Multiple sequence alignment - TraesCS1A01G257800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G257800 chr1A 100.000 4007 0 0 1 4007 449810986 449814992 0.000000e+00 7400.0
1 TraesCS1A01G257800 chr1A 83.377 770 116 11 2134 2894 449624989 449625755 0.000000e+00 702.0
2 TraesCS1A01G257800 chr1A 82.701 422 62 8 1166 1586 449623824 449624235 8.180000e-97 364.0
3 TraesCS1A01G257800 chr1A 75.520 817 159 30 1165 1959 449822383 449821586 2.940000e-96 363.0
4 TraesCS1A01G257800 chr1A 84.507 355 49 6 1617 1968 449624311 449624662 2.960000e-91 346.0
5 TraesCS1A01G257800 chr1A 89.720 107 11 0 3901 4007 12595608 12595714 1.940000e-28 137.0
6 TraesCS1A01G257800 chr1B 94.934 2487 94 18 612 3080 471024128 471026600 0.000000e+00 3866.0
7 TraesCS1A01G257800 chr1B 83.119 776 115 14 2130 2894 470912662 470913432 0.000000e+00 693.0
8 TraesCS1A01G257800 chr1B 83.962 424 55 10 1165 1586 470911459 470911871 1.040000e-105 394.0
9 TraesCS1A01G257800 chr1B 83.898 354 53 4 1617 1968 470911938 470912289 6.420000e-88 335.0
10 TraesCS1A01G257800 chr1D 93.718 2515 98 24 612 3096 349477504 349479988 0.000000e+00 3714.0
11 TraesCS1A01G257800 chr1D 83.097 775 117 12 2130 2894 349255020 349255790 0.000000e+00 693.0
12 TraesCS1A01G257800 chr1D 83.452 423 57 10 1166 1586 349253821 349254232 8.130000e-102 381.0
13 TraesCS1A01G257800 chr1D 85.028 354 49 4 1617 1968 349254302 349254653 1.370000e-94 357.0
14 TraesCS1A01G257800 chr1D 90.654 107 10 0 3901 4007 291541630 291541524 4.170000e-30 143.0
15 TraesCS1A01G257800 chr2A 88.915 848 67 17 3078 3904 588260791 588261632 0.000000e+00 1020.0
16 TraesCS1A01G257800 chr2A 87.500 840 83 15 3080 3904 72930934 72930102 0.000000e+00 950.0
17 TraesCS1A01G257800 chr2A 86.516 838 90 14 3082 3904 131698771 131697942 0.000000e+00 900.0
18 TraesCS1A01G257800 chr2A 84.994 833 75 25 3115 3904 710456749 710455924 0.000000e+00 800.0
19 TraesCS1A01G257800 chr2A 90.090 333 19 6 1 321 640081103 640081433 1.720000e-113 420.0
20 TraesCS1A01G257800 chr2A 89.329 328 31 3 1 326 752019888 752019563 3.730000e-110 409.0
21 TraesCS1A01G257800 chr2A 88.308 325 35 3 1 324 713245461 713245783 1.750000e-103 387.0
22 TraesCS1A01G257800 chr2A 89.720 107 11 0 3901 4007 588262218 588262324 1.940000e-28 137.0
23 TraesCS1A01G257800 chr3D 88.480 842 78 13 3078 3904 509148674 509149511 0.000000e+00 1000.0
24 TraesCS1A01G257800 chr3D 88.402 845 77 9 3080 3904 125023352 125022509 0.000000e+00 998.0
25 TraesCS1A01G257800 chr3D 89.720 107 11 0 3901 4007 125021885 125021779 1.940000e-28 137.0
26 TraesCS1A01G257800 chr3D 89.720 107 11 0 3901 4007 188363732 188363626 1.940000e-28 137.0
27 TraesCS1A01G257800 chr3D 89.720 107 11 0 3901 4007 398410631 398410737 1.940000e-28 137.0
28 TraesCS1A01G257800 chr3A 86.311 862 78 19 3078 3904 657988246 657987390 0.000000e+00 902.0
29 TraesCS1A01G257800 chr3A 89.602 327 32 2 1 326 16668489 16668164 8.010000e-112 414.0
30 TraesCS1A01G257800 chr3A 88.923 325 34 2 1 324 135400922 135400599 2.240000e-107 399.0
31 TraesCS1A01G257800 chr3A 88.785 321 34 2 1 321 614562839 614563157 3.750000e-105 392.0
32 TraesCS1A01G257800 chr3A 88.073 327 37 2 1 326 741364815 741365140 1.750000e-103 387.0
33 TraesCS1A01G257800 chr6A 87.626 792 77 11 3080 3855 432569423 432568637 0.000000e+00 900.0
34 TraesCS1A01G257800 chr6A 89.130 322 31 4 1 321 608108587 608108905 8.070000e-107 398.0
35 TraesCS1A01G257800 chr6A 97.222 36 1 0 1302 1337 493756469 493756504 1.200000e-05 62.1
36 TraesCS1A01G257800 chr6A 97.222 36 1 0 1302 1337 493842649 493842684 1.200000e-05 62.1
37 TraesCS1A01G257800 chr6A 90.698 43 4 0 539 581 101856075 101856033 1.560000e-04 58.4
38 TraesCS1A01G257800 chr5A 85.816 846 95 17 3080 3903 618947827 618946985 0.000000e+00 874.0
39 TraesCS1A01G257800 chr5A 85.816 839 97 14 3080 3901 648614621 648615454 0.000000e+00 870.0
40 TraesCS1A01G257800 chr5A 84.091 88 14 0 496 583 704971857 704971770 7.140000e-13 86.1
41 TraesCS1A01G257800 chr7A 88.110 328 37 2 1 327 6878632 6878306 4.860000e-104 388.0
42 TraesCS1A01G257800 chr7B 78.384 458 52 25 3480 3904 632797140 632796697 1.850000e-63 254.0
43 TraesCS1A01G257800 chr2B 91.339 127 7 3 364 487 703617668 703617543 1.910000e-38 171.0
44 TraesCS1A01G257800 chr2B 92.982 57 4 0 359 415 670844581 670844637 2.570000e-12 84.2
