Multiple sequence alignment - TraesCS1A01G258600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G258600 chr1A 100.000 2759 0 0 1 2759 451735094 451737852 0.000000e+00 5096.0
1 TraesCS1A01G258600 chr1A 95.926 810 25 3 1955 2759 327012032 327012838 0.000000e+00 1306.0
2 TraesCS1A01G258600 chr1A 97.568 329 8 0 88 416 451727812 451728140 5.160000e-157 564.0
3 TraesCS1A01G258600 chr1A 94.636 261 14 0 621 881 593753503 593753243 3.310000e-109 405.0
4 TraesCS1A01G258600 chr1A 91.071 112 9 1 1955 2066 327013369 327013259 1.710000e-32 150.0
5 TraesCS1A01G258600 chr1A 81.667 180 27 4 1956 2132 451738306 451738130 7.960000e-31 145.0
6 TraesCS1A01G258600 chr3A 95.309 810 31 3 1956 2759 169838625 169839433 0.000000e+00 1279.0
7 TraesCS1A01G258600 chr3A 93.962 265 15 1 621 884 739916962 739916698 1.540000e-107 399.0
8 TraesCS1A01G258600 chr3A 96.800 125 4 0 1 125 59477788 59477912 2.780000e-50 209.0
9 TraesCS1A01G258600 chr3A 91.150 113 10 0 1954 2066 169839889 169839777 1.320000e-33 154.0
10 TraesCS1A01G258600 chr3A 93.137 102 7 0 1 102 18782057 18781956 1.710000e-32 150.0
11 TraesCS1A01G258600 chr5A 95.191 811 34 1 1954 2759 85661404 85660594 0.000000e+00 1277.0
12 TraesCS1A01G258600 chr2A 94.670 788 37 1 1977 2759 541848317 541847530 0.000000e+00 1218.0
13 TraesCS1A01G258600 chr2A 92.611 406 12 4 11 416 53388644 53389031 3.990000e-158 568.0
14 TraesCS1A01G258600 chr2A 89.953 428 13 2 1 416 36418230 36418639 2.430000e-145 525.0
15 TraesCS1A01G258600 chr2A 87.383 428 24 2 1 416 49743718 49744127 5.380000e-127 464.0
16 TraesCS1A01G258600 chr2A 84.659 352 50 4 67 416 658487138 658486789 5.660000e-92 348.0
17 TraesCS1A01G258600 chr2A 81.776 428 48 8 1 416 14211008 14210599 5.700000e-87 331.0
18 TraesCS1A01G258600 chr2A 80.328 427 53 8 1 414 621034265 621033857 7.470000e-76 294.0
19 TraesCS1A01G258600 chr2A 79.814 431 54 9 1 416 510526245 510525833 1.620000e-72 283.0
20 TraesCS1A01G258600 chr2A 96.104 77 3 0 1 77 709188431 709188355 2.880000e-25 126.0
21 TraesCS1A01G258600 chr2A 97.222 72 2 0 1 72 53388540 53388611 3.730000e-24 122.0
22 TraesCS1A01G258600 chr2A 85.047 107 16 0 1 107 20564347 20564453 2.900000e-20 110.0
23 TraesCS1A01G258600 chr1D 92.857 560 20 12 935 1491 350908097 350908639 0.000000e+00 795.0
24 TraesCS1A01G258600 chr1D 93.790 467 22 3 1488 1954 350908672 350909131 0.000000e+00 695.0
25 TraesCS1A01G258600 chr1D 95.880 267 10 1 617 882 422066861 422067127 5.460000e-117 431.0
26 TraesCS1A01G258600 chr1D 92.818 181 11 1 442 622 350907887 350908065 7.580000e-66 261.0
27 TraesCS1A01G258600 chr6B 90.893 560 25 15 935 1491 136918179 136918715 0.000000e+00 728.0
28 TraesCS1A01G258600 chr6B 92.910 409 27 2 1488 1895 136918748 136919155 6.580000e-166 593.0
29 TraesCS1A01G258600 chr6B 79.038 811 137 16 1955 2751 479872870 479872079 2.430000e-145 525.0
30 TraesCS1A01G258600 chr6B 92.105 266 20 1 621 886 40652279 40652543 9.330000e-100 374.0
31 TraesCS1A01G258600 chr6B 97.826 46 0 1 880 924 136918144 136918189 8.190000e-11 78.7
32 TraesCS1A01G258600 chr4A 90.408 417 22 4 1 417 581324029 581324427 1.450000e-147 532.0
33 TraesCS1A01G258600 chr4A 94.853 272 13 1 614 884 25079230 25079501 9.130000e-115 424.0
34 TraesCS1A01G258600 chr3B 85.372 417 59 2 1 416 544537925 544537510 5.460000e-117 431.0
35 TraesCS1A01G258600 chr3B 84.892 417 60 3 1 416 544543545 544543131 4.250000e-113 418.0
36 TraesCS1A01G258600 chr7D 84.248 419 53 7 2 418 563687678 563687271 1.990000e-106 396.0
37 TraesCS1A01G258600 chr7D 83.571 420 54 8 1 416 563693273 563692865 2.010000e-101 379.0
38 TraesCS1A01G258600 chr5D 92.937 269 19 0 617 885 279293135 279292867 2.580000e-105 392.0
39 TraesCS1A01G258600 chr7A 92.565 269 18 2 619 887 515222572 515222306 4.310000e-103 385.0
40 TraesCS1A01G258600 chr7A 91.760 267 22 0 621 887 672041379 672041113 3.360000e-99 372.0
41 TraesCS1A01G258600 chr2D 92.453 265 20 0 617 881 315858984 315859248 2.010000e-101 379.0
42 TraesCS1A01G258600 chr2B 82.910 433 63 7 1 422 284640106 284639674 2.010000e-101 379.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G258600 chr1A 451735094 451737852 2758 False 5096.000000 5096 100.000000 1 2759 1 chr1A.!!$F3 2758
1 TraesCS1A01G258600 chr1A 327012032 327012838 806 False 1306.000000 1306 95.926000 1955 2759 1 chr1A.!!$F1 804
2 TraesCS1A01G258600 chr3A 169838625 169839433 808 False 1279.000000 1279 95.309000 1956 2759 1 chr3A.!!$F2 803
3 TraesCS1A01G258600 chr5A 85660594 85661404 810 True 1277.000000 1277 95.191000 1954 2759 1 chr5A.!!$R1 805
4 TraesCS1A01G258600 chr2A 541847530 541848317 787 True 1218.000000 1218 94.670000 1977 2759 1 chr2A.!!$R3 782
5 TraesCS1A01G258600 chr1D 350907887 350909131 1244 False 583.666667 795 93.155000 442 1954 3 chr1D.!!$F2 1512
6 TraesCS1A01G258600 chr6B 479872079 479872870 791 True 525.000000 525 79.038000 1955 2751 1 chr6B.!!$R1 796
7 TraesCS1A01G258600 chr6B 136918144 136919155 1011 False 466.566667 728 93.876333 880 1895 3 chr6B.!!$F2 1015

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.029300 CATATTTCCAACAGGCGGCG 59.971 55.0 0.51 0.51 0.0 6.46 F
512 513 0.107459 GGCGAAGGAGGAAGAAGCAT 60.107 55.0 0.00 0.00 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1589 0.176680 CAGAAGGTCTGGATCACGGG 59.823 60.0 0.00 0.0 40.71 5.28 R
2438 2488 0.252479 CAGCTTCAGAGGAGCACCAT 59.748 55.0 2.07 0.0 38.94 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.580867 GCTCAGCGCGACTACTGG 60.581 66.667 12.10 3.05 34.57 4.00
25 26 2.580867 CTCAGCGCGACTACTGGC 60.581 66.667 12.10 0.00 34.57 4.85
26 27 3.057547 CTCAGCGCGACTACTGGCT 62.058 63.158 12.10 0.00 34.57 4.75
27 28 2.882777 CAGCGCGACTACTGGCTG 60.883 66.667 12.10 0.00 45.74 4.85
28 29 4.803426 AGCGCGACTACTGGCTGC 62.803 66.667 12.10 0.00 33.81 5.25
29 30 4.803426 GCGCGACTACTGGCTGCT 62.803 66.667 12.10 0.00 0.00 4.24
30 31 2.125912 CGCGACTACTGGCTGCTT 60.126 61.111 0.00 0.00 0.00 3.91
31 32 2.161486 CGCGACTACTGGCTGCTTC 61.161 63.158 0.00 0.00 0.00 3.86
32 33 1.079819 GCGACTACTGGCTGCTTCA 60.080 57.895 0.00 0.00 0.00 3.02
33 34 0.460987 GCGACTACTGGCTGCTTCAT 60.461 55.000 0.00 0.00 0.00 2.57
34 35 1.565305 CGACTACTGGCTGCTTCATC 58.435 55.000 0.00 0.00 0.00 2.92
35 36 1.134995 CGACTACTGGCTGCTTCATCA 60.135 52.381 0.00 0.00 0.00 3.07
36 37 2.275318 GACTACTGGCTGCTTCATCAC 58.725 52.381 0.00 0.00 0.00 3.06
37 38 1.284657 CTACTGGCTGCTTCATCACG 58.715 55.000 0.00 0.00 0.00 4.35
38 39 0.108186 TACTGGCTGCTTCATCACGG 60.108 55.000 0.00 0.00 0.00 4.94
39 40 1.078918 CTGGCTGCTTCATCACGGA 60.079 57.895 0.00 0.00 0.00 4.69
40 41 0.463295 CTGGCTGCTTCATCACGGAT 60.463 55.000 0.00 0.00 0.00 4.18
41 42 0.745486 TGGCTGCTTCATCACGGATG 60.745 55.000 0.00 7.36 41.00 3.51
42 43 0.462581 GGCTGCTTCATCACGGATGA 60.463 55.000 11.18 11.18 45.78 2.92
43 44 1.590932 GCTGCTTCATCACGGATGAT 58.409 50.000 14.67 0.58 46.52 2.45
44 45 1.530293 GCTGCTTCATCACGGATGATC 59.470 52.381 14.67 11.14 46.52 2.92
45 46 2.141517 CTGCTTCATCACGGATGATCC 58.858 52.381 14.67 0.08 46.52 3.36
65 66 3.181367 TCGCCGACGACTACTTCC 58.819 61.111 0.00 0.00 45.12 3.46
66 67 2.101770 CGCCGACGACTACTTCCC 59.898 66.667 0.00 0.00 43.93 3.97
67 68 2.493501 GCCGACGACTACTTCCCC 59.506 66.667 0.00 0.00 0.00 4.81
68 69 2.796651 CCGACGACTACTTCCCCG 59.203 66.667 0.00 0.00 0.00 5.73
69 70 1.746615 CCGACGACTACTTCCCCGA 60.747 63.158 0.00 0.00 0.00 5.14
70 71 1.427020 CGACGACTACTTCCCCGAC 59.573 63.158 0.00 0.00 0.00 4.79
71 72 1.427020 GACGACTACTTCCCCGACG 59.573 63.158 0.00 0.00 0.00 5.12
72 73 1.003355 ACGACTACTTCCCCGACGA 60.003 57.895 0.00 0.00 0.00 4.20
73 74 1.301677 ACGACTACTTCCCCGACGAC 61.302 60.000 0.00 0.00 0.00 4.34
74 75 1.427020 GACTACTTCCCCGACGACG 59.573 63.158 0.00 0.00 39.43 5.12
75 76 1.003355 ACTACTTCCCCGACGACGA 60.003 57.895 9.28 0.00 42.66 4.20
76 77 1.301677 ACTACTTCCCCGACGACGAC 61.302 60.000 9.28 0.00 42.66 4.34
77 78 1.003355 TACTTCCCCGACGACGACT 60.003 57.895 9.28 0.00 42.66 4.18
78 79 0.606401 TACTTCCCCGACGACGACTT 60.606 55.000 9.28 0.00 42.66 3.01
79 80 1.154073 CTTCCCCGACGACGACTTC 60.154 63.158 9.28 0.00 42.66 3.01
