Multiple sequence alignment - TraesCS1A01G259400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G259400 chr1A 100.000 4656 0 0 1 4656 452456333 452451678 0.000000e+00 8599
1 TraesCS1A01G259400 chr1A 96.226 3127 88 16 1246 4359 452296725 452293616 0.000000e+00 5094
2 TraesCS1A01G259400 chr1A 96.840 443 14 0 642 1084 452297166 452296724 0.000000e+00 741
3 TraesCS1A01G259400 chr1A 96.231 398 11 2 83 479 452297551 452297157 0.000000e+00 649
4 TraesCS1A01G259400 chr1A 99.401 167 1 0 1081 1247 233421508 233421342 2.110000e-78 303
5 TraesCS1A01G259400 chr1A 97.647 85 0 2 1 84 452456253 452456336 1.350000e-30 145
6 TraesCS1A01G259400 chr1A 93.548 93 4 2 1 92 74436437 74436528 2.260000e-28 137
7 TraesCS1A01G259400 chr1D 95.659 3432 99 16 1246 4656 351544943 351541541 0.000000e+00 5467
8 TraesCS1A01G259400 chr1D 95.427 3127 112 10 1246 4361 351917640 351914534 0.000000e+00 4953
9 TraesCS1A01G259400 chr1D 97.709 1004 20 3 83 1084 351918641 351917639 0.000000e+00 1724
10 TraesCS1A01G259400 chr1D 97.512 1005 21 4 83 1084 351545945 351544942 0.000000e+00 1714
11 TraesCS1A01G259400 chr1B 93.994 3463 137 22 1246 4656 474262146 474258703 0.000000e+00 5177
12 TraesCS1A01G259400 chr1B 96.720 1006 28 4 83 1084 474263149 474262145 0.000000e+00 1670
13 TraesCS1A01G259400 chr1B 93.717 191 5 5 1083 1273 486835630 486835813 3.550000e-71 279
14 TraesCS1A01G259400 chr2D 97.207 179 4 1 1073 1251 560959475 560959652 7.570000e-78 302
15 TraesCS1A01G259400 chr2D 97.126 174 5 0 1074 1247 426427792 426427965 1.270000e-75 294
16 TraesCS1A01G259400 chr7A 98.810 168 2 0 1080 1247 324925028 324925195 2.720000e-77 300
17 TraesCS1A01G259400 chr5A 97.701 174 3 1 1081 1254 290391863 290391691 9.790000e-77 298
18 TraesCS1A01G259400 chr3B 94.681 188 5 5 1074 1261 62970103 62969921 2.120000e-73 287
19 TraesCS1A01G259400 chr7D 95.000 180 8 1 1080 1259 213380242 213380420 9.860000e-72 281
20 TraesCS1A01G259400 chr6D 92.857 196 8 6 1083 1277 218383963 218383773 3.550000e-71 279
21 TraesCS1A01G259400 chr6D 96.591 88 2 1 1 88 413410043 413410129 1.350000e-30 145
22 TraesCS1A01G259400 chr6D 93.684 95 4 2 1 95 413410122 413410030 1.750000e-29 141
23 TraesCS1A01G259400 chr6A 92.857 98 5 2 1 97 354019337 354019433 1.750000e-29 141
24 TraesCS1A01G259400 chr6A 96.429 84 2 1 1 84 354019416 354019334 2.260000e-28 137
25 TraesCS1A01G259400 chr4A 94.382 89 4 1 1 89 714207249 714207162 8.130000e-28 135
26 TraesCS1A01G259400 chr3A 92.632 95 5 2 1 94 60843333 60843426 8.130000e-28 135
27 TraesCS1A01G259400 chr3A 95.349 86 2 1 1 86 213131977 213131894 8.130000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G259400 chr1A 452451678 452456333 4655 True 8599.000000 8599 100.000000 1 4656 1 chr1A.!!$R2 4655
1 TraesCS1A01G259400 chr1A 452293616 452297551 3935 True 2161.333333 5094 96.432333 83 4359 3 chr1A.!!$R3 4276
2 TraesCS1A01G259400 chr1D 351541541 351545945 4404 True 3590.500000 5467 96.585500 83 4656 2 chr1D.!!$R1 4573
3 TraesCS1A01G259400 chr1D 351914534 351918641 4107 True 3338.500000 4953 96.568000 83 4361 2 chr1D.!!$R2 4278
4 TraesCS1A01G259400 chr1B 474258703 474263149 4446 True 3423.500000 5177 95.357000 83 4656 2 chr1B.!!$R1 4573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 708 0.764271 TGCAGTGGATGGACTTGACA 59.236 50.000 0.00 0.00 0.00 3.58 F
1087 1268 0.246635 TGCGGCTTCACTTCTACTCC 59.753 55.000 0.00 0.00 0.00 3.85 F
1088 1269 0.460459 GCGGCTTCACTTCTACTCCC 60.460 60.000 0.00 0.00 0.00 4.30 F
1090 1271 1.135333 CGGCTTCACTTCTACTCCCTC 59.865 57.143 0.00 0.00 0.00 4.30 F
1092 1273 1.135333 GCTTCACTTCTACTCCCTCCG 59.865 57.143 0.00 0.00 0.00 4.63 F
3408 3604 1.066152 GCTCATTTCCAGGAATTCCGC 59.934 52.381 18.82 8.96 42.08 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1758 1.947212 GCCCGACCAAGAAAATACGGT 60.947 52.381 0.00 0.00 38.92 4.83 R
3150 3345 4.840401 TCAGAAATTCATGTTCTACGCG 57.160 40.909 3.53 3.53 33.53 6.01 R
3310 3505 3.367932 GCAAGTCGAAGATTTCATCGTCA 59.632 43.478 5.28 0.00 40.67 4.35 R
3408 3604 0.240945 GAAATGCACTGTTGGTCCCG 59.759 55.000 0.00 0.00 0.00 5.14 R
3411 3607 1.270550 CCCAGAAATGCACTGTTGGTC 59.729 52.381 0.00 0.00 34.04 4.02 R
4277 4515 0.547075 TTTTCCACAGGAACACGGGA 59.453 50.000 0.00 0.00 41.87 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
22 23 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
23 24 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
24 25 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
25 26 3.731089 TCCGTTCCAAATTACTTGTCGT 58.269 40.909 0.00 0.00 32.65 4.34
26 27 3.742369 TCCGTTCCAAATTACTTGTCGTC 59.258 43.478 0.00 0.00 32.65 4.20
27 28 3.422603 CCGTTCCAAATTACTTGTCGTCG 60.423 47.826 0.00 0.00 32.65 5.12
28 29 3.182972 CGTTCCAAATTACTTGTCGTCGT 59.817 43.478 0.00 0.00 32.65 4.34
29 30 4.318263 CGTTCCAAATTACTTGTCGTCGTT 60.318 41.667 0.00 0.00 32.65 3.85
30 31 5.504392 GTTCCAAATTACTTGTCGTCGTTT 58.496 37.500 0.00 0.00 32.65 3.60
31 32 5.738118 TCCAAATTACTTGTCGTCGTTTT 57.262 34.783 0.00 0.00 32.65 2.43
32 33 6.841443 TCCAAATTACTTGTCGTCGTTTTA 57.159 33.333 0.00 0.00 32.65 1.52
33 34 6.879962 TCCAAATTACTTGTCGTCGTTTTAG 58.120 36.000 0.00 0.00 32.65 1.85
34 35 6.479660 TCCAAATTACTTGTCGTCGTTTTAGT 59.520 34.615 0.00 0.00 32.65 2.24
35 36 7.011295 TCCAAATTACTTGTCGTCGTTTTAGTT 59.989 33.333 0.00 0.00 32.65 2.24
36 37 7.319615 CCAAATTACTTGTCGTCGTTTTAGTTC 59.680 37.037 0.00 0.00 32.65 3.01
37 38 7.467557 AATTACTTGTCGTCGTTTTAGTTCA 57.532 32.000 0.00 0.00 0.00 3.18
38 39 6.884096 TTACTTGTCGTCGTTTTAGTTCAA 57.116 33.333 0.00 0.00 0.00 2.69
39 40 5.783100 ACTTGTCGTCGTTTTAGTTCAAA 57.217 34.783 0.00 0.00 0.00 2.69
40 41 6.354039 ACTTGTCGTCGTTTTAGTTCAAAT 57.646 33.333 0.00 0.00 0.00 2.32
41 42 6.778108 ACTTGTCGTCGTTTTAGTTCAAATT 58.222 32.000 0.00 0.00 0.00 1.82
42 43 7.245604 ACTTGTCGTCGTTTTAGTTCAAATTT 58.754 30.769 0.00 0.00 0.00 1.82
43 44 7.217447 ACTTGTCGTCGTTTTAGTTCAAATTTG 59.783 33.333 12.15 12.15 0.00 2.32
44 45 5.966503 TGTCGTCGTTTTAGTTCAAATTTGG 59.033 36.000 17.90 0.12 0.00 3.28
45 46 6.183360 TGTCGTCGTTTTAGTTCAAATTTGGA 60.183 34.615 17.90 6.72 0.00 3.53
46 47 6.687958 GTCGTCGTTTTAGTTCAAATTTGGAA 59.312 34.615 17.90 8.36 0.00 3.53
47 48 6.687958 TCGTCGTTTTAGTTCAAATTTGGAAC 59.312 34.615 17.90 18.05 43.82 3.62
57 58 6.848812 GTTCAAATTTGGAACTAAAACGACG 58.151 36.000 17.90 0.00 41.05 5.12
58 59 6.360844 TCAAATTTGGAACTAAAACGACGA 57.639 33.333 17.90 0.00 0.00 4.20
59 60 6.193761 TCAAATTTGGAACTAAAACGACGAC 58.806 36.000 17.90 0.00 0.00 4.34
60 61 5.738118 AATTTGGAACTAAAACGACGACA 57.262 34.783 0.00 0.00 0.00 4.35
61 62 5.738118 ATTTGGAACTAAAACGACGACAA 57.262 34.783 0.00 0.00 0.00 3.18
62 63 4.782252 TTGGAACTAAAACGACGACAAG 57.218 40.909 0.00 0.00 0.00 3.16
63 64 3.784338 TGGAACTAAAACGACGACAAGT 58.216 40.909 0.00 0.00 0.00 3.16
64 65 4.930963 TGGAACTAAAACGACGACAAGTA 58.069 39.130 0.00 0.00 0.00 2.24
65 66 5.347342 TGGAACTAAAACGACGACAAGTAA 58.653 37.500 0.00 0.00 0.00 2.24
66 67 5.984926 TGGAACTAAAACGACGACAAGTAAT 59.015 36.000 0.00 0.00 0.00 1.89
67 68 6.479660 TGGAACTAAAACGACGACAAGTAATT 59.520 34.615 0.00 0.00 0.00 1.40
68 69 7.011295 TGGAACTAAAACGACGACAAGTAATTT 59.989 33.333 0.00 0.00 0.00 1.82
69 70 7.319615 GGAACTAAAACGACGACAAGTAATTTG 59.680 37.037 0.00 0.00 42.68 2.32
70 71 6.652245 ACTAAAACGACGACAAGTAATTTGG 58.348 36.000 0.00 0.00 41.25 3.28