45 TraesCS1A01G257800 chr2D 89.720 107 11 0 3901 4007 458718182 458718288 1.940000e-28 137.0
46 TraesCS1A01G257800 chr2D 89.720 107 11 0 3901 4007 619476679 619476573 1.940000e-28 137.0
47 TraesCS1A01G257800 chr2D 88.393 112 13 0 3896 4007 364979955 364979844 6.990000e-28 135.0
48 TraesCS1A01G257800 chr6D 100.000 36 0 0 1302 1337 348861519 348861554 2.580000e-07 67.6
49 TraesCS1A01G257800 chr6D 100.000 36 0 0 1302 1337 349031582 349031617 2.580000e-07 67.6
50 TraesCS1A01G257800 chr6D 97.222 36 1 0 1302 1337 350204903 350204868 1.200000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G257800 chr1A 449810986 449814992 4006 False 7400.000000 7400 100.000000 1 4007 1 chr1A.!!$F2 4006
1 TraesCS1A01G257800 chr1A 449623824 449625755 1931 False 470.666667 702 83.528333 1166 2894 3 chr1A.!!$F3 1728
2 TraesCS1A01G257800 chr1A 449821586 449822383 797 True 363.000000 363 75.520000 1165 1959 1 chr1A.!!$R1 794
3 TraesCS1A01G257800 chr1B 471024128 471026600 2472 False 3866.000000 3866 94.934000 612 3080 1 chr1B.!!$F1 2468
4 TraesCS1A01G257800 chr1B 470911459 470913432 1973 False 474.000000 693 83.659667 1165 2894 3 chr1B.!!$F2 1729
5 TraesCS1A01G257800 chr1D 349477504 349479988 2484 False 3714.000000 3714 93.718000 612 3096 1 chr1D.!!$F1 2484
6 TraesCS1A01G257800 chr1D 349253821 349255790 1969 False 477.000000 693 83.859000 1166 2894 3 chr1D.!!$F2 1728
7 TraesCS1A01G257800 chr2A 72930102 72930934 832 True 950.000000 950 87.500000 3080 3904 1 chr2A.!!$R1 824
8 TraesCS1A01G257800 chr2A 131697942 131698771 829 True 900.000000 900 86.516000 3082 3904 1 chr2A.!!$R2 822
9 TraesCS1A01G257800 chr2A 710455924 710456749 825 True 800.000000 800 84.994000 3115 3904 1 chr2A.!!$R3 789
10 TraesCS1A01G257800 chr2A 588260791 588262324 1533 False 578.500000 1020 89.317500 3078 4007 2 chr2A.!!$F3 929
11 TraesCS1A01G257800 chr3D 509148674 509149511 837 False 1000.000000 1000 88.480000 3078 3904 1 chr3D.!!$F2 826
12 TraesCS1A01G257800 chr3D 125021779 125023352 1573 True 567.500000 998 89.061000 3080 4007 2 chr3D.!!$R2 927
13 TraesCS1A01G257800 chr3A 657987390 657988246 856 True 902.000000 902 86.311000 3078 3904 1 chr3A.!!$R3 826
14 TraesCS1A01G257800 chr6A 432568637 432569423 786 True 900.000000 900 87.626000 3080 3855 1 chr6A.!!$R2 775
15 TraesCS1A01G257800 chr5A 618946985 618947827 842 True 874.000000 874 85.816000 3080 3903 1 chr5A.!!$R1 823
16 TraesCS1A01G257800 chr5A 648614621 648615454 833 False 870.000000 870 85.816000 3080 3901 1 chr5A.!!$F1 821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.037697 TTCTTAAGAGCGCGGCTGAA 60.038 50.0 8.83 2.08 39.88 3.02 F
318 319 0.175760 TTAAGAGCGCGGCTGAAGAT 59.824 50.0 8.83 0.00 39.88 2.40 F
420 421 0.251787 AAACCAAGCATCACTCCCCC 60.252 55.0 0.00 0.00 0.00 5.40 F
457 458 0.322546 CCCCTGCCACTCCTAAACAC 60.323 60.0 0.00 0.00 0.00 3.32 F
459 460 0.400213 CCTGCCACTCCTAAACACCA 59.600 55.0 0.00 0.00 0.00 4.17 F
510 511 0.842635 ATACGTACTCCCTCCGTCCT 59.157 55.0 0.00 0.00 36.12 3.85 F
681 684 1.131638 AAGACCAACTGACCTGCTGA 58.868 50.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 1159 0.172578 CAGTCAACACGGGCGAGATA 59.827 55.000 0.00 0.00 0.00 1.98 R
2085 2391 0.923403 CGTCGGTCGTCGTCACTATA 59.077 55.000 2.26 0.00 40.32 1.31 R
2362 2668 2.412112 GAAGGCGCGGTCGTAGAT 59.588 61.111 8.83 0.00 40.67 1.98 R
2884 3196 2.572284 GTTCCCCTCCACGTCGAG 59.428 66.667 2.84 2.84 0.00 4.04 R
2934 3246 1.738099 CTCCGCACTCCGACTTTGG 60.738 63.158 0.00 0.00 40.02 3.28 R
2953 3265 1.391157 GCATCGAGCTCAGTCTCCCT 61.391 60.000 15.40 0.00 41.15 4.20 R
3146 3476 1.471287 CTAACATCCGTGTCCGTCTGA 59.529 52.381 0.00 0.00 37.67 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.412605 GCATCAATGGAGGCTGACC 58.587 57.895 0.00 0.00 46.80 4.02
24 25 1.442526 GCATCAATGGAGGCTGACCG 61.443 60.000 0.00 0.00 46.80 4.79
25 26 0.816825 CATCAATGGAGGCTGACCGG 60.817 60.000 0.00 0.00 42.76 5.28
26 27 2.615227 ATCAATGGAGGCTGACCGGC 62.615 60.000 0.00 0.00 42.76 6.13
27 28 4.473520 AATGGAGGCTGACCGGCG 62.474 66.667 0.00 0.00 44.22 6.46
42 43 4.107051 GCGCGACAGCTTTGGCAT 62.107 61.111 12.10 0.00 42.32 4.40
43 44 2.562912 CGCGACAGCTTTGGCATT 59.437 55.556 0.00 0.00 42.32 3.56
44 45 1.798725 CGCGACAGCTTTGGCATTG 60.799 57.895 0.00 0.00 42.32 2.82
45 46 1.580942 GCGACAGCTTTGGCATTGA 59.419 52.632 1.60 0.00 41.70 2.57
46 47 0.171903 GCGACAGCTTTGGCATTGAT 59.828 50.000 1.60 0.00 41.70 2.57
