Multiple sequence alignment - TraesCS1A01G259500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G259500 chr1A 100.000 5333 0 0 1 5333 452752572 452757904 0.000000e+00 9849
1 TraesCS1A01G259500 chr1A 94.452 739 40 1 1003 1741 452743938 452744675 0.000000e+00 1136
2 TraesCS1A01G259500 chr1A 93.590 78 5 0 844 921 452743845 452743922 3.370000e-22 117
3 TraesCS1A01G259500 chr1D 95.227 3981 134 17 694 4635 352191127 352195090 0.000000e+00 6248
4 TraesCS1A01G259500 chr1D 91.021 568 46 4 1 563 40245749 40246316 0.000000e+00 761
5 TraesCS1A01G259500 chr1D 90.845 568 47 3 1 563 40327090 40327657 0.000000e+00 756
6 TraesCS1A01G259500 chr1D 90.669 568 48 3 1 563 40382094 40382661 0.000000e+00 750
7 TraesCS1A01G259500 chr1B 95.251 3727 139 8 697 4394 474444750 474448467 0.000000e+00 5867
8 TraesCS1A01G259500 chr1B 80.566 813 73 35 4493 5285 474448626 474449373 1.010000e-151 547
9 TraesCS1A01G259500 chr6D 91.373 568 43 4 1 563 53679112 53679678 0.000000e+00 773
10 TraesCS1A01G259500 chr6D 90.141 568 51 4 1 563 27996801 27996234 0.000000e+00 734
11 TraesCS1A01G259500 chr7A 89.789 568 53 4 1 563 92459460 92460027 0.000000e+00 723
12 TraesCS1A01G259500 chr2B 89.594 567 52 6 1 563 30452225 30451662 0.000000e+00 713
13 TraesCS1A01G259500 chr2A 89.437 568 55 4 1 563 710350377 710350944 0.000000e+00 712
14 TraesCS1A01G259500 chr2A 80.615 325 24 15 4850 5157 38316296 38315994 1.160000e-51 215
15 TraesCS1A01G259500 chr4B 88.732 568 58 5 1 563 98479867 98480433 0.000000e+00 689


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G259500 chr1A 452752572 452757904 5332 False 9849.0 9849 100.0000 1 5333 1 chr1A.!!$F1 5332
1 TraesCS1A01G259500 chr1A 452743845 452744675 830 False 626.5 1136 94.0210 844 1741 2 chr1A.!!$F2 897
2 TraesCS1A01G259500 chr1D 352191127 352195090 3963 False 6248.0 6248 95.2270 694 4635 1 chr1D.!!$F4 3941
3 TraesCS1A01G259500 chr1D 40245749 40246316 567 False 761.0 761 91.0210 1 563 1 chr1D.!!$F1 562
4 TraesCS1A01G259500 chr1D 40327090 40327657 567 False 756.0 756 90.8450 1 563 1 chr1D.!!$F2 562
5 TraesCS1A01G259500 chr1D 40382094 40382661 567 False 750.0 750 90.6690 1 563 1 chr1D.!!$F3 562
6 TraesCS1A01G259500 chr1B 474444750 474449373 4623 False 3207.0 5867 87.9085 697 5285 2 chr1B.!!$F1 4588
7 TraesCS1A01G259500 chr6D 53679112 53679678 566 False 773.0 773 91.3730 1 563 1 chr6D.!!$F1 562
8 TraesCS1A01G259500 chr6D 27996234 27996801 567 True 734.0 734 90.1410 1 563 1 chr6D.!!$R1 562
9 TraesCS1A01G259500 chr7A 92459460 92460027 567 False 723.0 723 89.7890 1 563 1 chr7A.!!$F1 562
10 TraesCS1A01G259500 chr2B 30451662 30452225 563 True 713.0 713 89.5940 1 563 1 chr2B.!!$R1 562
11 TraesCS1A01G259500 chr2A 710350377 710350944 567 False 712.0 712 89.4370 1 563 1 chr2A.!!$F1 562
12 TraesCS1A01G259500 chr4B 98479867 98480433 566 False 689.0 689 88.7320 1 563 1 chr4B.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 476 0.107897 CGGACCGATGATCACCCAAA 60.108 55.0 8.64 0.00 0.00 3.28 F
667 672 0.110192 CCCTTTTCTCGCGAAACAGC 60.110 55.0 11.33 0.00 38.77 4.40 F
688 693 0.455464 GTTATTTTGTGGGTCCGCGC 60.455 55.0 0.00 0.00 0.00 6.86 F
2375 2429 0.464373 GATTTCATCCGGCCAGCTGA 60.464 55.0 17.39 0.00 0.00 4.26 F
2376 2430 0.034186 ATTTCATCCGGCCAGCTGAA 60.034 50.0 17.39 1.53 0.00 3.02 F
2377 2431 0.677731 TTTCATCCGGCCAGCTGAAG 60.678 55.0 17.39 5.65 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2076 0.037326 TGAACAGCGACCAGACATCC 60.037 55.000 0.00 0.00 0.00 3.51 R
2085 2139 0.108945 GCTCTCCAATTGCCTGCAAC 60.109 55.000 6.72 0.00 38.88 4.17 R
2377 2431 0.620556 TCCAGTTTCCTCCCATCAGC 59.379 55.000 0.00 0.00 0.00 4.26 R
4008 4062 0.179282 GTCGAATGTGCAACGTCGTC 60.179 55.000 12.28 5.25 44.36 4.20 R
4090 4144 1.129437 GAGCTTGGAGCAATTGTCGAC 59.871 52.381 9.11 9.11 45.56 4.20 R
4376 4430 0.806884 TTGAACGGCGACAACGAACT 60.807 50.000 16.62 0.00 42.66 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 171 1.153745 GAGAGCCATGCTTCGTCGT 60.154 57.895 0.00 0.00 39.88 4.34
177 178 0.179100 CATGCTTCGTCGTCTCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
243 244 1.758514 GCCCTCTCGTCCTGGATCA 60.759 63.158 0.00 0.00 0.00 2.92
265 266 1.080093 GACGTCGACCCATCAGCAA 60.080 57.895 10.58 0.00 0.00 3.91
289 291 2.113774 CAGCTCACCCCAAGCACA 59.886 61.111 0.00 0.00 42.35 4.57
292 294 2.263741 GCTCACCCCAAGCACACTG 61.264 63.158 0.00 0.00 39.61 3.66
294 296 2.055689 CTCACCCCAAGCACACTGGA 62.056 60.000 0.00 0.00 0.00 3.86
298 300 1.152777 CCCAAGCACACTGGAACCA 60.153 57.895 0.00 0.00 0.00 3.67
299 301 0.754957 CCCAAGCACACTGGAACCAA 60.755 55.000 0.00 0.00 0.00 3.67
345 350 2.716017 CCTGGCGACCTCACCTCTC 61.716 68.421 0.00 0.00 0.00 3.20
346 351 2.680352 TGGCGACCTCACCTCTCC 60.680 66.667 0.00 0.00 0.00 3.71
371 376 1.153249 CCCATACATCGCCACCGTT 60.153 57.895 0.00 0.00 35.54 4.44
373 378 1.091537 CCATACATCGCCACCGTTTT 58.908 50.000 0.00 0.00 35.54 2.43
430 435 3.628032 GCATGAACCCTACTAAAGAAGCC 59.372 47.826 0.00 0.00 0.00 4.35
438 443 2.180432 ACTAAAGAAGCCGACCAACC 57.820 50.000 0.00 0.00 0.00 3.77
442 447 1.789576 AAGAAGCCGACCAACCCCAT 61.790 55.000 0.00 0.00 0.00 4.00
453 458 1.685421 AACCCCATGCCAAATCCCG 60.685 57.895 0.00 0.00 0.00 5.14
459 464 2.675242 ATGCCAAATCCCGGACCGA 61.675 57.895 17.49 0.00 0.00 4.69
471 476 0.107897 CGGACCGATGATCACCCAAA 60.108 55.000 8.64 0.00 0.00 3.28
485 490 0.382515 CCCAAAACGACGCCTTCAAA 59.617 50.000 0.00 0.00 0.00 2.69
494 499 4.309099 ACGACGCCTTCAAAAAGTACATA 58.691 39.130 0.00 0.00 0.00 2.29
530 535 1.072159 CCGCCCCAATCCAGAGATC 59.928 63.158 0.00 0.00 0.00 2.75
536 541 1.620819 CCCAATCCAGAGATCGTAGGG 59.379 57.143 0.00 0.00 0.00 3.53
541 546 3.095912 TCCAGAGATCGTAGGGTTTCA 57.904 47.619 1.41 0.00 0.00 2.69
543 548 2.479730 CCAGAGATCGTAGGGTTTCACG 60.480 54.545 0.00 0.00 39.48 4.35
560 565 4.200283 GCGAGACCAGGAGGCGAG 62.200 72.222 0.00 0.00 39.06 5.03
563 568 3.663815 GAGACCAGGAGGCGAGGGA 62.664 68.421 0.00 0.00 39.06 4.20
564 569 3.462678 GACCAGGAGGCGAGGGAC 61.463 72.222 0.00 0.00 39.06 4.46
565 570 4.316823 ACCAGGAGGCGAGGGACA 62.317 66.667 0.00 0.00 39.06 4.02