80 81 1.584380 CTTCCCCGACGACGACTTCT 61.584 60.000 9.28 0.00 42.66 2.85
81 82 1.174712 TTCCCCGACGACGACTTCTT 61.175 55.000 9.28 0.00 42.66 2.52
82 83 1.154073 CCCCGACGACGACTTCTTC 60.154 63.158 9.28 0.00 42.66 2.87
83 84 1.154073 CCCGACGACGACTTCTTCC 60.154 63.158 9.28 0.00 42.66 3.46
84 85 1.154073 CCGACGACGACTTCTTCCC 60.154 63.158 9.28 0.00 42.66 3.97
85 86 1.584380 CCGACGACGACTTCTTCCCT 61.584 60.000 9.28 0.00 42.66 4.20
86 87 0.454620 CGACGACGACTTCTTCCCTG 60.455 60.000 0.00 0.00 42.66 4.45
87 88 0.879765 GACGACGACTTCTTCCCTGA 59.120 55.000 0.00 0.00 0.00 3.86
88 89 0.597072 ACGACGACTTCTTCCCTGAC 59.403 55.000 0.00 0.00 0.00 3.51
89 90 0.454620 CGACGACTTCTTCCCTGACG 60.455 60.000 0.00 0.00 0.00 4.35
90 91 0.597072 GACGACTTCTTCCCTGACGT 59.403 55.000 0.00 0.00 35.24 4.34
91 92 0.597072 ACGACTTCTTCCCTGACGTC 59.403 55.000 9.11 9.11 33.59 4.34
92 93 0.109226 CGACTTCTTCCCTGACGTCC 60.109 60.000 14.12 0.00 33.42 4.79
93 94 0.966920 GACTTCTTCCCTGACGTCCA 59.033 55.000 14.12 0.01 31.60 4.02
94 95 0.680061 ACTTCTTCCCTGACGTCCAC 59.320 55.000 14.12 0.00 0.00 4.02
95 96 0.388649 CTTCTTCCCTGACGTCCACG 60.389 60.000 14.12 1.18 46.33 4.94
96 97 0.824595 TTCTTCCCTGACGTCCACGA 60.825 55.000 14.12 2.10 43.02 4.35
97 98 1.080705 CTTCCCTGACGTCCACGAC 60.081 63.158 14.12 0.00 43.02 4.34
98 99 2.488087 CTTCCCTGACGTCCACGACC 62.488 65.000 14.12 0.00 43.02 4.79
99 100 2.989173 TTCCCTGACGTCCACGACCT 62.989 60.000 14.12 0.00 43.02 3.85
100 101 2.567049 CCTGACGTCCACGACCTC 59.433 66.667 14.12 0.00 43.02 3.85
101 102 2.567049 CTGACGTCCACGACCTCC 59.433 66.667 14.12 0.00 43.02 4.30
102 103 1.972223 CTGACGTCCACGACCTCCT 60.972 63.158 14.12 0.00 43.02 3.69
103 104 1.924320 CTGACGTCCACGACCTCCTC 61.924 65.000 14.12 0.00 43.02 3.71
105 106 2.745100 CGTCCACGACCTCCTCGA 60.745 66.667 0.00 0.00 46.14 4.04
106 107 2.876219 GTCCACGACCTCCTCGAC 59.124 66.667 0.00 0.00 46.14 4.20
107 108 2.745100 TCCACGACCTCCTCGACG 60.745 66.667 0.00 0.00 46.14 5.12
108 109 2.745100 CCACGACCTCCTCGACGA 60.745 66.667 0.00 0.00 46.14 4.20
109 110 2.479650 CACGACCTCCTCGACGAC 59.520 66.667 0.00 0.00 46.14 4.34
110 111 2.031616 ACGACCTCCTCGACGACA 59.968 61.111 0.00 0.00 46.14 4.35
111 112 1.376942 ACGACCTCCTCGACGACAT 60.377 57.895 0.00 0.00 46.14 3.06
112 113 1.062685 CGACCTCCTCGACGACATG 59.937 63.158 0.00 0.00 46.14 3.21
113 114 1.433879 GACCTCCTCGACGACATGG 59.566 63.158 0.00 0.00 0.00 3.66
114 115 2.105128 CCTCCTCGACGACATGGC 59.895 66.667 0.00 0.00 0.00 4.40
115 116 2.710902 CCTCCTCGACGACATGGCA 61.711 63.158 0.00 0.00 0.00 4.92
116 117 1.226802 CTCCTCGACGACATGGCAG 60.227 63.158 0.00 0.00 0.00 4.85
117 118 2.202797 CCTCGACGACATGGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
118 119 2.887568 CTCGACGACATGGCAGGC 60.888 66.667 0.00 0.00 0.00 4.85
119 120 4.794439 TCGACGACATGGCAGGCG 62.794 66.667 11.73 11.73 0.00 5.52
120 121 4.794439 CGACGACATGGCAGGCGA 62.794 66.667 19.28 0.00 0.00 5.54
121 122 2.887568 GACGACATGGCAGGCGAG 60.888 66.667 19.28 5.45 0.00 5.03
122 123 4.457496 ACGACATGGCAGGCGAGG 62.457 66.667 19.28 1.14 0.00 4.63
123 124 4.147449 CGACATGGCAGGCGAGGA 62.147 66.667 9.68 0.00 0.00 3.71
124 125 2.512515 GACATGGCAGGCGAGGAC 60.513 66.667 0.00 0.00 0.00 3.85
125 126 3.315142 GACATGGCAGGCGAGGACA 62.315 63.158 0.00 0.00 0.00 4.02
126 127 2.821366 CATGGCAGGCGAGGACAC 60.821 66.667 0.00 0.00 0.00 3.67
127 128 4.101448 ATGGCAGGCGAGGACACC 62.101 66.667 0.00 0.00 0.00 4.16
131 132 4.436998 CAGGCGAGGACACCGACC 62.437 72.222 0.00 0.00 35.21 4.79
135 136 3.307906 CGAGGACACCGACCCCAA 61.308 66.667 0.00 0.00 0.00 4.12
136 137 2.663196 GAGGACACCGACCCCAAG 59.337 66.667 0.00 0.00 0.00 3.61
137 138 2.122547 AGGACACCGACCCCAAGT 60.123 61.111 0.00 0.00 0.00 3.16
138 139 2.168666 GAGGACACCGACCCCAAGTC 62.169 65.000 0.00 0.00 42.54 3.01
139 140 2.346365 GACACCGACCCCAAGTCC 59.654 66.667 0.00 0.00 43.08 3.85
140 141 2.446994 ACACCGACCCCAAGTCCA 60.447 61.111 0.00 0.00 43.08 4.02
141 142 2.347490 CACCGACCCCAAGTCCAG 59.653 66.667 0.00 0.00 43.08 3.86
142 143 3.637273 ACCGACCCCAAGTCCAGC 61.637 66.667 0.00 0.00 43.08 4.85
143 144 4.760047 CCGACCCCAAGTCCAGCG 62.760 72.222 0.00 0.00 43.08 5.18
145 146 4.021925 GACCCCAAGTCCAGCGCT 62.022 66.667 2.64 2.64 39.84 5.92
146 147 3.553095 GACCCCAAGTCCAGCGCTT 62.553 63.158 7.50 0.00 39.84 4.68
147 148 2.747855 CCCCAAGTCCAGCGCTTC 60.748 66.667 7.50 0.75 0.00 3.86
148 149 2.348998 CCCAAGTCCAGCGCTTCT 59.651 61.111 7.50 3.60 0.00 2.85
149 150 2.037136 CCCAAGTCCAGCGCTTCTG 61.037 63.158 7.50 0.00 42.49 3.02
150 151 2.684843 CCAAGTCCAGCGCTTCTGC 61.685 63.158 7.50 0.00 41.50 4.26
157 158 4.701290 AGCGCTTCTGCTGCTGCT 62.701 61.111 17.00 0.00 45.28 4.24
158 159 4.462417 GCGCTTCTGCTGCTGCTG 62.462 66.667 17.00 15.94 40.48 4.41
159 160 3.048475 CGCTTCTGCTGCTGCTGT 61.048 61.111 17.00 0.00 40.48 4.40
160 161 2.868920 GCTTCTGCTGCTGCTGTC 59.131 61.111 17.00 6.73 40.48 3.51
161 162 2.688794 GCTTCTGCTGCTGCTGTCC 61.689 63.158 17.00 5.76 40.48 4.02
162 163 2.033141 TTCTGCTGCTGCTGTCCC 59.967 61.111 17.00 0.00 40.48 4.46
163 164 3.889134 TTCTGCTGCTGCTGTCCCG 62.889 63.158 17.00 0.00 40.48 5.14
164 165 4.694233 CTGCTGCTGCTGTCCCGT 62.694 66.667 17.00 0.00 40.48 5.28
165 166 3.300934 CTGCTGCTGCTGTCCCGTA 62.301 63.158 17.00 0.00 40.48 4.02
166 167 2.815647 GCTGCTGCTGTCCCGTAC 60.816 66.667 8.53 0.00 36.03 3.67
167 168 2.507102 CTGCTGCTGTCCCGTACG 60.507 66.667 8.69 8.69 0.00 3.67
168 169 3.282745 CTGCTGCTGTCCCGTACGT 62.283 63.158 15.21 0.00 0.00 3.57
169 170 2.809601 GCTGCTGTCCCGTACGTG 60.810 66.667 15.21 2.17 0.00 4.49
170 171 2.649034 CTGCTGTCCCGTACGTGT 59.351 61.111 15.21 0.00 0.00 4.49
171 172 1.006571 CTGCTGTCCCGTACGTGTT 60.007 57.895 15.21 0.00 0.00 3.32
172 173 1.007038 TGCTGTCCCGTACGTGTTC 60.007 57.895 15.21 1.93 0.00 3.18
173 174 1.288127 GCTGTCCCGTACGTGTTCT 59.712 57.895 15.21 0.00 0.00 3.01
174 175 0.319297 GCTGTCCCGTACGTGTTCTT 60.319 55.000 15.21 0.00 0.00 2.52
175 176 1.068333 GCTGTCCCGTACGTGTTCTTA 60.068 52.381 15.21 0.00 0.00 2.10
176 177 2.416431 GCTGTCCCGTACGTGTTCTTAT 60.416 50.000 15.21 0.00 0.00 1.73
177 178 3.432782 CTGTCCCGTACGTGTTCTTATC 58.567 50.000 15.21 0.00 0.00 1.75
178 179 3.084039 TGTCCCGTACGTGTTCTTATCT 58.916 45.455 15.21 0.00 0.00 1.98
179 180 3.507233 TGTCCCGTACGTGTTCTTATCTT 59.493 43.478 15.21 0.00 0.00 2.40
180 181 4.022068 TGTCCCGTACGTGTTCTTATCTTT 60.022 41.667 15.21 0.00 0.00 2.52
181 182 4.560427 GTCCCGTACGTGTTCTTATCTTTC 59.440 45.833 15.21 0.00 0.00 2.62
182 183 3.861689 CCCGTACGTGTTCTTATCTTTCC 59.138 47.826 15.21 0.00 0.00 3.13
183 184 4.381292 CCCGTACGTGTTCTTATCTTTCCT 60.381 45.833 15.21 0.00 0.00 3.36
184 185 4.561606 CCGTACGTGTTCTTATCTTTCCTG 59.438 45.833 15.21 0.00 0.00 3.86
185 186 5.159209 CGTACGTGTTCTTATCTTTCCTGT 58.841 41.667 7.22 0.00 0.00 4.00
186 187 5.632347 CGTACGTGTTCTTATCTTTCCTGTT 59.368 40.000 7.22 0.00 0.00 3.16
187 188 6.803320 CGTACGTGTTCTTATCTTTCCTGTTA 59.197 38.462 7.22 0.00 0.00 2.41
188 189 7.326789 CGTACGTGTTCTTATCTTTCCTGTTAA 59.673 37.037 7.22 0.00 0.00 2.01
189 190 8.981647 GTACGTGTTCTTATCTTTCCTGTTAAA 58.018 33.333 0.00 0.00 0.00 1.52
190 191 8.084590 ACGTGTTCTTATCTTTCCTGTTAAAG 57.915 34.615 0.00 0.00 37.73 1.85
200 201 1.778334 CCTGTTAAAGGTTTTGCCGC 58.222 50.000 0.00 0.00 41.74 6.53
201 202 1.067821 CCTGTTAAAGGTTTTGCCGCA 59.932 47.619 0.00 0.00 41.74 5.69
202 203 2.393764 CTGTTAAAGGTTTTGCCGCAG 58.606 47.619 0.00 0.00 43.70 5.18
203 204 1.751924 TGTTAAAGGTTTTGCCGCAGT 59.248 42.857 0.00 0.00 43.70 4.40
204 205 2.166664 TGTTAAAGGTTTTGCCGCAGTT 59.833 40.909 0.00 0.00 43.70 3.16
205 206 2.785713 TAAAGGTTTTGCCGCAGTTC 57.214 45.000 0.00 0.00 43.70 3.01
206 207 0.104120 AAAGGTTTTGCCGCAGTTCC 59.896 50.000 0.00 0.00 43.70 3.62
207 208 0.755327 AAGGTTTTGCCGCAGTTCCT 60.755 50.000 0.00 0.00 43.70 3.36
208 209 0.755327 AGGTTTTGCCGCAGTTCCTT 60.755 50.000 0.00 0.00 43.70 3.36
209 210 0.597377 GGTTTTGCCGCAGTTCCTTG 60.597 55.000 0.00 0.00 0.00 3.61
210 211 0.102300 GTTTTGCCGCAGTTCCTTGT 59.898 50.000 0.00 0.00 0.00 3.16
211 212 0.383949 TTTTGCCGCAGTTCCTTGTC 59.616 50.000 0.00 0.00 0.00 3.18