47 48 1.403249 GCGACAGCTTTGGCATTGATT 60.403 47.619 1.60 0.00 41.70 2.57
48 49 2.523015 CGACAGCTTTGGCATTGATTC 58.477 47.619 0.00 0.00 41.70 2.52
49 50 2.095110 CGACAGCTTTGGCATTGATTCA 60.095 45.455 0.00 0.00 41.70 2.57
50 51 3.248266 GACAGCTTTGGCATTGATTCAC 58.752 45.455 0.00 0.00 41.70 3.18
51 52 2.028748 ACAGCTTTGGCATTGATTCACC 60.029 45.455 0.00 0.00 41.70 4.02
52 53 1.203052 AGCTTTGGCATTGATTCACCG 59.797 47.619 0.00 0.00 41.70 4.94
53 54 1.632422 CTTTGGCATTGATTCACCGC 58.368 50.000 0.00 0.00 0.00 5.68
54 55 0.109365 TTTGGCATTGATTCACCGCG 60.109 50.000 0.00 0.00 0.00 6.46
55 56 1.932011 TTGGCATTGATTCACCGCGG 61.932 55.000 26.86 26.86 0.00 6.46
56 57 2.408835 GCATTGATTCACCGCGGG 59.591 61.111 31.76 18.67 0.00 6.13
57 58 2.112198 GCATTGATTCACCGCGGGA 61.112 57.895 31.76 20.83 0.00 5.14
58 59 1.653094 GCATTGATTCACCGCGGGAA 61.653 55.000 31.76 27.61 0.00 3.97
59 60 0.808125 CATTGATTCACCGCGGGAAA 59.192 50.000 31.76 22.80 0.00 3.13
60 61 0.808755 ATTGATTCACCGCGGGAAAC 59.191 50.000 31.76 25.31 0.00 2.78
71 72 4.110493 GGGAAACGAGGCGATGAG 57.890 61.111 0.00 0.00 0.00 2.90
72 73 1.521681 GGGAAACGAGGCGATGAGG 60.522 63.158 0.00 0.00 0.00 3.86
73 74 1.515954 GGAAACGAGGCGATGAGGA 59.484 57.895 0.00 0.00 0.00 3.71
74 75 0.806492 GGAAACGAGGCGATGAGGAC 60.806 60.000 0.00 0.00 0.00 3.85
75 76 1.140407 GAAACGAGGCGATGAGGACG 61.140 60.000 0.00 0.00 0.00 4.79
76 77 1.592400 AAACGAGGCGATGAGGACGA 61.592 55.000 0.00 0.00 0.00 4.20
77 78 2.024871 CGAGGCGATGAGGACGAC 59.975 66.667 0.00 0.00 39.24 4.34
78 79 2.024871 GAGGCGATGAGGACGACG 59.975 66.667 0.00 0.00 44.04 5.12
79 80 2.437895 AGGCGATGAGGACGACGA 60.438 61.111 0.00 0.00 44.04 4.20
80 81 1.989966 GAGGCGATGAGGACGACGAA 61.990 60.000 0.00 0.00 44.04 3.85
81 82 1.586564 GGCGATGAGGACGACGAAG 60.587 63.158 0.00 0.00 0.00 3.79
82 83 1.586564 GCGATGAGGACGACGAAGG 60.587 63.158 0.00 0.00 0.00 3.46
83 84 1.064296 CGATGAGGACGACGAAGGG 59.936 63.158 0.00 0.00 0.00 3.95
84 85 1.437986 GATGAGGACGACGAAGGGG 59.562 63.158 0.00 0.00 0.00 4.79
85 86 2.630592 GATGAGGACGACGAAGGGGC 62.631 65.000 0.00 0.00 0.00 5.80
86 87 4.493747 GAGGACGACGAAGGGGCG 62.494 72.222 0.00 0.00 37.29 6.13
88 89 4.493747 GGACGACGAAGGGGCGAG 62.494 72.222 0.00 0.00 34.83 5.03
89 90 3.437795 GACGACGAAGGGGCGAGA 61.438 66.667 0.00 0.00 34.83 4.04
90 91 2.986306 GACGACGAAGGGGCGAGAA 61.986 63.158 0.00 0.00 34.83 2.87
91 92 2.260434 CGACGAAGGGGCGAGAAA 59.740 61.111 0.00 0.00 34.83 2.52
92 93 1.373748 CGACGAAGGGGCGAGAAAA 60.374 57.895 0.00 0.00 34.83 2.29
93 94 0.947180 CGACGAAGGGGCGAGAAAAA 60.947 55.000 0.00 0.00 34.83 1.94
94 95 0.796927 GACGAAGGGGCGAGAAAAAG 59.203 55.000 0.00 0.00 34.83 2.27
95 96 0.605589 ACGAAGGGGCGAGAAAAAGG 60.606 55.000 0.00 0.00 34.83 3.11
96 97 0.605589 CGAAGGGGCGAGAAAAAGGT 60.606 55.000 0.00 0.00 0.00 3.50
97 98 1.338389 CGAAGGGGCGAGAAAAAGGTA 60.338 52.381 0.00 0.00 0.00 3.08
98 99 2.357075 GAAGGGGCGAGAAAAAGGTAG 58.643 52.381 0.00 0.00 0.00 3.18
99 100 1.652947 AGGGGCGAGAAAAAGGTAGA 58.347 50.000 0.00 0.00 0.00 2.59
100 101 1.555533 AGGGGCGAGAAAAAGGTAGAG 59.444 52.381 0.00 0.00 0.00 2.43
101 102 1.278413 GGGGCGAGAAAAAGGTAGAGT 59.722 52.381 0.00 0.00 0.00 3.24
102 103 2.619147 GGGCGAGAAAAAGGTAGAGTC 58.381 52.381 0.00 0.00 0.00 3.36
103 104 2.260481 GGCGAGAAAAAGGTAGAGTCG 58.740 52.381 0.00 0.00 0.00 4.18
104 105 1.654602 GCGAGAAAAAGGTAGAGTCGC 59.345 52.381 0.00 0.00 43.71 5.19
105 106 2.671632 GCGAGAAAAAGGTAGAGTCGCT 60.672 50.000 6.57 0.00 45.87 4.93
106 107 2.917971 CGAGAAAAAGGTAGAGTCGCTG 59.082 50.000 0.00 0.00 0.00 5.18
107 108 3.254892 GAGAAAAAGGTAGAGTCGCTGG 58.745 50.000 0.00 0.00 0.00 4.85
108 109 1.732809 GAAAAAGGTAGAGTCGCTGGC 59.267 52.381 0.00 0.00 0.00 4.85
109 110 0.389948 AAAAGGTAGAGTCGCTGGCG 60.390 55.000 8.80 8.80 41.35 5.69
110 111 2.837371 AAAGGTAGAGTCGCTGGCGC 62.837 60.000 10.28 0.00 39.59 6.53
139 140 2.642700 GGCTCTTCGCGCCAAAAA 59.357 55.556 0.00 0.00 46.77 1.94
140 141 1.729484 GGCTCTTCGCGCCAAAAAC 60.729 57.895 0.00 0.00 46.77 2.43
141 142 2.074920 GCTCTTCGCGCCAAAAACG 61.075 57.895 0.00 0.00 0.00 3.60
142 143 1.567537 CTCTTCGCGCCAAAAACGA 59.432 52.632 0.00 0.00 0.00 3.85
143 144 0.165944 CTCTTCGCGCCAAAAACGAT 59.834 50.000 0.00 0.00 35.48 3.73
144 145 0.589223 TCTTCGCGCCAAAAACGATT 59.411 45.000 0.00 0.00 35.48 3.34
145 146 0.974836 CTTCGCGCCAAAAACGATTC 59.025 50.000 0.00 0.00 35.48 2.52