566 571 3.003173 CCAGGAGGCGAGGGACAA 61.003 66.667 0.00 0.00 0.00 3.18
567 572 2.266055 CAGGAGGCGAGGGACAAC 59.734 66.667 0.00 0.00 0.00 3.32
568 573 3.382832 AGGAGGCGAGGGACAACG 61.383 66.667 0.00 0.00 0.00 4.10
569 574 4.452733 GGAGGCGAGGGACAACGG 62.453 72.222 0.00 0.00 0.00 4.44
575 580 3.723348 GAGGGACAACGGCGCAAC 61.723 66.667 10.83 0.00 0.00 4.17
596 601 2.553770 CGTTGCCAACATCGCGAA 59.446 55.556 15.24 0.00 32.73 4.70
597 602 1.134487 CGTTGCCAACATCGCGAAT 59.866 52.632 15.24 0.36 32.73 3.34
598 603 0.454285 CGTTGCCAACATCGCGAATT 60.454 50.000 15.24 8.21 32.73 2.17
599 604 1.696988 GTTGCCAACATCGCGAATTT 58.303 45.000 15.24 6.28 0.00 1.82
600 605 2.058057 GTTGCCAACATCGCGAATTTT 58.942 42.857 15.24 3.28 0.00 1.82
601 606 2.430546 TGCCAACATCGCGAATTTTT 57.569 40.000 15.24 0.34 0.00 1.94
622 627 5.473796 TTTTAAGGATCGGACGCATTTAC 57.526 39.130 0.00 0.00 0.00 2.01
623 628 1.567504 AAGGATCGGACGCATTTACG 58.432 50.000 0.00 0.00 39.50 3.18
624 629 0.742505 AGGATCGGACGCATTTACGA 59.257 50.000 0.00 0.00 39.85 3.43
626 631 1.455786 GGATCGGACGCATTTACGATG 59.544 52.381 2.97 0.00 44.99 3.84
627 632 2.124903 GATCGGACGCATTTACGATGT 58.875 47.619 2.97 0.00 44.99 3.06
628 633 1.552226 TCGGACGCATTTACGATGTC 58.448 50.000 0.00 0.00 36.70 3.06
629 634 1.135344 TCGGACGCATTTACGATGTCA 60.135 47.619 0.00 0.00 36.70 3.58
630 635 1.858458 CGGACGCATTTACGATGTCAT 59.142 47.619 0.00 0.00 36.70 3.06
631 636 2.097396 CGGACGCATTTACGATGTCATC 60.097 50.000 2.43 2.43 36.70 2.92
632 637 2.221055 GGACGCATTTACGATGTCATCC 59.779 50.000 7.25 0.00 36.70 3.51
633 638 2.210116 ACGCATTTACGATGTCATCCC 58.790 47.619 7.25 0.00 36.70 3.85
634 639 2.158957 ACGCATTTACGATGTCATCCCT 60.159 45.455 7.25 0.00 36.70 4.20
635 640 2.221749 CGCATTTACGATGTCATCCCTG 59.778 50.000 7.25 0.00 34.06 4.45
636 641 3.206150 GCATTTACGATGTCATCCCTGT 58.794 45.455 7.25 2.57 0.00 4.00
637 642 3.627577 GCATTTACGATGTCATCCCTGTT 59.372 43.478 7.25 0.00 0.00 3.16
638 643 4.260784 GCATTTACGATGTCATCCCTGTTC 60.261 45.833 7.25 0.00 0.00 3.18
639 644 2.863401 TACGATGTCATCCCTGTTCG 57.137 50.000 7.25 0.00 0.00 3.95
640 645 0.895530 ACGATGTCATCCCTGTTCGT 59.104 50.000 7.25 0.00 35.23 3.85
641 646 1.280982 CGATGTCATCCCTGTTCGTG 58.719 55.000 7.25 0.00 0.00 4.35
642 647 1.656652 GATGTCATCCCTGTTCGTGG 58.343 55.000 0.90 0.00 0.00 4.94
643 648 0.984230 ATGTCATCCCTGTTCGTGGT 59.016 50.000 0.00 0.00 0.00 4.16
644 649 1.634960 TGTCATCCCTGTTCGTGGTA 58.365 50.000 0.00 0.00 0.00 3.25
645 650 1.548719 TGTCATCCCTGTTCGTGGTAG 59.451 52.381 0.00 0.00 0.00 3.18
646 651 1.549170 GTCATCCCTGTTCGTGGTAGT 59.451 52.381 0.00 0.00 0.00 2.73
647 652 2.756760 GTCATCCCTGTTCGTGGTAGTA 59.243 50.000 0.00 0.00 0.00 1.82
648 653 2.756760 TCATCCCTGTTCGTGGTAGTAC 59.243 50.000 0.00 0.00 0.00 2.73
649 654 1.549203 TCCCTGTTCGTGGTAGTACC 58.451 55.000 12.80 12.80 39.22 3.34
650 655 0.533951 CCCTGTTCGTGGTAGTACCC 59.466 60.000 16.91 7.24 37.50 3.69
651 656 1.553706 CCTGTTCGTGGTAGTACCCT 58.446 55.000 16.91 0.00 37.50 4.34
652 657 1.897802 CCTGTTCGTGGTAGTACCCTT 59.102 52.381 16.91 0.00 37.50 3.95
653 658 2.301009 CCTGTTCGTGGTAGTACCCTTT 59.699 50.000 16.91 0.00 37.50 3.11
654 659 3.244318 CCTGTTCGTGGTAGTACCCTTTT 60.244 47.826 16.91 0.00 37.50 2.27
655 660 3.992427 CTGTTCGTGGTAGTACCCTTTTC 59.008 47.826 16.91 5.59 37.50 2.29
656 661 3.642848 TGTTCGTGGTAGTACCCTTTTCT 59.357 43.478 16.91 0.00 37.50 2.52
657 662 4.240888 GTTCGTGGTAGTACCCTTTTCTC 58.759 47.826 16.91 0.00 37.50 2.87
658 663 2.489329 TCGTGGTAGTACCCTTTTCTCG 59.511 50.000 16.91 9.58 37.50 4.04
659 664 2.614779 GTGGTAGTACCCTTTTCTCGC 58.385 52.381 16.91 0.00 37.50 5.03
660 665 1.203052 TGGTAGTACCCTTTTCTCGCG 59.797 52.381 16.91 0.00 37.50 5.87
661 666 1.474077 GGTAGTACCCTTTTCTCGCGA 59.526 52.381 9.26 9.26 30.04 5.87
662 667 2.094545 GGTAGTACCCTTTTCTCGCGAA 60.095 50.000 11.33 0.00 30.04 4.70
663 668 2.825861 AGTACCCTTTTCTCGCGAAA 57.174 45.000 11.33 4.88 37.36 3.46
664 669 2.410939 AGTACCCTTTTCTCGCGAAAC 58.589 47.619 11.33 0.00 38.77 2.78
665 670 2.137523 GTACCCTTTTCTCGCGAAACA 58.862 47.619 11.33 0.10 38.77 2.83
666 671 1.226746 ACCCTTTTCTCGCGAAACAG 58.773 50.000 11.33 9.80 38.77 3.16
667 672 0.110192 CCCTTTTCTCGCGAAACAGC 60.110 55.000 11.33 0.00 38.77 4.40
668 673 0.586319 CCTTTTCTCGCGAAACAGCA 59.414 50.000 11.33 0.00 38.77 4.41
669 674 1.398960 CCTTTTCTCGCGAAACAGCAG 60.399 52.381 11.33 1.43 38.77 4.24
670 675 1.261619 CTTTTCTCGCGAAACAGCAGT 59.738 47.619 11.33 0.00 38.77 4.40
671 676 1.295792 TTTCTCGCGAAACAGCAGTT 58.704 45.000 11.33 0.00 40.40 3.16
672 677 2.143008 TTCTCGCGAAACAGCAGTTA 57.857 45.000 11.33 0.00 36.84 2.24
673 678 2.363788 TCTCGCGAAACAGCAGTTAT 57.636 45.000 11.33 0.00 36.84 1.89
674 679 2.683968 TCTCGCGAAACAGCAGTTATT 58.316 42.857 11.33 0.00 36.84 1.40
675 680 3.064207 TCTCGCGAAACAGCAGTTATTT 58.936 40.909 11.33 0.00 36.84 1.40
676 681 3.496884 TCTCGCGAAACAGCAGTTATTTT 59.503 39.130 11.33 0.00 36.84 1.82
677 682 3.550561 TCGCGAAACAGCAGTTATTTTG 58.449 40.909 6.20 0.00 36.84 2.44
678 683 3.002862 TCGCGAAACAGCAGTTATTTTGT 59.997 39.130 6.20 0.00 36.84 2.83
679 684 3.117832 CGCGAAACAGCAGTTATTTTGTG 59.882 43.478 0.00 0.00 36.84 3.33
680 685 3.425193 GCGAAACAGCAGTTATTTTGTGG 59.575 43.478 0.00 0.00 36.84 4.17
681 686 3.980775 CGAAACAGCAGTTATTTTGTGGG 59.019 43.478 0.00 0.00 36.84 4.61
682 687 4.499019 CGAAACAGCAGTTATTTTGTGGGT 60.499 41.667 0.00 0.00 36.84 4.51
683 688 4.584327 AACAGCAGTTATTTTGTGGGTC 57.416 40.909 0.00 0.00 35.85 4.46
684 689 2.890945 ACAGCAGTTATTTTGTGGGTCC 59.109 45.455 0.00 0.00 0.00 4.46
685 690 2.095263 CAGCAGTTATTTTGTGGGTCCG 60.095 50.000 0.00 0.00 0.00 4.79
686 691 1.402325 GCAGTTATTTTGTGGGTCCGC 60.402 52.381 0.00 0.00 0.00 5.54
687 692 1.135803 CAGTTATTTTGTGGGTCCGCG 60.136 52.381 0.00 0.00 0.00 6.46
688 693 0.455464 GTTATTTTGTGGGTCCGCGC 60.455 55.000 0.00 0.00 0.00 6.86
689 694 1.587933 TTATTTTGTGGGTCCGCGCC 61.588 55.000 0.00 0.00 0.00 6.53
690 695 2.749706 TATTTTGTGGGTCCGCGCCA 62.750 55.000 0.00 0.00 0.00 5.69
691 696 4.652131 TTTGTGGGTCCGCGCCAT 62.652 61.111 7.22 0.00 0.00 4.40
702 707 2.590092 GCGCCATGTAAGGGTCCT 59.410 61.111 0.00 0.00 42.11 3.85
