACCATCCGCATTCCCC 61.990 60.000 0.00 0.00 0.00 4.81
532 534 0.106918 TTACCACCATCCGCATTCCC 60.107 55.000 0.00 0.00 0.00 3.97
536 538 2.365582 GAGTTTTACCACCATCCGCAT 58.634 47.619 0.00 0.00 0.00 4.73
539 541 0.725117 GCGAGTTTTACCACCATCCG 59.275 55.000 0.00 0.00 0.00 4.18
546 548 1.669760 CCGCCAGCGAGTTTTACCA 60.670 57.895 14.67 0.00 42.83 3.25
571 573 3.178865 TGGGGTTTTACTCCTCACTAGG 58.821 50.000 0.00 0.00 40.26 3.02
573 575 3.178865 CCTGGGGTTTTACTCCTCACTA 58.821 50.000 0.00 0.00 40.26 2.74
576 578 0.696501 GCCTGGGGTTTTACTCCTCA 59.303 55.000 0.00 0.00 40.26 3.86
591 593 4.530857 CCCTTACTCCCGCGCCTG 62.531 72.222 0.00 0.00 0.00 4.85
633 769 6.148811 TGTCTCGTTGAAAGAAAAAGTCACTT 59.851 34.615 0.00 0.00 0.00 3.16
665 801 9.599866 TCAGATAATATCATGACGACAAAAGTT 57.400 29.630 0.00 0.00 0.00 2.66
693 829 5.817296 AGCGTATTTATTCAGTCTGCAATCA 59.183 36.000 0.00 0.00 0.00 2.57
701 837 8.575565 TGAGTCATAAGCGTATTTATTCAGTC 57.424 34.615 0.00 0.00 0.00 3.51
710 849 5.847111 TGGTACTGAGTCATAAGCGTATT 57.153 39.130 0.00 0.00 0.00 1.89
779 918 4.271049 CGAGATTTTGATGCCTTCACGTAT 59.729 41.667 0.00 0.00 32.84 3.06
780 919 3.616821 CGAGATTTTGATGCCTTCACGTA 59.383 43.478 0.00 0.00 32.84 3.57
781 920 2.416547 CGAGATTTTGATGCCTTCACGT 59.583 45.455 0.00 0.00 32.84 4.49
790 929 2.416547 AGTGCCGTTCGAGATTTTGATG 59.583 45.455 0.00 0.00 0.00 3.07
823 962 2.158370 TCCGCCTACTAGAATCCATCCA 60.158 50.000 0.00 0.00 0.00 3.41
824 963 2.494073 CTCCGCCTACTAGAATCCATCC 59.506 54.545 0.00 0.00 0.00 3.51
825 964 3.422796 TCTCCGCCTACTAGAATCCATC 58.577 50.000 0.00 0.00 0.00 3.51
826 965 3.527507 TCTCCGCCTACTAGAATCCAT 57.472 47.619 0.00 0.00 0.00 3.41
840 979 1.817099 CTGGCTTGGTGATCTCCGC 60.817 63.158 9.20 7.16 0.00 5.54
865 1004 2.685897 CCGTGTAGAGAGGAAGGAGAAG 59.314 54.545 0.00 0.00 0.00 2.85
911 3545 5.163642 GGCTATAGGAGTGATACGTACCATG 60.164 48.000 0.00 0.00 0.00 3.66
956 3593 1.400846 CGCGGCTAGTACGGATATGAT 59.599 52.381 0.00 0.00 0.00 2.45
957 3594 0.800631 CGCGGCTAGTACGGATATGA 59.199 55.000 0.00 0.00 0.00 2.15
958 3595 0.797249 GCGCGGCTAGTACGGATATG 60.797 60.000 8.83 0.00 0.00 1.78
970 3607 4.944372 GTATACTGCGGCGCGGCT 62.944 66.667 38.07 27.54 38.71 5.52
971 3608 4.944372 AGTATACTGCGGCGCGGC 62.944 66.667 38.07 30.55 38.71 6.53
1001 3643 1.452651 GCCATGGCTAGCTGCTTCA 60.453 57.895 29.98 3.66 42.39 3.02
1458 4118 1.745115 GCTGCTACCCATGAACGCA 60.745 57.895 0.00 0.00 0.00 5.24
1465 4125 1.097547 GCGAACATGCTGCTACCCAT 61.098 55.000 0.00 0.00 0.00 4.00
1467 4127 2.813179 CGCGAACATGCTGCTACCC 61.813 63.158 0.00 0.00 0.00 3.69
1830 4517 1.738099 GATGCAGTTGTCCGCGTCT 60.738 57.895 4.92 0.00 40.33 4.18
2095 4809 2.112297 GACGGCAGGGTGGTTCAA 59.888 61.111 0.00 0.00 0.00 2.69