212 213 1.452145 TTTGCCGCAGTTCCTTGTCC 61.452 55.000 0.00 0.00 0.00 4.02
213 214 2.032681 GCCGCAGTTCCTTGTCCT 59.967 61.111 0.00 0.00 0.00 3.85
214 215 1.295423 GCCGCAGTTCCTTGTCCTA 59.705 57.895 0.00 0.00 0.00 2.94
215 216 1.019805 GCCGCAGTTCCTTGTCCTAC 61.020 60.000 0.00 0.00 0.00 3.18
216 217 0.320374 CCGCAGTTCCTTGTCCTACA 59.680 55.000 0.00 0.00 0.00 2.74
217 218 1.429463 CGCAGTTCCTTGTCCTACAC 58.571 55.000 0.00 0.00 0.00 2.90
218 219 1.270094 CGCAGTTCCTTGTCCTACACA 60.270 52.381 0.00 0.00 0.00 3.72
219 220 2.612972 CGCAGTTCCTTGTCCTACACAT 60.613 50.000 0.00 0.00 33.90 3.21
220 221 2.744202 GCAGTTCCTTGTCCTACACATG 59.256 50.000 0.00 0.00 33.90 3.21
221 222 3.557054 GCAGTTCCTTGTCCTACACATGA 60.557 47.826 0.00 0.00 33.90 3.07
222 223 4.836825 CAGTTCCTTGTCCTACACATGAT 58.163 43.478 0.00 0.00 33.90 2.45
223 224 5.626809 GCAGTTCCTTGTCCTACACATGATA 60.627 44.000 0.00 0.00 33.90 2.15
224 225 6.045318 CAGTTCCTTGTCCTACACATGATAG 58.955 44.000 0.00 0.47 33.90 2.08
225 226 5.129485 AGTTCCTTGTCCTACACATGATAGG 59.871 44.000 17.03 17.03 40.67 2.57
226 227 4.620723 TCCTTGTCCTACACATGATAGGT 58.379 43.478 20.34 8.00 40.27 3.08
227 228 5.030147 TCCTTGTCCTACACATGATAGGTT 58.970 41.667 20.34 0.00 40.27 3.50
228 229 5.128827 TCCTTGTCCTACACATGATAGGTTC 59.871 44.000 20.34 16.27 40.27 3.62
229 230 5.129485 CCTTGTCCTACACATGATAGGTTCT 59.871 44.000 20.34 0.00 40.27 3.01
230 231 6.323996 CCTTGTCCTACACATGATAGGTTCTA 59.676 42.308 20.34 13.46 40.27 2.10
231 232 6.710597 TGTCCTACACATGATAGGTTCTAC 57.289 41.667 20.34 14.35 40.27 2.59
232 233 6.432581 TGTCCTACACATGATAGGTTCTACT 58.567 40.000 20.34 0.00 40.27 2.57
233 234 6.895756 TGTCCTACACATGATAGGTTCTACTT 59.104 38.462 20.34 0.00 40.27 2.24
234 235 7.068348 TGTCCTACACATGATAGGTTCTACTTC 59.932 40.741 20.34 8.45 40.27 3.01
235 236 7.068348 GTCCTACACATGATAGGTTCTACTTCA 59.932 40.741 20.34 3.27 40.27 3.02
236 237 7.785028 TCCTACACATGATAGGTTCTACTTCAT 59.215 37.037 20.34 0.00 40.27 2.57
237 238 9.078990 CCTACACATGATAGGTTCTACTTCATA 57.921 37.037 15.63 0.00 35.40 2.15
242 243 8.754080 ACATGATAGGTTCTACTTCATATAGGC 58.246 37.037 0.00 0.00 0.00 3.93
243 244 8.976353 CATGATAGGTTCTACTTCATATAGGCT 58.024 37.037 0.00 0.00 0.00 4.58
245 246 9.463902 TGATAGGTTCTACTTCATATAGGCTAC 57.536 37.037 0.00 0.00 0.00 3.58
246 247 9.689501 GATAGGTTCTACTTCATATAGGCTACT 57.310 37.037 0.00 0.00 0.00 2.57
248 249 8.184304 AGGTTCTACTTCATATAGGCTACTTG 57.816 38.462 0.00 0.00 0.00 3.16
249 250 6.869388 GGTTCTACTTCATATAGGCTACTTGC 59.131 42.308 0.00 0.00 41.94 4.01
250 251 7.256012 GGTTCTACTTCATATAGGCTACTTGCT 60.256 40.741 0.00 0.00 42.39 3.91
251 252 8.794553 GTTCTACTTCATATAGGCTACTTGCTA 58.205 37.037 0.00 0.00 42.39 3.49
252 253 9.535170 TTCTACTTCATATAGGCTACTTGCTAT 57.465 33.333 0.00 0.00 42.39 2.97
255 256 8.887264 ACTTCATATAGGCTACTTGCTATACT 57.113 34.615 0.00 0.00 42.39 2.12
256 257 8.744652 ACTTCATATAGGCTACTTGCTATACTG 58.255 37.037 0.00 0.00 42.39 2.74
257 258 8.651589 TTCATATAGGCTACTTGCTATACTGT 57.348 34.615 0.00 0.00 42.39 3.55
258 259 8.282455 TCATATAGGCTACTTGCTATACTGTC 57.718 38.462 0.00 0.00 42.39 3.51
259 260 8.110271 TCATATAGGCTACTTGCTATACTGTCT 58.890 37.037 0.00 0.00 42.39 3.41
260 261 4.927978 AGGCTACTTGCTATACTGTCTG 57.072 45.455 0.00 0.00 42.39 3.51
261 262 3.068873 AGGCTACTTGCTATACTGTCTGC 59.931 47.826 0.00 0.00 42.39 4.26
262 263 3.068873 GGCTACTTGCTATACTGTCTGCT 59.931 47.826 0.00 0.00 42.39 4.24
263 264 4.442192 GGCTACTTGCTATACTGTCTGCTT 60.442 45.833 0.00 0.00 42.39 3.91
264 265 5.112686 GCTACTTGCTATACTGTCTGCTTT 58.887 41.667 0.00 0.00 38.95 3.51
265 266 6.273825 GCTACTTGCTATACTGTCTGCTTTA 58.726 40.000 0.00 0.00 38.95 1.85
266 267 6.419413 GCTACTTGCTATACTGTCTGCTTTAG 59.581 42.308 0.00 0.00 38.95 1.85
267 268 6.531503 ACTTGCTATACTGTCTGCTTTAGA 57.468 37.500 0.00 0.00 0.00 2.10
268 269 7.118496 ACTTGCTATACTGTCTGCTTTAGAT 57.882 36.000 0.00 0.00 37.83 1.98
269 270 8.239038 ACTTGCTATACTGTCTGCTTTAGATA 57.761 34.615 0.00 0.00 37.83 1.98
270 271 8.865090 ACTTGCTATACTGTCTGCTTTAGATAT 58.135 33.333 0.00 0.00 37.83 1.63
271 272 9.138062 CTTGCTATACTGTCTGCTTTAGATATG 57.862 37.037 0.00 0.00 37.83 1.78
272 273 8.409358 TGCTATACTGTCTGCTTTAGATATGA 57.591 34.615 0.00 0.00 37.83 2.15
273 274 9.029368 TGCTATACTGTCTGCTTTAGATATGAT 57.971 33.333 0.00 0.00 37.83 2.45
277 278 6.696411 ACTGTCTGCTTTAGATATGATAGGC 58.304 40.000 0.00 0.00 37.83 3.93
278 279 6.496565 ACTGTCTGCTTTAGATATGATAGGCT 59.503 38.462 0.00 0.00 37.83 4.58
279 280 7.671819 ACTGTCTGCTTTAGATATGATAGGCTA 59.328 37.037 0.00 0.00 37.83 3.93
280 281 7.831753 TGTCTGCTTTAGATATGATAGGCTAC 58.168 38.462 0.00 0.00 37.83 3.58
281 282 6.970043 GTCTGCTTTAGATATGATAGGCTACG 59.030 42.308 0.00 0.00 37.83 3.51
282 283 6.095580 TCTGCTTTAGATATGATAGGCTACGG 59.904 42.308 0.00 0.00 0.00 4.02
283 284 5.715279 TGCTTTAGATATGATAGGCTACGGT 59.285 40.000 0.00 0.00 0.00 4.83
284 285 6.210784 TGCTTTAGATATGATAGGCTACGGTT 59.789 38.462 0.00 0.00 0.00 4.44
285 286 6.752815 GCTTTAGATATGATAGGCTACGGTTC 59.247 42.308 0.00 0.00 0.00 3.62
286 287 7.577046 GCTTTAGATATGATAGGCTACGGTTCA 60.577 40.741 0.00 0.00 0.00 3.18
287 288 7.956328 TTAGATATGATAGGCTACGGTTCAT 57.044 36.000 11.81 11.81 0.00 2.57
288 289 9.470399 TTTAGATATGATAGGCTACGGTTCATA 57.530 33.333 14.64 14.64 34.72 2.15
289 290 9.642343 TTAGATATGATAGGCTACGGTTCATAT 57.358 33.333 20.45 20.45 40.76 1.78
291 292 9.815306 AGATATGATAGGCTACGGTTCATATAT 57.185 33.333 20.40 16.92 39.11 0.86
292 293 9.847706 GATATGATAGGCTACGGTTCATATATG 57.152 37.037 20.40 6.36 39.11 1.78
293 294 5.902681 TGATAGGCTACGGTTCATATATGC 58.097 41.667 7.92 0.00 0.00 3.14
294 295 5.420739 TGATAGGCTACGGTTCATATATGCA 59.579 40.000 7.92 0.00 0.00 3.96
295 296 4.193826 AGGCTACGGTTCATATATGCAG 57.806 45.455 7.92 0.00 0.00 4.41
296 297 3.832490 AGGCTACGGTTCATATATGCAGA 59.168 43.478 7.92 0.00 0.00 4.26
297 298 4.283467 AGGCTACGGTTCATATATGCAGAA 59.717 41.667 7.92 0.00 0.00 3.02
298 299 4.627467 GGCTACGGTTCATATATGCAGAAG 59.373 45.833 7.92 2.39 0.00 2.85
299 300 4.092091 GCTACGGTTCATATATGCAGAAGC 59.908 45.833 7.92 6.34 42.57 3.86
300 301 4.342862 ACGGTTCATATATGCAGAAGCT 57.657 40.909 7.92 0.00 42.74 3.74
301 302 5.468540 ACGGTTCATATATGCAGAAGCTA 57.531 39.130 7.92 0.00 42.74 3.32
302 303 6.042638 ACGGTTCATATATGCAGAAGCTAT 57.957 37.500 7.92 0.00 42.74 2.97
303 304 6.467677 ACGGTTCATATATGCAGAAGCTATT 58.532 36.000 7.92 0.00 42.74 1.73
304 305 6.936900 ACGGTTCATATATGCAGAAGCTATTT 59.063 34.615 7.92 0.00 42.74 1.40
305 306 8.094548 ACGGTTCATATATGCAGAAGCTATTTA 58.905 33.333 7.92 0.00 42.74 1.40
306 307 8.383619 CGGTTCATATATGCAGAAGCTATTTAC 58.616 37.037 7.92 0.00 42.74 2.01
307 308 8.669243 GGTTCATATATGCAGAAGCTATTTACC 58.331 37.037 7.92 0.00 42.74 2.85
308 309 9.442047 GTTCATATATGCAGAAGCTATTTACCT 57.558 33.333 7.92 0.00 42.74 3.08
310 311 9.658799 TCATATATGCAGAAGCTATTTACCTTC 57.341 33.333 7.92 0.00 42.74 3.46
311 312 9.664332 CATATATGCAGAAGCTATTTACCTTCT 57.336 33.333 0.00 0.00 46.36 2.85
312 313 9.883142 ATATATGCAGAAGCTATTTACCTTCTC 57.117 33.333 0.00 0.00 44.30 2.87
313 314 5.683876 TGCAGAAGCTATTTACCTTCTCT 57.316 39.130 0.27 0.00 44.30 3.10
314 315 5.665459 TGCAGAAGCTATTTACCTTCTCTC 58.335 41.667 0.27 0.00 44.30 3.20
315 316 5.423610 TGCAGAAGCTATTTACCTTCTCTCT 59.576 40.000 0.27 0.00 44.30 3.10
316 317 5.752955 GCAGAAGCTATTTACCTTCTCTCTG 59.247 44.000 0.27 0.00 44.30 3.35
317 318 6.629291 GCAGAAGCTATTTACCTTCTCTCTGT 60.629 42.308 0.27 0.00 44.30 3.41
318 319 6.978080 CAGAAGCTATTTACCTTCTCTCTGTC 59.022 42.308 0.27 0.00 44.30 3.51
319 320 6.665680 AGAAGCTATTTACCTTCTCTCTGTCA 59.334 38.462 0.00 0.00 43.02 3.58
320 321 6.859112 AGCTATTTACCTTCTCTCTGTCAA 57.141 37.500 0.00 0.00 0.00 3.18
321 322 7.246171 AGCTATTTACCTTCTCTCTGTCAAA 57.754 36.000 0.00 0.00 0.00 2.69
322 323 7.680730 AGCTATTTACCTTCTCTCTGTCAAAA 58.319 34.615 0.00 0.00 0.00 2.44
323 324 7.604545 AGCTATTTACCTTCTCTCTGTCAAAAC 59.395 37.037 0.00 0.00 0.00 2.43
324 325 6.787085 ATTTACCTTCTCTCTGTCAAAACG 57.213 37.500 0.00 0.00 0.00 3.60
325 326 3.821421 ACCTTCTCTCTGTCAAAACGT 57.179 42.857 0.00 0.00 0.00 3.99