868 875 1.519751 CCCGAAAACCACATGGCGAA 61.520 55.000 0.00 0.00 39.32 4.70
1326 1380 3.996124 AAGCAGCTCGTCGGCACT 61.996 61.111 0.00 2.99 38.40 4.40
1677 1731 2.139917 CACGACGATTTGGTGAAGGAA 58.860 47.619 0.00 0.00 33.58 3.36
1714 1768 2.075566 TGGGTGTGTCCTTCTGCCA 61.076 57.895 0.00 0.00 36.25 4.92
1778 1832 2.637872 CTGGGGTAGAAGTTCCTGACAA 59.362 50.000 0.00 0.00 0.00 3.18
1975 2029 5.221441 ACCAGGAAAAAGATTGTAGCAAACC 60.221 40.000 0.00 0.00 0.00 3.27
1998 2052 2.359230 AAGGCGAGCAAGCTGGTC 60.359 61.111 0.00 0.00 41.16 4.02
2019 2073 1.890510 GTTGGACGGACTGGCGTTT 60.891 57.895 0.00 0.00 0.00 3.60
2022 2076 4.072088 GACGGACTGGCGTTTGCG 62.072 66.667 0.00 0.00 44.10 4.85
2028 2082 2.240612 GACTGGCGTTTGCGGATGTC 62.241 60.000 0.00 0.00 44.10 3.06
2115 2169 1.597742 TTGGAGAGCAGCTTGTTCAC 58.402 50.000 0.00 0.00 29.40 3.18
2202 2256 4.183216 TCAGTCACTGGAAGAGGATCTCG 61.183 52.174 4.57 0.00 36.83 4.04
2355 2409 2.695147 GGTTAAGATTTGGATGGCCCTG 59.305 50.000 0.00 0.00 35.38 4.45
2373 2427 1.152881 GGATTTCATCCGGCCAGCT 60.153 57.895 2.24 0.00 40.13 4.24
2374 2428 1.450531 GGATTTCATCCGGCCAGCTG 61.451 60.000 6.78 6.78 40.13 4.24
2375 2429 0.464373 GATTTCATCCGGCCAGCTGA 60.464 55.000 17.39 0.00 0.00 4.26
2376 2430 0.034186 ATTTCATCCGGCCAGCTGAA 60.034 50.000 17.39 1.53 0.00 3.02
2377 2431 0.677731 TTTCATCCGGCCAGCTGAAG 60.678 55.000 17.39 5.65 0.00 3.02
2378 2432 3.207669 CATCCGGCCAGCTGAAGC 61.208 66.667 17.39 11.17 42.49 3.86
2451 2505 1.635487 CAGGGGTCCTTCTTCCATGAA 59.365 52.381 0.00 0.00 34.65 2.57
2589 2643 2.159338 TCGTACAGTTCGGCACTTATCC 60.159 50.000 0.00 0.00 30.92 2.59
2793 2847 1.896220 TTGGTCAACTGATGCACCTC 58.104 50.000 0.00 0.00 33.17 3.85
2839 2893 3.788227 TTACAAGGCTTCCACAGTCAT 57.212 42.857 0.00 0.00 0.00 3.06
2891 2945 4.176752 CCCTAAGAGGTGCCGCCC 62.177 72.222 0.00 0.00 38.26 6.13
2938 2992 4.504097 GGAACTTGAAATATTTGCGCCATC 59.496 41.667 4.18 0.00 0.00 3.51
3315 3369 2.030805 GTGTTGGTTGGACATGAGCTTC 60.031 50.000 0.00 0.00 0.00 3.86
3338 3392 2.638363 AGTTGAAGGAGGGAAGTACACC 59.362 50.000 0.00 0.00 0.00 4.16
3454 3508 3.591196 AAGAGATGTGCTCACTGAGAC 57.409 47.619 10.45 6.06 46.45 3.36
3534 3588 6.802608 ACTTGAATTTGATGATATGCCACAG 58.197 36.000 0.00 0.00 0.00 3.66
3562 3616 2.037772 GAGTGGACCAAAGAAGAGAGCA 59.962 50.000 0.00 0.00 0.00 4.26
3581 3635 3.007182 AGCATGACCAATGTTTTTCCCAG 59.993 43.478 0.00 0.00 38.65 4.45
3748 3802 3.809279 TGTTGCACTAGAGACATGTTGTG 59.191 43.478 0.00 6.21 0.00 3.33
3768 3822 2.849943 TGCCACCATCCTTACAATAGGT 59.150 45.455 0.00 0.00 36.63 3.08
3798 3852 1.518903 GGCAACAGGTGGAAGCAGTC 61.519 60.000 0.00 0.00 30.92 3.51
3856 3910 2.024176 TGAGGACCTTCAGGCACTTA 57.976 50.000 0.00 0.00 34.60 2.24
3936 3990 2.756829 TGTTTGCGAGGTTTACGATCA 58.243 42.857 0.00 0.00 0.00 2.92
3939 3993 2.273370 TGCGAGGTTTACGATCACTC 57.727 50.000 0.00 0.00 0.00 3.51
3990 4044 6.349611 GCAACATAACATCTCTTCCACATGTT 60.350 38.462 0.00 0.00 42.20 2.71
4008 4062 1.656095 GTTGAGAGTTCGAGCGGATTG 59.344 52.381 0.00 0.00 0.00 2.67
4060 4114 1.280133 TGTCCTCTCTGCATTCCTTGG 59.720 52.381 0.00 0.00 0.00 3.61
4090 4144 0.957395 AGCACTGGAAAGCATGTCGG 60.957 55.000 0.00 0.00 0.00 4.79
4139 4193 0.984230 TCTTTCCCTGCCGACTTCAT 59.016 50.000 0.00 0.00 0.00 2.57
4202 4256 2.669569 GCTGGAGTCGCTGCCAAA 60.670 61.111 0.00 0.00 32.95 3.28
4243 4297 3.760684 GCAAGTTCTTGATCTGATTGGGT 59.239 43.478 15.52 0.00 0.00 4.51
4376 4430 2.900716 TCCGATGCCGTTATCATTCA 57.099 45.000 0.00 0.00 0.00 2.57
4377 4431 2.754472 TCCGATGCCGTTATCATTCAG 58.246 47.619 0.00 0.00 0.00 3.02
4378 4432 2.102420 TCCGATGCCGTTATCATTCAGT 59.898 45.455 0.00 0.00 0.00 3.41
4380 4434 3.059597 CCGATGCCGTTATCATTCAGTTC 60.060 47.826 0.00 0.00 0.00 3.01
4381 4435 3.362014 CGATGCCGTTATCATTCAGTTCG 60.362 47.826 0.00 0.00 0.00 3.95
4382 4436 2.967362 TGCCGTTATCATTCAGTTCGT 58.033 42.857 0.00 0.00 0.00 3.85
4383 4437 3.331150 TGCCGTTATCATTCAGTTCGTT 58.669 40.909 0.00 0.00 0.00 3.85
4403 4457 1.302112 TCGCCGTTCAAGAATGCCA 60.302 52.632 0.00 0.00 0.00 4.92
4424 4478 5.009410 GCCACCTTTCCTATGAAATGATCAG 59.991 44.000 0.09 0.00 42.53 2.90
4482 4536 1.806542 GTCGATGTCTGCCATTTGTGT 59.193 47.619 0.00 0.00 32.56 3.72
4512 4653 9.491675 AAATTCTAGTATGCAAGATGAGAGATG 57.508 33.333 0.00 0.00 0.00 2.90
4595 4744 6.642683 ACGTTCTGTATGTAACTAATGTGC 57.357 37.500 0.00 0.00 0.00 4.57
4598 4747 5.950544 TCTGTATGTAACTAATGTGCCCT 57.049 39.130 0.00 0.00 0.00 5.19
4624 4773 6.239217 TGGCTGATGTACATTCTCATTACT 57.761 37.500 10.30 0.00 0.00 2.24
4631 4780 9.809096 TGATGTACATTCTCATTACTCTTTCTC 57.191 33.333 10.30 0.00 0.00 2.87
4637 4786 9.434420 ACATTCTCATTACTCTTTCTCTTTCTG 57.566 33.333 0.00 0.00 0.00 3.02
4638 4787 9.434420 CATTCTCATTACTCTTTCTCTTTCTGT 57.566 33.333 0.00 0.00 0.00 3.41
4640 4789 9.838339 TTCTCATTACTCTTTCTCTTTCTGTTT 57.162 29.630 0.00 0.00 0.00 2.83
4642 4791 8.964476 TCATTACTCTTTCTCTTTCTGTTTGT 57.036 30.769 0.00 0.00 0.00 2.83
4645 4794 6.852858 ACTCTTTCTCTTTCTGTTTGTAGC 57.147 37.500 0.00 0.00 0.00 3.58
4647 4796 5.930135 TCTTTCTCTTTCTGTTTGTAGCCT 58.070 37.500 0.00 0.00 0.00 4.58
4649 4798 6.260936 TCTTTCTCTTTCTGTTTGTAGCCTTG 59.739 38.462 0.00 0.00 0.00 3.61
4650 4799 3.815401 TCTCTTTCTGTTTGTAGCCTTGC 59.185 43.478 0.00 0.00 0.00 4.01
4651 4800 3.817647 CTCTTTCTGTTTGTAGCCTTGCT 59.182 43.478 0.00 0.00 43.41 3.91
4652 4801 3.565482 TCTTTCTGTTTGTAGCCTTGCTG 59.435 43.478 0.00 0.00 40.10 4.41
4654 4803 0.110056 CTGTTTGTAGCCTTGCTGCG 60.110 55.000 0.00 0.00 43.95 5.18
4655 4804 0.533978 TGTTTGTAGCCTTGCTGCGA 60.534 50.000 0.00 0.00 43.95 5.10
4656 4805 0.804989 GTTTGTAGCCTTGCTGCGAT 59.195 50.000 0.00 0.00 43.95 4.58
4657 4806 1.200020 GTTTGTAGCCTTGCTGCGATT 59.800 47.619 0.00 0.00 43.95 3.34
4658 4807 0.804364 TTGTAGCCTTGCTGCGATTG 59.196 50.000 0.00 0.00 43.95 2.67
4659 4808 0.036483 TGTAGCCTTGCTGCGATTGA 60.036 50.000 0.00 0.00 43.95 2.57
4660 4809 0.375106 GTAGCCTTGCTGCGATTGAC 59.625 55.000 0.00 0.00 40.10 3.18
4663 4812 1.300971 GCCTTGCTGCGATTGACTGA 61.301 55.000 0.00 0.00 0.00 3.41
4664 4813 0.725686 CCTTGCTGCGATTGACTGAG 59.274 55.000 0.00 0.00 0.00 3.35
4665 4814 0.096628 CTTGCTGCGATTGACTGAGC 59.903 55.000 0.00 0.00 0.00 4.26