2489 5206 8.159344 AGTTTTGAACTTCTACATTTCTCCAG 57.841 34.615 0.00 0.00 39.04 3.86
2502 5219 5.746539 CAGAGAGCAAGAGTTTTGAACTTC 58.253 41.667 0.00 0.00 43.03 3.01
2505 5222 3.882982 GCAGAGAGCAAGAGTTTTGAAC 58.117 45.455 0.00 0.00 44.79 3.18
2565 5290 1.179152 TCATGTTTGGAGCCATGCTG 58.821 50.000 0.00 0.00 39.88 4.41
2586 5311 2.159014 TGGAACGTACTCCATGGTATGC 60.159 50.000 12.58 3.86 40.71 3.14
2636 5369 5.463724 GCCGAGATAGAAAACTCCATGTAAG 59.536 44.000 0.00 0.00 0.00 2.34
2653 5396 1.774110 AGTCTGTGAGATGCCGAGAT 58.226 50.000 0.00 0.00 0.00 2.75
2655 5398 1.067283 ACAAGTCTGTGAGATGCCGAG 60.067 52.381 0.00 0.00 33.30 4.63
2852 5617 9.449719 AGACTTCGGAGTTTCAAACATATTTAT 57.550 29.630 0.00 0.00 35.88 1.40
2853 5618 8.717821 CAGACTTCGGAGTTTCAAACATATTTA 58.282 33.333 0.00 0.00 35.88 1.40
2861 5626 4.766375 ACTTCAGACTTCGGAGTTTCAAA 58.234 39.130 0.00 0.00 35.88 2.69
2907 5677 2.887783 TCCTCCGATTCTCTACTGCATC 59.112 50.000 0.00 0.00 0.00 3.91
2913 5683 3.181474 CCAAACCTCCTCCGATTCTCTAC 60.181 52.174 0.00 0.00 0.00 2.59
2916 5686 1.134371 CCCAAACCTCCTCCGATTCTC 60.134 57.143 0.00 0.00 0.00 2.87
2918 5688 0.107165 CCCCAAACCTCCTCCGATTC 60.107 60.000 0.00 0.00 0.00 2.52
2921 5691 2.609610 CCCCCAAACCTCCTCCGA 60.610 66.667 0.00 0.00 0.00 4.55
2942 5712 2.203451 AGACAGGTGGACGTCCGT 60.203 61.111 28.70 20.20 39.43 4.69
2947 5717 0.389391 ACAAGTCAGACAGGTGGACG 59.611 55.000 2.66 0.00 36.68 4.79
2959 5729 6.161855 AGATGTAGTTCAACTGACAAGTCA 57.838 37.500 0.00 2.56 34.77 3.41
2960 5730 5.635700 GGAGATGTAGTTCAACTGACAAGTC 59.364 44.000 0.00 2.92 34.77 3.01
2967 5737 5.411781 GTGTAGGGAGATGTAGTTCAACTG 58.588 45.833 0.00 0.00 29.33 3.16
3005 5776 0.623723 GGGCCATGTAAACCCAGAGA 59.376 55.000 4.39 0.00 43.64 3.10
3010 5781 1.684391 GGGTGGGCCATGTAAACCC 60.684 63.158 10.70 11.18 43.56 4.11
3015 5786 1.493022 GACAATAGGGTGGGCCATGTA 59.507 52.381 10.70 1.74 36.17 2.29
3027 5798 3.480470 AGCATCAAATCCGGACAATAGG 58.520 45.455 6.12 0.00 0.00 2.57
3030 5801 6.096705 TCAAATAAGCATCAAATCCGGACAAT 59.903 34.615 6.12 0.00 0.00 2.71
3031 5802 5.417266 TCAAATAAGCATCAAATCCGGACAA 59.583 36.000 6.12 0.00 0.00 3.18
3059 5830 2.771943 AGGGAAGCCAGTCATTCGATAA 59.228 45.455 0.00 0.00 0.00 1.75
3063 5834 2.103094 TGATAGGGAAGCCAGTCATTCG 59.897 50.000 0.00 0.00 0.00 3.34
3065 5836 3.118112 CAGTGATAGGGAAGCCAGTCATT 60.118 47.826 0.00 0.00 0.00 2.57
3066 5837 2.437281 CAGTGATAGGGAAGCCAGTCAT 59.563 50.000 0.00 0.00 0.00 3.06
3067 5838 1.833630 CAGTGATAGGGAAGCCAGTCA 59.166 52.381 0.00 0.00 0.00 3.41
3068 5839 1.834263 ACAGTGATAGGGAAGCCAGTC 59.166 52.381 0.00 0.00 0.00 3.51
3070 5841 2.114616 AGACAGTGATAGGGAAGCCAG 58.885 52.381 0.00 0.00 0.00 4.85
3071 5842 1.833630 CAGACAGTGATAGGGAAGCCA 59.166 52.381 0.00 0.00 0.00 4.75