71 72 5.738118 AAAACGACGACAAGTAATTTGGA 57.262 34.783 0.00 0.00 41.25 3.53
72 73 5.738118 AAACGACGACAAGTAATTTGGAA 57.262 34.783 0.00 0.00 41.25 3.53
73 74 4.720530 ACGACGACAAGTAATTTGGAAC 57.279 40.909 0.00 0.00 41.25 3.62
74 75 3.182972 ACGACGACAAGTAATTTGGAACG 59.817 43.478 0.00 0.00 41.25 3.95
75 76 3.422603 CGACGACAAGTAATTTGGAACGG 60.423 47.826 0.00 0.00 41.25 4.44
76 77 3.731089 ACGACAAGTAATTTGGAACGGA 58.269 40.909 0.00 0.00 41.25 4.69
77 78 3.744426 ACGACAAGTAATTTGGAACGGAG 59.256 43.478 0.00 0.00 41.25 4.63
78 79 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
79 80 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
80 81 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
81 82 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
311 316 2.099098 GCACAAAAGTGCGGCCTATAAT 59.901 45.455 0.00 0.00 40.72 1.28
312 317 3.314080 GCACAAAAGTGCGGCCTATAATA 59.686 43.478 0.00 0.00 40.72 0.98
313 318 4.201970 GCACAAAAGTGCGGCCTATAATAA 60.202 41.667 0.00 0.00 40.72 1.40
452 457 3.844640 AGTTTTAATTGCAGGACACCCT 58.155 40.909 0.00 0.00 45.74 4.34
474 652 7.834681 ACCCTTAAAGAAAGAAAGAAGACTTGT 59.165 33.333 0.00 0.00 37.38 3.16
475 653 8.131731 CCCTTAAAGAAAGAAAGAAGACTTGTG 58.868 37.037 0.00 0.00 37.38 3.33
476 654 7.645735 CCTTAAAGAAAGAAAGAAGACTTGTGC 59.354 37.037 0.00 0.00 37.38 4.57
477 655 6.765915 AAAGAAAGAAAGAAGACTTGTGCT 57.234 33.333 0.00 0.00 36.39 4.40
478 656 7.865706 AAAGAAAGAAAGAAGACTTGTGCTA 57.134 32.000 0.00 0.00 36.39 3.49
479 657 8.457238 AAAGAAAGAAAGAAGACTTGTGCTAT 57.543 30.769 0.00 0.00 36.39 2.97
480 658 7.665561 AGAAAGAAAGAAGACTTGTGCTATC 57.334 36.000 0.00 0.00 36.39 2.08
481 659 7.220030 AGAAAGAAAGAAGACTTGTGCTATCA 58.780 34.615 0.00 0.00 36.39 2.15
482 660 7.387397 AGAAAGAAAGAAGACTTGTGCTATCAG 59.613 37.037 0.00 0.00 36.39 2.90
483 661 6.352016 AGAAAGAAGACTTGTGCTATCAGA 57.648 37.500 0.00 0.00 36.39 3.27
484 662 6.763355 AGAAAGAAGACTTGTGCTATCAGAA 58.237 36.000 0.00 0.00 36.39 3.02
485 663 7.220030 AGAAAGAAGACTTGTGCTATCAGAAA 58.780 34.615 0.00 0.00 36.39 2.52
486 664 6.793492 AAGAAGACTTGTGCTATCAGAAAC 57.207 37.500 0.00 0.00 34.80 2.78
487 665 5.241662 AGAAGACTTGTGCTATCAGAAACC 58.758 41.667 0.00 0.00 0.00 3.27
488 666 4.623932 AGACTTGTGCTATCAGAAACCA 57.376 40.909 0.00 0.00 0.00 3.67
489 667 4.973168 AGACTTGTGCTATCAGAAACCAA 58.027 39.130 0.00 0.00 0.00 3.67
490 668 5.564550 AGACTTGTGCTATCAGAAACCAAT 58.435 37.500 0.00 0.00 0.00 3.16
491 669 5.645497 AGACTTGTGCTATCAGAAACCAATC 59.355 40.000 0.00 0.00 0.00 2.67
492 670 4.393062 ACTTGTGCTATCAGAAACCAATCG 59.607 41.667 0.00 0.00 0.00 3.34
493 671 4.200838 TGTGCTATCAGAAACCAATCGA 57.799 40.909 0.00 0.00 0.00 3.59
494 672 4.574892 TGTGCTATCAGAAACCAATCGAA 58.425 39.130 0.00 0.00 0.00 3.71
495 673 5.000591 TGTGCTATCAGAAACCAATCGAAA 58.999 37.500 0.00 0.00 0.00 3.46
496 674 5.471797 TGTGCTATCAGAAACCAATCGAAAA 59.528 36.000 0.00 0.00 0.00 2.29
497 675 6.024049 GTGCTATCAGAAACCAATCGAAAAG 58.976 40.000 0.00 0.00 0.00 2.27
498 676 5.123820 TGCTATCAGAAACCAATCGAAAAGG 59.876 40.000 0.00 0.00 0.00 3.11
499 677 5.354234 GCTATCAGAAACCAATCGAAAAGGA 59.646 40.000 7.99 0.00 0.00 3.36
500 678 5.886960 ATCAGAAACCAATCGAAAAGGAG 57.113 39.130 7.99 0.00 0.00 3.69
501 679 4.968259 TCAGAAACCAATCGAAAAGGAGA 58.032 39.130 7.99 0.00 0.00 3.71
502 680 5.373222 TCAGAAACCAATCGAAAAGGAGAA 58.627 37.500 7.99 0.00 0.00 2.87
503 681 5.470098 TCAGAAACCAATCGAAAAGGAGAAG 59.530 40.000 7.99 0.00 0.00 2.85
504 682 4.762251 AGAAACCAATCGAAAAGGAGAAGG 59.238 41.667 7.99 0.00 0.00 3.46
505 683 2.437413 ACCAATCGAAAAGGAGAAGGC 58.563 47.619 7.99 0.00 0.00 4.35
506 684 2.224769 ACCAATCGAAAAGGAGAAGGCA 60.225 45.455 7.99 0.00 0.00 4.75
507 685 3.019564 CCAATCGAAAAGGAGAAGGCAT 58.980 45.455 0.00 0.00 0.00 4.40
508 686 4.199310 CCAATCGAAAAGGAGAAGGCATA 58.801 43.478 0.00 0.00 0.00 3.14
509 687 4.640201 CCAATCGAAAAGGAGAAGGCATAA 59.360 41.667 0.00 0.00 0.00 1.90
510 688 5.125417 CCAATCGAAAAGGAGAAGGCATAAA 59.875 40.000 0.00 0.00 0.00 1.40
511 689 6.183360 CCAATCGAAAAGGAGAAGGCATAAAT 60.183 38.462 0.00 0.00 0.00 1.40
512 690 5.818136 TCGAAAAGGAGAAGGCATAAATG 57.182 39.130 0.00 0.00 0.00 2.32
527 705 4.928601 CATAAATGCAGTGGATGGACTTG 58.071 43.478 0.00 0.00 28.84 3.16
528 706 2.885135 AATGCAGTGGATGGACTTGA 57.115 45.000 0.00 0.00 28.84 3.02
529 707 2.119801 ATGCAGTGGATGGACTTGAC 57.880 50.000 0.00 0.00 28.84 3.18
530 708 0.764271 TGCAGTGGATGGACTTGACA 59.236 50.000 0.00 0.00 0.00 3.58
531 709 1.352017 TGCAGTGGATGGACTTGACAT 59.648 47.619 0.00 0.00 0.00 3.06
532 710 2.224843 TGCAGTGGATGGACTTGACATT 60.225 45.455 0.00 0.00 0.00 2.71
533 711 3.008923 TGCAGTGGATGGACTTGACATTA 59.991 43.478 0.00 0.00 0.00 1.90
534 712 4.009675 GCAGTGGATGGACTTGACATTAA 58.990 43.478 0.00 0.00 0.00 1.40
535 713 4.095483 GCAGTGGATGGACTTGACATTAAG 59.905 45.833 0.00 0.00 0.00 1.85
536 714 4.095483 CAGTGGATGGACTTGACATTAAGC 59.905 45.833 0.00 0.00 0.00 3.09
537 715 4.018960 AGTGGATGGACTTGACATTAAGCT 60.019 41.667 0.00 0.00 0.00 3.74
538 716 4.095483 GTGGATGGACTTGACATTAAGCTG 59.905 45.833 0.00 0.00 0.00 4.24
539 717 3.065925 GGATGGACTTGACATTAAGCTGC 59.934 47.826 0.00 0.00 0.00 5.25
540 718 3.423539 TGGACTTGACATTAAGCTGCT 57.576 42.857 0.00 0.00 0.00 4.24
541 719 3.754965 TGGACTTGACATTAAGCTGCTT 58.245 40.909 19.93 19.93 0.00 3.91
542 720 4.144297 TGGACTTGACATTAAGCTGCTTT 58.856 39.130 21.29 1.50 0.00 3.51
543 721 4.022935 TGGACTTGACATTAAGCTGCTTTG 60.023 41.667 21.29 15.73 0.00 2.77
544 722 4.022849 GGACTTGACATTAAGCTGCTTTGT 60.023 41.667 21.29 18.91 0.00 2.83
545 723 5.507985 GGACTTGACATTAAGCTGCTTTGTT 60.508 40.000 21.29 4.65 0.00 2.83
546 724 6.293955 GGACTTGACATTAAGCTGCTTTGTTA 60.294 38.462 21.29 13.24 0.00 2.41
547 725 6.672147 ACTTGACATTAAGCTGCTTTGTTAG 58.328 36.000 21.29 19.46 0.00 2.34
548 726 6.486657 ACTTGACATTAAGCTGCTTTGTTAGA 59.513 34.615 21.29 8.56 0.00 2.10
549 727 7.175641 ACTTGACATTAAGCTGCTTTGTTAGAT 59.824 33.333 21.29 5.88 0.00 1.98
550 728 8.560355 TTGACATTAAGCTGCTTTGTTAGATA 57.440 30.769 21.29 0.00 0.00 1.98
551 729 8.737168 TGACATTAAGCTGCTTTGTTAGATAT 57.263 30.769 21.29 0.00 0.00 1.63
552 730 9.830975 TGACATTAAGCTGCTTTGTTAGATATA 57.169 29.630 21.29 0.00 0.00 0.86
554 732 9.057089 ACATTAAGCTGCTTTGTTAGATATACC 57.943 33.333 21.29 0.00 0.00 2.73
555 733 9.056005 CATTAAGCTGCTTTGTTAGATATACCA 57.944 33.333 21.29 0.00 0.00 3.25
556 734 8.662781 TTAAGCTGCTTTGTTAGATATACCAG 57.337 34.615 21.29 0.00 0.00 4.00
557 735 5.615289 AGCTGCTTTGTTAGATATACCAGG 58.385 41.667 0.00 0.00 0.00 4.45
558 736 5.366768 AGCTGCTTTGTTAGATATACCAGGA 59.633 40.000 0.00 0.00 0.00 3.86
559 737 5.467063 GCTGCTTTGTTAGATATACCAGGAC 59.533 44.000 0.00 0.00 0.00 3.85
560 738 5.597806 TGCTTTGTTAGATATACCAGGACG 58.402 41.667 0.00 0.00 0.00 4.79
561 739 5.361571 TGCTTTGTTAGATATACCAGGACGA 59.638 40.000 0.00 0.00 0.00 4.20
562 740 6.127281 TGCTTTGTTAGATATACCAGGACGAA 60.127 38.462 0.00 0.00 0.00 3.85
563 741 6.421202 GCTTTGTTAGATATACCAGGACGAAG 59.579 42.308 0.00 0.00 32.70 3.79
564 742 6.401047 TTGTTAGATATACCAGGACGAAGG 57.599 41.667 0.00 0.00 0.00 3.46
565 743 5.452255 TGTTAGATATACCAGGACGAAGGT 58.548 41.667 0.00 0.00 41.89 3.50
566 744 5.895534 TGTTAGATATACCAGGACGAAGGTT 59.104 40.000 0.00 0.00 39.31 3.50
567 745 7.062322 TGTTAGATATACCAGGACGAAGGTTA 58.938 38.462 0.00 0.00 39.31 2.85