4666 4815 0.321034 TTGCTGCGATTGACTGAGCT 60.321 50.000 0.00 0.00 0.00 4.09
4667 4816 1.017701 TGCTGCGATTGACTGAGCTG 61.018 55.000 0.00 0.00 0.00 4.24
4668 4817 1.018226 GCTGCGATTGACTGAGCTGT 61.018 55.000 0.00 0.00 0.00 4.40
4669 4818 1.436600 CTGCGATTGACTGAGCTGTT 58.563 50.000 0.00 0.00 0.00 3.16
4670 4819 2.610433 CTGCGATTGACTGAGCTGTTA 58.390 47.619 0.00 0.00 0.00 2.41
4672 4821 2.736721 TGCGATTGACTGAGCTGTTAAC 59.263 45.455 0.00 0.00 0.00 2.01
4673 4822 2.736721 GCGATTGACTGAGCTGTTAACA 59.263 45.455 8.28 8.28 0.00 2.41
4676 4825 5.617751 GCGATTGACTGAGCTGTTAACAAAT 60.618 40.000 10.03 3.81 0.00 2.32
4677 4826 5.791974 CGATTGACTGAGCTGTTAACAAATG 59.208 40.000 10.03 0.00 0.00 2.32
4678 4827 6.566564 CGATTGACTGAGCTGTTAACAAATGT 60.567 38.462 10.03 4.67 0.00 2.71
4679 4828 7.360017 CGATTGACTGAGCTGTTAACAAATGTA 60.360 37.037 10.03 0.00 0.00 2.29
4680 4829 7.561021 TTGACTGAGCTGTTAACAAATGTAA 57.439 32.000 10.03 0.00 0.00 2.41
4682 4831 7.806690 TGACTGAGCTGTTAACAAATGTAATC 58.193 34.615 10.03 3.54 0.00 1.75
4683 4832 7.443879 TGACTGAGCTGTTAACAAATGTAATCA 59.556 33.333 10.03 5.94 0.00 2.57
4684 4833 7.584987 ACTGAGCTGTTAACAAATGTAATCAC 58.415 34.615 10.03 0.00 0.00 3.06
4685 4834 7.445402 ACTGAGCTGTTAACAAATGTAATCACT 59.555 33.333 10.03 0.00 0.00 3.41
4686 4835 8.840833 TGAGCTGTTAACAAATGTAATCACTA 57.159 30.769 10.03 0.00 0.00 2.74
4687 4836 8.935844 TGAGCTGTTAACAAATGTAATCACTAG 58.064 33.333 10.03 0.00 0.00 2.57
4688 4837 7.752695 AGCTGTTAACAAATGTAATCACTAGC 58.247 34.615 10.03 4.34 0.00 3.42
4689 4838 7.607991 AGCTGTTAACAAATGTAATCACTAGCT 59.392 33.333 10.03 6.58 0.00 3.32
4690 4839 8.879759 GCTGTTAACAAATGTAATCACTAGCTA 58.120 33.333 10.03 0.00 0.00 3.32
4697 4846 9.461312 ACAAATGTAATCACTAGCTAAATTGGA 57.539 29.630 0.00 0.00 0.00 3.53
4700 4849 7.946655 TGTAATCACTAGCTAAATTGGATCG 57.053 36.000 0.00 0.00 0.00 3.69
4701 4850 6.929049 TGTAATCACTAGCTAAATTGGATCGG 59.071 38.462 0.00 0.00 0.00 4.18
4702 4851 5.552870 ATCACTAGCTAAATTGGATCGGT 57.447 39.130 0.00 0.00 0.00 4.69
4703 4852 4.693283 TCACTAGCTAAATTGGATCGGTG 58.307 43.478 0.00 0.00 0.00 4.94
4704 4853 4.161565 TCACTAGCTAAATTGGATCGGTGT 59.838 41.667 0.00 0.00 0.00 4.16
4705 4854 4.876107 CACTAGCTAAATTGGATCGGTGTT 59.124 41.667 0.00 0.00 0.00 3.32
4706 4855 6.046593 CACTAGCTAAATTGGATCGGTGTTA 58.953 40.000 0.00 0.00 0.00 2.41
4707 4856 6.706270 CACTAGCTAAATTGGATCGGTGTTAT 59.294 38.462 0.00 0.00 0.00 1.89
4708 4857 7.226720 CACTAGCTAAATTGGATCGGTGTTATT 59.773 37.037 0.00 0.00 0.00 1.40
4709 4858 7.773690 ACTAGCTAAATTGGATCGGTGTTATTT 59.226 33.333 0.00 0.00 0.00 1.40
4710 4859 7.027778 AGCTAAATTGGATCGGTGTTATTTC 57.972 36.000 0.00 0.00 0.00 2.17
4715 4864 8.757164 AAATTGGATCGGTGTTATTTCTTTTC 57.243 30.769 0.00 0.00 0.00 2.29
4724 4873 5.974751 GGTGTTATTTCTTTTCGTTGCTTCA 59.025 36.000 0.00 0.00 0.00 3.02
4726 4875 7.327378 GTGTTATTTCTTTTCGTTGCTTCAAC 58.673 34.615 0.00 0.00 40.54 3.18
4732 4881 3.414549 TTTCGTTGCTTCAACTTGTCC 57.585 42.857 7.91 0.00 41.62 4.02
4766 4917 8.973378 ACGTTGATTGGTAAATAACAAAATGTG 58.027 29.630 0.00 0.00 0.00 3.21
4768 4919 8.716909 GTTGATTGGTAAATAACAAAATGTGGG 58.283 33.333 0.00 0.00 0.00 4.61
4792 4943 3.684305 CAGATTTCAGTCCACAACGCATA 59.316 43.478 0.00 0.00 0.00 3.14
4808 4959 3.948851 CGCATACGTCACATGTACTACT 58.051 45.455 0.00 0.00 33.53 2.57
4809 4960 4.348656 CGCATACGTCACATGTACTACTT 58.651 43.478 0.00 0.00 33.53 2.24
4817 4968 8.997621 ACGTCACATGTACTACTTTTATCATT 57.002 30.769 0.00 0.00 0.00 2.57
4818 4969 8.869897 ACGTCACATGTACTACTTTTATCATTG 58.130 33.333 0.00 0.00 0.00 2.82
4864 5015 8.993121 TCTAGTCTGAATTCTGAAACATGTTTC 58.007 33.333 34.41 34.41 46.71 2.78
4906 5058 3.330701 AGGACCTTTGGATCAAGTGCTAA 59.669 43.478 0.00 0.00 0.00 3.09
4923 5075 4.396478 GTGCTAACTTGATCCTCCTTTTCC 59.604 45.833 0.00 0.00 0.00 3.13
4925 5077 4.637977 GCTAACTTGATCCTCCTTTTCCTG 59.362 45.833 0.00 0.00 0.00 3.86
4975 5131 5.079689 TCAATCACGGCATACTACAGAAA 57.920 39.130 0.00 0.00 0.00 2.52
4976 5132 4.868171 TCAATCACGGCATACTACAGAAAC 59.132 41.667 0.00 0.00 0.00 2.78
4977 5133 3.241067 TCACGGCATACTACAGAAACC 57.759 47.619 0.00 0.00 0.00 3.27
4978 5134 2.093869 TCACGGCATACTACAGAAACCC 60.094 50.000 0.00 0.00 0.00 4.11
4979 5135 2.093658 CACGGCATACTACAGAAACCCT 60.094 50.000 0.00 0.00 0.00 4.34
4980 5136 2.570302 ACGGCATACTACAGAAACCCTT 59.430 45.455 0.00 0.00 0.00 3.95
4981 5137 3.008704 ACGGCATACTACAGAAACCCTTT 59.991 43.478 0.00 0.00 0.00 3.11
4982 5138 4.007659 CGGCATACTACAGAAACCCTTTT 58.992 43.478 0.00 0.00 0.00 2.27
4983 5139 4.457949 CGGCATACTACAGAAACCCTTTTT 59.542 41.667 0.00 0.00 0.00 1.94
5006 5162 6.917217 TTTTTGCAAGTAACCAATTTCAGG 57.083 33.333 0.00 0.00 0.00 3.86
5011 5167 7.099266 TGCAAGTAACCAATTTCAGGATATG 57.901 36.000 0.00 0.00 0.00 1.78
5013 5169 7.560991 TGCAAGTAACCAATTTCAGGATATGAT 59.439 33.333 0.00 0.00 37.89 2.45
5019 5175 8.930846 AACCAATTTCAGGATATGATTAGGAG 57.069 34.615 0.00 0.00 37.89 3.69
5106 5271 4.442706 AGTTTCGAAAAGCTTGAGAGACA 58.557 39.130 13.10 1.32 0.00 3.41
5107 5272 4.271291 AGTTTCGAAAAGCTTGAGAGACAC 59.729 41.667 13.10 10.50 0.00 3.67
5120 5285 3.454447 TGAGAGACACCCACTTTTCTGAA 59.546 43.478 0.00 0.00 0.00 3.02
5123 5288 2.169769 AGACACCCACTTTTCTGAACGA 59.830 45.455 0.00 0.00 0.00 3.85
5134 5299 1.738099 CTGAACGAAGGGAGCACCG 60.738 63.158 0.00 0.00 46.96 4.94
5135 5300 3.119096 GAACGAAGGGAGCACCGC 61.119 66.667 0.00 0.00 46.96 5.68
5158 5323 3.270877 AGGTACCATTTCAGACATTCGC 58.729 45.455 15.94 0.00 0.00 4.70
5160 5325 0.447801 ACCATTTCAGACATTCGCGC 59.552 50.000 0.00 0.00 0.00 6.86
5168 5333 4.776795 TCAGACATTCGCGCCTTATATA 57.223 40.909 0.00 0.00 0.00 0.86
5169 5334 5.324784 TCAGACATTCGCGCCTTATATAT 57.675 39.130 0.00 0.00 0.00 0.86
5170 5335 5.720202 TCAGACATTCGCGCCTTATATATT 58.280 37.500 0.00 0.00 0.00 1.28
5202 5367 7.676004 TCTCAATAAAGGACAATACACACTCA 58.324 34.615 0.00 0.00 0.00 3.41
5205 5370 7.936847 TCAATAAAGGACAATACACACTCAGTT 59.063 33.333 0.00 0.00 0.00 3.16
5225 5391 9.482627 CTCAGTTTGTAAATCAAGAACTAGTCT 57.517 33.333 0.00 0.00 38.69 3.24
5286 5452 5.786401 AGAGAGAACAAATAACATGACGC 57.214 39.130 0.00 0.00 0.00 5.19