3072 5843 1.834263 ACAGACAGTGATAGGGAAGCC 59.166 52.381 0.00 0.00 0.00 4.35
3098 5872 7.113404 CCAAATTTTCACAGACATGTTTAGACG 59.887 37.037 0.00 0.00 37.65 4.18
3103 5877 6.313411 CACACCAAATTTTCACAGACATGTTT 59.687 34.615 0.00 0.00 37.65 2.83
3111 5885 8.647143 AAAATAGACACACCAAATTTTCACAG 57.353 30.769 0.00 0.00 0.00 3.66
3116 5890 9.553064 TGCATTAAAATAGACACACCAAATTTT 57.447 25.926 0.00 0.00 34.89 1.82
3118 5892 7.328249 CGTGCATTAAAATAGACACACCAAATT 59.672 33.333 0.00 0.00 0.00 1.82
3128 5902 5.350365 TCACTGGACGTGCATTAAAATAGAC 59.650 40.000 11.16 0.00 43.46 2.59
3146 5920 0.253044 ATCCCGTCCAATGTCACTGG 59.747 55.000 0.00 0.00 35.05 4.00
3158 5932 2.365095 GATCCGTGGACCATCCCGTC 62.365 65.000 0.00 0.00 35.03 4.79
3159 5933 2.365105 ATCCGTGGACCATCCCGT 60.365 61.111 0.00 0.00 35.03 5.28
3160 5934 2.421739 GATCCGTGGACCATCCCG 59.578 66.667 0.00 0.00 35.03 5.14
3161 5935 1.146263 GTGATCCGTGGACCATCCC 59.854 63.158 0.00 0.00 35.03 3.85
3162 5936 0.462047 GTGTGATCCGTGGACCATCC 60.462 60.000 0.00 0.00 36.96 3.51
3163 5937 0.537188 AGTGTGATCCGTGGACCATC 59.463 55.000 0.00 0.00 0.00 3.51
3164 5938 1.860641 TAGTGTGATCCGTGGACCAT 58.139 50.000 0.00 0.00 0.00 3.55
3165 5939 1.480545 CATAGTGTGATCCGTGGACCA 59.519 52.381 0.00 0.00 0.00 4.02
3166 5940 1.480954 ACATAGTGTGATCCGTGGACC 59.519 52.381 0.00 0.00 0.00 4.46
3167 5941 2.961526 ACATAGTGTGATCCGTGGAC 57.038 50.000 0.00 0.00 0.00 4.02
3168 5942 3.973206 AAACATAGTGTGATCCGTGGA 57.027 42.857 0.00 0.00 0.00 4.02
3169 5943 3.374058 GGAAAACATAGTGTGATCCGTGG 59.626 47.826 0.00 0.00 29.91 4.94
3170 5944 4.253685 AGGAAAACATAGTGTGATCCGTG 58.746 43.478 0.00 0.00 39.52 4.94
3171 5945 4.553330 AGGAAAACATAGTGTGATCCGT 57.447 40.909 0.00 0.00 39.52 4.69
3172 5946 8.833231 ATATAAGGAAAACATAGTGTGATCCG 57.167 34.615 0.00 0.00 39.52 4.18
3226 6000 9.533253 CAACAGTAGAACTTCCAATTGATTTTT 57.467 29.630 7.12 0.00 0.00 1.94
3227 6001 8.143835 CCAACAGTAGAACTTCCAATTGATTTT 58.856 33.333 7.12 0.00 0.00 1.82
3228 6002 7.505585 TCCAACAGTAGAACTTCCAATTGATTT 59.494 33.333 7.12 0.00 0.00 2.17
3229 6003 7.004086 TCCAACAGTAGAACTTCCAATTGATT 58.996 34.615 7.12 0.00 0.00 2.57
3230 6004 6.431234 GTCCAACAGTAGAACTTCCAATTGAT 59.569 38.462 7.12 0.00 0.00 2.57
3231 6005 5.763204 GTCCAACAGTAGAACTTCCAATTGA 59.237 40.000 7.12 0.00 0.00 2.57
3232 6006 5.048713 GGTCCAACAGTAGAACTTCCAATTG 60.049 44.000 0.00 0.00 0.00 2.32
3233 6007 5.070685 GGTCCAACAGTAGAACTTCCAATT 58.929 41.667 0.00 0.00 0.00 2.32
3234 6008 4.351111 AGGTCCAACAGTAGAACTTCCAAT 59.649 41.667 0.00 0.00 0.00 3.16
3235 6009 3.714798 AGGTCCAACAGTAGAACTTCCAA 59.285 43.478 0.00 0.00 0.00 3.53
3236 6010 3.314693 AGGTCCAACAGTAGAACTTCCA 58.685 45.455 0.00 0.00 0.00 3.53