146 147 0.723129 TTCGCGCCAAAAACGATTCG 60.723 50.000 0.00 4.14 35.48 3.34
147 148 2.763929 CGCGCCAAAAACGATTCGC 61.764 57.895 5.86 0.00 39.26 4.70
148 149 2.433334 GCGCCAAAAACGATTCGCC 61.433 57.895 5.86 0.00 37.02 5.54
149 150 1.799916 CGCCAAAAACGATTCGCCC 60.800 57.895 5.86 0.00 0.00 6.13
150 151 1.799916 GCCAAAAACGATTCGCCCG 60.800 57.895 5.86 0.00 0.00 6.13
151 152 1.154112 CCAAAAACGATTCGCCCGG 60.154 57.895 5.86 0.00 0.00 5.73
152 153 1.799916 CAAAAACGATTCGCCCGGC 60.800 57.895 5.86 0.00 0.00 6.13
153 154 2.262303 AAAAACGATTCGCCCGGCA 61.262 52.632 10.77 0.00 0.00 5.69
154 155 2.466520 AAAAACGATTCGCCCGGCAC 62.467 55.000 10.77 0.00 0.00 5.01
173 174 4.452733 CCCCGAGCGACCTCCAAC 62.453 72.222 0.00 0.00 34.49 3.77
174 175 4.796231 CCCGAGCGACCTCCAACG 62.796 72.222 0.00 0.00 34.49 4.10
175 176 3.744719 CCGAGCGACCTCCAACGA 61.745 66.667 0.00 0.00 34.49 3.85
176 177 2.202492 CGAGCGACCTCCAACGAG 60.202 66.667 0.00 0.00 34.49 4.18
177 178 2.507324 GAGCGACCTCCAACGAGC 60.507 66.667 0.00 0.00 34.49 5.03
178 179 3.991536 GAGCGACCTCCAACGAGCC 62.992 68.421 0.00 0.00 34.49 4.70
180 181 4.796231 CGACCTCCAACGAGCCGG 62.796 72.222 0.00 0.00 34.49 6.13
181 182 4.452733 GACCTCCAACGAGCCGGG 62.453 72.222 2.18 0.00 34.49 5.73
183 184 4.016706 CCTCCAACGAGCCGGGTT 62.017 66.667 8.00 0.00 34.49 4.11
184 185 2.434359 CTCCAACGAGCCGGGTTC 60.434 66.667 8.00 0.03 0.00 3.62
185 186 4.367023 TCCAACGAGCCGGGTTCG 62.367 66.667 28.25 28.25 41.73 3.95
195 196 4.710167 CGGGTTCGGGTTGGGTCC 62.710 72.222 0.00 0.00 0.00 4.46
209 210 3.428282 GTCCGCCGACGCCAATTT 61.428 61.111 0.00 0.00 38.22 1.82
210 211 3.122323 TCCGCCGACGCCAATTTC 61.122 61.111 0.00 0.00 38.22 2.17
211 212 4.514569 CCGCCGACGCCAATTTCG 62.515 66.667 0.00 0.00 38.22 3.46
219 220 2.180769 GCCAATTTCGGCCCGAAC 59.819 61.111 19.96 2.46 45.64 3.95
220 221 2.882132 CCAATTTCGGCCCGAACC 59.118 61.111 19.96 0.00 45.64 3.62
228 229 3.434454 GGCCCGAACCGACAAAAA 58.566 55.556 0.00 0.00 0.00 1.94
229 230 1.008194 GGCCCGAACCGACAAAAAC 60.008 57.895 0.00 0.00 0.00 2.43
230 231 1.449726 GGCCCGAACCGACAAAAACT 61.450 55.000 0.00 0.00 0.00 2.66
231 232 0.317519 GCCCGAACCGACAAAAACTG 60.318 55.000 0.00 0.00 0.00 3.16
232 233 0.309612 CCCGAACCGACAAAAACTGG 59.690 55.000 0.00 0.00 0.00 4.00
233 234 0.309612 CCGAACCGACAAAAACTGGG 59.690 55.000 0.00 0.00 0.00 4.45
234 235 0.317519 CGAACCGACAAAAACTGGGC 60.318 55.000 0.00 0.00 0.00 5.36
235 236 1.029681 GAACCGACAAAAACTGGGCT 58.970 50.000 0.00 0.00 0.00 5.19
236 237 1.001706 GAACCGACAAAAACTGGGCTC 60.002 52.381 0.00 0.00 0.00 4.70
237 238 0.182775 ACCGACAAAAACTGGGCTCT 59.817 50.000 0.00 0.00 0.00 4.09
238 239 1.318576 CCGACAAAAACTGGGCTCTT 58.681 50.000 0.00 0.00 0.00 2.85
239 240 1.001378 CCGACAAAAACTGGGCTCTTG 60.001 52.381 0.00 0.00 0.00 3.02
240 241 1.946768 CGACAAAAACTGGGCTCTTGA 59.053 47.619 0.00 0.00 0.00 3.02
241 242 2.357637 CGACAAAAACTGGGCTCTTGAA 59.642 45.455 0.00 0.00 0.00 2.69
242 243 3.548818 CGACAAAAACTGGGCTCTTGAAG 60.549 47.826 0.00 0.00 0.00 3.02
243 244 2.695147 ACAAAAACTGGGCTCTTGAAGG 59.305 45.455 0.00 0.00 0.00 3.46
249 250 3.491652 GGCTCTTGAAGGCGCGAC 61.492 66.667 12.10 7.34 41.22 5.19
250 251 2.433318 GCTCTTGAAGGCGCGACT 60.433 61.111 9.84 9.84 0.00 4.18
251 252 2.734673 GCTCTTGAAGGCGCGACTG 61.735 63.158 19.28 1.74 0.00 3.51
252 253 2.048222 TCTTGAAGGCGCGACTGG 60.048 61.111 19.28 6.71 0.00 4.00
253 254 3.121030 CTTGAAGGCGCGACTGGG 61.121 66.667 19.28 1.59 0.00 4.45
261 262 3.124921 CGCGACTGGGCCGATTTT 61.125 61.111 0.00 0.00 0.00 1.82
262 263 2.686816 CGCGACTGGGCCGATTTTT 61.687 57.895 0.00 0.00 0.00 1.94
276 277 3.652000 TTTTTGGCGCCGACGGAC 61.652 61.111 23.90 8.59 40.57 4.79
282 283 3.704609 GCGCCGACGGACGAAAAA 61.705 61.111 27.06 0.00 45.77 1.94
303 304 7.987750 AAAAAGTCTAGAAGGCCTTCTTAAG 57.012 36.000 44.43 35.98 46.95 1.85
304 305 6.936968 AAAGTCTAGAAGGCCTTCTTAAGA 57.063 37.500 44.43 37.32 46.95 2.10
305 306 6.538945 AAGTCTAGAAGGCCTTCTTAAGAG 57.461 41.667 44.43 35.05 46.95 2.85
306 307 4.404394 AGTCTAGAAGGCCTTCTTAAGAGC 59.596 45.833 44.43 31.71 46.95 4.09
307 308 2.682155 AGAAGGCCTTCTTAAGAGCG 57.318 50.000 37.44 1.11 46.95 5.03
308 309 1.010580 GAAGGCCTTCTTAAGAGCGC 58.989 55.000 33.98 14.44 35.50 5.92
309 310 0.741221 AAGGCCTTCTTAAGAGCGCG 60.741 55.000 13.78 0.00 33.14 6.86
310 311 2.174319 GGCCTTCTTAAGAGCGCGG 61.174 63.158 8.83 11.58 0.00 6.46