568 746 7.560991 TGTTAGATATACCAGGACGAAGGTTAA 59.439 37.037 0.00 0.00 39.31 2.01
569 747 8.416329 GTTAGATATACCAGGACGAAGGTTAAA 58.584 37.037 0.00 0.00 39.31 1.52
570 748 7.427989 AGATATACCAGGACGAAGGTTAAAA 57.572 36.000 0.00 0.00 39.31 1.52
571 749 8.030913 AGATATACCAGGACGAAGGTTAAAAT 57.969 34.615 0.00 0.00 39.31 1.82
572 750 8.148999 AGATATACCAGGACGAAGGTTAAAATC 58.851 37.037 0.00 0.00 39.31 2.17
573 751 4.360951 ACCAGGACGAAGGTTAAAATCA 57.639 40.909 0.00 0.00 33.39 2.57
574 752 4.324267 ACCAGGACGAAGGTTAAAATCAG 58.676 43.478 0.00 0.00 33.39 2.90
575 753 4.041198 ACCAGGACGAAGGTTAAAATCAGA 59.959 41.667 0.00 0.00 33.39 3.27
576 754 4.631813 CCAGGACGAAGGTTAAAATCAGAG 59.368 45.833 0.00 0.00 0.00 3.35
577 755 4.631813 CAGGACGAAGGTTAAAATCAGAGG 59.368 45.833 0.00 0.00 0.00 3.69
578 756 3.939592 GGACGAAGGTTAAAATCAGAGGG 59.060 47.826 0.00 0.00 0.00 4.30
579 757 3.344515 ACGAAGGTTAAAATCAGAGGGC 58.655 45.455 0.00 0.00 0.00 5.19
580 758 3.009143 ACGAAGGTTAAAATCAGAGGGCT 59.991 43.478 0.00 0.00 0.00 5.19
581 759 4.010349 CGAAGGTTAAAATCAGAGGGCTT 58.990 43.478 0.00 0.00 0.00 4.35
582 760 4.459337 CGAAGGTTAAAATCAGAGGGCTTT 59.541 41.667 0.00 0.00 0.00 3.51
583 761 5.646360 CGAAGGTTAAAATCAGAGGGCTTTA 59.354 40.000 0.00 0.00 0.00 1.85
584 762 6.150474 CGAAGGTTAAAATCAGAGGGCTTTAA 59.850 38.462 0.00 0.00 0.00 1.52
585 763 6.835819 AGGTTAAAATCAGAGGGCTTTAAC 57.164 37.500 7.45 7.45 40.81 2.01
586 764 6.311735 AGGTTAAAATCAGAGGGCTTTAACA 58.688 36.000 14.67 0.00 42.21 2.41
587 765 6.954102 AGGTTAAAATCAGAGGGCTTTAACAT 59.046 34.615 14.67 7.72 42.21 2.71
588 766 7.122799 AGGTTAAAATCAGAGGGCTTTAACATC 59.877 37.037 14.67 3.13 42.21 3.06
589 767 7.093945 GGTTAAAATCAGAGGGCTTTAACATCA 60.094 37.037 14.67 0.00 42.21 3.07
590 768 8.470002 GTTAAAATCAGAGGGCTTTAACATCAT 58.530 33.333 10.05 0.00 41.03 2.45
591 769 6.461110 AAATCAGAGGGCTTTAACATCATG 57.539 37.500 0.00 0.00 0.00 3.07
592 770 3.282021 TCAGAGGGCTTTAACATCATGC 58.718 45.455 0.00 0.00 0.00 4.06
593 771 2.360165 CAGAGGGCTTTAACATCATGCC 59.640 50.000 0.00 0.00 42.56 4.40
594 772 2.025037 AGAGGGCTTTAACATCATGCCA 60.025 45.455 0.00 0.00 44.85 4.92
595 773 2.961062 GAGGGCTTTAACATCATGCCAT 59.039 45.455 0.00 0.00 44.85 4.40
596 774 4.141181 AGAGGGCTTTAACATCATGCCATA 60.141 41.667 0.00 0.00 44.85 2.74
597 775 4.147321 AGGGCTTTAACATCATGCCATAG 58.853 43.478 0.00 0.00 44.85 2.23
598 776 3.891366 GGGCTTTAACATCATGCCATAGT 59.109 43.478 0.00 0.00 44.85 2.12
599 777 5.070001 GGGCTTTAACATCATGCCATAGTA 58.930 41.667 0.00 0.00 44.85 1.82
600 778 5.711976 GGGCTTTAACATCATGCCATAGTAT 59.288 40.000 0.00 0.00 44.85 2.12
601 779 6.127897 GGGCTTTAACATCATGCCATAGTATC 60.128 42.308 0.00 0.00 44.85 2.24
602 780 6.656693 GGCTTTAACATCATGCCATAGTATCT 59.343 38.462 0.00 0.00 42.79 1.98
603 781 7.148340 GGCTTTAACATCATGCCATAGTATCTC 60.148 40.741 0.00 0.00 42.79 2.75
604 782 7.388776 GCTTTAACATCATGCCATAGTATCTCA 59.611 37.037 0.00 0.00 0.00 3.27
605 783 9.276590 CTTTAACATCATGCCATAGTATCTCAA 57.723 33.333 0.00 0.00 0.00 3.02
606 784 8.837788 TTAACATCATGCCATAGTATCTCAAG 57.162 34.615 0.00 0.00 0.00 3.02
607 785 6.430962 ACATCATGCCATAGTATCTCAAGT 57.569 37.500 0.00 0.00 0.00 3.16
608 786 6.462500 ACATCATGCCATAGTATCTCAAGTC 58.538 40.000 0.00 0.00 0.00 3.01
609 787 5.126396 TCATGCCATAGTATCTCAAGTCG 57.874 43.478 0.00 0.00 0.00 4.18
610 788 3.371102 TGCCATAGTATCTCAAGTCGC 57.629 47.619 0.00 0.00 0.00 5.19
611 789 2.693074 TGCCATAGTATCTCAAGTCGCA 59.307 45.455 0.00 0.00 0.00 5.10
612 790 3.053455 GCCATAGTATCTCAAGTCGCAC 58.947 50.000 0.00 0.00 0.00 5.34
613 791 3.243569 GCCATAGTATCTCAAGTCGCACT 60.244 47.826 0.00 0.00 0.00 4.40
614 792 4.023107 GCCATAGTATCTCAAGTCGCACTA 60.023 45.833 0.00 0.00 0.00 2.74
615 793 5.694816 CCATAGTATCTCAAGTCGCACTAG 58.305 45.833 0.00 0.00 0.00 2.57
616 794 5.470437 CCATAGTATCTCAAGTCGCACTAGA 59.530 44.000 0.00 0.00 0.00 2.43
617 795 6.150307 CCATAGTATCTCAAGTCGCACTAGAT 59.850 42.308 0.00 0.00 30.84 1.98
618 796 5.431420 AGTATCTCAAGTCGCACTAGATG 57.569 43.478 0.00 0.00 29.21 2.90
619 797 5.126779 AGTATCTCAAGTCGCACTAGATGA 58.873 41.667 0.00 0.00 29.21 2.92
620 798 4.566545 ATCTCAAGTCGCACTAGATGAG 57.433 45.455 0.00 8.80 33.86 2.90
621 799 3.610911 TCTCAAGTCGCACTAGATGAGA 58.389 45.455 0.00 11.73 37.31 3.27
622 800 4.010349 TCTCAAGTCGCACTAGATGAGAA 58.990 43.478 12.68 3.11 36.94 2.87
623 801 4.642437 TCTCAAGTCGCACTAGATGAGAAT 59.358 41.667 12.68 0.00 36.94 2.40
624 802 4.676546 TCAAGTCGCACTAGATGAGAATG 58.323 43.478 0.00 2.57 39.02 2.67
625 803 4.158579 TCAAGTCGCACTAGATGAGAATGT 59.841 41.667 0.00 0.00 39.02 2.71
626 804 4.727507 AGTCGCACTAGATGAGAATGTT 57.272 40.909 0.00 0.00 39.02 2.71
627 805 5.078411 AGTCGCACTAGATGAGAATGTTT 57.922 39.130 0.00 0.00 39.02 2.83
628 806 5.105752 AGTCGCACTAGATGAGAATGTTTC 58.894 41.667 0.00 0.00 39.02 2.78
629 807 4.864806 GTCGCACTAGATGAGAATGTTTCA 59.135 41.667 0.00 0.00 39.02 2.69
630 808 5.348724 GTCGCACTAGATGAGAATGTTTCAA 59.651 40.000 0.00 0.00 39.02 2.69
631 809 5.578336 TCGCACTAGATGAGAATGTTTCAAG 59.422 40.000 0.00 0.00 33.72 3.02
632 810 5.578336 CGCACTAGATGAGAATGTTTCAAGA 59.422 40.000 0.00 0.00 0.00 3.02
633 811 6.257411 CGCACTAGATGAGAATGTTTCAAGAT 59.743 38.462 0.00 0.00 0.00 2.40
634 812 7.408123 GCACTAGATGAGAATGTTTCAAGATG 58.592 38.462 0.00 0.00 0.00 2.90
635 813 7.408123 CACTAGATGAGAATGTTTCAAGATGC 58.592 38.462 0.00 0.00 0.00 3.91
636 814 7.065443 CACTAGATGAGAATGTTTCAAGATGCA 59.935 37.037 0.00 0.00 0.00 3.96
637 815 6.829229 AGATGAGAATGTTTCAAGATGCAA 57.171 33.333 0.00 0.00 0.00 4.08
638 816 7.223260 AGATGAGAATGTTTCAAGATGCAAA 57.777 32.000 0.00 0.00 0.00 3.68
639 817 7.837863 AGATGAGAATGTTTCAAGATGCAAAT 58.162 30.769 0.00 0.00 0.00 2.32
640 818 8.963725 AGATGAGAATGTTTCAAGATGCAAATA 58.036 29.630 0.00 0.00 0.00 1.40
641 819 9.577110 GATGAGAATGTTTCAAGATGCAAATAA 57.423 29.630 0.00 0.00 0.00 1.40
642 820 8.746922 TGAGAATGTTTCAAGATGCAAATAAC 57.253 30.769 0.00 0.00 0.00 1.89
643 821 8.579006 TGAGAATGTTTCAAGATGCAAATAACT 58.421 29.630 0.00 0.00 0.00 2.24
644 822 9.415544 GAGAATGTTTCAAGATGCAAATAACTT 57.584 29.630 0.00 0.00 0.00 2.66
645 823 9.199982 AGAATGTTTCAAGATGCAAATAACTTG 57.800 29.630 0.00 2.67 40.37 3.16
719 897 9.347934 CTCGCTAGGATATAGTACAATTTTCAG 57.652 37.037 0.00 0.00 0.00 3.02
934 1113 4.247258 TGTGTTTCTTATGCGGTTACGAT 58.753 39.130 0.00 0.00 44.60 3.73
1031 1212 5.221263 TGTCAGAGACTGAACTTGTTAGGTC 60.221 44.000 2.98 8.96 42.46 3.85
1082 1263 1.002430 TGAGATTGCGGCTTCACTTCT 59.998 47.619 0.00 0.00 0.00 2.85
1083 1264 2.233676 TGAGATTGCGGCTTCACTTCTA 59.766 45.455 0.00 0.00 0.00 2.10
1084 1265 2.605366 GAGATTGCGGCTTCACTTCTAC 59.395 50.000 0.00 0.00 0.00 2.59
1085 1266 2.234908 AGATTGCGGCTTCACTTCTACT 59.765 45.455 0.00 0.00 0.00 2.57
1086 1267 2.080286 TTGCGGCTTCACTTCTACTC 57.920 50.000 0.00 0.00 0.00 2.59
1087 1268 0.246635 TGCGGCTTCACTTCTACTCC 59.753 55.000 0.00 0.00 0.00 3.85
1088 1269 0.460459 GCGGCTTCACTTCTACTCCC 60.460 60.000 0.00 0.00 0.00 4.30
1089 1270 1.187087 CGGCTTCACTTCTACTCCCT 58.813 55.000 0.00 0.00 0.00 4.20
1090 1271 1.135333 CGGCTTCACTTCTACTCCCTC 59.865 57.143 0.00 0.00 0.00 4.30
1091 1272 1.483004 GGCTTCACTTCTACTCCCTCC 59.517 57.143 0.00 0.00 0.00 4.30
1092 1273 1.135333 GCTTCACTTCTACTCCCTCCG 59.865 57.143 0.00 0.00 0.00 4.63
1093 1274 2.448453 CTTCACTTCTACTCCCTCCGT 58.552 52.381 0.00 0.00 0.00 4.69