3237 6011 3.306849 GGAGGTCCAACAGTAGAACTTCC 60.307 52.174 0.00 0.00 35.64 3.46
3238 6012 3.306849 GGGAGGTCCAACAGTAGAACTTC 60.307 52.174 0.00 0.00 37.91 3.01
3239 6013 2.638363 GGGAGGTCCAACAGTAGAACTT 59.362 50.000 0.00 0.00 37.91 2.66
3240 6014 2.158143 AGGGAGGTCCAACAGTAGAACT 60.158 50.000 0.00 0.00 38.24 3.01
3241 6015 2.258109 AGGGAGGTCCAACAGTAGAAC 58.742 52.381 0.00 0.00 38.24 3.01
3242 6016 2.715763 AGGGAGGTCCAACAGTAGAA 57.284 50.000 0.00 0.00 38.24 2.10
3243 6017 2.715763 AAGGGAGGTCCAACAGTAGA 57.284 50.000 0.00 0.00 38.24 2.59
3244 6018 3.790089 AAAAGGGAGGTCCAACAGTAG 57.210 47.619 0.00 0.00 38.24 2.57
3263 6037 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
3264 6038 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
3265 6039 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
3266 6040 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
3267 6041 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
3268 6042 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
3269 6043 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
3270 6044 0.939577 ACGCTTGCGTCTGTACTGTG 60.940 55.000 15.19 0.00 0.00 3.66
3271 6045 0.249322 AACGCTTGCGTCTGTACTGT 60.249 50.000 20.87 0.00 0.00 3.55
3272 6046 0.435008 GAACGCTTGCGTCTGTACTG 59.565 55.000 20.87 0.00 0.00 2.74
3273 6047 0.031585 TGAACGCTTGCGTCTGTACT 59.968 50.000 20.87 4.26 0.00 2.73
3274 6048 1.068474 ATGAACGCTTGCGTCTGTAC 58.932 50.000 20.87 10.59 0.00 2.90
3275 6049 2.640346 TATGAACGCTTGCGTCTGTA 57.360 45.000 20.87 10.79 0.00 2.74
3276 6050 2.010145 ATATGAACGCTTGCGTCTGT 57.990 45.000 20.87 11.69 0.00 3.41
3277 6051 4.201676 TGTTTATATGAACGCTTGCGTCTG 60.202 41.667 20.87 0.00 32.18 3.51
3278 6052 3.930229 TGTTTATATGAACGCTTGCGTCT 59.070 39.130 20.87 11.16 32.18 4.18
3279 6053 4.019867 GTGTTTATATGAACGCTTGCGTC 58.980 43.478 20.87 14.17 37.14 5.19
3280 6054 3.482923 CGTGTTTATATGAACGCTTGCGT 60.483 43.478 15.19 15.19 37.76 5.24
3281 6055 3.019589 CGTGTTTATATGAACGCTTGCG 58.980 45.455 18.36 13.70 37.76 4.85
3287 6061 6.020201 TGAGTGTATGCGTGTTTATATGAACG 60.020 38.462 5.95 2.25 39.00 3.95
3288 6062 7.117454 GTGAGTGTATGCGTGTTTATATGAAC 58.883 38.462 3.48 3.48 0.00 3.18
3289 6063 6.256975 GGTGAGTGTATGCGTGTTTATATGAA 59.743 38.462 0.00 0.00 0.00 2.57
3290 6064 5.751509 GGTGAGTGTATGCGTGTTTATATGA 59.248 40.000 0.00 0.00 0.00 2.15
3291 6065 5.332280 CGGTGAGTGTATGCGTGTTTATATG 60.332 44.000 0.00 0.00 0.00 1.78
3292 6066 4.743151 CGGTGAGTGTATGCGTGTTTATAT 59.257 41.667 0.00 0.00 0.00 0.86
3293 6067 4.106909 CGGTGAGTGTATGCGTGTTTATA 58.893 43.478 0.00 0.00 0.00 0.98
3294 6068 2.927477 CGGTGAGTGTATGCGTGTTTAT 59.073 45.455 0.00 0.00 0.00 1.40