326 327 4.931661 ACCTTCTCTCTGTCAAAACGTA 57.068 40.909 0.00 0.00 0.00 3.57
327 328 5.470047 ACCTTCTCTCTGTCAAAACGTAT 57.530 39.130 0.00 0.00 0.00 3.06
328 329 5.230942 ACCTTCTCTCTGTCAAAACGTATG 58.769 41.667 0.00 0.00 0.00 2.39
329 330 5.010719 ACCTTCTCTCTGTCAAAACGTATGA 59.989 40.000 0.00 0.00 0.00 2.15
330 331 5.346281 CCTTCTCTCTGTCAAAACGTATGAC 59.654 44.000 21.34 21.34 45.82 3.06
331 332 5.707242 TCTCTCTGTCAAAACGTATGACT 57.293 39.130 25.64 0.00 45.81 3.41
332 333 6.085555 TCTCTCTGTCAAAACGTATGACTT 57.914 37.500 25.64 0.25 45.81 3.01
333 334 5.920840 TCTCTCTGTCAAAACGTATGACTTG 59.079 40.000 25.64 19.98 45.81 3.16
334 335 5.597806 TCTCTGTCAAAACGTATGACTTGT 58.402 37.500 25.64 0.00 45.81 3.16
335 336 6.046593 TCTCTGTCAAAACGTATGACTTGTT 58.953 36.000 25.64 0.00 45.81 2.83
336 337 6.537301 TCTCTGTCAAAACGTATGACTTGTTT 59.463 34.615 25.64 4.28 45.81 2.83
337 338 7.065324 TCTCTGTCAAAACGTATGACTTGTTTT 59.935 33.333 25.64 3.65 45.81 2.43
338 339 8.199176 TCTGTCAAAACGTATGACTTGTTTTA 57.801 30.769 25.64 10.32 45.81 1.52
339 340 8.832521 TCTGTCAAAACGTATGACTTGTTTTAT 58.167 29.630 25.64 0.00 45.81 1.40
340 341 8.996988 TGTCAAAACGTATGACTTGTTTTATC 57.003 30.769 25.64 5.54 45.81 1.75
341 342 8.832521 TGTCAAAACGTATGACTTGTTTTATCT 58.167 29.630 25.64 0.00 45.81 1.98
342 343 9.314501 GTCAAAACGTATGACTTGTTTTATCTC 57.685 33.333 21.02 0.00 42.20 2.75
343 344 9.268268 TCAAAACGTATGACTTGTTTTATCTCT 57.732 29.630 0.00 0.00 42.20 3.10
344 345 9.878599 CAAAACGTATGACTTGTTTTATCTCTT 57.121 29.630 0.00 0.00 42.20 2.85
346 347 9.490379 AAACGTATGACTTGTTTTATCTCTTCT 57.510 29.630 0.00 0.00 32.20 2.85
416 417 9.806203 TTGATAAATTGCTCATATTTCCAACAG 57.194 29.630 0.00 0.00 0.00 3.16
417 418 8.415553 TGATAAATTGCTCATATTTCCAACAGG 58.584 33.333 0.00 0.00 0.00 4.00
418 419 4.660789 ATTGCTCATATTTCCAACAGGC 57.339 40.909 0.00 0.00 0.00 4.85
419 420 2.016318 TGCTCATATTTCCAACAGGCG 58.984 47.619 0.00 0.00 0.00 5.52
420 421 1.334869 GCTCATATTTCCAACAGGCGG 59.665 52.381 0.00 0.00 0.00 6.13
421 422 1.334869 CTCATATTTCCAACAGGCGGC 59.665 52.381 0.00 0.00 0.00 6.53
422 423 0.029300 CATATTTCCAACAGGCGGCG 59.971 55.000 0.51 0.51 0.00 6.46
423 424 1.101049 ATATTTCCAACAGGCGGCGG 61.101 55.000 9.78 7.74 0.00 6.13
436 437 4.115199 GGCGGGGCAGATGGACTT 62.115 66.667 0.00 0.00 0.00 3.01
437 438 2.044946 GCGGGGCAGATGGACTTT 60.045 61.111 0.00 0.00 0.00 2.66
438 439 2.409870 GCGGGGCAGATGGACTTTG 61.410 63.158 0.00 0.00 0.00 2.77
439 440 1.750399 CGGGGCAGATGGACTTTGG 60.750 63.158 0.00 0.00 0.00 3.28
440 441 1.384191 GGGGCAGATGGACTTTGGT 59.616 57.895 0.00 0.00 0.00 3.67
441 442 0.251787 GGGGCAGATGGACTTTGGTT 60.252 55.000 0.00 0.00 0.00 3.67
442 443 1.632589 GGGCAGATGGACTTTGGTTT 58.367 50.000 0.00 0.00 0.00 3.27
443 444 2.556559 GGGGCAGATGGACTTTGGTTTA 60.557 50.000 0.00 0.00 0.00 2.01
512 513 0.107459 GGCGAAGGAGGAAGAAGCAT 60.107 55.000 0.00 0.00 0.00 3.79
520 521 2.103941 GGAGGAAGAAGCATAGGTGAGG 59.896 54.545 0.00 0.00 0.00 3.86
521 522 3.034635 GAGGAAGAAGCATAGGTGAGGA 58.965 50.000 0.00 0.00 0.00 3.71
530 531 1.701847 CATAGGTGAGGAGGGGGATTG 59.298 57.143 0.00 0.00 0.00 2.67
588 589 2.240162 GATTCGAACCCGAGGTGGCT 62.240 60.000 0.00 0.00 46.39 4.75
596 597 1.987855 CCGAGGTGGCTTGGGACTA 60.988 63.158 0.00 0.00 0.00 2.59
612 613 2.239907 GGACTATTCCCAAACCAGAGCT 59.760 50.000 0.00 0.00 35.57 4.09
620 621 2.040412 CCCAAACCAGAGCTAAGGTTCT 59.960 50.000 19.37 9.56 46.92 3.01
621 622 3.263425 CCCAAACCAGAGCTAAGGTTCTA 59.737 47.826 19.37 0.00 46.92 2.10
622 623 4.254492 CCAAACCAGAGCTAAGGTTCTAC 58.746 47.826 19.37 0.00 46.92 2.59
623 624 4.020128 CCAAACCAGAGCTAAGGTTCTACT 60.020 45.833 19.37 4.74 46.92 2.57
624 625 5.172205 CAAACCAGAGCTAAGGTTCTACTC 58.828 45.833 19.37 0.00 46.92 2.59
625 626 4.325084 ACCAGAGCTAAGGTTCTACTCT 57.675 45.455 3.78 0.00 38.22 3.24
626 627 4.274978 ACCAGAGCTAAGGTTCTACTCTC 58.725 47.826 3.78 0.00 35.57 3.20
627 628 4.017867 ACCAGAGCTAAGGTTCTACTCTCT 60.018 45.833 3.78 0.00 35.57 3.10
628 629 4.953579 CCAGAGCTAAGGTTCTACTCTCTT 59.046 45.833 0.00 0.00 35.57 2.85
629 630 5.067283 CCAGAGCTAAGGTTCTACTCTCTTC 59.933 48.000 0.00 0.00 35.57 2.87
630 631 4.879545 AGAGCTAAGGTTCTACTCTCTTCG 59.120 45.833 0.00 0.00 32.30 3.79
631 632 4.591929 AGCTAAGGTTCTACTCTCTTCGT 58.408 43.478 0.00 0.00 0.00 3.85
632 633 5.011586 AGCTAAGGTTCTACTCTCTTCGTT 58.988 41.667 0.00 0.00 0.00 3.85
633 634 5.477637 AGCTAAGGTTCTACTCTCTTCGTTT 59.522 40.000 0.00 0.00 0.00 3.60
634 635 6.015265 AGCTAAGGTTCTACTCTCTTCGTTTT 60.015 38.462 0.00 0.00 0.00 2.43
635 636 6.645827 GCTAAGGTTCTACTCTCTTCGTTTTT 59.354 38.462 0.00 0.00 0.00 1.94
636 637 7.811713 GCTAAGGTTCTACTCTCTTCGTTTTTA 59.188 37.037 0.00 0.00 0.00 1.52
637 638 9.857957 CTAAGGTTCTACTCTCTTCGTTTTTAT 57.142 33.333 0.00 0.00 0.00 1.40
639 640 9.557061 AAGGTTCTACTCTCTTCGTTTTTATTT 57.443 29.630 0.00 0.00 0.00 1.40
646 647 8.019769 ACTCTCTTCGTTTTTATTTACTCTGC 57.980 34.615 0.00 0.00 0.00 4.26
647 648 7.656137 ACTCTCTTCGTTTTTATTTACTCTGCA 59.344 33.333 0.00 0.00 0.00 4.41
648 649 8.547967 TCTCTTCGTTTTTATTTACTCTGCAT 57.452 30.769 0.00 0.00 0.00 3.96
649 650 9.647797 TCTCTTCGTTTTTATTTACTCTGCATA 57.352 29.630 0.00 0.00 0.00 3.14
665 666 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
666 667 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
667 668 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
690 691 7.979115 TCAAACTTCGTAAAATTTGACCAAG 57.021 32.000 10.56 10.56 36.42 3.61
691 692 7.540299 TCAAACTTCGTAAAATTTGACCAAGT 58.460 30.769 11.70 11.70 36.42 3.16
692 693 8.030106 TCAAACTTCGTAAAATTTGACCAAGTT 58.970 29.630 19.96 19.96 36.42 2.66
693 694 8.652463 CAAACTTCGTAAAATTTGACCAAGTTT 58.348 29.630 26.24 26.24 41.32 2.66
694 695 9.857957 AAACTTCGTAAAATTTGACCAAGTTTA 57.142 25.926 28.65 0.58 39.73 2.01
740 741 9.898152 TTACCATAACAAATCTACATGATGTGA 57.102 29.630 8.61 4.35 41.79 3.58
741 742 8.806429 ACCATAACAAATCTACATGATGTGAA 57.194 30.769 8.61 0.00 41.79 3.18
742 743 9.241919 ACCATAACAAATCTACATGATGTGAAA 57.758 29.630 8.61 0.00 41.79 2.69
743 744 9.726232 CCATAACAAATCTACATGATGTGAAAG 57.274 33.333 8.61 0.00 41.79 2.62
747 748 8.846943 ACAAATCTACATGATGTGAAAGTACA 57.153 30.769 8.61 0.00 41.79 2.90
748 749 9.453572 ACAAATCTACATGATGTGAAAGTACAT 57.546 29.630 8.61 0.00 41.79 2.29
751 752 9.671279 AATCTACATGATGTGAAAGTACATTCA 57.329 29.630 8.61 9.38 41.15 2.57
752 753 9.671279 ATCTACATGATGTGAAAGTACATTCAA 57.329 29.630 14.64 6.63 41.15 2.69
753 754 9.671279 TCTACATGATGTGAAAGTACATTCAAT 57.329 29.630 14.64 10.53 41.15 2.57
835 836 9.516314 ACTTAGTCAAAATTTACAAAGCTTGAC 57.484 29.630 16.47 16.47 40.32 3.18
836 837 9.736023 CTTAGTCAAAATTTACAAAGCTTGACT 57.264 29.630 23.62 23.62 45.61 3.41
856 857 3.670203 CTTTGACCAAAGCTAATACGCG 58.330 45.455 3.53 3.53 40.94 6.01
857 858 2.658373 TGACCAAAGCTAATACGCGA 57.342 45.000 15.93 0.00 34.40 5.87
858 859 2.962125 TGACCAAAGCTAATACGCGAA 58.038 42.857 15.93 0.00 34.40 4.70
859 860 2.669434 TGACCAAAGCTAATACGCGAAC 59.331 45.455 15.93 0.00 34.40 3.95
860 861 2.928116 GACCAAAGCTAATACGCGAACT 59.072 45.455 15.93 0.00 34.40 3.01
861 862 4.107622 GACCAAAGCTAATACGCGAACTA 58.892 43.478 15.93 0.00 34.40 2.24
862 863 4.497300 ACCAAAGCTAATACGCGAACTAA 58.503 39.130 15.93 0.00 34.40 2.24
863 864 4.931002 ACCAAAGCTAATACGCGAACTAAA 59.069 37.500 15.93 0.00 34.40 1.85
864 865 5.583457 ACCAAAGCTAATACGCGAACTAAAT 59.417 36.000 15.93 0.00 34.40 1.40
865 866 6.757947 ACCAAAGCTAATACGCGAACTAAATA 59.242 34.615 15.93 0.00 34.40 1.40
866 867 7.278424 ACCAAAGCTAATACGCGAACTAAATAA 59.722 33.333 15.93 0.00 34.40 1.40
867 868 8.117988 CCAAAGCTAATACGCGAACTAAATAAA 58.882 33.333 15.93 0.00 34.40 1.40
868 869 9.480538 CAAAGCTAATACGCGAACTAAATAAAA 57.519 29.630 15.93 0.00 34.40 1.52
870 871 9.481800 AAGCTAATACGCGAACTAAATAAAAAC 57.518 29.630 15.93 0.00 34.40 2.43
871 872 7.842721 AGCTAATACGCGAACTAAATAAAAACG 59.157 33.333 15.93 0.00 34.40 3.60
872 873 7.840797 GCTAATACGCGAACTAAATAAAAACGA 59.159 33.333 15.93 0.00 0.00 3.85
873 874 9.674208 CTAATACGCGAACTAAATAAAAACGAA 57.326 29.630 15.93 0.00 0.00 3.85
874 875 8.578174 AATACGCGAACTAAATAAAAACGAAG 57.422 30.769 15.93 0.00 0.00 3.79