1094 1275 2.599408 TCACTTCTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
1095 1276 2.444421 TCACTTCTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 0.00 3.95
1096 1277 1.477295 CACTTCTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
1097 1278 1.358445 ACTTCTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
1098 1279 2.579860 ACTTCTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 0.00 2.94
1099 1280 3.011032 ACTTCTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 0.00 2.69
1100 1281 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1101 1282 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1102 1283 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1103 1284 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1104 1285 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
1105 1286 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1106 1287 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1107 1288 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1108 1289 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1109 1290 4.820173 CCCTCCGTTCCTAAATATTTGTCC 59.180 45.833 11.05 0.00 0.00 4.02
1110 1291 5.397559 CCCTCCGTTCCTAAATATTTGTCCT 60.398 44.000 11.05 0.00 0.00 3.85
1111 1292 6.120220 CCTCCGTTCCTAAATATTTGTCCTT 58.880 40.000 11.05 0.00 0.00 3.36
1112 1293 6.602009 CCTCCGTTCCTAAATATTTGTCCTTT 59.398 38.462 11.05 0.00 0.00 3.11
1113 1294 7.122204 CCTCCGTTCCTAAATATTTGTCCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
1114 1295 9.169592 CTCCGTTCCTAAATATTTGTCCTTTTA 57.830 33.333 11.05 0.00 0.00 1.52
1115 1296 9.169592 TCCGTTCCTAAATATTTGTCCTTTTAG 57.830 33.333 11.05 0.00 33.47 1.85
1116 1297 9.169592 CCGTTCCTAAATATTTGTCCTTTTAGA 57.830 33.333 11.05 0.00 34.90 2.10
1128 1309 9.933723 ATTTGTCCTTTTAGAGATTTCAAATGG 57.066 29.630 0.00 0.00 33.66 3.16
1129 1310 8.704849 TTGTCCTTTTAGAGATTTCAAATGGA 57.295 30.769 0.00 9.53 34.75 3.41
1130 1311 8.110860 TGTCCTTTTAGAGATTTCAAATGGAC 57.889 34.615 22.10 22.10 46.45 4.02
1131 1312 7.944554 TGTCCTTTTAGAGATTTCAAATGGACT 59.055 33.333 25.02 1.39 46.43 3.85
1132 1313 9.449719 GTCCTTTTAGAGATTTCAAATGGACTA 57.550 33.333 21.88 0.00 44.76 2.59
1137 1318 9.958180 TTTAGAGATTTCAAATGGACTATCACA 57.042 29.630 0.00 0.00 0.00 3.58
1140 1321 9.553064 AGAGATTTCAAATGGACTATCACATAC 57.447 33.333 0.00 0.00 0.00 2.39
1141 1322 8.370493 AGATTTCAAATGGACTATCACATACG 57.630 34.615 0.00 0.00 0.00 3.06
1142 1323 6.918892 TTTCAAATGGACTATCACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
1143 1324 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
1144 1325 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
1145 1326 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
1147 1328 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
1148 1329 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
1149 1330 8.589701 AATGGACTATCACATACGGATGTATA 57.410 34.615 14.23 10.59 44.82 1.47
1150 1331 8.768501 ATGGACTATCACATACGGATGTATAT 57.231 34.615 14.23 12.50 44.82 0.86
1151 1332 9.862149 ATGGACTATCACATACGGATGTATATA 57.138 33.333 14.23 12.96 44.82 0.86
1152 1333 9.338622 TGGACTATCACATACGGATGTATATAG 57.661 37.037 26.27 26.27 44.82 1.31
1153 1334 9.557061 GGACTATCACATACGGATGTATATAGA 57.443 37.037 30.73 19.35 44.82 1.98
1155 1336 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
1187 1368 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1188 1369 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1189 1370 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1190 1371 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1191 1372 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1192 1373 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1193 1374 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1194 1375 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1195 1376 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1196 1377 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1197 1378 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1198 1379 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1199 1380 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
1200 1381 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
1201 1382 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
1202 1383 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
1203 1384 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
1204 1385 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
1205 1386 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
1206 1387 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
1207 1388 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
1208 1389 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
1209 1390 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1210 1391 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1211 1392 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
1212 1393 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
1213 1394 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
1214 1395 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1215 1396 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1216 1397 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
1217 1398 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
1218 1399 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
1219 1400 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
1220 1401 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
1221 1402 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
1222 1403 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
1223 1404 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
1224 1405 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
1225 1406 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
1238 1419 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1239 1420 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1240 1421 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1241 1422 8.319146 AGAAAGACAAATATTTAGGAACGGAGA 58.681 33.333 0.00 0.00 0.00 3.71
1242 1423 8.494016 AAAGACAAATATTTAGGAACGGAGAG 57.506 34.615 0.00 0.00 0.00 3.20
1243 1424 7.419711 AGACAAATATTTAGGAACGGAGAGA 57.580 36.000 0.00 0.00 0.00 3.10
1244 1425 7.493367 AGACAAATATTTAGGAACGGAGAGAG 58.507 38.462 0.00 0.00 0.00 3.20
1445 1626 3.788227 ATAAGAAGTGTGTGGCAAGGA 57.212 42.857 0.00 0.00 0.00 3.36
3309 3504 6.293735 CCTGCGATTTGTCAAACTAAAGGTAA 60.294 38.462 0.00 0.00 0.00 2.85
3310 3505 7.209471 TGCGATTTGTCAAACTAAAGGTAAT 57.791 32.000 0.00 0.00 0.00 1.89
3408 3604 1.066152 GCTCATTTCCAGGAATTCCGC 59.934 52.381 18.82 8.96 42.08 5.54
3411 3607 0.751643 ATTTCCAGGAATTCCGCGGG 60.752 55.000 27.83 23.67 42.08 6.13
3487 3683 5.632244 ACGTTGAAGTACTTGGTTTGTTT 57.368 34.783 14.14 0.00 0.00 2.83
3503 3699 2.489971 TGTTTGACTTTACTGGCTCCG 58.510 47.619 0.00 0.00 0.00 4.63
3623 3819 6.805016 AATATCTCCTGAAGCTGAGAAGAA 57.195 37.500 5.66 0.00 40.75 2.52
3651 3847 7.114754 TCAAAGGATGCAGAACTATTGATTCT 58.885 34.615 0.00 0.00 36.85 2.40
3671 3868 0.486879 TTGAGGCTTGTTTCCCCCAT 59.513 50.000 0.00 0.00 0.00 4.00
3875 4072 5.408079 ACCATTTTGGGTCATATCTGGAT 57.592 39.130 0.00 0.00 43.37 3.41
3947 4155 3.200605 TGCAAGGGAGAATTCTGAGCATA 59.799 43.478 14.00 0.00 0.00 3.14