3295 6069 2.330286 CGGTGAGTGTATGCGTGTTTA 58.670 47.619 0.00 0.00 0.00 2.01
3296 6070 1.144969 CGGTGAGTGTATGCGTGTTT 58.855 50.000 0.00 0.00 0.00 2.83
3297 6071 1.289109 GCGGTGAGTGTATGCGTGTT 61.289 55.000 0.00 0.00 0.00 3.32
3298 6072 1.736645 GCGGTGAGTGTATGCGTGT 60.737 57.895 0.00 0.00 0.00 4.49
3299 6073 0.179148 TAGCGGTGAGTGTATGCGTG 60.179 55.000 0.00 0.00 0.00 5.34
3300 6074 0.744874 ATAGCGGTGAGTGTATGCGT 59.255 50.000 0.00 0.00 0.00 5.24
3301 6075 1.131771 CATAGCGGTGAGTGTATGCG 58.868 55.000 0.00 0.00 0.00 4.73
3302 6076 2.509052 TCATAGCGGTGAGTGTATGC 57.491 50.000 0.00 0.00 0.00 3.14
3303 6077 2.789339 CGTTCATAGCGGTGAGTGTATG 59.211 50.000 0.00 0.00 0.00 2.39
3304 6078 2.798499 GCGTTCATAGCGGTGAGTGTAT 60.798 50.000 0.00 0.00 0.00 2.29
3305 6079 1.468565 GCGTTCATAGCGGTGAGTGTA 60.469 52.381 0.00 0.00 0.00 2.90
3306 6080 0.736325 GCGTTCATAGCGGTGAGTGT 60.736 55.000 0.00 0.00 0.00 3.55
3307 6081 0.735978 TGCGTTCATAGCGGTGAGTG 60.736 55.000 0.00 0.00 37.44 3.51
3308 6082 0.175760 ATGCGTTCATAGCGGTGAGT 59.824 50.000 0.00 0.00 37.44 3.41
3309 6083 1.787155 GTATGCGTTCATAGCGGTGAG 59.213 52.381 0.00 0.00 35.96 3.51
3310 6084 1.847818 GTATGCGTTCATAGCGGTGA 58.152 50.000 0.00 0.00 35.96 4.02
3311 6085 0.502695 CGTATGCGTTCATAGCGGTG 59.497 55.000 0.00 0.00 35.96 4.94
3312 6086 1.213094 GCGTATGCGTTCATAGCGGT 61.213 55.000 4.81 0.00 40.81 5.68
3313 6087 1.487231 GCGTATGCGTTCATAGCGG 59.513 57.895 4.81 0.00 40.81 5.52
3324 6098 1.523032 GGGTAGGGTGTGCGTATGC 60.523 63.158 0.00 0.00 43.20 3.14
3325 6099 1.145377 GGGGTAGGGTGTGCGTATG 59.855 63.158 0.00 0.00 0.00 2.39
3326 6100 0.262580 TAGGGGTAGGGTGTGCGTAT 59.737 55.000 0.00 0.00 0.00 3.06
3327 6101 0.262580 ATAGGGGTAGGGTGTGCGTA 59.737 55.000 0.00 0.00 0.00 4.42
3328 6102 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
3329 6103 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
3330 6104 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
3331 6105 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
3332 6106 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
3333 6107 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
3334 6108 0.642710 AGTGCTCATAGGGGTAGGGT 59.357 55.000 0.00 0.00 0.00 4.34
3335 6109 1.051812 CAGTGCTCATAGGGGTAGGG 58.948 60.000 0.00 0.00 0.00 3.53
3336 6110 2.088104 TCAGTGCTCATAGGGGTAGG 57.912 55.000 0.00 0.00 0.00 3.18
3337 6111 4.021016 GGTTATCAGTGCTCATAGGGGTAG 60.021 50.000 0.00 0.00 0.00 3.18
3338 6112 3.901844 GGTTATCAGTGCTCATAGGGGTA 59.098 47.826 0.00 0.00 0.00 3.69
3339 6113 2.706190 GGTTATCAGTGCTCATAGGGGT 59.294 50.000 0.00 0.00 0.00 4.95
3340 6114 2.039084 GGGTTATCAGTGCTCATAGGGG 59.961 54.545 0.00 0.00 0.00 4.79
3341 6115 2.705658 TGGGTTATCAGTGCTCATAGGG 59.294 50.000 0.00 0.00 0.00 3.53