311 312 2.814238 GCCTTCTTAAGAGCGCGGC 61.814 63.158 8.83 16.28 0.00 6.53
312 313 1.153549 CCTTCTTAAGAGCGCGGCT 60.154 57.895 8.83 5.31 43.88 5.52
313 314 1.424493 CCTTCTTAAGAGCGCGGCTG 61.424 60.000 8.83 0.00 39.88 4.85
314 315 0.458543 CTTCTTAAGAGCGCGGCTGA 60.459 55.000 8.83 0.00 39.88 4.26
315 316 0.037697 TTCTTAAGAGCGCGGCTGAA 60.038 50.000 8.83 2.08 39.88 3.02
316 317 0.458543 TCTTAAGAGCGCGGCTGAAG 60.459 55.000 18.88 18.88 39.88 3.02
317 318 0.458543 CTTAAGAGCGCGGCTGAAGA 60.459 55.000 19.77 0.64 39.88 2.87
318 319 0.175760 TTAAGAGCGCGGCTGAAGAT 59.824 50.000 8.83 0.00 39.88 2.40
319 320 0.528466 TAAGAGCGCGGCTGAAGATG 60.528 55.000 8.83 0.00 39.88 2.90
320 321 3.934684 GAGCGCGGCTGAAGATGC 61.935 66.667 8.83 0.00 39.88 3.91
321 322 4.463879 AGCGCGGCTGAAGATGCT 62.464 61.111 8.83 0.00 37.57 3.79
322 323 3.934684 GCGCGGCTGAAGATGCTC 61.935 66.667 8.83 0.00 0.00 4.26
323 324 2.202851 CGCGGCTGAAGATGCTCT 60.203 61.111 0.00 0.00 0.00 4.09
324 325 1.066422 CGCGGCTGAAGATGCTCTA 59.934 57.895 0.00 0.00 0.00 2.43
325 326 0.528466 CGCGGCTGAAGATGCTCTAA 60.528 55.000 0.00 0.00 0.00 2.10
326 327 1.656652 GCGGCTGAAGATGCTCTAAA 58.343 50.000 0.00 0.00 0.00 1.85
327 328 1.596727 GCGGCTGAAGATGCTCTAAAG 59.403 52.381 0.00 0.00 0.00 1.85
328 329 2.739932 GCGGCTGAAGATGCTCTAAAGA 60.740 50.000 0.00 0.00 0.00 2.52
329 330 3.726607 CGGCTGAAGATGCTCTAAAGAT 58.273 45.455 0.00 0.00 0.00 2.40
330 331 3.740321 CGGCTGAAGATGCTCTAAAGATC 59.260 47.826 0.00 0.00 0.00 2.75
331 332 4.064388 GGCTGAAGATGCTCTAAAGATCC 58.936 47.826 0.00 0.00 0.00 3.36
332 333 4.444022 GGCTGAAGATGCTCTAAAGATCCA 60.444 45.833 0.00 0.00 0.00 3.41
333 334 4.511082 GCTGAAGATGCTCTAAAGATCCAC 59.489 45.833 0.00 0.00 0.00 4.02
334 335 5.684552 GCTGAAGATGCTCTAAAGATCCACT 60.685 44.000 0.00 0.00 0.00 4.00
335 336 5.911752 TGAAGATGCTCTAAAGATCCACTC 58.088 41.667 0.00 0.00 0.00 3.51
336 337 5.660417 TGAAGATGCTCTAAAGATCCACTCT 59.340 40.000 0.00 0.00 34.96 3.24
337 338 5.789643 AGATGCTCTAAAGATCCACTCTC 57.210 43.478 0.00 0.00 31.03 3.20
338 339 4.588528 AGATGCTCTAAAGATCCACTCTCC 59.411 45.833 0.00 0.00 31.03 3.71
339 340 3.713003 TGCTCTAAAGATCCACTCTCCA 58.287 45.455 0.00 0.00 31.03 3.86
340 341 4.293494 TGCTCTAAAGATCCACTCTCCAT 58.707 43.478 0.00 0.00 31.03 3.41
341 342 4.100653 TGCTCTAAAGATCCACTCTCCATG 59.899 45.833 0.00 0.00 31.03 3.66
342 343 4.502950 GCTCTAAAGATCCACTCTCCATGG 60.503 50.000 4.97 4.97 38.71 3.66
348 349 1.511613 TCCACTCTCCATGGATTCCC 58.488 55.000 16.63 0.00 41.47 3.97
349 350 1.010046 TCCACTCTCCATGGATTCCCT 59.990 52.381 16.63 0.00 41.47 4.20
350 351 1.419387 CCACTCTCCATGGATTCCCTC 59.581 57.143 16.63 0.00 39.87 4.30
351 352 2.406559 CACTCTCCATGGATTCCCTCT 58.593 52.381 16.63 0.00 0.00 3.69
352 353 2.104451 CACTCTCCATGGATTCCCTCTG 59.896 54.545 16.63 0.36 0.00 3.35
353 354 2.022625 ACTCTCCATGGATTCCCTCTGA 60.023 50.000 16.63 5.37 0.00 3.27
354 355 2.633967 CTCTCCATGGATTCCCTCTGAG 59.366 54.545 16.63 11.71 0.00 3.35
355 356 2.248423 TCTCCATGGATTCCCTCTGAGA 59.752 50.000 16.63 1.55 31.90 3.27
356 357 2.368221 CTCCATGGATTCCCTCTGAGAC 59.632 54.545 16.63 0.00 0.00 3.36
357 358 1.069823 CCATGGATTCCCTCTGAGACG 59.930 57.143 5.56 0.00 0.00 4.18
358 359 2.034878 CATGGATTCCCTCTGAGACGA 58.965 52.381 6.17 0.00 0.00 4.20
359 360 1.475403 TGGATTCCCTCTGAGACGAC 58.525 55.000 6.17 0.00 0.00 4.34
360 361 1.272480 TGGATTCCCTCTGAGACGACA 60.272 52.381 6.17 0.00 0.00 4.35
361 362 1.135333 GGATTCCCTCTGAGACGACAC 59.865 57.143 6.17 0.00 0.00 3.67
362 363 1.819288 GATTCCCTCTGAGACGACACA 59.181 52.381 6.17 0.00 0.00 3.72
363 364 1.924731 TTCCCTCTGAGACGACACAT 58.075 50.000 6.17 0.00 0.00 3.21
364 365 2.801077 TCCCTCTGAGACGACACATA 57.199 50.000 6.17 0.00 0.00 2.29
365 366 2.366533 TCCCTCTGAGACGACACATAC 58.633 52.381 6.17 0.00 0.00 2.39
366 367 1.064208 CCCTCTGAGACGACACATACG 59.936 57.143 6.17 0.00 0.00 3.06
367 368 2.007608 CCTCTGAGACGACACATACGA 58.992 52.381 6.17 0.00 34.70 3.43
368 369 2.031068 CCTCTGAGACGACACATACGAG 59.969 54.545 6.17 0.00 34.70 4.18
369 370 2.930682 CTCTGAGACGACACATACGAGA 59.069 50.000 0.00 0.00 34.70 4.04
370 371 3.332034 TCTGAGACGACACATACGAGAA 58.668 45.455 0.00 0.00 34.70 2.87
371 372 3.371285 TCTGAGACGACACATACGAGAAG 59.629 47.826 0.00 0.00 34.70 2.85
372 373 2.159558 TGAGACGACACATACGAGAAGC 60.160 50.000 0.00 0.00 34.70 3.86
373 374 1.810755 AGACGACACATACGAGAAGCA 59.189 47.619 0.00 0.00 34.70 3.91