3953 4161 4.636206 GGGAGAATTCTGAGCATAAACGTT 59.364 41.667 14.00 0.00 0.00 3.99
3997 4205 6.024552 TGACTAATTGTCTGGAAAATTGGC 57.975 37.500 8.52 3.13 45.54 4.52
3998 4206 5.538053 TGACTAATTGTCTGGAAAATTGGCA 59.462 36.000 8.52 5.14 45.54 4.92
4060 4268 0.179059 TCTTGCGCAGGTCAACTTCA 60.179 50.000 19.74 0.00 0.00 3.02
4079 4287 4.563140 TCACCACCCTAGTGTTTTATCC 57.437 45.455 0.00 0.00 42.88 2.59
4131 4339 3.681897 CCAATCTCTGAAGGAACAAGTCG 59.318 47.826 0.00 0.00 0.00 4.18
4136 4344 2.956333 TCTGAAGGAACAAGTCGAGACA 59.044 45.455 5.99 0.00 0.00 3.41
4152 4360 2.484264 GAGACAATTGGAAGGAACGGTG 59.516 50.000 10.83 0.00 0.00 4.94
4277 4515 8.837099 TCCCCATAATTTGATGTTGAAGTTAT 57.163 30.769 0.00 0.00 0.00 1.89
4369 4608 8.149647 AGAAAATGTTTGGCAGTTCATATTGAA 58.850 29.630 0.00 0.00 33.93 2.69
4382 4621 4.707563 TCATATTGAACTGCGAAAACGTG 58.292 39.130 0.00 0.00 0.00 4.49
4393 4632 6.768078 ACTGCGAAAACGTGTTATATTTAGG 58.232 36.000 0.00 0.00 0.00 2.69
4490 4729 1.464608 CACCTGACGCACCACTATTTG 59.535 52.381 0.00 0.00 0.00 2.32
4534 4782 3.057456 GTGCTAGAAGTTCTTCAGTCGGA 60.057 47.826 11.40 0.00 0.00 4.55
4559 4807 5.294306 TGTCATCTGTCAAGTTCAGTTTGTC 59.706 40.000 0.00 0.00 34.86 3.18
4565 4813 6.701841 TCTGTCAAGTTCAGTTTGTCTACATC 59.298 38.462 0.00 0.00 34.86 3.06
4587 4835 2.420022 GACTCTGCGGTAATGTGCAAAT 59.580 45.455 0.00 0.00 41.22 2.32
4595 4843 3.088532 GGTAATGTGCAAATGGAGGACA 58.911 45.455 0.00 0.00 41.55 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
1 2 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
2 3 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
3 4 3.744426 ACGACAAGTAATTTGGAACGGAG 59.256 43.478 0.00 0.00 41.25 4.63
4 5 3.731089 ACGACAAGTAATTTGGAACGGA 58.269 40.909 0.00 0.00 41.25 4.69
5 6 3.422603 CGACGACAAGTAATTTGGAACGG 60.423 47.826 0.00 0.00 41.25 4.44
6 7 3.182972 ACGACGACAAGTAATTTGGAACG 59.817 43.478 0.00 0.00 41.25 3.95
7 8 4.720530 ACGACGACAAGTAATTTGGAAC 57.279 40.909 0.00 0.00 41.25 3.62
8 9 5.738118 AAACGACGACAAGTAATTTGGAA 57.262 34.783 0.00 0.00 41.25 3.53
9 10 5.738118 AAAACGACGACAAGTAATTTGGA 57.262 34.783 0.00 0.00 41.25 3.53
10 11 6.652245 ACTAAAACGACGACAAGTAATTTGG 58.348 36.000 0.00 0.00 41.25 3.28
11 12 7.847078 TGAACTAAAACGACGACAAGTAATTTG 59.153 33.333 0.00 0.00 42.68 2.32
12 13 7.908230 TGAACTAAAACGACGACAAGTAATTT 58.092 30.769 0.00 0.00 0.00 1.82
13 14 7.467557 TGAACTAAAACGACGACAAGTAATT 57.532 32.000 0.00 0.00 0.00 1.40
14 15 7.467557 TTGAACTAAAACGACGACAAGTAAT 57.532 32.000 0.00 0.00 0.00 1.89
15 16 6.884096 TTGAACTAAAACGACGACAAGTAA 57.116 33.333 0.00 0.00 0.00 2.24
16 17 6.884096 TTTGAACTAAAACGACGACAAGTA 57.116 33.333 0.00 0.00 0.00 2.24
17 18 5.783100 TTTGAACTAAAACGACGACAAGT 57.217 34.783 0.00 0.00 0.00 3.16
18 19 7.305190 CCAAATTTGAACTAAAACGACGACAAG 60.305 37.037 19.86 0.00 0.00 3.16
19 20 6.469595 CCAAATTTGAACTAAAACGACGACAA 59.530 34.615 19.86 0.00 0.00 3.18
20 21 5.966503 CCAAATTTGAACTAAAACGACGACA 59.033 36.000 19.86 0.00 0.00 4.35
21 22 6.193761 TCCAAATTTGAACTAAAACGACGAC 58.806 36.000 19.86 0.00 0.00 4.34
22 23 6.360844 TCCAAATTTGAACTAAAACGACGA 57.639 33.333 19.86 0.62 0.00 4.20
23 24 6.689669 AGTTCCAAATTTGAACTAAAACGACG 59.310 34.615 23.09 0.00 37.39 5.12
24 25 7.980742 AGTTCCAAATTTGAACTAAAACGAC 57.019 32.000 23.09 0.46 37.39 4.34
30 31 9.505995 GTCGTTTTAGTTCCAAATTTGAACTAA 57.494 29.630 28.70 28.70 44.58 2.24
31 32 7.851963 CGTCGTTTTAGTTCCAAATTTGAACTA 59.148 33.333 24.14 24.14 39.53 2.24
32 33 6.689669 CGTCGTTTTAGTTCCAAATTTGAACT 59.310 34.615 25.45 25.45 41.41 3.01
33 34 6.687958 TCGTCGTTTTAGTTCCAAATTTGAAC 59.312 34.615 19.86 18.79 0.00 3.18
34 35 6.687958 GTCGTCGTTTTAGTTCCAAATTTGAA 59.312 34.615 19.86 9.02 0.00 2.69
35 36 6.183360 TGTCGTCGTTTTAGTTCCAAATTTGA 60.183 34.615 19.86 3.14 0.00 2.69
36 37 5.966503 TGTCGTCGTTTTAGTTCCAAATTTG 59.033 36.000 11.40 11.40 0.00 2.32
37 38 6.121613 TGTCGTCGTTTTAGTTCCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
38 39 5.738118 TGTCGTCGTTTTAGTTCCAAATT 57.262 34.783 0.00 0.00 0.00 1.82
39 40 5.295045 ACTTGTCGTCGTTTTAGTTCCAAAT 59.705 36.000 0.00 0.00 0.00 2.32
40 41 4.630940 ACTTGTCGTCGTTTTAGTTCCAAA 59.369 37.500 0.00 0.00 0.00 3.28
41 42 4.183101 ACTTGTCGTCGTTTTAGTTCCAA 58.817 39.130 0.00 0.00 0.00 3.53
42 43 3.784338 ACTTGTCGTCGTTTTAGTTCCA 58.216 40.909 0.00 0.00 0.00 3.53
43 44 5.888412 TTACTTGTCGTCGTTTTAGTTCC 57.112 39.130 0.00 0.00 0.00 3.62
44 45 7.319615 CCAAATTACTTGTCGTCGTTTTAGTTC 59.680 37.037 0.00 0.00 32.65 3.01
45 46 7.011295 TCCAAATTACTTGTCGTCGTTTTAGTT 59.989 33.333 0.00 0.00 32.65 2.24
46 47 6.479660 TCCAAATTACTTGTCGTCGTTTTAGT 59.520 34.615 0.00 0.00 32.65 2.24
47 48 6.879962 TCCAAATTACTTGTCGTCGTTTTAG 58.120 36.000 0.00 0.00 32.65 1.85
48 49 6.841443 TCCAAATTACTTGTCGTCGTTTTA 57.159 33.333 0.00 0.00 32.65 1.52
49 50 5.738118 TCCAAATTACTTGTCGTCGTTTT 57.262 34.783 0.00 0.00 32.65 2.43
50 51 5.504392 GTTCCAAATTACTTGTCGTCGTTT 58.496 37.500 0.00 0.00 32.65 3.60
51 52 4.318263 CGTTCCAAATTACTTGTCGTCGTT 60.318 41.667 0.00 0.00 32.65 3.85
52 53 3.182972 CGTTCCAAATTACTTGTCGTCGT 59.817 43.478 0.00 0.00 32.65 4.34
53 54 3.422603 CCGTTCCAAATTACTTGTCGTCG 60.423 47.826 0.00 0.00 32.65 5.12
54 55 3.742369 TCCGTTCCAAATTACTTGTCGTC 59.258 43.478 0.00 0.00 32.65 4.20
55 56 3.731089 TCCGTTCCAAATTACTTGTCGT 58.269 40.909 0.00 0.00 32.65 4.34
56 57 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
57 58 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
58 59 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
59 60 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
60 61 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
61 62 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
62 63 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
63 64 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
64 65 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
65 66 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
66 67 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
67 68 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
68 69 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
69 70 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
70 71 0.535335 TGCATGTACTCCCTCCGTTC 59.465 55.000 0.00 0.00 0.00 3.95
71 72 0.981183 TTGCATGTACTCCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
72 73 0.981183 TTTGCATGTACTCCCTCCGT 59.019 50.000 0.00 0.00 0.00 4.69
73 74 1.207089 TCTTTGCATGTACTCCCTCCG 59.793 52.381 0.00 0.00 0.00 4.63
74 75 3.209410 CATCTTTGCATGTACTCCCTCC 58.791 50.000 0.00 0.00 0.00 4.30
75 76 3.209410 CCATCTTTGCATGTACTCCCTC 58.791 50.000 0.00 0.00 0.00 4.30
76 77 2.092212 CCCATCTTTGCATGTACTCCCT 60.092 50.000 0.00 0.00 0.00 4.20
77 78 2.301346 CCCATCTTTGCATGTACTCCC 58.699 52.381 0.00 0.00 0.00 4.30
78 79 2.092429 TCCCCATCTTTGCATGTACTCC 60.092 50.000 0.00 0.00 0.00 3.85
79 80 3.281727 TCCCCATCTTTGCATGTACTC 57.718 47.619 0.00 0.00 0.00 2.59
80 81 3.737559 TTCCCCATCTTTGCATGTACT 57.262 42.857 0.00 0.00 0.00 2.73
81 82 6.265196 TGATTATTCCCCATCTTTGCATGTAC 59.735 38.462 0.00 0.00 0.00 2.90
187 189 6.338937 AGATATCGGTGTTTCCAGAACTAAC 58.661 40.000 0.00 0.00 35.57 2.34
311 316 9.649167 GTAGTTACCTGCTTCTATTTCAGTTTA 57.351 33.333 0.00 0.00 0.00 2.01
312 317 8.154856 TGTAGTTACCTGCTTCTATTTCAGTTT 58.845 33.333 0.00 0.00 0.00 2.66