875 876 5.376537 ACGCGAACTAAATAAAAACGAAGG 58.623 37.500 15.93 0.00 0.00 3.46
876 877 4.784550 CGCGAACTAAATAAAAACGAAGGG 59.215 41.667 0.00 0.00 0.00 3.95
877 878 5.389725 CGCGAACTAAATAAAAACGAAGGGA 60.390 40.000 0.00 0.00 0.00 4.20
878 879 6.019762 GCGAACTAAATAAAAACGAAGGGAG 58.980 40.000 0.00 0.00 0.00 4.30
914 916 1.445942 GCTGCTCCGGCTGGTATAA 59.554 57.895 12.43 0.00 39.59 0.98
915 917 0.880718 GCTGCTCCGGCTGGTATAAC 60.881 60.000 12.43 0.00 39.59 1.89
916 918 0.249911 CTGCTCCGGCTGGTATAACC 60.250 60.000 12.43 0.00 39.59 2.85
917 919 0.689745 TGCTCCGGCTGGTATAACCT 60.690 55.000 12.43 0.00 36.32 3.50
918 920 1.335145 GCTCCGGCTGGTATAACCTA 58.665 55.000 12.43 0.00 39.58 3.08
919 921 1.900486 GCTCCGGCTGGTATAACCTAT 59.100 52.381 12.43 0.00 39.58 2.57
920 922 2.302157 GCTCCGGCTGGTATAACCTATT 59.698 50.000 12.43 0.00 39.58 1.73
921 923 3.616802 GCTCCGGCTGGTATAACCTATTC 60.617 52.174 12.43 0.00 39.58 1.75
922 924 3.576982 CTCCGGCTGGTATAACCTATTCA 59.423 47.826 12.43 0.00 39.58 2.57
923 925 3.968649 TCCGGCTGGTATAACCTATTCAA 59.031 43.478 12.43 0.00 39.58 2.69
924 926 4.039973 TCCGGCTGGTATAACCTATTCAAG 59.960 45.833 12.43 0.00 39.58 3.02
925 927 4.039973 CCGGCTGGTATAACCTATTCAAGA 59.960 45.833 2.29 0.00 39.58 3.02
926 928 5.230942 CGGCTGGTATAACCTATTCAAGAG 58.769 45.833 0.00 0.00 39.58 2.85
927 929 5.010719 CGGCTGGTATAACCTATTCAAGAGA 59.989 44.000 0.00 0.00 39.58 3.10
928 930 6.462487 CGGCTGGTATAACCTATTCAAGAGAA 60.462 42.308 0.00 0.00 39.58 2.87
929 931 7.280356 GGCTGGTATAACCTATTCAAGAGAAA 58.720 38.462 0.00 0.00 39.58 2.52
930 932 7.773690 GGCTGGTATAACCTATTCAAGAGAAAA 59.226 37.037 0.00 0.00 39.58 2.29
931 933 9.174166 GCTGGTATAACCTATTCAAGAGAAAAA 57.826 33.333 0.00 0.00 39.58 1.94
963 966 6.578020 TTCAAACGTACAAGTCTGTTGTAG 57.422 37.500 0.00 0.00 35.77 2.74
965 968 6.794374 TCAAACGTACAAGTCTGTTGTAGTA 58.206 36.000 0.00 0.00 35.77 1.82
966 969 6.692681 TCAAACGTACAAGTCTGTTGTAGTAC 59.307 38.462 0.00 0.00 35.77 2.73
967 970 6.382869 AACGTACAAGTCTGTTGTAGTACT 57.617 37.500 0.00 0.00 35.77 2.73
968 971 6.382869 ACGTACAAGTCTGTTGTAGTACTT 57.617 37.500 0.00 0.00 35.77 2.24
969 972 6.799512 ACGTACAAGTCTGTTGTAGTACTTT 58.200 36.000 0.00 0.00 35.77 2.66
970 973 6.694411 ACGTACAAGTCTGTTGTAGTACTTTG 59.306 38.462 0.00 0.00 35.77 2.77
971 974 6.143438 CGTACAAGTCTGTTGTAGTACTTTGG 59.857 42.308 0.00 0.00 35.77 3.28
972 975 6.229936 ACAAGTCTGTTGTAGTACTTTGGA 57.770 37.500 0.00 0.00 28.57 3.53
973 976 6.281405 ACAAGTCTGTTGTAGTACTTTGGAG 58.719 40.000 0.00 0.00 28.57 3.86
974 977 6.097839 ACAAGTCTGTTGTAGTACTTTGGAGA 59.902 38.462 0.00 0.00 28.57 3.71
975 978 6.726490 AGTCTGTTGTAGTACTTTGGAGAA 57.274 37.500 0.00 0.00 0.00 2.87
976 979 7.120923 AGTCTGTTGTAGTACTTTGGAGAAA 57.879 36.000 0.00 0.00 0.00 2.52
977 980 7.210873 AGTCTGTTGTAGTACTTTGGAGAAAG 58.789 38.462 0.00 0.00 43.79 2.62
978 981 7.069578 AGTCTGTTGTAGTACTTTGGAGAAAGA 59.930 37.037 0.00 0.00 41.12 2.52
983 986 7.455641 TGTAGTACTTTGGAGAAAGAGAGAG 57.544 40.000 0.00 0.00 41.12 3.20
991 994 5.102953 TGGAGAAAGAGAGAGAGAGAGAG 57.897 47.826 0.00 0.00 0.00 3.20
1105 1111 3.022406 AGAAAGGTTATCGAGTACCGCT 58.978 45.455 11.75 8.68 39.46 5.52
1186 1192 4.681978 AGGAGCACCGTTCGTGGC 62.682 66.667 0.00 0.00 43.24 5.01
1263 1272 1.371183 CCCAAACGTGCTCTCCTCA 59.629 57.895 0.00 0.00 0.00 3.86
1266 1275 1.609061 CCAAACGTGCTCTCCTCACAT 60.609 52.381 0.00 0.00 34.27 3.21
1285 1294 1.996292 TGAAGTCTTCCTTGATCGCG 58.004 50.000 10.12 0.00 32.03 5.87
1292 1301 2.852495 TTCCTTGATCGCGCTGGGAC 62.852 60.000 5.56 0.00 0.00 4.46
1544 1589 1.131315 GGACAATCTTTCGGAGCAAGC 59.869 52.381 0.00 0.00 0.00 4.01
1623 1668 2.579787 GTCGTGGATCGCAGGACG 60.580 66.667 16.09 7.17 45.62 4.79
1688 1733 2.547211 CAGATGCTGAAAAGGCTATCCG 59.453 50.000 0.00 0.00 33.28 4.18
1792 1842 1.072489 TGTTTGGACGGCACTGGAATA 59.928 47.619 0.00 0.00 0.00 1.75
1793 1843 2.290641 TGTTTGGACGGCACTGGAATAT 60.291 45.455 0.00 0.00 0.00 1.28
1794 1844 3.055021 TGTTTGGACGGCACTGGAATATA 60.055 43.478 0.00 0.00 0.00 0.86
1795 1845 3.916359 TTGGACGGCACTGGAATATAA 57.084 42.857 0.00 0.00 0.00 0.98
1796 1846 4.431416 TTGGACGGCACTGGAATATAAT 57.569 40.909 0.00 0.00 0.00 1.28
1891 1941 5.365021 AGGAATAGGATCTCACCAAGTTG 57.635 43.478 0.00 0.00 0.00 3.16
1895 1945 7.037586 AGGAATAGGATCTCACCAAGTTGTTTA 60.038 37.037 1.45 0.00 0.00 2.01
1943 1993 8.887036 TGATCATGTACCTATGTGTTATTGAC 57.113 34.615 0.00 0.00 0.00 3.18
1944 1994 8.482128 TGATCATGTACCTATGTGTTATTGACA 58.518 33.333 0.00 0.00 35.42 3.58
2004 2054 0.623723 ATGGGTGGTTCGCATAACCT 59.376 50.000 16.57 0.00 45.67 3.50
2005 2055 0.402504 TGGGTGGTTCGCATAACCTT 59.597 50.000 16.57 0.00 40.88 3.50
2009 2059 1.737793 GTGGTTCGCATAACCTTCTGG 59.262 52.381 16.57 0.00 40.88 3.86
2285 2335 2.122768 CATGTCCTAGAGCTTCCCCTT 58.877 52.381 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.580867 CCAGTAGTCGCGCTGAGC 60.581 66.667 12.27 0.00 43.95 4.26
8 9 2.580867 GCCAGTAGTCGCGCTGAG 60.581 66.667 12.27 4.79 34.87 3.35
9 10 3.062466 AGCCAGTAGTCGCGCTGA 61.062 61.111 12.27 1.08 34.87 4.26
10 11 2.882777 CAGCCAGTAGTCGCGCTG 60.883 66.667 5.56 2.29 42.42 5.18
11 12 4.803426 GCAGCCAGTAGTCGCGCT 62.803 66.667 5.56 4.52 0.00 5.92
12 13 4.803426 AGCAGCCAGTAGTCGCGC 62.803 66.667 0.00 0.00 0.00 6.86
13 14 2.125912 AAGCAGCCAGTAGTCGCG 60.126 61.111 0.00 0.00 0.00 5.87
14 15 0.460987 ATGAAGCAGCCAGTAGTCGC 60.461 55.000 0.00 0.00 0.00 5.19
15 16 1.134995 TGATGAAGCAGCCAGTAGTCG 60.135 52.381 0.00 0.00 0.00 4.18
16 17 2.275318 GTGATGAAGCAGCCAGTAGTC 58.725 52.381 0.00 0.00 0.00 2.59
17 18 1.404717 CGTGATGAAGCAGCCAGTAGT 60.405 52.381 0.00 0.00 0.00 2.73
18 19 1.284657 CGTGATGAAGCAGCCAGTAG 58.715 55.000 0.00 0.00 0.00 2.57
19 20 0.108186 CCGTGATGAAGCAGCCAGTA 60.108 55.000 0.00 0.00 0.00 2.74
20 21 1.376424 CCGTGATGAAGCAGCCAGT 60.376 57.895 0.00 0.00 0.00 4.00
21 22 0.463295 ATCCGTGATGAAGCAGCCAG 60.463 55.000 0.00 0.00 0.00 4.85
22 23 0.745486 CATCCGTGATGAAGCAGCCA 60.745 55.000 7.82 0.00 42.09 4.75
23 24 0.462581 TCATCCGTGATGAAGCAGCC 60.463 55.000 12.41 0.00 44.70 4.85
24 25 3.070076 TCATCCGTGATGAAGCAGC 57.930 52.632 12.41 0.00 44.70 5.25
48 49 2.401766 GGGAAGTAGTCGTCGGCGA 61.402 63.158 8.66 8.66 45.79 5.54
49 50 2.101770 GGGAAGTAGTCGTCGGCG 59.898 66.667 1.15 1.15 39.92 6.46
50 51 2.493501 GGGGAAGTAGTCGTCGGC 59.506 66.667 0.00 0.00 0.00 5.54
51 52 1.746615 TCGGGGAAGTAGTCGTCGG 60.747 63.158 0.00 0.00 0.00 4.79
52 53 1.427020 GTCGGGGAAGTAGTCGTCG 59.573 63.158 0.00 0.00 0.00 5.12
53 54 1.021390 TCGTCGGGGAAGTAGTCGTC 61.021 60.000 0.00 0.00 0.00 4.20
54 55 1.003355 TCGTCGGGGAAGTAGTCGT 60.003 57.895 0.00 0.00 0.00 4.34
55 56 1.427020 GTCGTCGGGGAAGTAGTCG 59.573 63.158 0.00 0.00 0.00 4.18
56 57 1.021390 TCGTCGTCGGGGAAGTAGTC 61.021 60.000 1.55 0.00 37.69 2.59
57 58 1.003355 TCGTCGTCGGGGAAGTAGT 60.003 57.895 1.55 0.00 37.69 2.73
58 59 1.023513 AGTCGTCGTCGGGGAAGTAG 61.024 60.000 1.55 0.00 37.69 2.57
59 60 0.606401 AAGTCGTCGTCGGGGAAGTA 60.606 55.000 1.55 0.00 37.69 2.24
60 61 1.860484 GAAGTCGTCGTCGGGGAAGT 61.860 60.000 1.55 0.00 37.69 3.01
61 62 1.154073 GAAGTCGTCGTCGGGGAAG 60.154 63.158 1.55 0.00 37.69 3.46
62 63 1.174712 AAGAAGTCGTCGTCGGGGAA 61.175 55.000 1.55 0.00 37.69 3.97
63 64 1.580845 GAAGAAGTCGTCGTCGGGGA 61.581 60.000 1.55 0.00 37.69 4.81
64 65 1.154073 GAAGAAGTCGTCGTCGGGG 60.154 63.158 1.55 0.00 37.69 5.73
65 66 1.154073 GGAAGAAGTCGTCGTCGGG 60.154 63.158 1.55 0.00 35.75 5.14
66 67 1.154073 GGGAAGAAGTCGTCGTCGG 60.154 63.158 1.55 0.00 35.75 4.79
67 68 0.454620 CAGGGAAGAAGTCGTCGTCG 60.455 60.000 0.00 0.00 35.75 5.12
68 69 0.879765 TCAGGGAAGAAGTCGTCGTC 59.120 55.000 0.00 0.00 34.29 4.20
69 70 0.597072 GTCAGGGAAGAAGTCGTCGT 59.403 55.000 0.00 0.00 0.00 4.34
70 71 0.454620 CGTCAGGGAAGAAGTCGTCG 60.455 60.000 0.00 0.00 0.00 5.12
71 72 0.597072 ACGTCAGGGAAGAAGTCGTC 59.403 55.000 0.00 0.00 0.00 4.20
72 73 0.597072 GACGTCAGGGAAGAAGTCGT 59.403 55.000 11.55 0.00 37.30 4.34
73 74 0.109226 GGACGTCAGGGAAGAAGTCG 60.109 60.000 18.91 0.00 44.50 4.18
74 75 0.966920 TGGACGTCAGGGAAGAAGTC 59.033 55.000 18.91 0.00 43.38 3.01