374 375 2.423892 AGACGACACATACGAGAAGCAT 59.576 45.455 0.00 0.00 34.70 3.79
375 376 3.626217 AGACGACACATACGAGAAGCATA 59.374 43.478 0.00 0.00 34.70 3.14
376 377 3.692576 ACGACACATACGAGAAGCATAC 58.307 45.455 0.00 0.00 34.70 2.39
377 378 3.128068 ACGACACATACGAGAAGCATACA 59.872 43.478 0.00 0.00 34.70 2.29
378 379 4.202020 ACGACACATACGAGAAGCATACAT 60.202 41.667 0.00 0.00 34.70 2.29
379 380 5.008316 ACGACACATACGAGAAGCATACATA 59.992 40.000 0.00 0.00 34.70 2.29
380 381 5.912955 CGACACATACGAGAAGCATACATAA 59.087 40.000 0.00 0.00 0.00 1.90
381 382 6.086896 CGACACATACGAGAAGCATACATAAG 59.913 42.308 0.00 0.00 0.00 1.73
382 383 6.806751 ACACATACGAGAAGCATACATAAGT 58.193 36.000 0.00 0.00 0.00 2.24
383 384 7.265673 ACACATACGAGAAGCATACATAAGTT 58.734 34.615 0.00 0.00 0.00 2.66
384 385 7.764443 ACACATACGAGAAGCATACATAAGTTT 59.236 33.333 0.00 0.00 0.00 2.66
385 386 9.244799 CACATACGAGAAGCATACATAAGTTTA 57.755 33.333 0.00 0.00 0.00 2.01
386 387 9.245962 ACATACGAGAAGCATACATAAGTTTAC 57.754 33.333 0.00 0.00 0.00 2.01
387 388 6.807708 ACGAGAAGCATACATAAGTTTACG 57.192 37.500 0.00 0.00 0.00 3.18
388 389 6.558009 ACGAGAAGCATACATAAGTTTACGA 58.442 36.000 0.00 0.00 0.00 3.43
389 390 7.031372 ACGAGAAGCATACATAAGTTTACGAA 58.969 34.615 0.00 0.00 0.00 3.85
390 391 7.543172 ACGAGAAGCATACATAAGTTTACGAAA 59.457 33.333 0.00 0.00 0.00 3.46
391 392 7.839837 CGAGAAGCATACATAAGTTTACGAAAC 59.160 37.037 0.00 0.00 41.69 2.78
392 393 7.971455 AGAAGCATACATAAGTTTACGAAACC 58.029 34.615 0.00 0.00 42.34 3.27
393 394 7.822822 AGAAGCATACATAAGTTTACGAAACCT 59.177 33.333 0.00 0.00 42.34 3.50
394 395 7.916914 AGCATACATAAGTTTACGAAACCTT 57.083 32.000 0.00 0.00 42.34 3.50
395 396 7.971455 AGCATACATAAGTTTACGAAACCTTC 58.029 34.615 0.00 0.00 42.34 3.46
396 397 7.065443 AGCATACATAAGTTTACGAAACCTTCC 59.935 37.037 0.00 0.00 42.34 3.46
397 398 7.148373 GCATACATAAGTTTACGAAACCTTCCA 60.148 37.037 0.00 0.00 42.34 3.53
398 399 8.723311 CATACATAAGTTTACGAAACCTTCCAA 58.277 33.333 0.00 0.00 42.34 3.53
399 400 6.962686 ACATAAGTTTACGAAACCTTCCAAC 58.037 36.000 0.00 0.00 42.34 3.77
400 401 6.769341 ACATAAGTTTACGAAACCTTCCAACT 59.231 34.615 0.00 0.00 42.34 3.16
401 402 7.933033 ACATAAGTTTACGAAACCTTCCAACTA 59.067 33.333 0.00 0.00 42.34 2.24
402 403 8.776470 CATAAGTTTACGAAACCTTCCAACTAA 58.224 33.333 0.00 0.00 42.34 2.24
403 404 7.628769 AAGTTTACGAAACCTTCCAACTAAA 57.371 32.000 0.00 0.00 42.34 1.85
404 405 7.019774 AGTTTACGAAACCTTCCAACTAAAC 57.980 36.000 0.00 0.00 42.34 2.01
405 406 6.038603 AGTTTACGAAACCTTCCAACTAAACC 59.961 38.462 0.00 0.00 42.34 3.27
406 407 3.888583 ACGAAACCTTCCAACTAAACCA 58.111 40.909 0.00 0.00 0.00 3.67
407 408 4.271661 ACGAAACCTTCCAACTAAACCAA 58.728 39.130 0.00 0.00 0.00 3.67
408 409 4.337274 ACGAAACCTTCCAACTAAACCAAG 59.663 41.667 0.00 0.00 0.00 3.61
409 410 4.617959 GAAACCTTCCAACTAAACCAAGC 58.382 43.478 0.00 0.00 0.00 4.01
410 411 3.306472 ACCTTCCAACTAAACCAAGCA 57.694 42.857 0.00 0.00 0.00 3.91
411 412 3.844640 ACCTTCCAACTAAACCAAGCAT 58.155 40.909 0.00 0.00 0.00 3.79
412 413 3.826729 ACCTTCCAACTAAACCAAGCATC 59.173 43.478 0.00 0.00 0.00 3.91
413 414 3.826157 CCTTCCAACTAAACCAAGCATCA 59.174 43.478 0.00 0.00 0.00 3.07
414 415 4.321230 CCTTCCAACTAAACCAAGCATCAC 60.321 45.833 0.00 0.00 0.00 3.06
415 416 4.098914 TCCAACTAAACCAAGCATCACT 57.901 40.909 0.00 0.00 0.00 3.41
416 417 4.072131 TCCAACTAAACCAAGCATCACTC 58.928 43.478 0.00 0.00 0.00 3.51
417 418 3.191371 CCAACTAAACCAAGCATCACTCC 59.809 47.826 0.00 0.00 0.00 3.85
418 419 3.073274 ACTAAACCAAGCATCACTCCC 57.927 47.619 0.00 0.00 0.00 4.30
419 420 2.290960 ACTAAACCAAGCATCACTCCCC 60.291 50.000 0.00 0.00 0.00 4.81
420 421 0.251787 AAACCAAGCATCACTCCCCC 60.252 55.000 0.00 0.00 0.00 5.40
421 422 1.142688 AACCAAGCATCACTCCCCCT 61.143 55.000 0.00 0.00 0.00 4.79
422 423 1.077212 CCAAGCATCACTCCCCCTG 60.077 63.158 0.00 0.00 0.00 4.45
423 424 1.565390 CCAAGCATCACTCCCCCTGA 61.565 60.000 0.00 0.00 0.00 3.86
424 425 0.549950 CAAGCATCACTCCCCCTGAT 59.450 55.000 0.00 0.00 0.00 2.90
425 426 1.064166 CAAGCATCACTCCCCCTGATT 60.064 52.381 0.00 0.00 0.00 2.57
426 427 1.302907 AGCATCACTCCCCCTGATTT 58.697 50.000 0.00 0.00 0.00 2.17
427 428 1.642762 AGCATCACTCCCCCTGATTTT 59.357 47.619 0.00 0.00 0.00 1.82
428 429 2.027385 GCATCACTCCCCCTGATTTTC 58.973 52.381 0.00 0.00 0.00 2.29
429 430 2.621407 GCATCACTCCCCCTGATTTTCA 60.621 50.000 0.00 0.00 0.00 2.69