313 318 7.603024 GTGTAGTTACCTGCTTCTATTTCAGTT 59.397 37.037 0.00 0.00 0.00 3.16
452 457 8.281212 AGCACAAGTCTTCTTTCTTTCTTTAA 57.719 30.769 0.00 0.00 0.00 1.52
474 652 5.123820 CCTTTTCGATTGGTTTCTGATAGCA 59.876 40.000 0.00 0.00 0.00 3.49
475 653 5.354234 TCCTTTTCGATTGGTTTCTGATAGC 59.646 40.000 0.00 0.00 0.00 2.97
476 654 6.818644 TCTCCTTTTCGATTGGTTTCTGATAG 59.181 38.462 0.00 0.00 0.00 2.08
477 655 6.707290 TCTCCTTTTCGATTGGTTTCTGATA 58.293 36.000 0.00 0.00 0.00 2.15
478 656 5.560724 TCTCCTTTTCGATTGGTTTCTGAT 58.439 37.500 0.00 0.00 0.00 2.90
479 657 4.968259 TCTCCTTTTCGATTGGTTTCTGA 58.032 39.130 0.00 0.00 0.00 3.27
480 658 5.335191 CCTTCTCCTTTTCGATTGGTTTCTG 60.335 44.000 0.00 0.00 0.00 3.02
481 659 4.762251 CCTTCTCCTTTTCGATTGGTTTCT 59.238 41.667 0.00 0.00 0.00 2.52
482 660 4.616143 GCCTTCTCCTTTTCGATTGGTTTC 60.616 45.833 0.00 0.00 0.00 2.78
483 661 3.255888 GCCTTCTCCTTTTCGATTGGTTT 59.744 43.478 0.00 0.00 0.00 3.27
484 662 2.820197 GCCTTCTCCTTTTCGATTGGTT 59.180 45.455 0.00 0.00 0.00 3.67
485 663 2.224769 TGCCTTCTCCTTTTCGATTGGT 60.225 45.455 0.00 0.00 0.00 3.67
486 664 2.436417 TGCCTTCTCCTTTTCGATTGG 58.564 47.619 0.00 0.00 0.00 3.16
487 665 5.818136 TTATGCCTTCTCCTTTTCGATTG 57.182 39.130 0.00 0.00 0.00 2.67
488 666 6.799512 CATTTATGCCTTCTCCTTTTCGATT 58.200 36.000 0.00 0.00 0.00 3.34
489 667 6.382869 CATTTATGCCTTCTCCTTTTCGAT 57.617 37.500 0.00 0.00 0.00 3.59
490 668 5.818136 CATTTATGCCTTCTCCTTTTCGA 57.182 39.130 0.00 0.00 0.00 3.71
505 683 4.641541 TCAAGTCCATCCACTGCATTTATG 59.358 41.667 0.00 0.00 0.00 1.90
506 684 4.641989 GTCAAGTCCATCCACTGCATTTAT 59.358 41.667 0.00 0.00 0.00 1.40
507 685 4.009675 GTCAAGTCCATCCACTGCATTTA 58.990 43.478 0.00 0.00 0.00 1.40
508 686 2.821969 GTCAAGTCCATCCACTGCATTT 59.178 45.455 0.00 0.00 0.00 2.32
509 687 2.224843 TGTCAAGTCCATCCACTGCATT 60.225 45.455 0.00 0.00 0.00 3.56
510 688 1.352017 TGTCAAGTCCATCCACTGCAT 59.648 47.619 0.00 0.00 0.00 3.96
511 689 0.764271 TGTCAAGTCCATCCACTGCA 59.236 50.000 0.00 0.00 0.00 4.41
512 690 2.119801 ATGTCAAGTCCATCCACTGC 57.880 50.000 0.00 0.00 0.00 4.40
513 691 4.095483 GCTTAATGTCAAGTCCATCCACTG 59.905 45.833 0.00 0.00 0.00 3.66
514 692 4.018960 AGCTTAATGTCAAGTCCATCCACT 60.019 41.667 0.00 0.00 0.00 4.00
515 693 4.095483 CAGCTTAATGTCAAGTCCATCCAC 59.905 45.833 0.00 0.00 0.00 4.02
516 694 4.264253 CAGCTTAATGTCAAGTCCATCCA 58.736 43.478 0.00 0.00 0.00 3.41
517 695 3.065925 GCAGCTTAATGTCAAGTCCATCC 59.934 47.826 0.00 0.00 0.00 3.51
518 696 3.944015 AGCAGCTTAATGTCAAGTCCATC 59.056 43.478 0.00 0.00 0.00 3.51
519 697 3.960571 AGCAGCTTAATGTCAAGTCCAT 58.039 40.909 0.00 0.00 0.00 3.41
520 698 3.423539 AGCAGCTTAATGTCAAGTCCA 57.576 42.857 0.00 0.00 0.00 4.02
521 699 4.022849 ACAAAGCAGCTTAATGTCAAGTCC 60.023 41.667 8.45 0.00 0.00 3.85
522 700 5.113502 ACAAAGCAGCTTAATGTCAAGTC 57.886 39.130 8.45 0.00 0.00 3.01
523 701 5.520376 AACAAAGCAGCTTAATGTCAAGT 57.480 34.783 8.45 0.00 0.00 3.16
524 702 6.902341 TCTAACAAAGCAGCTTAATGTCAAG 58.098 36.000 8.45 11.01 0.00 3.02
525 703 6.875948 TCTAACAAAGCAGCTTAATGTCAA 57.124 33.333 8.45 1.98 0.00 3.18
526 704 8.737168 ATATCTAACAAAGCAGCTTAATGTCA 57.263 30.769 8.45 0.00 0.00 3.58
528 706 9.057089 GGTATATCTAACAAAGCAGCTTAATGT 57.943 33.333 8.45 7.40 0.00 2.71
529 707 9.056005 TGGTATATCTAACAAAGCAGCTTAATG 57.944 33.333 8.45 6.69 0.00 1.90
530 708 9.277783 CTGGTATATCTAACAAAGCAGCTTAAT 57.722 33.333 8.45 0.15 0.00 1.40
531 709 7.715249 CCTGGTATATCTAACAAAGCAGCTTAA 59.285 37.037 8.45 0.00 35.03 1.85
532 710 7.070696 TCCTGGTATATCTAACAAAGCAGCTTA 59.929 37.037 8.45 0.00 35.03 3.09
533 711 6.058183 CCTGGTATATCTAACAAAGCAGCTT 58.942 40.000 0.21 0.21 35.03 3.74
534 712 5.366768 TCCTGGTATATCTAACAAAGCAGCT 59.633 40.000 0.00 0.00 35.03 4.24
535 713 5.467063 GTCCTGGTATATCTAACAAAGCAGC 59.533 44.000 0.00 0.00 35.03 5.25
536 714 5.692204 CGTCCTGGTATATCTAACAAAGCAG 59.308 44.000 0.00 0.00 35.88 4.24
537 715 5.361571 TCGTCCTGGTATATCTAACAAAGCA 59.638 40.000 0.00 0.00 0.00 3.91
538 716 5.839621 TCGTCCTGGTATATCTAACAAAGC 58.160 41.667 0.00 0.00 0.00 3.51
539 717 6.924060 CCTTCGTCCTGGTATATCTAACAAAG 59.076 42.308 0.00 0.00 0.00 2.77
540 718 6.381994 ACCTTCGTCCTGGTATATCTAACAAA 59.618 38.462 0.00 0.00 34.36 2.83
541 719 5.895534 ACCTTCGTCCTGGTATATCTAACAA 59.104 40.000 0.00 0.00 34.36 2.83
542 720 5.452255 ACCTTCGTCCTGGTATATCTAACA 58.548 41.667 0.00 0.00 34.36 2.41
543 721 6.402456 AACCTTCGTCCTGGTATATCTAAC 57.598 41.667 0.00 0.00 35.17 2.34
544 722 8.537728 TTTAACCTTCGTCCTGGTATATCTAA 57.462 34.615 0.00 0.00 35.17 2.10
545 723 8.537728 TTTTAACCTTCGTCCTGGTATATCTA 57.462 34.615 0.00 0.00 35.17 1.98
546 724 7.427989 TTTTAACCTTCGTCCTGGTATATCT 57.572 36.000 0.00 0.00 35.17 1.98
547 725 7.929785 TGATTTTAACCTTCGTCCTGGTATATC 59.070 37.037 0.00 0.00 35.17 1.63
548 726 7.798071 TGATTTTAACCTTCGTCCTGGTATAT 58.202 34.615 0.00 0.00 35.17 0.86
549 727 7.124599 TCTGATTTTAACCTTCGTCCTGGTATA 59.875 37.037 0.00 0.00 35.17 1.47
550 728 6.057321 TGATTTTAACCTTCGTCCTGGTAT 57.943 37.500 0.00 0.00 35.17 2.73
551 729 5.246656 TCTGATTTTAACCTTCGTCCTGGTA 59.753 40.000 0.00 0.00 35.17 3.25
552 730 4.041198 TCTGATTTTAACCTTCGTCCTGGT 59.959 41.667 0.00 0.00 38.35 4.00
553 731 4.575885 TCTGATTTTAACCTTCGTCCTGG 58.424 43.478 0.00 0.00 0.00 4.45
554 732 4.631813 CCTCTGATTTTAACCTTCGTCCTG 59.368 45.833 0.00 0.00 0.00 3.86
555 733 4.323562 CCCTCTGATTTTAACCTTCGTCCT 60.324 45.833 0.00 0.00 0.00 3.85
556 734 3.939592 CCCTCTGATTTTAACCTTCGTCC 59.060 47.826 0.00 0.00 0.00 4.79
557 735 3.374367 GCCCTCTGATTTTAACCTTCGTC 59.626 47.826 0.00 0.00 0.00 4.20
558 736 3.009143 AGCCCTCTGATTTTAACCTTCGT 59.991 43.478 0.00 0.00 0.00 3.85
559 737 3.610911 AGCCCTCTGATTTTAACCTTCG 58.389 45.455 0.00 0.00 0.00 3.79
560 738 5.984695 AAAGCCCTCTGATTTTAACCTTC 57.015 39.130 0.00 0.00 0.00 3.46
561 739 6.780522 TGTTAAAGCCCTCTGATTTTAACCTT 59.219 34.615 13.13 0.00 41.68 3.50
562 740 6.311735 TGTTAAAGCCCTCTGATTTTAACCT 58.688 36.000 13.13 0.00 41.68 3.50
563 741 6.584185 TGTTAAAGCCCTCTGATTTTAACC 57.416 37.500 13.13 1.35 41.68 2.85
564 742 7.826690 TGATGTTAAAGCCCTCTGATTTTAAC 58.173 34.615 10.25 10.25 42.23 2.01
565 743 8.469200 CATGATGTTAAAGCCCTCTGATTTTAA 58.531 33.333 0.00 0.00 0.00 1.52
566 744 7.416664 GCATGATGTTAAAGCCCTCTGATTTTA 60.417 37.037 0.00 0.00 0.00 1.52
567 745 6.628844 GCATGATGTTAAAGCCCTCTGATTTT 60.629 38.462 0.00 0.00 0.00 1.82
568 746 5.163478 GCATGATGTTAAAGCCCTCTGATTT 60.163 40.000 0.00 0.00 0.00 2.17
569 747 4.340381 GCATGATGTTAAAGCCCTCTGATT 59.660 41.667 0.00 0.00 0.00 2.57
570 748 3.887716 GCATGATGTTAAAGCCCTCTGAT 59.112 43.478 0.00 0.00 0.00 2.90
571 749 3.282021 GCATGATGTTAAAGCCCTCTGA 58.718 45.455 0.00 0.00 0.00 3.27
572 750 2.360165 GGCATGATGTTAAAGCCCTCTG 59.640 50.000 0.00 0.00 39.42 3.35
573 751 2.025037 TGGCATGATGTTAAAGCCCTCT 60.025 45.455 0.00 0.00 44.60 3.69
574 752 2.378038 TGGCATGATGTTAAAGCCCTC 58.622 47.619 0.00 0.00 44.60 4.30
575 753 2.530460 TGGCATGATGTTAAAGCCCT 57.470 45.000 0.00 0.00 44.60 5.19
576 754 3.891366 ACTATGGCATGATGTTAAAGCCC 59.109 43.478 10.98 0.00 44.60 5.19
577 755 6.656693 AGATACTATGGCATGATGTTAAAGCC 59.343 38.462 10.98 0.00 45.41 4.35
578 756 7.388776 TGAGATACTATGGCATGATGTTAAAGC 59.611 37.037 10.98 0.00 0.00 3.51
579 757 8.837788 TGAGATACTATGGCATGATGTTAAAG 57.162 34.615 10.98 0.00 0.00 1.85