3342 6116 3.134623 TGTGGGTTATCAGTGCTCATAGG 59.865 47.826 0.00 0.00 0.00 2.57
3343 6117 4.122776 GTGTGGGTTATCAGTGCTCATAG 58.877 47.826 0.00 0.00 0.00 2.23
3344 6118 3.430236 CGTGTGGGTTATCAGTGCTCATA 60.430 47.826 0.00 0.00 0.00 2.15
3345 6119 2.677902 CGTGTGGGTTATCAGTGCTCAT 60.678 50.000 0.00 0.00 0.00 2.90
3346 6120 1.337728 CGTGTGGGTTATCAGTGCTCA 60.338 52.381 0.00 0.00 0.00 4.26
3347 6121 1.337823 ACGTGTGGGTTATCAGTGCTC 60.338 52.381 0.00 0.00 0.00 4.26
3348 6122 0.685097 ACGTGTGGGTTATCAGTGCT 59.315 50.000 0.00 0.00 0.00 4.40
3349 6123 2.373540 TACGTGTGGGTTATCAGTGC 57.626 50.000 0.00 0.00 0.00 4.40
3350 6124 4.500887 CCCTATACGTGTGGGTTATCAGTG 60.501 50.000 13.53 0.00 36.32 3.66
3351 6125 3.640029 CCCTATACGTGTGGGTTATCAGT 59.360 47.826 13.53 0.00 36.32 3.41
3352 6126 3.006537 CCCCTATACGTGTGGGTTATCAG 59.993 52.174 13.53 0.00 39.31 2.90
3353 6127 2.967201 CCCCTATACGTGTGGGTTATCA 59.033 50.000 13.53 0.00 39.31 2.15
3354 6128 3.233507 TCCCCTATACGTGTGGGTTATC 58.766 50.000 13.53 0.00 39.31 1.75
3355 6129 3.333313 TCCCCTATACGTGTGGGTTAT 57.667 47.619 13.53 0.00 39.31 1.89
3356 6130 2.844654 TCCCCTATACGTGTGGGTTA 57.155 50.000 13.53 0.00 39.31 2.85
3357 6131 2.044758 GATCCCCTATACGTGTGGGTT 58.955 52.381 13.53 2.74 39.31 4.11
3358 6132 1.713297 GATCCCCTATACGTGTGGGT 58.287 55.000 13.53 0.00 39.31 4.51
3359 6133 0.601558 CGATCCCCTATACGTGTGGG 59.398 60.000 7.78 7.78 40.59 4.61
3360 6134 0.038526 GCGATCCCCTATACGTGTGG 60.039 60.000 0.00 0.00 0.00 4.17
3361 6135 0.671796 TGCGATCCCCTATACGTGTG 59.328 55.000 0.00 0.00 0.00 3.82
3362 6136 1.068127 GTTGCGATCCCCTATACGTGT 59.932 52.381 0.00 0.00 0.00 4.49
3363 6137 1.067974 TGTTGCGATCCCCTATACGTG 59.932 52.381 0.00 0.00 0.00 4.49
3364 6138 1.340248 CTGTTGCGATCCCCTATACGT 59.660 52.381 0.00 0.00 0.00 3.57
3365 6139 1.340248 ACTGTTGCGATCCCCTATACG 59.660 52.381 0.00 0.00 0.00 3.06
3366 6140 3.470645 AACTGTTGCGATCCCCTATAC 57.529 47.619 0.00 0.00 0.00 1.47
3367 6141 4.448210 GAAAACTGTTGCGATCCCCTATA 58.552 43.478 0.00 0.00 0.00 1.31
3368 6142 3.279434 GAAAACTGTTGCGATCCCCTAT 58.721 45.455 0.00 0.00 0.00 2.57
3369 6143 2.706890 GAAAACTGTTGCGATCCCCTA 58.293 47.619 0.00 0.00 0.00 3.53
3370 6144 1.534729 GAAAACTGTTGCGATCCCCT 58.465 50.000 0.00 0.00 0.00 4.79
3371 6145 0.168128 CGAAAACTGTTGCGATCCCC 59.832 55.000 9.57 0.00 38.11 4.81
3372 6146 1.153353 TCGAAAACTGTTGCGATCCC 58.847 50.000 12.71 0.00 39.99 3.85
3377 6151 6.849305 ACTTTTACTTATCGAAAACTGTTGCG 59.151 34.615 9.05 9.05 37.10 4.85
3378 6152 7.642586 ACACTTTTACTTATCGAAAACTGTTGC 59.357 33.333 0.00 0.00 0.00 4.17
3379 6153 9.155053 GACACTTTTACTTATCGAAAACTGTTG 57.845 33.333 0.00 0.00 28.26 3.33