430 431 2.879103 TCACTCCCCCTGATTTTCAC 57.121 50.000 0.00 0.00 0.00 3.18
431 432 1.003118 TCACTCCCCCTGATTTTCACG 59.997 52.381 0.00 0.00 0.00 4.35
432 433 0.328258 ACTCCCCCTGATTTTCACGG 59.672 55.000 0.00 0.00 0.00 4.94
433 434 0.618458 CTCCCCCTGATTTTCACGGA 59.382 55.000 0.00 0.00 0.00 4.69
434 435 1.212935 CTCCCCCTGATTTTCACGGAT 59.787 52.381 0.00 0.00 0.00 4.18
435 436 1.064758 TCCCCCTGATTTTCACGGATG 60.065 52.381 0.00 0.00 0.00 3.51
436 437 1.392589 CCCCTGATTTTCACGGATGG 58.607 55.000 0.00 0.00 0.00 3.51
437 438 1.392589 CCCTGATTTTCACGGATGGG 58.607 55.000 0.00 0.00 0.00 4.00
438 439 0.740737 CCTGATTTTCACGGATGGGC 59.259 55.000 0.00 0.00 0.00 5.36
439 440 0.740737 CTGATTTTCACGGATGGGCC 59.259 55.000 0.00 0.00 0.00 5.80
440 441 0.682855 TGATTTTCACGGATGGGCCC 60.683 55.000 17.59 17.59 0.00 5.80
441 442 1.381191 ATTTTCACGGATGGGCCCC 60.381 57.895 22.27 3.89 0.00 5.80
442 443 1.874299 ATTTTCACGGATGGGCCCCT 61.874 55.000 22.27 10.21 0.00 4.79
443 444 2.779742 TTTTCACGGATGGGCCCCTG 62.780 60.000 22.27 12.80 0.00 4.45
454 455 3.087065 GCCCCTGCCACTCCTAAA 58.913 61.111 0.00 0.00 0.00 1.85
455 456 1.378646 GCCCCTGCCACTCCTAAAC 60.379 63.158 0.00 0.00 0.00 2.01
456 457 2.074967 CCCCTGCCACTCCTAAACA 58.925 57.895 0.00 0.00 0.00 2.83
457 458 0.322546 CCCCTGCCACTCCTAAACAC 60.323 60.000 0.00 0.00 0.00 3.32
458 459 0.322546 CCCTGCCACTCCTAAACACC 60.323 60.000 0.00 0.00 0.00 4.16
459 460 0.400213 CCTGCCACTCCTAAACACCA 59.600 55.000 0.00 0.00 0.00 4.17
460 461 1.202879 CCTGCCACTCCTAAACACCAA 60.203 52.381 0.00 0.00 0.00 3.67
461 462 2.555227 CCTGCCACTCCTAAACACCAAT 60.555 50.000 0.00 0.00 0.00 3.16
462 463 3.308117 CCTGCCACTCCTAAACACCAATA 60.308 47.826 0.00 0.00 0.00 1.90
463 464 3.681593 TGCCACTCCTAAACACCAATAC 58.318 45.455 0.00 0.00 0.00 1.89
464 465 3.329520 TGCCACTCCTAAACACCAATACT 59.670 43.478 0.00 0.00 0.00 2.12
465 466 3.689649 GCCACTCCTAAACACCAATACTG 59.310 47.826 0.00 0.00 0.00 2.74
466 467 4.564821 GCCACTCCTAAACACCAATACTGA 60.565 45.833 0.00 0.00 0.00 3.41
467 468 5.745227 CCACTCCTAAACACCAATACTGAT 58.255 41.667 0.00 0.00 0.00 2.90
468 469 5.586243 CCACTCCTAAACACCAATACTGATG 59.414 44.000 0.00 0.00 0.00 3.07
469 470 5.065218 CACTCCTAAACACCAATACTGATGC 59.935 44.000 0.00 0.00 0.00 3.91
470 471 5.045578 ACTCCTAAACACCAATACTGATGCT 60.046 40.000 0.00 0.00 0.00 3.79
471 472 5.428253 TCCTAAACACCAATACTGATGCTC 58.572 41.667 0.00 0.00 0.00 4.26
472 473 4.576463 CCTAAACACCAATACTGATGCTCC 59.424 45.833 0.00 0.00 0.00 4.70
473 474 3.719268 AACACCAATACTGATGCTCCA 57.281 42.857 0.00 0.00 0.00 3.86
474 475 2.991250 ACACCAATACTGATGCTCCAC 58.009 47.619 0.00 0.00 0.00 4.02
475 476 1.935873 CACCAATACTGATGCTCCACG 59.064 52.381 0.00 0.00 0.00 4.94
476 477 1.555075 ACCAATACTGATGCTCCACGT 59.445 47.619 0.00 0.00 0.00 4.49
477 478 2.027192 ACCAATACTGATGCTCCACGTT 60.027 45.455 0.00 0.00 0.00 3.99
478 479 2.352651 CCAATACTGATGCTCCACGTTG 59.647 50.000 0.00 0.00 0.00 4.10
479 480 2.315925 ATACTGATGCTCCACGTTGG 57.684 50.000 0.00 0.00 39.43 3.77
480 481 0.973632 TACTGATGCTCCACGTTGGT 59.026 50.000 0.00 0.00 39.03 3.67
481 482 0.973632 ACTGATGCTCCACGTTGGTA 59.026 50.000 0.00 0.00 39.03 3.25
482 483 1.555075 ACTGATGCTCCACGTTGGTAT 59.445 47.619 0.00 0.00 39.03 2.73
483 484 2.027192 ACTGATGCTCCACGTTGGTATT 60.027 45.455 0.00 0.00 39.03 1.89
484 485 3.196901 ACTGATGCTCCACGTTGGTATTA 59.803 43.478 0.00 0.00 39.03 0.98
485 486 3.527533 TGATGCTCCACGTTGGTATTAC 58.472 45.455 0.00 0.00 39.03 1.89
486 487 1.999048 TGCTCCACGTTGGTATTACG 58.001 50.000 0.00 0.00 44.20 3.18
487 488 1.283736 GCTCCACGTTGGTATTACGG 58.716 55.000 0.00 0.00 42.99 4.02
488 489 1.135024 GCTCCACGTTGGTATTACGGA 60.135 52.381 0.00 0.00 42.99 4.69
489 490 2.674747 GCTCCACGTTGGTATTACGGAA 60.675 50.000 0.00 0.00 42.99 4.30
490 491 3.184541 CTCCACGTTGGTATTACGGAAG 58.815 50.000 0.00 0.00 42.99 3.46
491 492 2.824936 TCCACGTTGGTATTACGGAAGA 59.175 45.455 0.00 0.00 42.99 2.87
492 493 3.448301 TCCACGTTGGTATTACGGAAGAT 59.552 43.478 0.00 0.00 42.99 2.40
493 494 4.644234 TCCACGTTGGTATTACGGAAGATA 59.356 41.667 0.00 0.00 42.99 1.98
494 495 4.741676 CCACGTTGGTATTACGGAAGATAC 59.258 45.833 0.00 0.00 42.99 2.24
495 496 4.438797 CACGTTGGTATTACGGAAGATACG 59.561 45.833 5.95 5.95 42.99 3.06
496 497 8.809324 CCACGTTGGTATTACGGAAGATACGT 62.809 46.154 6.98 6.98 42.99 3.57