580 758 9.276590 CTTGAGATACTATGGCATGATGTTAAA 57.723 33.333 10.98 0.00 0.00 1.52
581 759 8.432013 ACTTGAGATACTATGGCATGATGTTAA 58.568 33.333 10.98 2.32 0.00 2.01
582 760 7.966812 ACTTGAGATACTATGGCATGATGTTA 58.033 34.615 10.98 0.00 0.00 2.41
583 761 6.835174 ACTTGAGATACTATGGCATGATGTT 58.165 36.000 10.98 0.00 0.00 2.71
584 762 6.430962 ACTTGAGATACTATGGCATGATGT 57.569 37.500 10.98 8.84 0.00 3.06
585 763 5.575995 CGACTTGAGATACTATGGCATGATG 59.424 44.000 10.98 2.87 0.00 3.07
586 764 5.718146 CGACTTGAGATACTATGGCATGAT 58.282 41.667 10.98 0.36 0.00 2.45
587 765 4.559502 GCGACTTGAGATACTATGGCATGA 60.560 45.833 10.98 0.00 0.00 3.07
588 766 3.677121 GCGACTTGAGATACTATGGCATG 59.323 47.826 10.98 2.76 0.00 4.06
589 767 3.321968 TGCGACTTGAGATACTATGGCAT 59.678 43.478 4.88 4.88 0.00 4.40
590 768 2.693074 TGCGACTTGAGATACTATGGCA 59.307 45.455 0.00 0.00 0.00 4.92
591 769 3.053455 GTGCGACTTGAGATACTATGGC 58.947 50.000 0.00 0.00 0.00 4.40
592 770 4.576216 AGTGCGACTTGAGATACTATGG 57.424 45.455 0.00 0.00 0.00 2.74
593 771 6.546972 TCTAGTGCGACTTGAGATACTATG 57.453 41.667 0.00 0.00 0.00 2.23
594 772 6.937465 TCATCTAGTGCGACTTGAGATACTAT 59.063 38.462 0.00 0.00 33.79 2.12
595 773 6.289064 TCATCTAGTGCGACTTGAGATACTA 58.711 40.000 0.00 0.00 33.79 1.82
596 774 5.126779 TCATCTAGTGCGACTTGAGATACT 58.873 41.667 0.00 0.00 33.79 2.12
597 775 5.237561 TCTCATCTAGTGCGACTTGAGATAC 59.762 44.000 11.73 0.00 35.72 2.24
598 776 5.368989 TCTCATCTAGTGCGACTTGAGATA 58.631 41.667 11.73 0.00 35.72 1.98
599 777 4.203226 TCTCATCTAGTGCGACTTGAGAT 58.797 43.478 11.73 5.84 35.72 2.75
600 778 3.610911 TCTCATCTAGTGCGACTTGAGA 58.389 45.455 11.73 11.73 37.31 3.27
601 779 4.362932 TTCTCATCTAGTGCGACTTGAG 57.637 45.455 8.80 8.80 33.79 3.02
602 780 4.158579 ACATTCTCATCTAGTGCGACTTGA 59.841 41.667 0.00 0.00 34.71 3.02
603 781 4.428209 ACATTCTCATCTAGTGCGACTTG 58.572 43.478 0.00 0.00 0.00 3.16
604 782 4.727507 ACATTCTCATCTAGTGCGACTT 57.272 40.909 0.00 0.00 0.00 3.01
605 783 4.727507 AACATTCTCATCTAGTGCGACT 57.272 40.909 0.00 0.00 0.00 4.18
606 784 4.864806 TGAAACATTCTCATCTAGTGCGAC 59.135 41.667 0.00 0.00 0.00 5.19
607 785 5.072040 TGAAACATTCTCATCTAGTGCGA 57.928 39.130 0.00 0.00 0.00 5.10
608 786 5.578336 TCTTGAAACATTCTCATCTAGTGCG 59.422 40.000 0.00 0.00 0.00 5.34
609 787 6.974932 TCTTGAAACATTCTCATCTAGTGC 57.025 37.500 0.00 0.00 0.00 4.40
610 788 7.065443 TGCATCTTGAAACATTCTCATCTAGTG 59.935 37.037 0.00 0.00 0.00 2.74
611 789 7.108194 TGCATCTTGAAACATTCTCATCTAGT 58.892 34.615 0.00 0.00 0.00 2.57
612 790 7.549615 TGCATCTTGAAACATTCTCATCTAG 57.450 36.000 0.00 0.00 0.00 2.43
613 791 7.926674 TTGCATCTTGAAACATTCTCATCTA 57.073 32.000 0.00 0.00 0.00 1.98
614 792 6.829229 TTGCATCTTGAAACATTCTCATCT 57.171 33.333 0.00 0.00 0.00 2.90
615 793 9.577110 TTATTTGCATCTTGAAACATTCTCATC 57.423 29.630 0.00 0.00 0.00 2.92
616 794 9.362539 GTTATTTGCATCTTGAAACATTCTCAT 57.637 29.630 0.00 0.00 0.00 2.90
617 795 8.579006 AGTTATTTGCATCTTGAAACATTCTCA 58.421 29.630 0.00 0.00 0.00 3.27
618 796 8.976986 AGTTATTTGCATCTTGAAACATTCTC 57.023 30.769 0.00 0.00 0.00 2.87
619 797 9.199982 CAAGTTATTTGCATCTTGAAACATTCT 57.800 29.630 0.00 0.00 39.39 2.40
620 798 8.981647 ACAAGTTATTTGCATCTTGAAACATTC 58.018 29.630 16.74 0.00 40.59 2.67
621 799 8.767085 CACAAGTTATTTGCATCTTGAAACATT 58.233 29.630 16.74 1.49 40.59 2.71
622 800 7.927629 ACACAAGTTATTTGCATCTTGAAACAT 59.072 29.630 16.74 0.00 40.59 2.71
623 801 7.264221 ACACAAGTTATTTGCATCTTGAAACA 58.736 30.769 16.74 0.00 40.59 2.83
624 802 7.698836 ACACAAGTTATTTGCATCTTGAAAC 57.301 32.000 16.74 5.44 40.59 2.78
625 803 9.462174 CTAACACAAGTTATTTGCATCTTGAAA 57.538 29.630 16.74 0.00 39.36 2.69
626 804 7.594758 GCTAACACAAGTTATTTGCATCTTGAA 59.405 33.333 16.74 0.00 39.36 2.69
627 805 7.083858 GCTAACACAAGTTATTTGCATCTTGA 58.916 34.615 16.74 0.00 39.36 3.02
628 806 6.308766 GGCTAACACAAGTTATTTGCATCTTG 59.691 38.462 11.59 11.59 39.36 3.02
629 807 6.015519 TGGCTAACACAAGTTATTTGCATCTT 60.016 34.615 0.00 0.00 39.36 2.40
630 808 5.476599 TGGCTAACACAAGTTATTTGCATCT 59.523 36.000 0.00 0.00 39.36 2.90
631 809 5.708948 TGGCTAACACAAGTTATTTGCATC 58.291 37.500 0.00 0.00 39.36 3.91
632 810 5.720371 TGGCTAACACAAGTTATTTGCAT 57.280 34.783 0.00 0.00 39.36 3.96
633 811 5.720371 ATGGCTAACACAAGTTATTTGCA 57.280 34.783 0.00 0.00 39.36 4.08
634 812 6.389906 AGAATGGCTAACACAAGTTATTTGC 58.610 36.000 0.00 0.00 39.36 3.68
635 813 7.867403 ACAAGAATGGCTAACACAAGTTATTTG 59.133 33.333 0.00 0.00 39.36 2.32
636 814 7.951591 ACAAGAATGGCTAACACAAGTTATTT 58.048 30.769 0.00 0.00 39.36 1.40
637 815 7.524717 ACAAGAATGGCTAACACAAGTTATT 57.475 32.000 0.00 0.00 39.36 1.40
638 816 7.524717 AACAAGAATGGCTAACACAAGTTAT 57.475 32.000 0.00 0.00 39.36 1.89
639 817 6.952773 AACAAGAATGGCTAACACAAGTTA 57.047 33.333 0.00 0.00 39.15 2.24
640 818 5.852282 AACAAGAATGGCTAACACAAGTT 57.148 34.783 0.00 0.00 41.74 2.66
641 819 5.852282 AAACAAGAATGGCTAACACAAGT 57.148 34.783 0.00 0.00 0.00 3.16
642 820 6.019640 CACAAAACAAGAATGGCTAACACAAG 60.020 38.462 0.00 0.00 0.00 3.16
643 821 5.809562 CACAAAACAAGAATGGCTAACACAA 59.190 36.000 0.00 0.00 0.00 3.33
644 822 5.105554 ACACAAAACAAGAATGGCTAACACA 60.106 36.000 0.00 0.00 0.00 3.72
645 823 5.348164 ACACAAAACAAGAATGGCTAACAC 58.652 37.500 0.00 0.00 0.00 3.32
719 897 2.159043 TGCTAGATGCTAGGCTCACAAC 60.159 50.000 0.00 0.00 43.37 3.32
934 1113 3.305950 GCAAATTAGGCACATTGTCACCA 60.306 43.478 7.86 0.00 0.00 4.17
1082 1263 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1083 1264 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1084 1265 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1085 1266 5.397109 GGACAAATATTTAGGAACGGAGGGA 60.397 44.000 0.00 0.00 0.00 4.20
1086 1267 4.820173 GGACAAATATTTAGGAACGGAGGG 59.180 45.833 0.00 0.00 0.00 4.30
1087 1268 5.681639 AGGACAAATATTTAGGAACGGAGG 58.318 41.667 0.00 0.00 0.00 4.30
1088 1269 7.625828 AAAGGACAAATATTTAGGAACGGAG 57.374 36.000 0.00 0.00 0.00 4.63
1089 1270 9.169592 CTAAAAGGACAAATATTTAGGAACGGA 57.830 33.333 0.00 0.00 33.69 4.69
1090 1271 9.169592 TCTAAAAGGACAAATATTTAGGAACGG 57.830 33.333 0.00 0.00 36.48 4.44
1102 1283 9.933723 CCATTTGAAATCTCTAAAAGGACAAAT 57.066 29.630 0.00 0.00 36.38 2.32
1103 1284 9.142014 TCCATTTGAAATCTCTAAAAGGACAAA 57.858 29.630 0.00 0.00 0.00 2.83
1104 1285 8.576442 GTCCATTTGAAATCTCTAAAAGGACAA 58.424 33.333 14.70 0.00 40.75 3.18
1105 1286 7.944554 AGTCCATTTGAAATCTCTAAAAGGACA 59.055 33.333 19.19 0.00 41.93 4.02
1106 1287 8.341892 AGTCCATTTGAAATCTCTAAAAGGAC 57.658 34.615 12.72 12.72 41.02 3.85
1111 1292 9.958180 TGTGATAGTCCATTTGAAATCTCTAAA 57.042 29.630 0.00 0.00 0.00 1.85
1114 1295 9.553064 GTATGTGATAGTCCATTTGAAATCTCT 57.447 33.333 0.00 0.00 0.00 3.10
1115 1296 8.491152 CGTATGTGATAGTCCATTTGAAATCTC 58.509 37.037 0.00 0.00 0.00 2.75
1116 1297 7.442364 CCGTATGTGATAGTCCATTTGAAATCT 59.558 37.037 0.00 0.00 0.00 2.40
1117 1298 7.441157 TCCGTATGTGATAGTCCATTTGAAATC 59.559 37.037 0.00 0.00 0.00 2.17
1118 1299 7.279615 TCCGTATGTGATAGTCCATTTGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
1119 1300 6.645306 TCCGTATGTGATAGTCCATTTGAAA 58.355 36.000 0.00 0.00 0.00 2.69
1120 1301 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
1121 1302 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
1122 1303 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
1123 1304 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