3380 6154 8.060090 CGACACTTTTACTTATCGAAAACTGTT 58.940 33.333 0.00 0.00 28.26 3.16
3381 6155 7.436080 TCGACACTTTTACTTATCGAAAACTGT 59.564 33.333 0.00 0.00 35.80 3.55
3382 6156 7.780313 TCGACACTTTTACTTATCGAAAACTG 58.220 34.615 0.00 0.00 35.80 3.16
3383 6157 7.935338 TCGACACTTTTACTTATCGAAAACT 57.065 32.000 0.00 0.00 35.80 2.66
3384 6158 7.528516 GGTTCGACACTTTTACTTATCGAAAAC 59.471 37.037 8.30 2.36 46.48 2.43
3385 6159 7.307337 GGGTTCGACACTTTTACTTATCGAAAA 60.307 37.037 8.30 0.00 46.48 2.29
3386 6160 6.146021 GGGTTCGACACTTTTACTTATCGAAA 59.854 38.462 8.30 0.00 46.48 3.46
3387 6161 5.634859 GGGTTCGACACTTTTACTTATCGAA 59.365 40.000 2.99 2.99 43.90 3.71
3388 6162 5.163513 GGGTTCGACACTTTTACTTATCGA 58.836 41.667 0.00 0.00 36.85 3.59
3389 6163 4.925054 TGGGTTCGACACTTTTACTTATCG 59.075 41.667 0.00 0.00 0.00 2.92
3390 6164 6.596703 GTTGGGTTCGACACTTTTACTTATC 58.403 40.000 0.00 0.00 0.00 1.75
3391 6165 5.178067 CGTTGGGTTCGACACTTTTACTTAT 59.822 40.000 0.00 0.00 0.00 1.73
3392 6166 4.507388 CGTTGGGTTCGACACTTTTACTTA 59.493 41.667 0.00 0.00 0.00 2.24
3393 6167 3.310501 CGTTGGGTTCGACACTTTTACTT 59.689 43.478 0.00 0.00 0.00 2.24
3394 6168 2.867975 CGTTGGGTTCGACACTTTTACT 59.132 45.455 0.00 0.00 0.00 2.24
3395 6169 2.865551 TCGTTGGGTTCGACACTTTTAC 59.134 45.455 0.00 0.00 32.30 2.01
3396 6170 3.125316 CTCGTTGGGTTCGACACTTTTA 58.875 45.455 0.00 0.00 33.71 1.52
3397 6171 1.937899 CTCGTTGGGTTCGACACTTTT 59.062 47.619 0.00 0.00 33.71 2.27
3398 6172 1.578583 CTCGTTGGGTTCGACACTTT 58.421 50.000 0.00 0.00 33.71 2.66
3399 6173 0.249741 CCTCGTTGGGTTCGACACTT 60.250 55.000 0.00 0.00 33.71 3.16
3400 6174 1.111116 TCCTCGTTGGGTTCGACACT 61.111 55.000 0.00 0.00 36.20 3.55
3401 6175 0.666577 CTCCTCGTTGGGTTCGACAC 60.667 60.000 0.00 0.00 36.20 3.67
3402 6176 1.663739 CTCCTCGTTGGGTTCGACA 59.336 57.895 0.00 0.00 36.20 4.35
3403 6177 1.737008 GCTCCTCGTTGGGTTCGAC 60.737 63.158 0.00 0.00 36.20 4.20
3404 6178 0.609957 TAGCTCCTCGTTGGGTTCGA 60.610 55.000 0.00 0.00 36.20 3.71
3405 6179 0.245539 TTAGCTCCTCGTTGGGTTCG 59.754 55.000 0.00 0.00 36.20 3.95
3406 6180 2.074576 GTTTAGCTCCTCGTTGGGTTC 58.925 52.381 0.00 0.00 36.20 3.62
3407 6181 1.607251 CGTTTAGCTCCTCGTTGGGTT 60.607 52.381 0.00 0.00 36.20 4.11
3408 6182 0.037605 CGTTTAGCTCCTCGTTGGGT 60.038 55.000 0.00 0.00 36.20 4.51
3409 6183 1.359459 GCGTTTAGCTCCTCGTTGGG 61.359 60.000 0.00 0.00 44.04 4.12
3410 6184 2.079049 GCGTTTAGCTCCTCGTTGG 58.921 57.895 0.00 0.00 44.04 3.77
3421 6195 6.093495 TGAGGGAATATTTGTTCTGCGTTTAG 59.907 38.462 0.00 0.00 0.00 1.85
3422 6196 5.941058 TGAGGGAATATTTGTTCTGCGTTTA 59.059 36.000 0.00 0.00 0.00 2.01
3423 6197 4.764823 TGAGGGAATATTTGTTCTGCGTTT 59.235 37.500 0.00 0.00 0.00 3.60
3424 6198 4.331968 TGAGGGAATATTTGTTCTGCGTT 58.668 39.130 0.00 0.00 0.00 4.84