75 76 0.680061 GTGGACGTCAGGGAAGAAGT 59.320 55.000 18.91 0.00 32.92 3.01
76 77 0.388649 CGTGGACGTCAGGGAAGAAG 60.389 60.000 18.91 0.00 34.11 2.85
77 78 0.824595 TCGTGGACGTCAGGGAAGAA 60.825 55.000 18.91 0.00 40.80 2.52
78 79 1.228337 TCGTGGACGTCAGGGAAGA 60.228 57.895 18.91 4.70 40.80 2.87
79 80 1.080705 GTCGTGGACGTCAGGGAAG 60.081 63.158 18.91 2.28 40.80 3.46
80 81 2.567497 GGTCGTGGACGTCAGGGAA 61.567 63.158 18.91 0.00 40.80 3.97
81 82 2.987547 GGTCGTGGACGTCAGGGA 60.988 66.667 18.91 7.72 40.80 4.20
82 83 2.989824 AGGTCGTGGACGTCAGGG 60.990 66.667 18.91 5.25 40.80 4.45
83 84 2.567049 GAGGTCGTGGACGTCAGG 59.433 66.667 18.91 9.33 43.95 3.86
84 85 1.924320 GAGGAGGTCGTGGACGTCAG 61.924 65.000 18.91 8.22 45.59 3.51
85 86 1.970114 GAGGAGGTCGTGGACGTCA 60.970 63.158 18.91 0.27 45.59 4.35
86 87 2.876219 GAGGAGGTCGTGGACGTC 59.124 66.667 7.13 7.13 43.84 4.34
87 88 3.054503 CGAGGAGGTCGTGGACGT 61.055 66.667 0.00 0.00 44.20 4.34
95 96 1.433879 CCATGTCGTCGAGGAGGTC 59.566 63.158 8.30 0.00 0.00 3.85
96 97 2.711922 GCCATGTCGTCGAGGAGGT 61.712 63.158 8.30 0.00 0.00 3.85
97 98 2.105128 GCCATGTCGTCGAGGAGG 59.895 66.667 8.30 7.75 0.00 4.30
98 99 1.226802 CTGCCATGTCGTCGAGGAG 60.227 63.158 8.30 0.00 0.00 3.69
99 100 2.710902 CCTGCCATGTCGTCGAGGA 61.711 63.158 3.17 3.17 0.00 3.71
100 101 2.202797 CCTGCCATGTCGTCGAGG 60.203 66.667 0.00 0.00 0.00 4.63
101 102 2.887568 GCCTGCCATGTCGTCGAG 60.888 66.667 0.00 0.00 0.00 4.04
102 103 4.794439 CGCCTGCCATGTCGTCGA 62.794 66.667 0.00 0.00 0.00 4.20
103 104 4.794439 TCGCCTGCCATGTCGTCG 62.794 66.667 0.00 0.00 0.00 5.12
104 105 2.887568 CTCGCCTGCCATGTCGTC 60.888 66.667 0.00 0.00 0.00 4.20
105 106 4.457496 CCTCGCCTGCCATGTCGT 62.457 66.667 0.00 0.00 0.00 4.34
106 107 4.147449 TCCTCGCCTGCCATGTCG 62.147 66.667 0.00 0.00 0.00 4.35
107 108 2.512515 GTCCTCGCCTGCCATGTC 60.513 66.667 0.00 0.00 0.00 3.06
108 109 3.321648 TGTCCTCGCCTGCCATGT 61.322 61.111 0.00 0.00 0.00 3.21
109 110 2.821366 GTGTCCTCGCCTGCCATG 60.821 66.667 0.00 0.00 0.00 3.66
110 111 4.101448 GGTGTCCTCGCCTGCCAT 62.101 66.667 0.00 0.00 40.73 4.40
114 115 4.436998 GGTCGGTGTCCTCGCCTG 62.437 72.222 0.00 0.00 41.65 4.85
118 119 3.296709 CTTGGGGTCGGTGTCCTCG 62.297 68.421 0.00 0.00 0.00 4.63
119 120 2.168666 GACTTGGGGTCGGTGTCCTC 62.169 65.000 0.00 0.00 35.07 3.71
120 121 2.122547 ACTTGGGGTCGGTGTCCT 60.123 61.111 0.00 0.00 0.00 3.85
121 122 2.346365 GACTTGGGGTCGGTGTCC 59.654 66.667 0.00 0.00 35.07 4.02
122 123 2.346365 GGACTTGGGGTCGGTGTC 59.654 66.667 0.00 0.00 45.35 3.67
123 124 2.446994 TGGACTTGGGGTCGGTGT 60.447 61.111 0.00 0.00 45.35 4.16
124 125 2.347490 CTGGACTTGGGGTCGGTG 59.653 66.667 0.00 0.00 45.35 4.94
125 126 3.637273 GCTGGACTTGGGGTCGGT 61.637 66.667 0.00 0.00 45.35 4.69
126 127 4.760047 CGCTGGACTTGGGGTCGG 62.760 72.222 0.00 0.00 45.35 4.79
128 129 3.553095 AAGCGCTGGACTTGGGGTC 62.553 63.158 12.58 0.00 43.79 4.46
129 130 3.553095 GAAGCGCTGGACTTGGGGT 62.553 63.158 12.58 0.00 0.00 4.95
130 131 2.747855 GAAGCGCTGGACTTGGGG 60.748 66.667 12.58 0.00 0.00 4.96
131 132 2.037136 CAGAAGCGCTGGACTTGGG 61.037 63.158 12.58 0.00 41.07 4.12
132 133 2.684843 GCAGAAGCGCTGGACTTGG 61.685 63.158 12.58 1.74 45.03 3.61
133 134 2.866028 GCAGAAGCGCTGGACTTG 59.134 61.111 12.58 6.60 45.03 3.16
143 144 2.688794 GGACAGCAGCAGCAGAAGC 61.689 63.158 3.17 0.00 45.49 3.86
144 145 2.039405 GGGACAGCAGCAGCAGAAG 61.039 63.158 3.17 0.00 45.49 2.85
145 146 2.033141 GGGACAGCAGCAGCAGAA 59.967 61.111 3.17 0.00 45.49 3.02
146 147 4.383861 CGGGACAGCAGCAGCAGA 62.384 66.667 3.17 0.00 45.49 4.26
147 148 3.300934 TACGGGACAGCAGCAGCAG 62.301 63.158 3.17 0.00 45.49 4.24
148 149 3.310307 TACGGGACAGCAGCAGCA 61.310 61.111 3.17 0.00 45.49 4.41
149 150 2.815647 GTACGGGACAGCAGCAGC 60.816 66.667 0.00 0.00 42.56 5.25
150 151 2.507102 CGTACGGGACAGCAGCAG 60.507 66.667 7.57 0.00 0.00 4.24
151 152 3.299977 ACGTACGGGACAGCAGCA 61.300 61.111 21.06 0.00 0.00 4.41
152 153 2.809601 CACGTACGGGACAGCAGC 60.810 66.667 21.06 0.00 0.00 5.25
153 154 1.006571 AACACGTACGGGACAGCAG 60.007 57.895 27.01 3.29 0.00 4.24
154 155 1.007038 GAACACGTACGGGACAGCA 60.007 57.895 27.01 0.00 0.00 4.41
155 156 0.319297 AAGAACACGTACGGGACAGC 60.319 55.000 27.01 9.90 0.00 4.40
156 157 2.995466 TAAGAACACGTACGGGACAG 57.005 50.000 27.01 8.39 0.00 3.51
157 158 3.084039 AGATAAGAACACGTACGGGACA 58.916 45.455 27.01 4.11 0.00 4.02
158 159 3.772060 AGATAAGAACACGTACGGGAC 57.228 47.619 27.01 17.17 0.00 4.46
159 160 4.380867 GGAAAGATAAGAACACGTACGGGA 60.381 45.833 27.01 0.20 0.00 5.14
160 161 3.861689 GGAAAGATAAGAACACGTACGGG 59.138 47.826 17.69 17.69 0.00 5.28
161 162 4.561606 CAGGAAAGATAAGAACACGTACGG 59.438 45.833 21.06 11.05 0.00 4.02
162 163 5.159209 ACAGGAAAGATAAGAACACGTACG 58.841 41.667 15.01 15.01 0.00 3.67
163 164 8.524870 TTAACAGGAAAGATAAGAACACGTAC 57.475 34.615 0.00 0.00 0.00 3.67
164 165 9.199982 CTTTAACAGGAAAGATAAGAACACGTA 57.800 33.333 0.00 0.00 38.48 3.57
165 166 8.084590 CTTTAACAGGAAAGATAAGAACACGT 57.915 34.615 0.00 0.00 38.48 4.49
182 183 2.223711 ACTGCGGCAAAACCTTTAACAG 60.224 45.455 3.44 0.00 35.61 3.16
183 184 1.751924 ACTGCGGCAAAACCTTTAACA 59.248 42.857 3.44 0.00 35.61 2.41
184 185 2.502213 ACTGCGGCAAAACCTTTAAC 57.498 45.000 3.44 0.00 35.61 2.01
185 186 2.223852 GGAACTGCGGCAAAACCTTTAA 60.224 45.455 3.44 0.00 35.61 1.52
186 187 1.338655 GGAACTGCGGCAAAACCTTTA 59.661 47.619 3.44 0.00 35.61 1.85
187 188 0.104120 GGAACTGCGGCAAAACCTTT 59.896 50.000 3.44 0.00 35.61 3.11
188 189 0.755327 AGGAACTGCGGCAAAACCTT 60.755 50.000 3.44 0.00 37.18 3.50
189 190 0.755327 AAGGAACTGCGGCAAAACCT 60.755 50.000 3.44 9.67 40.86 3.50
190 191 0.597377 CAAGGAACTGCGGCAAAACC 60.597 55.000 3.44 7.46 40.86 3.27
191 192 0.102300 ACAAGGAACTGCGGCAAAAC 59.898 50.000 3.44 0.00 40.86 2.43
192 193 0.383949 GACAAGGAACTGCGGCAAAA 59.616 50.000 3.44 0.00 40.86 2.44
193 194 1.452145 GGACAAGGAACTGCGGCAAA 61.452 55.000 3.44 0.00 40.86 3.68
194 195 1.896660 GGACAAGGAACTGCGGCAA 60.897 57.895 3.44 0.00 40.86 4.52
195 196 1.476845 TAGGACAAGGAACTGCGGCA 61.477 55.000 1.29 1.29 40.86 5.69
196 197 1.019805 GTAGGACAAGGAACTGCGGC 61.020 60.000 0.00 0.00 40.86 6.53
197 198 0.320374 TGTAGGACAAGGAACTGCGG 59.680 55.000 0.00 0.00 40.86 5.69
198 199 1.270094 TGTGTAGGACAAGGAACTGCG 60.270 52.381 0.00 0.00 40.86 5.18
199 200 2.543777 TGTGTAGGACAAGGAACTGC 57.456 50.000 0.00 0.00 40.86 4.40
200 201 4.271696 TCATGTGTAGGACAAGGAACTG 57.728 45.455 0.00 0.00 40.86 3.16
201 202 5.129485 CCTATCATGTGTAGGACAAGGAACT 59.871 44.000 16.93 0.00 41.01 3.01
202 203 5.104900 ACCTATCATGTGTAGGACAAGGAAC 60.105 44.000 24.27 0.00 41.01 3.62
203 204 5.030147 ACCTATCATGTGTAGGACAAGGAA 58.970 41.667 24.27 0.00 41.01 3.36
204 205 4.620723 ACCTATCATGTGTAGGACAAGGA 58.379 43.478 24.27 0.00 41.01 3.36
205 206 5.129485 AGAACCTATCATGTGTAGGACAAGG 59.871 44.000 24.27 8.10 41.01 3.61
206 207 6.227298 AGAACCTATCATGTGTAGGACAAG 57.773 41.667 24.27 6.70 41.01 3.16
207 208 6.895756 AGTAGAACCTATCATGTGTAGGACAA 59.104 38.462 24.27 10.51 41.01 3.18
208 209 6.432581 AGTAGAACCTATCATGTGTAGGACA 58.567 40.000 24.27 10.05 41.01 4.02
209 210 6.963083 AGTAGAACCTATCATGTGTAGGAC 57.037 41.667 24.27 18.52 41.01 3.85
210 211 7.123383 TGAAGTAGAACCTATCATGTGTAGGA 58.877 38.462 24.27 7.53 41.01 2.94
211 212 7.348080 TGAAGTAGAACCTATCATGTGTAGG 57.652 40.000 19.01 19.01 43.54 3.18
216 217 8.754080 GCCTATATGAAGTAGAACCTATCATGT 58.246 37.037 0.00 0.00 33.17 3.21
217 218 8.976353 AGCCTATATGAAGTAGAACCTATCATG 58.024 37.037 0.00 0.00 33.17 3.07
219 220 9.463902 GTAGCCTATATGAAGTAGAACCTATCA 57.536 37.037 0.00 0.00 0.00 2.15
220 221 9.689501 AGTAGCCTATATGAAGTAGAACCTATC 57.310 37.037 0.00 0.00 0.00 2.08
222 223 9.298250 CAAGTAGCCTATATGAAGTAGAACCTA 57.702 37.037 0.00 0.00 0.00 3.08
223 224 7.256012 GCAAGTAGCCTATATGAAGTAGAACCT 60.256 40.741 0.00 0.00 37.23 3.50
224 225 6.869388 GCAAGTAGCCTATATGAAGTAGAACC 59.131 42.308 0.00 0.00 37.23 3.62
225 226 7.876896 GCAAGTAGCCTATATGAAGTAGAAC 57.123 40.000 0.00 0.00 37.23 3.01
241 242 4.314740 AGCAGACAGTATAGCAAGTAGC 57.685 45.455 0.00 0.00 46.19 3.58