1124 1305 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
1125 1306 8.768501 ATATACATCCGTATGTGATAGTCCAT 57.231 34.615 3.56 0.00 45.99 3.41
1126 1307 9.338622 CTATATACATCCGTATGTGATAGTCCA 57.661 37.037 3.56 0.00 45.99 4.02
1127 1308 9.557061 TCTATATACATCCGTATGTGATAGTCC 57.443 37.037 17.08 0.00 45.99 3.85
1129 1310 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
1165 1346 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1166 1347 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1167 1348 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1168 1349 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1169 1350 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1170 1351 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1171 1352 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1172 1353 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1173 1354 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1174 1355 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1175 1356 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1176 1357 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
1177 1358 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1178 1359 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
1179 1360 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1180 1361 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1181 1362 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
1182 1363 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
1183 1364 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1184 1365 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
1185 1366 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1186 1367 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1187 1368 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
1188 1369 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1189 1370 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1191 1372 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
1192 1373 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
1193 1374 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
1194 1375 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
1195 1376 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
1196 1377 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
1197 1378 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
1198 1379 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
1199 1380 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
1212 1393 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1213 1394 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1214 1395 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1215 1396 8.319146 TCTCCGTTCCTAAATATTTGTCTTTCT 58.681 33.333 11.05 0.00 0.00 2.52
1216 1397 8.488651 TCTCCGTTCCTAAATATTTGTCTTTC 57.511 34.615 11.05 0.00 0.00 2.62
1217 1398 8.319146 TCTCTCCGTTCCTAAATATTTGTCTTT 58.681 33.333 11.05 0.00 0.00 2.52
1218 1399 7.848128 TCTCTCCGTTCCTAAATATTTGTCTT 58.152 34.615 11.05 0.00 0.00 3.01
1219 1400 7.124448 ACTCTCTCCGTTCCTAAATATTTGTCT 59.876 37.037 11.05 0.00 0.00 3.41
1220 1401 7.266400 ACTCTCTCCGTTCCTAAATATTTGTC 58.734 38.462 11.05 0.00 0.00 3.18
1221 1402 7.184067 ACTCTCTCCGTTCCTAAATATTTGT 57.816 36.000 11.05 0.00 0.00 2.83
1222 1403 8.414778 ACTACTCTCTCCGTTCCTAAATATTTG 58.585 37.037 11.05 1.40 0.00 2.32
1223 1404 8.536340 ACTACTCTCTCCGTTCCTAAATATTT 57.464 34.615 5.89 5.89 0.00 1.40
1224 1405 9.810870 ATACTACTCTCTCCGTTCCTAAATATT 57.189 33.333 0.00 0.00 0.00 1.28
1225 1406 9.452287 GATACTACTCTCTCCGTTCCTAAATAT 57.548 37.037 0.00 0.00 0.00 1.28
1226 1407 8.435187 TGATACTACTCTCTCCGTTCCTAAATA 58.565 37.037 0.00 0.00 0.00 1.40
1227 1408 7.288560 TGATACTACTCTCTCCGTTCCTAAAT 58.711 38.462 0.00 0.00 0.00 1.40
1228 1409 6.656902 TGATACTACTCTCTCCGTTCCTAAA 58.343 40.000 0.00 0.00 0.00 1.85
1229 1410 6.244552 TGATACTACTCTCTCCGTTCCTAA 57.755 41.667 0.00 0.00 0.00 2.69
1230 1411 5.883685 TGATACTACTCTCTCCGTTCCTA 57.116 43.478 0.00 0.00 0.00 2.94
1231 1412 4.774660 TGATACTACTCTCTCCGTTCCT 57.225 45.455 0.00 0.00 0.00 3.36
1232 1413 6.879993 TGATATGATACTACTCTCTCCGTTCC 59.120 42.308 0.00 0.00 0.00 3.62
1233 1414 7.908827 TGATATGATACTACTCTCTCCGTTC 57.091 40.000 0.00 0.00 0.00 3.95
1234 1415 7.940137 AGTTGATATGATACTACTCTCTCCGTT 59.060 37.037 0.00 0.00 0.00 4.44
1235 1416 7.455058 AGTTGATATGATACTACTCTCTCCGT 58.545 38.462 0.00 0.00 0.00 4.69
1236 1417 7.915293 AGTTGATATGATACTACTCTCTCCG 57.085 40.000 0.00 0.00 0.00 4.63
1420 1601 6.992123 TCCTTGCCACACACTTCTTATATATG 59.008 38.462 0.00 0.00 0.00 1.78
1565 1758 1.947212 GCCCGACCAAGAAAATACGGT 60.947 52.381 0.00 0.00 38.92 4.83
3150 3345 4.840401 TCAGAAATTCATGTTCTACGCG 57.160 40.909 3.53 3.53 33.53 6.01
3309 3504 4.033358 GCAAGTCGAAGATTTCATCGTCAT 59.967 41.667 5.28 0.00 40.67 3.06
3310 3505 3.367932 GCAAGTCGAAGATTTCATCGTCA 59.632 43.478 5.28 0.00 40.67 4.35
3408 3604 0.240945 GAAATGCACTGTTGGTCCCG 59.759 55.000 0.00 0.00 0.00 5.14
3411 3607 1.270550 CCCAGAAATGCACTGTTGGTC 59.729 52.381 0.00 0.00 34.04 4.02
3487 3683 1.876416 GCAACGGAGCCAGTAAAGTCA 60.876 52.381 0.00 0.00 0.00 3.41
3503 3699 0.391793 AAGAAGCCTAGCTCCGCAAC 60.392 55.000 7.61 1.63 38.25 4.17
3641 3837 7.031975 GGAAACAAGCCTCAAAGAATCAATAG 58.968 38.462 0.00 0.00 0.00 1.73
3651 3847 0.263172 TGGGGGAAACAAGCCTCAAA 59.737 50.000 0.00 0.00 0.00 2.69
3671 3868 4.725490 ACTTAGCCTGCACCTTTTTCTAA 58.275 39.130 0.00 0.00 0.00 2.10
3875 4072 8.977505 GCAAACTGAAATTGAATAGCACTAAAA 58.022 29.630 0.00 0.00 0.00 1.52
3987 4195 9.521503 GAAGTAGAATAAGATTGCCAATTTTCC 57.478 33.333 0.00 0.00 0.00 3.13
3993 4201 9.241919 TGAATTGAAGTAGAATAAGATTGCCAA 57.758 29.630 0.00 0.00 0.00 4.52
3994 4202 8.806429 TGAATTGAAGTAGAATAAGATTGCCA 57.194 30.769 0.00 0.00 0.00 4.92
3995 4203 9.113838 TCTGAATTGAAGTAGAATAAGATTGCC 57.886 33.333 0.00 0.00 0.00 4.52
4015 4223 7.610305 ACCAAAACCGTAGTCATAATTCTGAAT 59.390 33.333 0.00 0.00 0.00 2.57
4060 4268 3.538387 AGGGATAAAACACTAGGGTGGT 58.462 45.455 0.00 0.00 46.55 4.16
4131 4339 2.484264 CACCGTTCCTTCCAATTGTCTC 59.516 50.000 4.43 0.00 0.00 3.36
4136 4344 2.649531 TGACACCGTTCCTTCCAATT 57.350 45.000 0.00 0.00 0.00 2.32
4152 4360 1.067060 GGTTCCCAACACAAGCTTGAC 59.933 52.381 32.50 16.60 0.00 3.18
4277 4515 0.547075 TTTTCCACAGGAACACGGGA 59.453 50.000 0.00 0.00 41.87 5.14
4299 4538 2.283145 AGCAACTCTTGAGGCAACAT 57.717 45.000 2.55 0.00 41.41 2.71
4382 4621 6.496144 ACACCCTCTGGTCCTAAATATAAC 57.504 41.667 0.00 0.00 45.57 1.89
4407 4646 1.154093 CGACCGCGAGCTAGTGAAA 60.154 57.895 8.23 0.00 40.82 2.69
4410 4649 1.868251 GAACGACCGCGAGCTAGTG 60.868 63.158 8.23 0.00 41.64 2.74
4514 4753 3.851976 TCCGACTGAAGAACTTCTAGC 57.148 47.619 14.31 4.36 40.14 3.42
4534 4782 5.824624 ACAAACTGAACTTGACAGATGACAT 59.175 36.000 0.00 0.00 38.55 3.06
4559 4807 3.243101 ACATTACCGCAGAGTCGATGTAG 60.243 47.826 0.00 0.00 29.75 2.74
4565 4813 0.735978 TGCACATTACCGCAGAGTCG 60.736 55.000 0.00 0.00 33.34 4.18
4587 4835 2.290450 GGGTTAAACGGATTGTCCTCCA 60.290 50.000 0.00 0.00 34.78 3.86
4595 4843 7.634671 AAAAATATCTCGGGTTAAACGGATT 57.365 32.000 0.73 0.00 0.00 3.01
4630 4879 5.458779 GTGTGCAAAAATAGTCAGGTCAAAC 59.541 40.000 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.