5287 5453 4.631813 AGAGAGAACAAATAACATGACGCC 59.368 41.667 0.00 0.00 0.00 5.68
5288 5454 4.579869 AGAGAACAAATAACATGACGCCT 58.420 39.130 0.00 0.00 0.00 5.52
5289 5455 5.730550 AGAGAACAAATAACATGACGCCTA 58.269 37.500 0.00 0.00 0.00 3.93
5290 5456 6.170506 AGAGAACAAATAACATGACGCCTAA 58.829 36.000 0.00 0.00 0.00 2.69
5291 5457 6.653320 AGAGAACAAATAACATGACGCCTAAA 59.347 34.615 0.00 0.00 0.00 1.85
5292 5458 6.842163 AGAACAAATAACATGACGCCTAAAG 58.158 36.000 0.00 0.00 0.00 1.85
5293 5459 6.430000 AGAACAAATAACATGACGCCTAAAGT 59.570 34.615 0.00 0.00 0.00 2.66
5294 5460 5.938322 ACAAATAACATGACGCCTAAAGTG 58.062 37.500 0.00 0.00 0.00 3.16
5295 5461 5.472137 ACAAATAACATGACGCCTAAAGTGT 59.528 36.000 0.00 0.00 43.60 3.55
5302 5468 2.457366 ACGCCTAAAGTGTCCTCAAG 57.543 50.000 0.00 0.00 32.22 3.02
5303 5469 1.002087 ACGCCTAAAGTGTCCTCAAGG 59.998 52.381 0.00 0.00 32.22 3.61
5304 5470 1.454201 GCCTAAAGTGTCCTCAAGGC 58.546 55.000 0.00 0.00 39.77 4.35
5305 5471 1.726853 CCTAAAGTGTCCTCAAGGCG 58.273 55.000 0.00 0.00 34.44 5.52
5306 5472 1.275291 CCTAAAGTGTCCTCAAGGCGA 59.725 52.381 0.00 0.00 34.44 5.54
5307 5473 2.338500 CTAAAGTGTCCTCAAGGCGAC 58.662 52.381 0.00 0.00 34.44 5.19
5308 5474 0.250338 AAAGTGTCCTCAAGGCGACC 60.250 55.000 0.00 0.00 34.44 4.79
5309 5475 1.407656 AAGTGTCCTCAAGGCGACCA 61.408 55.000 0.00 0.00 34.44 4.02
5310 5476 1.070786 GTGTCCTCAAGGCGACCAA 59.929 57.895 0.00 0.00 34.44 3.67
5311 5477 0.951040 GTGTCCTCAAGGCGACCAAG 60.951 60.000 0.00 0.00 34.44 3.61
5312 5478 1.376037 GTCCTCAAGGCGACCAAGG 60.376 63.158 0.00 0.00 34.44 3.61
5313 5479 2.045926 CCTCAAGGCGACCAAGGG 60.046 66.667 0.00 0.00 0.00 3.95
5314 5480 2.747855 CTCAAGGCGACCAAGGGC 60.748 66.667 0.00 0.00 0.00 5.19
5315 5481 3.551496 CTCAAGGCGACCAAGGGCA 62.551 63.158 0.00 0.00 0.00 5.36
5316 5482 3.365265 CAAGGCGACCAAGGGCAC 61.365 66.667 0.00 0.00 0.00 5.01
5330 5496 2.566824 GGCACCCTACACACCATTG 58.433 57.895 0.00 0.00 0.00 2.82
5331 5497 0.037590 GGCACCCTACACACCATTGA 59.962 55.000 0.00 0.00 0.00 2.57
5332 5498 1.340991 GGCACCCTACACACCATTGAT 60.341 52.381 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 0.896923 TATGTAACCGTCGTGGGCTT 59.103 50.000 1.73 0.00 44.64 4.35
170 171 3.083349 CCGAGTGGCCATGGGAGA 61.083 66.667 9.72 0.00 0.00 3.71
177 178 2.463589 GATGGTGAACCGAGTGGCCA 62.464 60.000 0.00 0.00 39.70 5.36
243 244 0.246635 CTGATGGGTCGACGTCCTTT 59.753 55.000 10.58 0.00 0.00 3.11
292 294 1.000843 GGCAACTGGTTCATTGGTTCC 59.999 52.381 0.00 0.00 0.00 3.62
294 296 0.673437 CGGCAACTGGTTCATTGGTT 59.327 50.000 0.00 0.00 0.00 3.67
298 300 1.347707 TCTCTCGGCAACTGGTTCATT 59.652 47.619 0.00 0.00 0.00 2.57
299 301 0.976641 TCTCTCGGCAACTGGTTCAT 59.023 50.000 0.00 0.00 0.00 2.57
345 350 1.676006 GGCGATGTATGGGTTTCTTGG 59.324 52.381 0.00 0.00 0.00 3.61
346 351 2.097466 GTGGCGATGTATGGGTTTCTTG 59.903 50.000 0.00 0.00 0.00 3.02
371 376 1.542547 GCTTCTGGGTCTTGACCGAAA 60.543 52.381 12.97 6.79 0.00 3.46
373 378 1.671742 GCTTCTGGGTCTTGACCGA 59.328 57.895 12.97 8.80 0.00 4.69
377 382 1.761174 GTGGGCTTCTGGGTCTTGA 59.239 57.895 0.00 0.00 0.00 3.02
430 435 1.257055 ATTTGGCATGGGGTTGGTCG 61.257 55.000 0.00 0.00 0.00 4.79
438 443 2.127232 GTCCGGGATTTGGCATGGG 61.127 63.158 0.00 0.00 0.00 4.00
442 447 2.675242 ATCGGTCCGGGATTTGGCA 61.675 57.895 12.29 0.00 0.00 4.92
453 458 1.743394 GTTTTGGGTGATCATCGGTCC 59.257 52.381 0.00 0.00 0.00 4.46
459 464 0.802494 GCGTCGTTTTGGGTGATCAT 59.198 50.000 0.00 0.00 0.00 2.45
471 476 2.937799 TGTACTTTTTGAAGGCGTCGTT 59.062 40.909 0.00 0.00 0.00 3.85
530 535 1.069378 GTCTCGCGTGAAACCCTACG 61.069 60.000 13.07 0.00 42.79 3.51
536 541 1.006571 TCCTGGTCTCGCGTGAAAC 60.007 57.895 13.07 9.55 0.00 2.78
543 548 4.200283 CTCGCCTCCTGGTCTCGC 62.200 72.222 0.00 0.00 35.27 5.03
579 584 0.454285 AATTCGCGATGTTGGCAACG 60.454 50.000 24.03 14.35 42.60 4.10
580 585 1.696988 AAATTCGCGATGTTGGCAAC 58.303 45.000 23.12 23.12 0.00 4.17
581 586 2.430546 AAAATTCGCGATGTTGGCAA 57.569 40.000 10.88 0.00 0.00 4.52
582 587 2.430546 AAAAATTCGCGATGTTGGCA 57.569 40.000 10.88 0.00 0.00 4.92
599 604 5.446206 CGTAAATGCGTCCGATCCTTAAAAA 60.446 40.000 0.00 0.00 0.00 1.94
600 605 4.033129 CGTAAATGCGTCCGATCCTTAAAA 59.967 41.667 0.00 0.00 0.00 1.52
601 606 3.552699 CGTAAATGCGTCCGATCCTTAAA 59.447 43.478 0.00 0.00 0.00 1.52
602 607 3.117794 CGTAAATGCGTCCGATCCTTAA 58.882 45.455 0.00 0.00 0.00 1.85
603 608 2.358582 TCGTAAATGCGTCCGATCCTTA 59.641 45.455 0.00 0.00 0.00 2.69
604 609 1.135527 TCGTAAATGCGTCCGATCCTT 59.864 47.619 0.00 0.00 0.00 3.36
605 610 0.742505 TCGTAAATGCGTCCGATCCT 59.257 50.000 0.00 0.00 0.00 3.24
606 611 1.455786 CATCGTAAATGCGTCCGATCC 59.544 52.381 5.43 0.00 37.91 3.36
607 612 2.124903 ACATCGTAAATGCGTCCGATC 58.875 47.619 5.43 0.00 37.91 3.69
608 613 2.124903 GACATCGTAAATGCGTCCGAT 58.875 47.619 3.15 3.15 40.39 4.18
609 614 1.135344 TGACATCGTAAATGCGTCCGA 60.135 47.619 0.00 0.00 0.00 4.55
610 615 1.273688 TGACATCGTAAATGCGTCCG 58.726 50.000 0.00 0.00 0.00 4.79
611 616 2.221055 GGATGACATCGTAAATGCGTCC 59.779 50.000 9.31 0.00 0.00 4.79
612 617 2.221055 GGGATGACATCGTAAATGCGTC 59.779 50.000 9.31 0.00 0.00 5.19
613 618 2.158957 AGGGATGACATCGTAAATGCGT 60.159 45.455 9.31 0.00 0.00 5.24
614 619 2.221749 CAGGGATGACATCGTAAATGCG 59.778 50.000 9.31 0.00 0.00 4.73
615 620 3.206150 ACAGGGATGACATCGTAAATGC 58.794 45.455 9.31 0.00 0.00 3.56
616 621 4.025730 CGAACAGGGATGACATCGTAAATG 60.026 45.833 9.31 6.03 0.00 2.32
617 622 4.119862 CGAACAGGGATGACATCGTAAAT 58.880 43.478 9.31 0.00 0.00 1.40
618 623 3.056393 ACGAACAGGGATGACATCGTAAA 60.056 43.478 9.31 0.00 41.20 2.01
619 624 2.494471 ACGAACAGGGATGACATCGTAA 59.506 45.455 9.31 0.00 41.20 3.18
620 625 2.097036 ACGAACAGGGATGACATCGTA 58.903 47.619 9.31 0.00 41.20 3.43
621 626 0.895530 ACGAACAGGGATGACATCGT 59.104 50.000 9.31 0.86 38.55 3.73
622 627 1.280982 CACGAACAGGGATGACATCG 58.719 55.000 9.31 0.21 36.45 3.84
623 628 1.066143 ACCACGAACAGGGATGACATC 60.066 52.381 6.91 6.91 0.00 3.06
624 629 0.984230 ACCACGAACAGGGATGACAT 59.016 50.000 0.00 0.00 0.00 3.06
625 630 1.548719 CTACCACGAACAGGGATGACA 59.451 52.381 0.00 0.00 0.00 3.58