242 243 7.708051 TCTAAAGCAGACAGTATAGCAAGTAG 58.292 38.462 0.00 0.00 0.00 2.57
243 244 7.640597 TCTAAAGCAGACAGTATAGCAAGTA 57.359 36.000 0.00 0.00 0.00 2.24
244 245 6.531503 TCTAAAGCAGACAGTATAGCAAGT 57.468 37.500 0.00 0.00 0.00 3.16
245 246 9.138062 CATATCTAAAGCAGACAGTATAGCAAG 57.862 37.037 0.00 0.00 35.62 4.01
246 247 8.860088 TCATATCTAAAGCAGACAGTATAGCAA 58.140 33.333 0.00 0.00 35.62 3.91
247 248 8.409358 TCATATCTAAAGCAGACAGTATAGCA 57.591 34.615 0.00 0.00 35.62 3.49
251 252 8.474025 GCCTATCATATCTAAAGCAGACAGTAT 58.526 37.037 0.00 0.00 35.62 2.12
252 253 7.671819 AGCCTATCATATCTAAAGCAGACAGTA 59.328 37.037 0.00 0.00 35.62 2.74
253 254 6.496565 AGCCTATCATATCTAAAGCAGACAGT 59.503 38.462 0.00 0.00 35.62 3.55
254 255 6.934056 AGCCTATCATATCTAAAGCAGACAG 58.066 40.000 0.00 0.00 35.62 3.51
255 256 6.924913 AGCCTATCATATCTAAAGCAGACA 57.075 37.500 0.00 0.00 35.62 3.41
256 257 6.970043 CGTAGCCTATCATATCTAAAGCAGAC 59.030 42.308 0.00 0.00 35.62 3.51
257 258 6.095580 CCGTAGCCTATCATATCTAAAGCAGA 59.904 42.308 0.00 0.00 37.79 4.26
258 259 6.127591 ACCGTAGCCTATCATATCTAAAGCAG 60.128 42.308 0.00 0.00 0.00 4.24
259 260 5.715279 ACCGTAGCCTATCATATCTAAAGCA 59.285 40.000 0.00 0.00 0.00 3.91
260 261 6.210287 ACCGTAGCCTATCATATCTAAAGC 57.790 41.667 0.00 0.00 0.00 3.51
261 262 7.827701 TGAACCGTAGCCTATCATATCTAAAG 58.172 38.462 0.00 0.00 0.00 1.85
262 263 7.770366 TGAACCGTAGCCTATCATATCTAAA 57.230 36.000 0.00 0.00 0.00 1.85
263 264 7.956328 ATGAACCGTAGCCTATCATATCTAA 57.044 36.000 0.00 0.00 0.00 2.10
265 266 9.815306 ATATATGAACCGTAGCCTATCATATCT 57.185 33.333 8.24 0.00 40.81 1.98
266 267 9.847706 CATATATGAACCGTAGCCTATCATATC 57.152 37.037 6.92 0.00 40.81 1.63
267 268 8.307483 GCATATATGAACCGTAGCCTATCATAT 58.693 37.037 17.10 9.41 42.92 1.78
268 269 7.286775 TGCATATATGAACCGTAGCCTATCATA 59.713 37.037 17.10 0.00 37.38 2.15
269 270 6.098266 TGCATATATGAACCGTAGCCTATCAT 59.902 38.462 17.10 0.00 35.15 2.45
270 271 5.420739 TGCATATATGAACCGTAGCCTATCA 59.579 40.000 17.10 0.00 0.00 2.15
271 272 5.902681 TGCATATATGAACCGTAGCCTATC 58.097 41.667 17.10 0.00 0.00 2.08
272 273 5.656859 TCTGCATATATGAACCGTAGCCTAT 59.343 40.000 17.10 0.00 0.00 2.57
273 274 5.014202 TCTGCATATATGAACCGTAGCCTA 58.986 41.667 17.10 0.00 0.00 3.93
274 275 3.832490 TCTGCATATATGAACCGTAGCCT 59.168 43.478 17.10 0.00 0.00 4.58
275 276 4.188247 TCTGCATATATGAACCGTAGCC 57.812 45.455 17.10 0.00 0.00 3.93
276 277 4.092091 GCTTCTGCATATATGAACCGTAGC 59.908 45.833 17.10 11.71 39.41 3.58
277 278 5.473931 AGCTTCTGCATATATGAACCGTAG 58.526 41.667 17.10 6.33 42.74 3.51
278 279 5.468540 AGCTTCTGCATATATGAACCGTA 57.531 39.130 17.10 0.00 42.74 4.02
279 280 4.342862 AGCTTCTGCATATATGAACCGT 57.657 40.909 17.10 0.00 42.74 4.83
280 281 6.974932 AATAGCTTCTGCATATATGAACCG 57.025 37.500 17.10 0.00 42.74 4.44
281 282 8.669243 GGTAAATAGCTTCTGCATATATGAACC 58.331 37.037 17.10 0.00 42.74 3.62
282 283 9.442047 AGGTAAATAGCTTCTGCATATATGAAC 57.558 33.333 17.10 0.19 42.74 3.18
296 297 6.859112 TGACAGAGAGAAGGTAAATAGCTT 57.141 37.500 4.66 4.66 45.70 3.74
297 298 6.859112 TTGACAGAGAGAAGGTAAATAGCT 57.141 37.500 0.00 0.00 35.17 3.32
298 299 7.412020 CGTTTTGACAGAGAGAAGGTAAATAGC 60.412 40.741 0.00 0.00 0.00 2.97
299 300 7.599245 ACGTTTTGACAGAGAGAAGGTAAATAG 59.401 37.037 0.00 0.00 0.00 1.73
300 301 7.439381 ACGTTTTGACAGAGAGAAGGTAAATA 58.561 34.615 0.00 0.00 0.00 1.40
301 302 6.289064 ACGTTTTGACAGAGAGAAGGTAAAT 58.711 36.000 0.00 0.00 0.00 1.40
302 303 5.667466 ACGTTTTGACAGAGAGAAGGTAAA 58.333 37.500 0.00 0.00 0.00 2.01
303 304 5.272283 ACGTTTTGACAGAGAGAAGGTAA 57.728 39.130 0.00 0.00 0.00 2.85
304 305 4.931661 ACGTTTTGACAGAGAGAAGGTA 57.068 40.909 0.00 0.00 0.00 3.08
305 306 3.821421 ACGTTTTGACAGAGAGAAGGT 57.179 42.857 0.00 0.00 0.00 3.50
306 307 5.346281 GTCATACGTTTTGACAGAGAGAAGG 59.654 44.000 20.30 0.00 42.43 3.46
307 308 6.153067 AGTCATACGTTTTGACAGAGAGAAG 58.847 40.000 24.53 0.00 44.73 2.85
308 309 6.085555 AGTCATACGTTTTGACAGAGAGAA 57.914 37.500 24.53 0.00 44.73 2.87
309 310 5.707242 AGTCATACGTTTTGACAGAGAGA 57.293 39.130 24.53 0.00 44.73 3.10
310 311 5.692204 ACAAGTCATACGTTTTGACAGAGAG 59.308 40.000 24.53 14.98 44.73 3.20
311 312 5.597806 ACAAGTCATACGTTTTGACAGAGA 58.402 37.500 24.53 0.00 44.73 3.10
312 313 5.907197 ACAAGTCATACGTTTTGACAGAG 57.093 39.130 24.53 17.85 44.73 3.35
313 314 6.671614 AAACAAGTCATACGTTTTGACAGA 57.328 33.333 24.53 0.00 44.73 3.41
314 315 9.103048 GATAAAACAAGTCATACGTTTTGACAG 57.897 33.333 24.53 19.79 44.73 3.51
315 316 8.832521 AGATAAAACAAGTCATACGTTTTGACA 58.167 29.630 24.53 9.58 44.73 3.58
316 317 9.314501 GAGATAAAACAAGTCATACGTTTTGAC 57.685 33.333 18.52 18.52 41.56 3.18
317 318 9.268268 AGAGATAAAACAAGTCATACGTTTTGA 57.732 29.630 0.00 0.00 41.56 2.69
318 319 9.878599 AAGAGATAAAACAAGTCATACGTTTTG 57.121 29.630 0.00 0.00 41.56 2.44
320 321 9.490379 AGAAGAGATAAAACAAGTCATACGTTT 57.510 29.630 0.00 0.00 34.42 3.60
390 391 9.806203 CTGTTGGAAATATGAGCAATTTATCAA 57.194 29.630 0.00 0.00 0.00 2.57
391 392 8.415553 CCTGTTGGAAATATGAGCAATTTATCA 58.584 33.333 0.00 0.00 34.57 2.15
392 393 7.383300 GCCTGTTGGAAATATGAGCAATTTATC 59.617 37.037 0.00 0.00 34.57 1.75
393 394 7.212274 GCCTGTTGGAAATATGAGCAATTTAT 58.788 34.615 0.00 0.00 34.57 1.40
394 395 6.572519 GCCTGTTGGAAATATGAGCAATTTA 58.427 36.000 0.00 0.00 34.57 1.40
395 396 5.422145 GCCTGTTGGAAATATGAGCAATTT 58.578 37.500 0.00 0.00 34.57 1.82
396 397 4.440525 CGCCTGTTGGAAATATGAGCAATT 60.441 41.667 0.00 0.00 34.57 2.32
397 398 3.067180 CGCCTGTTGGAAATATGAGCAAT 59.933 43.478 0.00 0.00 34.57 3.56
398 399 2.423185 CGCCTGTTGGAAATATGAGCAA 59.577 45.455 0.00 0.00 34.57 3.91
399 400 2.016318 CGCCTGTTGGAAATATGAGCA 58.984 47.619 0.00 0.00 34.57 4.26
400 401 1.334869 CCGCCTGTTGGAAATATGAGC 59.665 52.381 0.00 0.00 34.57 4.26
401 402 1.334869 GCCGCCTGTTGGAAATATGAG 59.665 52.381 0.00 0.00 34.57 2.90
402 403 1.388547 GCCGCCTGTTGGAAATATGA 58.611 50.000 0.00 0.00 34.57 2.15
403 404 0.029300 CGCCGCCTGTTGGAAATATG 59.971 55.000 0.00 0.00 34.57 1.78
404 405 1.101049 CCGCCGCCTGTTGGAAATAT 61.101 55.000 0.00 0.00 34.57 1.28
405 406 1.747367 CCGCCGCCTGTTGGAAATA 60.747 57.895 0.00 0.00 34.57 1.40
406 407 3.061848 CCGCCGCCTGTTGGAAAT 61.062 61.111 0.00 0.00 34.57 2.17
419 420 3.645268 AAAGTCCATCTGCCCCGCC 62.645 63.158 0.00 0.00 0.00 6.13
420 421 2.044946 AAAGTCCATCTGCCCCGC 60.045 61.111 0.00 0.00 0.00 6.13
421 422 1.750399 CCAAAGTCCATCTGCCCCG 60.750 63.158 0.00 0.00 0.00 5.73
422 423 0.251787 AACCAAAGTCCATCTGCCCC 60.252 55.000 0.00 0.00 0.00 5.80
423 424 1.632589 AAACCAAAGTCCATCTGCCC 58.367 50.000 0.00 0.00 0.00 5.36
424 425 3.421844 ACTAAACCAAAGTCCATCTGCC 58.578 45.455 0.00 0.00 0.00 4.85
425 426 3.125316 CGACTAAACCAAAGTCCATCTGC 59.875 47.826 0.00 0.00 40.24 4.26
426 427 3.125316 GCGACTAAACCAAAGTCCATCTG 59.875 47.826 0.00 0.00 40.24 2.90
427 428 3.335579 GCGACTAAACCAAAGTCCATCT 58.664 45.455 0.00 0.00 40.24 2.90
428 429 2.418976 GGCGACTAAACCAAAGTCCATC 59.581 50.000 0.00 0.00 40.24 3.51
429 430 2.433436 GGCGACTAAACCAAAGTCCAT 58.567 47.619 0.00 0.00 40.24 3.41
430 431 1.543871 GGGCGACTAAACCAAAGTCCA 60.544 52.381 0.00 0.00 40.24 4.02
431 432 1.162698 GGGCGACTAAACCAAAGTCC 58.837 55.000 0.00 0.00 40.24 3.85
432 433 0.794473 CGGGCGACTAAACCAAAGTC 59.206 55.000 0.00 0.00 40.01 3.01
433 434 1.232621 GCGGGCGACTAAACCAAAGT 61.233 55.000 0.00 0.00 0.00 2.66
434 435 0.953960 AGCGGGCGACTAAACCAAAG 60.954 55.000 0.00 0.00 0.00 2.77
435 436 1.071814 AGCGGGCGACTAAACCAAA 59.928 52.632 0.00 0.00 0.00 3.28
436 437 1.669760 CAGCGGGCGACTAAACCAA 60.670 57.895 0.00 0.00 0.00 3.67
437 438 2.047655 CAGCGGGCGACTAAACCA 60.048 61.111 0.00 0.00 0.00 3.67
438 439 2.818274 CCAGCGGGCGACTAAACC 60.818 66.667 0.00 0.00 0.00 3.27
490 491 1.889530 CTTCTTCCTCCTTCGCCGGT 61.890 60.000 1.90 0.00 0.00 5.28
492 493 1.811679 GCTTCTTCCTCCTTCGCCG 60.812 63.158 0.00 0.00 0.00 6.46
512 513 0.030092 CCAATCCCCCTCCTCACCTA 60.030 60.000 0.00 0.00 0.00 3.08
520 521 2.165357 ATTTCTTGCCAATCCCCCTC 57.835 50.000 0.00 0.00 0.00 4.30
521 522 2.647846 AATTTCTTGCCAATCCCCCT 57.352 45.000 0.00 0.00 0.00 4.79