3425 6199 3.950397 TGAGGGAATATTTGTTCTGCGT 58.050 40.909 0.00 0.00 0.00 5.24
3426 6200 4.396166 ACTTGAGGGAATATTTGTTCTGCG 59.604 41.667 0.00 0.00 0.00 5.18
3427 6201 5.904362 ACTTGAGGGAATATTTGTTCTGC 57.096 39.130 0.00 0.00 0.00 4.26
3428 6202 7.693969 AGAACTTGAGGGAATATTTGTTCTG 57.306 36.000 0.00 0.00 40.54 3.02
3429 6203 9.620259 GATAGAACTTGAGGGAATATTTGTTCT 57.380 33.333 0.00 0.00 43.21 3.01
3430 6204 8.552034 CGATAGAACTTGAGGGAATATTTGTTC 58.448 37.037 0.00 0.00 39.76 3.18
3431 6205 8.265055 TCGATAGAACTTGAGGGAATATTTGTT 58.735 33.333 0.00 0.00 46.15 2.83
3432 6206 7.792032 TCGATAGAACTTGAGGGAATATTTGT 58.208 34.615 0.00 0.00 46.15 2.83
3455 6229 2.538333 CGTAGAGTTGTATCGGTGGTCG 60.538 54.545 0.00 0.00 40.90 4.79
3456 6230 2.793933 GCGTAGAGTTGTATCGGTGGTC 60.794 54.545 0.00 0.00 0.00 4.02
3457 6231 1.133790 GCGTAGAGTTGTATCGGTGGT 59.866 52.381 0.00 0.00 0.00 4.16
3458 6232 1.133598 TGCGTAGAGTTGTATCGGTGG 59.866 52.381 0.00 0.00 0.00 4.61
3459 6233 2.182825 GTGCGTAGAGTTGTATCGGTG 58.817 52.381 0.00 0.00 0.00 4.94
3460 6234 1.202110 CGTGCGTAGAGTTGTATCGGT 60.202 52.381 0.00 0.00 0.00 4.69
3461 6235 1.463805 CGTGCGTAGAGTTGTATCGG 58.536 55.000 0.00 0.00 0.00 4.18
3462 6236 0.838229 GCGTGCGTAGAGTTGTATCG 59.162 55.000 0.00 0.00 0.00 2.92
3463 6237 2.190325 AGCGTGCGTAGAGTTGTATC 57.810 50.000 0.00 0.00 0.00 2.24
3464 6238 2.094906 TCAAGCGTGCGTAGAGTTGTAT 60.095 45.455 0.00 0.00 0.00 2.29
3465 6239 1.267533 TCAAGCGTGCGTAGAGTTGTA 59.732 47.619 0.00 0.00 0.00 2.41
3466 6240 0.031585 TCAAGCGTGCGTAGAGTTGT 59.968 50.000 0.00 0.00 0.00 3.32
3467 6241 1.059692 CATCAAGCGTGCGTAGAGTTG 59.940 52.381 0.00 0.00 0.00 3.16
3468 6242 1.336887 ACATCAAGCGTGCGTAGAGTT 60.337 47.619 0.00 0.00 0.00 3.01
3469 6243 0.243907 ACATCAAGCGTGCGTAGAGT 59.756 50.000 0.00 0.00 0.00 3.24
3470 6244 1.321743 GAACATCAAGCGTGCGTAGAG 59.678 52.381 0.00 0.00 0.00 2.43
3471 6245 1.346365 GAACATCAAGCGTGCGTAGA 58.654 50.000 0.00 0.00 0.00 2.59
3472 6246 0.023732 CGAACATCAAGCGTGCGTAG 59.976 55.000 0.00 0.00 30.44 3.51
3473 6247 1.951181 GCGAACATCAAGCGTGCGTA 61.951 55.000 0.00 0.00 37.74 4.42
3474 6248 2.853210 CGAACATCAAGCGTGCGT 59.147 55.556 0.00 0.00 30.44 5.24
3475 6249 2.498761 AAGCGAACATCAAGCGTGCG 62.499 55.000 0.00 0.00 38.50 5.34
3476 6250 0.385974 AAAGCGAACATCAAGCGTGC 60.386 50.000 0.00 0.00 35.78 5.34
3477 6251 2.495939 GTAAAGCGAACATCAAGCGTG 58.504 47.619 0.00 0.00 35.78 5.34
3478 6252 1.463444 GGTAAAGCGAACATCAAGCGT 59.537 47.619 0.00 0.00 35.78 5.07
3479 6253 1.732259 AGGTAAAGCGAACATCAAGCG 59.268 47.619 0.00 0.00 35.78 4.68
3480 6254 4.181578 TCTAGGTAAAGCGAACATCAAGC 58.818 43.478 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.