626 631 1.549170 ACTACCACGAACAGGGATGAC 59.451 52.381 0.00 0.00 0.00 3.06
627 632 1.933021 ACTACCACGAACAGGGATGA 58.067 50.000 0.00 0.00 0.00 2.92
628 633 2.159142 GGTACTACCACGAACAGGGATG 60.159 54.545 0.00 0.00 38.42 3.51
629 634 2.105766 GGTACTACCACGAACAGGGAT 58.894 52.381 0.00 0.00 38.42 3.85
630 635 1.549203 GGTACTACCACGAACAGGGA 58.451 55.000 0.00 0.00 38.42 4.20
631 636 0.533951 GGGTACTACCACGAACAGGG 59.466 60.000 7.57 0.00 41.02 4.45
632 637 1.553706 AGGGTACTACCACGAACAGG 58.446 55.000 7.57 0.00 41.02 4.00
633 638 3.672767 AAAGGGTACTACCACGAACAG 57.327 47.619 7.57 0.00 41.02 3.16
634 639 3.642848 AGAAAAGGGTACTACCACGAACA 59.357 43.478 7.57 0.00 41.02 3.18
635 640 4.240888 GAGAAAAGGGTACTACCACGAAC 58.759 47.826 7.57 0.00 41.02 3.95
636 641 3.057315 CGAGAAAAGGGTACTACCACGAA 60.057 47.826 7.57 0.00 41.02 3.85
637 642 2.489329 CGAGAAAAGGGTACTACCACGA 59.511 50.000 7.57 0.00 41.02 4.35
638 643 2.872370 CGAGAAAAGGGTACTACCACG 58.128 52.381 7.57 0.00 41.02 4.94
639 644 2.614779 GCGAGAAAAGGGTACTACCAC 58.385 52.381 7.57 0.00 41.02 4.16
640 645 1.203052 CGCGAGAAAAGGGTACTACCA 59.797 52.381 0.00 0.00 41.02 3.25
641 646 1.474077 TCGCGAGAAAAGGGTACTACC 59.526 52.381 3.71 0.00 37.03 3.18
642 647 2.927553 TCGCGAGAAAAGGGTACTAC 57.072 50.000 3.71 0.00 37.03 2.73
654 659 2.363788 ATAACTGCTGTTTCGCGAGA 57.636 45.000 14.54 0.43 37.59 4.04
655 660 3.455619 AAATAACTGCTGTTTCGCGAG 57.544 42.857 14.54 0.00 37.59 5.03
656 661 3.002862 ACAAAATAACTGCTGTTTCGCGA 59.997 39.130 14.54 3.71 37.59 5.87
657 662 3.117832 CACAAAATAACTGCTGTTTCGCG 59.882 43.478 14.54 0.00 37.59 5.87
658 663 3.425193 CCACAAAATAACTGCTGTTTCGC 59.575 43.478 14.54 0.00 37.59 4.70
659 664 3.980775 CCCACAAAATAACTGCTGTTTCG 59.019 43.478 14.54 2.26 37.59 3.46
660 665 4.944048 ACCCACAAAATAACTGCTGTTTC 58.056 39.130 14.54 0.00 37.59 2.78
661 666 4.202212 GGACCCACAAAATAACTGCTGTTT 60.202 41.667 14.54 0.31 37.59 2.83
662 667 3.320826 GGACCCACAAAATAACTGCTGTT 59.679 43.478 13.80 13.80 39.98 3.16
663 668 2.890945 GGACCCACAAAATAACTGCTGT 59.109 45.455 0.00 0.00 0.00 4.40
664 669 2.095263 CGGACCCACAAAATAACTGCTG 60.095 50.000 0.00 0.00 0.00 4.41
665 670 2.159382 CGGACCCACAAAATAACTGCT 58.841 47.619 0.00 0.00 0.00 4.24
666 671 1.402325 GCGGACCCACAAAATAACTGC 60.402 52.381 0.00 0.00 0.00 4.40
667 672 1.135803 CGCGGACCCACAAAATAACTG 60.136 52.381 0.00 0.00 0.00 3.16
668 673 1.161843 CGCGGACCCACAAAATAACT 58.838 50.000 0.00 0.00 0.00 2.24
669 674 0.455464 GCGCGGACCCACAAAATAAC 60.455 55.000 8.83 0.00 0.00 1.89
670 675 1.587933 GGCGCGGACCCACAAAATAA 61.588 55.000 8.83 0.00 0.00 1.40
671 676 2.041686 GGCGCGGACCCACAAAATA 61.042 57.895 8.83 0.00 0.00 1.40
672 677 3.370231 GGCGCGGACCCACAAAAT 61.370 61.111 8.83 0.00 0.00 1.82
673 678 4.877619 TGGCGCGGACCCACAAAA 62.878 61.111 8.83 0.00 0.00 2.44
674 679 4.652131 ATGGCGCGGACCCACAAA 62.652 61.111 8.83 0.00 34.68 2.83
677 682 3.961838 TTACATGGCGCGGACCCAC 62.962 63.158 8.83 0.00 34.68 4.61
678 683 3.673956 CTTACATGGCGCGGACCCA 62.674 63.158 8.83 7.44 36.66 4.51
679 684 2.895372 CTTACATGGCGCGGACCC 60.895 66.667 8.83 0.08 0.00 4.46
680 685 2.895372 CCTTACATGGCGCGGACC 60.895 66.667 8.83 0.99 0.00 4.46
681 686 2.895372 CCCTTACATGGCGCGGAC 60.895 66.667 8.83 0.00 0.00 4.79
682 687 3.379865 GACCCTTACATGGCGCGGA 62.380 63.158 8.83 0.00 0.00 5.54
683 688 2.895372 GACCCTTACATGGCGCGG 60.895 66.667 8.83 0.00 0.00 6.46
684 689 2.895372 GGACCCTTACATGGCGCG 60.895 66.667 0.00 0.00 0.00 6.86
685 690 1.819632 CAGGACCCTTACATGGCGC 60.820 63.158 0.00 0.00 0.00 6.53
686 691 1.819632 GCAGGACCCTTACATGGCG 60.820 63.158 0.00 0.00 0.00 5.69
687 692 0.749454 CTGCAGGACCCTTACATGGC 60.749 60.000 5.57 0.00 0.00 4.40
688 693 0.749454 GCTGCAGGACCCTTACATGG 60.749 60.000 17.12 0.00 0.00 3.66
689 694 0.035152 TGCTGCAGGACCCTTACATG 60.035 55.000 17.12 0.00 0.00 3.21
690 695 0.254178 CTGCTGCAGGACCCTTACAT 59.746 55.000 21.71 0.00 0.00 2.29
691 696 1.679311 CTGCTGCAGGACCCTTACA 59.321 57.895 21.71 0.76 0.00 2.41
692 697 4.625800 CTGCTGCAGGACCCTTAC 57.374 61.111 21.71 0.00 0.00 2.34
702 707 2.703416 CACTACAGATTTCCTGCTGCA 58.297 47.619 0.88 0.88 46.81 4.41
801 808 2.380410 CCGACGGGCTCGAAACTTG 61.380 63.158 15.95 0.00 46.14 3.16
868 875 1.296056 CCGTGGAAATTTCGGACGCT 61.296 55.000 24.98 0.00 46.05 5.07
872 879 0.958382 CAGGCCGTGGAAATTTCGGA 60.958 55.000 18.13 3.13 46.05 4.55
1296 1350 1.712081 CTGCTTGCCGATCTTGACG 59.288 57.895 0.00 0.00 0.00 4.35
1326 1380 0.388134 GCCTGTTTAGCGACTCGTCA 60.388 55.000 0.00 0.00 0.00 4.35
1677 1731 3.765511 CCCACATCACCAGATTGAATGTT 59.234 43.478 0.00 0.00 30.20 2.71
1778 1832 4.576463 GGAGACAGTCAAAGTTGTTCATGT 59.424 41.667 2.66 0.00 0.00 3.21
2022 2076 0.037326 TGAACAGCGACCAGACATCC 60.037 55.000 0.00 0.00 0.00 3.51
2028 2082 1.734477 CCTCGTGAACAGCGACCAG 60.734 63.158 0.00 0.00 34.47 4.00
2082 2136 2.432972 CCAATTGCCTGCAACGCC 60.433 61.111 6.72 0.00 38.88 5.68
2085 2139 0.108945 GCTCTCCAATTGCCTGCAAC 60.109 55.000 6.72 0.00 38.88 4.17
2115 2169 0.901580 ATGGCAACCCCTTGAGCTTG 60.902 55.000 0.00 0.00 0.00 4.01
2202 2256 2.645838 TGGCATAGCTTTCCATCTCC 57.354 50.000 0.00 0.00 0.00 3.71
2321 2375 2.215196 TCTTAACCAACTTGTCACGCC 58.785 47.619 0.00 0.00 0.00 5.68
2373 2427 1.988107 AGTTTCCTCCCATCAGCTTCA 59.012 47.619 0.00 0.00 0.00 3.02
2374 2428 2.363683 CAGTTTCCTCCCATCAGCTTC 58.636 52.381 0.00 0.00 0.00 3.86
2375 2429 1.005215 CCAGTTTCCTCCCATCAGCTT 59.995 52.381 0.00 0.00 0.00 3.74
2376 2430 0.622665 CCAGTTTCCTCCCATCAGCT 59.377 55.000 0.00 0.00 0.00 4.24
2377 2431 0.620556 TCCAGTTTCCTCCCATCAGC 59.379 55.000 0.00 0.00 0.00 4.26
2378 2432 1.211457 CCTCCAGTTTCCTCCCATCAG 59.789 57.143 0.00 0.00 0.00 2.90
2451 2505 1.377725 CTGATGGCCCTCTTTGCGT 60.378 57.895 9.61 0.00 0.00 5.24
2589 2643 1.391485 GTGACAGCATCAGCAGTAACG 59.609 52.381 0.00 0.00 40.89 3.18
2648 2702 7.552687 ACGAGGAATGCTTTAGAATTATGAACA 59.447 33.333 0.00 0.00 0.00 3.18
2839 2893 5.943416 TCTGAAGAAGGAACAGTTTTGTCAA 59.057 36.000 0.00 0.00 36.23 3.18
2891 2945 1.726853 ATCTTTCGGAAACTGCTCGG 58.273 50.000 0.00 0.00 0.00 4.63
2938 2992 1.492176 ACTTGCCCTGTCCATATCCAG 59.508 52.381 0.00 0.00 0.00 3.86