530 531 5.700832 CCCTTCTGGTTTTAAATTTCTTGCC 59.299 40.000 0.00 0.00 0.00 4.52
593 594 4.080299 CCTTAGCTCTGGTTTGGGAATAGT 60.080 45.833 0.00 0.00 0.00 2.12
596 597 2.649816 ACCTTAGCTCTGGTTTGGGAAT 59.350 45.455 4.88 0.00 31.62 3.01
602 603 5.088026 AGAGTAGAACCTTAGCTCTGGTTT 58.912 41.667 19.99 13.78 45.48 3.27
620 621 9.136952 GCAGAGTAAATAAAAACGAAGAGAGTA 57.863 33.333 0.00 0.00 0.00 2.59
621 622 7.656137 TGCAGAGTAAATAAAAACGAAGAGAGT 59.344 33.333 0.00 0.00 0.00 3.24
622 623 8.018677 TGCAGAGTAAATAAAAACGAAGAGAG 57.981 34.615 0.00 0.00 0.00 3.20
623 624 7.956420 TGCAGAGTAAATAAAAACGAAGAGA 57.044 32.000 0.00 0.00 0.00 3.10
641 642 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
642 643 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
643 644 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
666 667 7.540299 ACTTGGTCAAATTTTACGAAGTTTGA 58.460 30.769 20.61 5.93 44.28 2.69
667 668 7.749539 ACTTGGTCAAATTTTACGAAGTTTG 57.250 32.000 20.61 5.37 40.39 2.93
714 715 9.898152 TCACATCATGTAGATTTGTTATGGTAA 57.102 29.630 0.00 0.00 36.15 2.85
715 716 9.898152 TTCACATCATGTAGATTTGTTATGGTA 57.102 29.630 0.00 0.00 36.15 3.25
716 717 8.806429 TTCACATCATGTAGATTTGTTATGGT 57.194 30.769 0.00 0.00 36.15 3.55
717 718 9.726232 CTTTCACATCATGTAGATTTGTTATGG 57.274 33.333 0.00 0.00 36.15 2.74
721 722 9.283768 TGTACTTTCACATCATGTAGATTTGTT 57.716 29.630 0.00 0.00 36.15 2.83
722 723 8.846943 TGTACTTTCACATCATGTAGATTTGT 57.153 30.769 0.00 0.00 36.15 2.83
725 726 9.671279 TGAATGTACTTTCACATCATGTAGATT 57.329 29.630 17.62 0.00 38.19 2.40
726 727 9.671279 TTGAATGTACTTTCACATCATGTAGAT 57.329 29.630 20.40 0.00 38.19 1.98
727 728 9.671279 ATTGAATGTACTTTCACATCATGTAGA 57.329 29.630 20.40 5.86 38.19 2.59
809 810 9.516314 GTCAAGCTTTGTAAATTTTGACTAAGT 57.484 29.630 17.59 0.00 37.71 2.24
810 811 9.736023 AGTCAAGCTTTGTAAATTTTGACTAAG 57.264 29.630 21.87 11.48 42.77 2.18
836 837 3.327626 TCGCGTATTAGCTTTGGTCAAA 58.672 40.909 5.77 0.00 34.40 2.69
837 838 2.962125 TCGCGTATTAGCTTTGGTCAA 58.038 42.857 5.77 0.00 34.40 3.18
838 839 2.658373 TCGCGTATTAGCTTTGGTCA 57.342 45.000 5.77 0.00 34.40 4.02
839 840 2.928116 AGTTCGCGTATTAGCTTTGGTC 59.072 45.455 5.77 0.00 34.40 4.02
840 841 2.968675 AGTTCGCGTATTAGCTTTGGT 58.031 42.857 5.77 0.00 34.40 3.67
841 842 5.459110 TTTAGTTCGCGTATTAGCTTTGG 57.541 39.130 5.77 0.00 34.40 3.28
842 843 9.480538 TTTTATTTAGTTCGCGTATTAGCTTTG 57.519 29.630 5.77 0.00 34.40 2.77
844 845 9.481800 GTTTTTATTTAGTTCGCGTATTAGCTT 57.518 29.630 5.77 0.00 34.40 3.74
845 846 7.842721 CGTTTTTATTTAGTTCGCGTATTAGCT 59.157 33.333 5.77 0.00 34.40 3.32
846 847 7.840797 TCGTTTTTATTTAGTTCGCGTATTAGC 59.159 33.333 5.77 0.00 0.00 3.09
847 848 9.674208 TTCGTTTTTATTTAGTTCGCGTATTAG 57.326 29.630 5.77 0.00 0.00 1.73
848 849 9.674208 CTTCGTTTTTATTTAGTTCGCGTATTA 57.326 29.630 5.77 0.00 0.00 0.98
849 850 7.689400 CCTTCGTTTTTATTTAGTTCGCGTATT 59.311 33.333 5.77 0.00 0.00 1.89
850 851 7.175410 CCTTCGTTTTTATTTAGTTCGCGTAT 58.825 34.615 5.77 0.00 0.00 3.06
851 852 6.400940 CCCTTCGTTTTTATTTAGTTCGCGTA 60.401 38.462 5.77 0.00 0.00 4.42
852 853 5.376537 CCTTCGTTTTTATTTAGTTCGCGT 58.623 37.500 5.77 0.00 0.00 6.01
853 854 4.784550 CCCTTCGTTTTTATTTAGTTCGCG 59.215 41.667 0.00 0.00 0.00 5.87
854 855 5.930405 TCCCTTCGTTTTTATTTAGTTCGC 58.070 37.500 0.00 0.00 0.00 4.70
855 856 7.125536 ACTCCCTTCGTTTTTATTTAGTTCG 57.874 36.000 0.00 0.00 0.00 3.95
864 865 9.868277 TTCGTTTATATACTCCCTTCGTTTTTA 57.132 29.630 0.00 0.00 0.00 1.52
865 866 8.776376 TTCGTTTATATACTCCCTTCGTTTTT 57.224 30.769 0.00 0.00 0.00 1.94
866 867 8.253113 TCTTCGTTTATATACTCCCTTCGTTTT 58.747 33.333 0.00 0.00 0.00 2.43
867 868 7.704047 GTCTTCGTTTATATACTCCCTTCGTTT 59.296 37.037 0.00 0.00 0.00 3.60
868 869 7.067981 AGTCTTCGTTTATATACTCCCTTCGTT 59.932 37.037 0.00 0.00 0.00 3.85
869 870 6.545298 AGTCTTCGTTTATATACTCCCTTCGT 59.455 38.462 0.00 0.00 0.00 3.85
870 871 6.856938 CAGTCTTCGTTTATATACTCCCTTCG 59.143 42.308 0.00 0.00 0.00 3.79
871 872 7.146648 CCAGTCTTCGTTTATATACTCCCTTC 58.853 42.308 0.00 0.00 0.00 3.46
872 873 6.462628 GCCAGTCTTCGTTTATATACTCCCTT 60.463 42.308 0.00 0.00 0.00 3.95
873 874 5.010820 GCCAGTCTTCGTTTATATACTCCCT 59.989 44.000 0.00 0.00 0.00 4.20
874 875 5.010820 AGCCAGTCTTCGTTTATATACTCCC 59.989 44.000 0.00 0.00 0.00 4.30
875 876 5.921408 CAGCCAGTCTTCGTTTATATACTCC 59.079 44.000 0.00 0.00 0.00 3.85
876 877 5.402867 GCAGCCAGTCTTCGTTTATATACTC 59.597 44.000 0.00 0.00 0.00 2.59
877 878 5.069251 AGCAGCCAGTCTTCGTTTATATACT 59.931 40.000 0.00 0.00 0.00 2.12
878 879 5.290386 AGCAGCCAGTCTTCGTTTATATAC 58.710 41.667 0.00 0.00 0.00 1.47
931 933 8.126700 CAGACTTGTACGTTTGAATAGGTTTTT 58.873 33.333 0.00 0.00 0.00 1.94
932 934 7.281549 ACAGACTTGTACGTTTGAATAGGTTTT 59.718 33.333 0.00 0.00 35.25 2.43
933 935 6.764560 ACAGACTTGTACGTTTGAATAGGTTT 59.235 34.615 0.00 0.00 35.25 3.27
934 936 6.285990 ACAGACTTGTACGTTTGAATAGGTT 58.714 36.000 0.00 0.00 35.25 3.50
948 950 7.286087 TCTCCAAAGTACTACAACAGACTTGTA 59.714 37.037 0.00 0.00 36.23 2.41
963 966 6.657541 TCTCTCTCTCTCTTTCTCCAAAGTAC 59.342 42.308 0.00 0.00 40.16 2.73
965 968 5.640147 TCTCTCTCTCTCTTTCTCCAAAGT 58.360 41.667 0.00 0.00 40.16 2.66
966 969 5.945784 TCTCTCTCTCTCTCTTTCTCCAAAG 59.054 44.000 0.00 0.00 40.56 2.77
967 970 5.886609 TCTCTCTCTCTCTCTTTCTCCAAA 58.113 41.667 0.00 0.00 0.00 3.28
968 971 5.250543 TCTCTCTCTCTCTCTCTTTCTCCAA 59.749 44.000 0.00 0.00 0.00 3.53
969 972 4.782691 TCTCTCTCTCTCTCTCTTTCTCCA 59.217 45.833 0.00 0.00 0.00 3.86
970 973 5.129485 TCTCTCTCTCTCTCTCTCTTTCTCC 59.871 48.000 0.00 0.00 0.00 3.71
971 974 6.097554 TCTCTCTCTCTCTCTCTCTCTTTCTC 59.902 46.154 0.00 0.00 0.00 2.87
972 975 5.960811 TCTCTCTCTCTCTCTCTCTCTTTCT 59.039 44.000 0.00 0.00 0.00 2.52
973 976 6.227298 TCTCTCTCTCTCTCTCTCTCTTTC 57.773 45.833 0.00 0.00 0.00 2.62
974 977 5.396213 GCTCTCTCTCTCTCTCTCTCTCTTT 60.396 48.000 0.00 0.00 0.00 2.52
975 978 4.100808 GCTCTCTCTCTCTCTCTCTCTCTT 59.899 50.000 0.00 0.00 0.00 2.85
976 979 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
977 980 3.244044 GGCTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
978 981 2.703007 GGCTCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 0.00 3.10
983 986 2.233271 CCATGGCTCTCTCTCTCTCTC 58.767 57.143 0.00 0.00 0.00 3.20
991 994 0.878086 GTAAGCGCCATGGCTCTCTC 60.878 60.000 33.07 21.72 43.93 3.20
1015 1018 3.069318 GTCGCCCTCCTCCTTCGT 61.069 66.667 0.00 0.00 0.00 3.85
1016 1019 4.194720 CGTCGCCCTCCTCCTTCG 62.195 72.222 0.00 0.00 0.00 3.79
1017 1020 1.677637 AATCGTCGCCCTCCTCCTTC 61.678 60.000 0.00 0.00 0.00 3.46
1105 1111 2.943036 AAAACCACGCCCTCTTCTAA 57.057 45.000 0.00 0.00 0.00 2.10
1179 1185 4.323477 CCGAACCTGGGCCACGAA 62.323 66.667 15.02 0.00 0.00 3.85
1255 1264 3.768757 AGGAAGACTTCATGTGAGGAGAG 59.231 47.826 16.85 0.00 0.00 3.20
1263 1272 3.265791 GCGATCAAGGAAGACTTCATGT 58.734 45.455 16.85 6.36 37.29 3.21
1266 1275 1.996292 CGCGATCAAGGAAGACTTCA 58.004 50.000 16.85 0.00 37.29 3.02
1544 1589 0.176680 CAGAAGGTCTGGATCACGGG 59.823 60.000 0.00 0.00 40.71 5.28
1596 1641 1.742900 GATCCACGACGACATGTGCG 61.743 60.000 1.15 9.63 34.77 5.34
1607 1652 3.822192 CCGTCCTGCGATCCACGA 61.822 66.667 0.00 0.00 45.77 4.35
1623 1668 1.410224 CCAAACCCCTTGCTAGATCCC 60.410 57.143 0.00 0.00 33.27 3.85
1665 1710 1.755179 TAGCCTTTTCAGCATCTGCC 58.245 50.000 0.00 0.00 43.38 4.85
1688 1733 1.588139 CCGTAACGATCGAGGGTGC 60.588 63.158 24.34 6.51 0.00 5.01
1792 1842 1.000283 CGCCCAGCTCTCGAAGATTAT 60.000 52.381 0.00 0.00 33.89 1.28
1793 1843 0.385751 CGCCCAGCTCTCGAAGATTA 59.614 55.000 0.00 0.00 33.89 1.75
1794 1844 1.142748 CGCCCAGCTCTCGAAGATT 59.857 57.895 0.00 0.00 33.89 2.40
1795 1845 2.010582 GACGCCCAGCTCTCGAAGAT 62.011 60.000 5.88 0.00 33.89 2.40
1796 1846 2.676822 ACGCCCAGCTCTCGAAGA 60.677 61.111 5.88 0.00 0.00 2.87
1960 2010 7.770366 TTTCTTTAAGGGAGTAAAATGGACC 57.230 36.000 0.00 0.00 0.00 4.46
2438 2488 0.252479 CAGCTTCAGAGGAGCACCAT 59.748 55.000 2.07 0.00 38.94 3.55
2600 2650 2.722705 CCCCCTAGGTGAGCCCCTA 61.723 68.421 8.29 0.00 35.97 3.53
2628 2678 1.541620 ACTTCTGGTCCCCCTTCCC 60.542 63.158 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.