3142 3196 5.710567 GCACCTTAATACCCTGTTTCTTTCT 59.289 40.000 0.00 0.00 0.00 2.52
3315 3369 4.065789 GTGTACTTCCCTCCTTCAACTTG 58.934 47.826 0.00 0.00 0.00 3.16
3332 3386 4.752146 AGATTTAAGTAGGCACGGTGTAC 58.248 43.478 10.24 5.47 0.00 2.90
3454 3508 3.875727 CCATAGAACTCACTGCCAATCTG 59.124 47.826 0.00 0.00 0.00 2.90
3534 3588 1.133915 TCTTTGGTCCACTCAACCCAC 60.134 52.381 0.00 0.00 35.84 4.61
3562 3616 2.302733 GCCTGGGAAAAACATTGGTCAT 59.697 45.455 0.00 0.00 0.00 3.06
3596 3650 5.366477 ACCAATTTGGGACAGTTCAAAAGAT 59.634 36.000 19.39 0.00 43.37 2.40
3711 3765 0.510359 CAACACTGCAAGCTCTCGAC 59.490 55.000 0.00 0.00 37.60 4.20
3748 3802 3.577805 ACCTATTGTAAGGATGGTGGC 57.422 47.619 0.00 0.00 39.15 5.01
3856 3910 3.630892 ATGCAGCTTCTTCAGTGAGAT 57.369 42.857 0.00 0.00 0.00 2.75
3901 3955 1.956477 CAAACAAGTACCCAGCTGCTT 59.044 47.619 8.66 3.08 0.00 3.91
3936 3990 3.525609 TGTCTATCTCCAGAGAGGTGAGT 59.474 47.826 3.41 0.00 42.75 3.41
3939 3993 4.097741 CAGTTGTCTATCTCCAGAGAGGTG 59.902 50.000 3.41 0.00 41.33 4.00
3990 4044 1.135373 GTCAATCCGCTCGAACTCTCA 60.135 52.381 0.00 0.00 0.00 3.27
4008 4062 0.179282 GTCGAATGTGCAACGTCGTC 60.179 55.000 12.28 5.25 44.36 4.20
4060 4114 1.370900 CCAGTGCTGCAAAACTCGC 60.371 57.895 2.77 0.00 0.00 5.03
4090 4144 1.129437 GAGCTTGGAGCAATTGTCGAC 59.871 52.381 9.11 9.11 45.56 4.20
4376 4430 0.806884 TTGAACGGCGACAACGAACT 60.807 50.000 16.62 0.00 42.66 3.01
4377 4431 0.382636 CTTGAACGGCGACAACGAAC 60.383 55.000 16.62 0.00 42.66 3.95
4378 4432 0.528033 TCTTGAACGGCGACAACGAA 60.528 50.000 16.62 3.60 42.66 3.85
4380 4434 0.511221 ATTCTTGAACGGCGACAACG 59.489 50.000 16.62 12.67 42.93 4.10
4381 4435 1.950472 CATTCTTGAACGGCGACAAC 58.050 50.000 16.62 1.98 0.00 3.32
4382 4436 0.237235 GCATTCTTGAACGGCGACAA 59.763 50.000 16.62 17.85 0.00 3.18
4383 4437 1.573829 GGCATTCTTGAACGGCGACA 61.574 55.000 16.62 10.89 0.00 4.35
4403 4457 9.163894 TCTATCTGATCATTTCATAGGAAAGGT 57.836 33.333 13.43 2.56 45.58 3.50
4424 4478 2.909244 CACATACCGCGTCGATTCTATC 59.091 50.000 4.92 0.00 0.00 2.08
4482 4536 8.260114 TCTCATCTTGCATACTAGAATTTCACA 58.740 33.333 0.00 0.00 31.34 3.58
4533 4674 9.935682 GAATTTCACACATTACATACATACAGG 57.064 33.333 0.00 0.00 0.00 4.00
4595 4744 4.019174 AGAATGTACATCAGCCAAAAGGG 58.981 43.478 9.23 0.00 40.85 3.95
4598 4747 6.839124 AATGAGAATGTACATCAGCCAAAA 57.161 33.333 9.23 0.00 0.00 2.44
4624 4773 5.930135 AGGCTACAAACAGAAAGAGAAAGA 58.070 37.500 0.00 0.00 0.00 2.52
4631 4780 3.854784 GCAGCAAGGCTACAAACAGAAAG 60.855 47.826 0.00 0.00 36.40 2.62
4635 4784 0.110056 CGCAGCAAGGCTACAAACAG 60.110 55.000 0.00 0.00 36.40 3.16
4637 4786 0.804989 ATCGCAGCAAGGCTACAAAC 59.195 50.000 0.00 0.00 36.40 2.93
4638 4787 1.199789 CAATCGCAGCAAGGCTACAAA 59.800 47.619 0.00 0.00 36.40 2.83
4639 4788 0.804364 CAATCGCAGCAAGGCTACAA 59.196 50.000 0.00 0.00 36.40 2.41
4640 4789 0.036483 TCAATCGCAGCAAGGCTACA 60.036 50.000 0.00 0.00 36.40 2.74
4642 4791 0.250234 AGTCAATCGCAGCAAGGCTA 59.750 50.000 0.00 0.00 36.40 3.93
4643 4792 1.002868 AGTCAATCGCAGCAAGGCT 60.003 52.632 0.00 0.00 40.77 4.58
4644 4793 1.136147 CAGTCAATCGCAGCAAGGC 59.864 57.895 0.00 0.00 0.00 4.35
4645 4794 0.725686 CTCAGTCAATCGCAGCAAGG 59.274 55.000 0.00 0.00 0.00 3.61
4647 4796 0.321034 AGCTCAGTCAATCGCAGCAA 60.321 50.000 0.00 0.00 32.17 3.91
4649 4798 1.018226 ACAGCTCAGTCAATCGCAGC 61.018 55.000 0.00 0.00 0.00 5.25
4650 4799 1.436600 AACAGCTCAGTCAATCGCAG 58.563 50.000 0.00 0.00 0.00 5.18
4651 4800 2.736721 GTTAACAGCTCAGTCAATCGCA 59.263 45.455 0.00 0.00 0.00 5.10
4652 4801 2.736721 TGTTAACAGCTCAGTCAATCGC 59.263 45.455 3.59 0.00 0.00 4.58
4654 4803 6.672147 ACATTTGTTAACAGCTCAGTCAATC 58.328 36.000 8.56 0.00 0.00 2.67
4655 4804 6.639632 ACATTTGTTAACAGCTCAGTCAAT 57.360 33.333 8.56 0.48 0.00 2.57
4656 4805 7.561021 TTACATTTGTTAACAGCTCAGTCAA 57.439 32.000 8.56 0.00 0.00 3.18
4657 4806 7.443879 TGATTACATTTGTTAACAGCTCAGTCA 59.556 33.333 8.56 6.87 0.00 3.41
4658 4807 7.746475 GTGATTACATTTGTTAACAGCTCAGTC 59.254 37.037 8.56 4.56 0.00 3.51
4659 4808 7.445402 AGTGATTACATTTGTTAACAGCTCAGT 59.555 33.333 8.56 7.30 0.00 3.41
4660 4809 7.810658 AGTGATTACATTTGTTAACAGCTCAG 58.189 34.615 8.56 1.79 0.00 3.35
4663 4812 7.607991 AGCTAGTGATTACATTTGTTAACAGCT 59.392 33.333 8.56 5.96 0.00 4.24
4664 4813 7.752695 AGCTAGTGATTACATTTGTTAACAGC 58.247 34.615 8.56 3.70 0.00 4.40
4676 4825 6.929049 CCGATCCAATTTAGCTAGTGATTACA 59.071 38.462 0.00 0.00 0.00 2.41
4677 4826 6.929606 ACCGATCCAATTTAGCTAGTGATTAC 59.070 38.462 0.00 0.00 0.00 1.89
4678 4827 6.929049 CACCGATCCAATTTAGCTAGTGATTA 59.071 38.462 0.00 0.00 0.00 1.75
4679 4828 5.760253 CACCGATCCAATTTAGCTAGTGATT 59.240 40.000 0.00 0.00 0.00 2.57
4680 4829 5.163301 ACACCGATCCAATTTAGCTAGTGAT 60.163 40.000 8.80 2.12 0.00 3.06
4682 4831 4.442706 ACACCGATCCAATTTAGCTAGTG 58.557 43.478 0.00 0.00 0.00 2.74
4683 4832 4.755266 ACACCGATCCAATTTAGCTAGT 57.245 40.909 0.00 0.00 0.00 2.57
4684 4833 7.730364 AATAACACCGATCCAATTTAGCTAG 57.270 36.000 0.00 0.00 0.00 3.42
4685 4834 7.990886 AGAAATAACACCGATCCAATTTAGCTA 59.009 33.333 0.00 0.00 0.00 3.32
4686 4835 6.828785 AGAAATAACACCGATCCAATTTAGCT 59.171 34.615 0.00 0.00 0.00 3.32
4687 4836 7.027778 AGAAATAACACCGATCCAATTTAGC 57.972 36.000 0.00 0.00 0.00 3.09
4688 4837 9.855021 AAAAGAAATAACACCGATCCAATTTAG 57.145 29.630 0.00 0.00 0.00 1.85
4689 4838 9.849166 GAAAAGAAATAACACCGATCCAATTTA 57.151 29.630 0.00 0.00 0.00 1.40
4690 4839 7.540745 CGAAAAGAAATAACACCGATCCAATTT 59.459 33.333 0.00 0.00 0.00 1.82
4691 4840 7.027161 CGAAAAGAAATAACACCGATCCAATT 58.973 34.615 0.00 0.00 0.00 2.32
4692 4841 6.150474 ACGAAAAGAAATAACACCGATCCAAT 59.850 34.615 0.00 0.00 0.00 3.16
4693 4842 5.470777 ACGAAAAGAAATAACACCGATCCAA 59.529 36.000 0.00 0.00 0.00 3.53
4694 4843 4.998672 ACGAAAAGAAATAACACCGATCCA 59.001 37.500 0.00 0.00 0.00 3.41
4695 4844 5.541098 ACGAAAAGAAATAACACCGATCC 57.459 39.130 0.00 0.00 0.00 3.36
4696 4845 5.283012 GCAACGAAAAGAAATAACACCGATC 59.717 40.000 0.00 0.00 0.00 3.69
4697 4846 5.048991 AGCAACGAAAAGAAATAACACCGAT 60.049 36.000 0.00 0.00 0.00 4.18
4698 4847 4.273969 AGCAACGAAAAGAAATAACACCGA 59.726 37.500 0.00 0.00 0.00 4.69
4699 4848 4.533222 AGCAACGAAAAGAAATAACACCG 58.467 39.130 0.00 0.00 0.00 4.94
4700 4849 5.974751 TGAAGCAACGAAAAGAAATAACACC 59.025 36.000 0.00 0.00 0.00 4.16
4701 4850 7.327378 GTTGAAGCAACGAAAAGAAATAACAC 58.673 34.615 0.00 0.00 34.63 3.32
4702 4851 7.444558 GTTGAAGCAACGAAAAGAAATAACA 57.555 32.000 0.00 0.00 34.63 2.41
4732 4881 2.209690 ACCAATCAACGTAAAGGGGG 57.790 50.000 0.00 0.00 0.00 5.40
4742 4891 8.716909 CCCACATTTTGTTATTTACCAATCAAC 58.283 33.333 0.00 0.00 0.00 3.18
4763 4914 2.054021 TGGACTGAAATCTGACCCACA 58.946 47.619 6.41 0.00 0.00 4.17
4766 4917 2.814336 GTTGTGGACTGAAATCTGACCC 59.186 50.000 6.41 2.86 0.00 4.46
4768 4919 2.096218 GCGTTGTGGACTGAAATCTGAC 60.096 50.000 0.00 0.00 0.00 3.51
4792 4943 8.869897 CAATGATAAAAGTAGTACATGTGACGT 58.130 33.333 9.11 0.00 0.00 4.34
4794 4945 8.612619 CCCAATGATAAAAGTAGTACATGTGAC 58.387 37.037 9.11 3.92 0.00 3.67
4795 4946 8.544622 TCCCAATGATAAAAGTAGTACATGTGA 58.455 33.333 9.11 0.00 0.00 3.58
4835 4986 6.101650 TGTTTCAGAATTCAGACTAGAGCA 57.898 37.500 8.44 0.00 0.00 4.26
4836 4987 6.593382 ACATGTTTCAGAATTCAGACTAGAGC 59.407 38.462 8.44 0.00 0.00 4.09
4837 4988 8.545229 AACATGTTTCAGAATTCAGACTAGAG 57.455 34.615 4.92 0.00 0.00 2.43
4838 4989 8.908786 AAACATGTTTCAGAATTCAGACTAGA 57.091 30.769 18.13 0.00 0.00 2.43
4864 5015 0.859232 GACGTAGGTGTTGTGTGCTG 59.141 55.000 0.00 0.00 0.00 4.41
4906 5058 2.989571 ACCAGGAAAAGGAGGATCAAGT 59.010 45.455 0.00 0.00 36.25 3.16
4909 5061 2.921221 AGACCAGGAAAAGGAGGATCA 58.079 47.619 0.00 0.00 36.25 2.92
4911 5063 3.803340 TGTAGACCAGGAAAAGGAGGAT 58.197 45.455 0.00 0.00 0.00 3.24
4948 5100 7.269316 TCTGTAGTATGCCGTGATTGAAATAA 58.731 34.615 0.00 0.00 0.00 1.40
4955 5111 4.189231 GGTTTCTGTAGTATGCCGTGATT 58.811 43.478 0.00 0.00 0.00 2.57
4961 5117 5.977489 AAAAAGGGTTTCTGTAGTATGCC 57.023 39.130 0.00 0.00 0.00 4.40
4983 5139 6.644347 TCCTGAAATTGGTTACTTGCAAAAA 58.356 32.000 0.00 0.00 0.00 1.94
4984 5140 6.227298 TCCTGAAATTGGTTACTTGCAAAA 57.773 33.333 0.00 0.00 0.00 2.44
4985 5141 5.860941 TCCTGAAATTGGTTACTTGCAAA 57.139 34.783 0.00 0.00 0.00 3.68
4986 5142 7.395772 TCATATCCTGAAATTGGTTACTTGCAA 59.604 33.333 0.00 0.00 0.00 4.08
4987 5143 6.889177 TCATATCCTGAAATTGGTTACTTGCA 59.111 34.615 0.00 0.00 0.00 4.08
4988 5144 7.333528 TCATATCCTGAAATTGGTTACTTGC 57.666 36.000 0.00 0.00 0.00 4.01
4991 5147 9.799106 CCTAATCATATCCTGAAATTGGTTACT 57.201 33.333 0.00 0.00 37.44 2.24
4992 5148 9.793259 TCCTAATCATATCCTGAAATTGGTTAC 57.207 33.333 0.00 0.00 37.44 2.50
4994 5150 8.506083 ACTCCTAATCATATCCTGAAATTGGTT 58.494 33.333 0.00 0.00 37.44 3.67
4995 5151 8.050316 ACTCCTAATCATATCCTGAAATTGGT 57.950 34.615 0.00 0.00 37.44 3.67
5005 5161 9.553064 CAGCCATAATTACTCCTAATCATATCC 57.447 37.037 0.00 0.00 0.00 2.59
5013 5169 9.569122 GGTTTTATCAGCCATAATTACTCCTAA 57.431 33.333 0.00 0.00 0.00 2.69
5019 5175 9.816354 AACATTGGTTTTATCAGCCATAATTAC 57.184 29.630 0.00 0.00 31.83 1.89
5078 5234 8.621286 TCTCTCAAGCTTTTCGAAACTTTTATT 58.379 29.630 10.79 0.00 0.00 1.40
5081 5237 6.128007 TGTCTCTCAAGCTTTTCGAAACTTTT 60.128 34.615 10.79 2.23 0.00 2.27
5090 5246 2.550180 GTGGGTGTCTCTCAAGCTTTTC 59.450 50.000 0.00 0.00 0.00 2.29
5096 5252 3.812053 CAGAAAAGTGGGTGTCTCTCAAG 59.188 47.826 0.00 0.00 0.00 3.02
5106 5271 2.572290 CCTTCGTTCAGAAAAGTGGGT 58.428 47.619 0.00 0.00 38.57 4.51
5107 5272 1.880027 CCCTTCGTTCAGAAAAGTGGG 59.120 52.381 0.00 0.00 38.57 4.61
5120 5285 3.883744 CTTGCGGTGCTCCCTTCGT 62.884 63.158 0.00 0.00 0.00 3.85
5123 5288 2.221299 TACCTTGCGGTGCTCCCTT 61.221 57.895 0.00 0.00 45.18 3.95
5134 5299 4.437390 CGAATGTCTGAAATGGTACCTTGC 60.437 45.833 14.36 4.38 0.00 4.01
5135 5300 4.437390 GCGAATGTCTGAAATGGTACCTTG 60.437 45.833 14.36 0.00 0.00 3.61
5175 5340 8.918202 AGTGTGTATTGTCCTTTATTGAGAAA 57.082 30.769 0.00 0.00 0.00 2.52
5195 5360 7.697691 AGTTCTTGATTTACAAACTGAGTGTG 58.302 34.615 0.15 0.15 38.08 3.82
5225 5391 2.171237 CCCTGTGCATCCTCAATGTCTA 59.829 50.000 0.00 0.00 37.71 2.59
5232 5398 0.770499 TTTGTCCCTGTGCATCCTCA 59.230 50.000 0.00 0.00 0.00 3.86
5269 5435 6.523201 CACTTTAGGCGTCATGTTATTTGTTC 59.477 38.462 0.00 0.00 0.00 3.18
5285 5451 1.454201 GCCTTGAGGACACTTTAGGC 58.546 55.000 0.06 0.00 42.47 3.93
5286 5452 1.275291 TCGCCTTGAGGACACTTTAGG 59.725 52.381 0.06 0.00 37.39 2.69
5287 5453 2.338500 GTCGCCTTGAGGACACTTTAG 58.662 52.381 0.06 0.00 37.39 1.85
5288 5454 1.001633 GGTCGCCTTGAGGACACTTTA 59.998 52.381 0.06 0.00 37.39 1.85
5289 5455 0.250338 GGTCGCCTTGAGGACACTTT 60.250 55.000 0.06 0.00 37.39 2.66
5290 5456 1.371558 GGTCGCCTTGAGGACACTT 59.628 57.895 0.06 0.00 37.39 3.16
5291 5457 1.407656 TTGGTCGCCTTGAGGACACT 61.408 55.000 0.06 0.00 37.39 3.55
5292 5458 0.951040 CTTGGTCGCCTTGAGGACAC 60.951 60.000 0.06 0.00 37.39 3.67
5293 5459 1.371183 CTTGGTCGCCTTGAGGACA 59.629 57.895 0.06 0.00 37.39 4.02
5294 5460 1.376037 CCTTGGTCGCCTTGAGGAC 60.376 63.158 0.06 0.00 37.39 3.85
5295 5461 2.592993 CCCTTGGTCGCCTTGAGGA 61.593 63.158 0.06 0.00 37.39 3.71
5296 5462 2.045926 CCCTTGGTCGCCTTGAGG 60.046 66.667 0.00 0.00 38.53 3.86
5297 5463 2.747855 GCCCTTGGTCGCCTTGAG 60.748 66.667 0.00 0.00 0.00 3.02
5298 5464 3.565214 TGCCCTTGGTCGCCTTGA 61.565 61.111 0.00 0.00 0.00 3.02
5299 5465 3.365265 GTGCCCTTGGTCGCCTTG 61.365 66.667 0.00 0.00 0.00 3.61
5300 5466 4.660938 GGTGCCCTTGGTCGCCTT 62.661 66.667 0.00 0.00 0.00 4.35
5303 5469 3.712907 TAGGGTGCCCTTGGTCGC 61.713 66.667 15.82 0.00 45.70 5.19
5304 5470 2.267961 GTAGGGTGCCCTTGGTCG 59.732 66.667 15.82 0.00 45.70 4.79
5305 5471 1.002502 GTGTAGGGTGCCCTTGGTC 60.003 63.158 15.82 5.05 45.70 4.02
5306 5472 1.772567 TGTGTAGGGTGCCCTTGGT 60.773 57.895 15.82 0.00 45.70 3.67
5307 5473 1.303317 GTGTGTAGGGTGCCCTTGG 60.303 63.158 15.82 0.00 45.70 3.61
5308 5474 1.303317 GGTGTGTAGGGTGCCCTTG 60.303 63.158 15.82 0.00 45.70 3.61
5309 5475 1.140134 ATGGTGTGTAGGGTGCCCTT 61.140 55.000 15.82 0.00 45.70 3.95
5311 5477 0.965363 CAATGGTGTGTAGGGTGCCC 60.965 60.000 0.00 0.00 0.00 5.36
5312 5478 0.037590 TCAATGGTGTGTAGGGTGCC 59.962 55.000 0.00 0.00 0.00 5.01
5313 5479 2.128771 ATCAATGGTGTGTAGGGTGC 57.871 50.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.