497 498 5.295787 ACGTTGGTATTACGGAAGATACGTA 59.704 40.000 10.00 0.00 44.93 3.57
498 499 5.621228 CGTTGGTATTACGGAAGATACGTAC 59.379 44.000 0.00 0.00 45.30 3.67
499 500 6.511767 CGTTGGTATTACGGAAGATACGTACT 60.512 42.308 0.00 0.00 45.30 2.73
500 501 6.545504 TGGTATTACGGAAGATACGTACTC 57.454 41.667 0.00 0.00 45.30 2.59
501 502 5.470098 TGGTATTACGGAAGATACGTACTCC 59.530 44.000 0.00 3.75 45.30 3.85
502 503 5.106515 GGTATTACGGAAGATACGTACTCCC 60.107 48.000 0.00 0.00 45.30 4.30
503 504 2.725221 ACGGAAGATACGTACTCCCT 57.275 50.000 0.00 0.00 43.60 4.20
504 505 2.570135 ACGGAAGATACGTACTCCCTC 58.430 52.381 0.00 0.00 43.60 4.30
505 506 1.878734 CGGAAGATACGTACTCCCTCC 59.121 57.143 0.00 5.75 0.00 4.30
506 507 1.878734 GGAAGATACGTACTCCCTCCG 59.121 57.143 0.00 0.00 0.00 4.63
507 508 2.570135 GAAGATACGTACTCCCTCCGT 58.430 52.381 0.00 0.00 38.53 4.69
508 509 2.252976 AGATACGTACTCCCTCCGTC 57.747 55.000 0.00 0.00 36.12 4.79
509 510 1.202746 AGATACGTACTCCCTCCGTCC 60.203 57.143 0.00 0.00 36.12 4.79
510 511 0.842635 ATACGTACTCCCTCCGTCCT 59.157 55.000 0.00 0.00 36.12 3.85
511 512 1.496060 TACGTACTCCCTCCGTCCTA 58.504 55.000 0.00 0.00 36.12 2.94
512 513 0.842635 ACGTACTCCCTCCGTCCTAT 59.157 55.000 0.00 0.00 0.00 2.57
513 514 1.213926 ACGTACTCCCTCCGTCCTATT 59.786 52.381 0.00 0.00 0.00 1.73
514 515 2.439507 ACGTACTCCCTCCGTCCTATTA 59.560 50.000 0.00 0.00 0.00 0.98
515 516 3.073650 ACGTACTCCCTCCGTCCTATTAT 59.926 47.826 0.00 0.00 0.00 1.28
516 517 3.439476 CGTACTCCCTCCGTCCTATTATG 59.561 52.174 0.00 0.00 0.00 1.90
517 518 3.614568 ACTCCCTCCGTCCTATTATGT 57.385 47.619 0.00 0.00 0.00 2.29
518 519 4.736611 ACTCCCTCCGTCCTATTATGTA 57.263 45.455 0.00 0.00 0.00 2.29
519 520 5.070823 ACTCCCTCCGTCCTATTATGTAA 57.929 43.478 0.00 0.00 0.00 2.41
520 521 5.078256 ACTCCCTCCGTCCTATTATGTAAG 58.922 45.833 0.00 0.00 0.00 2.34
521 522 5.163012 ACTCCCTCCGTCCTATTATGTAAGA 60.163 44.000 0.00 0.00 0.00 2.10
522 523 5.900437 TCCCTCCGTCCTATTATGTAAGAT 58.100 41.667 0.00 0.00 0.00 2.40
523 524 5.715279 TCCCTCCGTCCTATTATGTAAGATG 59.285 44.000 0.00 0.00 0.00 2.90
524 525 5.480772 CCCTCCGTCCTATTATGTAAGATGT 59.519 44.000 0.00 0.00 0.00 3.06
525 526 6.014499 CCCTCCGTCCTATTATGTAAGATGTT 60.014 42.308 0.00 0.00 0.00 2.71
526 527 7.442656 CCTCCGTCCTATTATGTAAGATGTTT 58.557 38.462 0.00 0.00 0.00 2.83
527 528 7.931948 CCTCCGTCCTATTATGTAAGATGTTTT 59.068 37.037 0.00 0.00 0.00 2.43
528 529 9.326413 CTCCGTCCTATTATGTAAGATGTTTTT 57.674 33.333 0.00 0.00 0.00 1.94
575 576 9.902196 AAAACGTTTTACATTATAGGACAAAGG 57.098 29.630 24.13 0.00 0.00 3.11
576 577 7.619964 ACGTTTTACATTATAGGACAAAGGG 57.380 36.000 0.00 0.00 0.00 3.95
577 578 7.396418 ACGTTTTACATTATAGGACAAAGGGA 58.604 34.615 0.00 0.00 0.00 4.20
578 579 7.551617 ACGTTTTACATTATAGGACAAAGGGAG 59.448 37.037 0.00 0.00 0.00 4.30
579 580 7.551617 CGTTTTACATTATAGGACAAAGGGAGT 59.448 37.037 0.00 0.00 0.00 3.85
580 581 9.895138 GTTTTACATTATAGGACAAAGGGAGTA 57.105 33.333 0.00 0.00 0.00 2.59
582 583 6.176014 ACATTATAGGACAAAGGGAGTAGC 57.824 41.667 0.00 0.00 0.00 3.58
583 584 5.905913 ACATTATAGGACAAAGGGAGTAGCT 59.094 40.000 0.00 0.00 0.00 3.32
584 585 7.073854 ACATTATAGGACAAAGGGAGTAGCTA 58.926 38.462 0.00 0.00 0.00 3.32
585 586 7.735321 ACATTATAGGACAAAGGGAGTAGCTAT 59.265 37.037 0.00 0.00 0.00 2.97
586 587 8.598041 CATTATAGGACAAAGGGAGTAGCTATT 58.402 37.037 0.00 0.00 0.00 1.73
587 588 8.562949 TTATAGGACAAAGGGAGTAGCTATTT 57.437 34.615 0.00 0.00 0.00 1.40
588 589 5.780958 AGGACAAAGGGAGTAGCTATTTT 57.219 39.130 0.00 0.00 0.00 1.82
589 590 6.140968 AGGACAAAGGGAGTAGCTATTTTT 57.859 37.500 0.00 0.00 0.00 1.94
610 611 4.519540 TTTTTGAAGTCTAGCATTGCCC 57.480 40.909 4.70 0.00 0.00 5.36
637 640 7.062322 TCATAATGGAGTTGCCTGTCATATTT 58.938 34.615 0.00 0.00 37.63 1.40
648 651 5.527214 TGCCTGTCATATTTAATCAACCGAG 59.473 40.000 0.00 0.00 0.00 4.63
649 652 5.049405 GCCTGTCATATTTAATCAACCGAGG 60.049 44.000 0.00 0.00 0.00 4.63
681 684 1.131638 AAGACCAACTGACCTGCTGA 58.868 50.000 0.00 0.00 0.00 4.26
694 697 1.506493 CTGCTGACTGCGAGTCTTTT 58.494 50.000 14.60 0.00 45.27 2.27
695 698 2.610479 CCTGCTGACTGCGAGTCTTTTA 60.610 50.000 14.60 0.00 45.27 1.52
696 699 2.665537 CTGCTGACTGCGAGTCTTTTAG 59.334 50.000 14.60 7.17 45.27 1.85
722 725 3.444703 AACAGCTGTGATCTACGATCC 57.555 47.619 22.49 0.00 0.00 3.36
747 750 4.985538 TGGCAGATTTAACCTCTGAACTT 58.014 39.130 15.29 0.00 42.22 2.66
796 799 2.354821 ACAGTTCGCTTGTTTTGTCTCC 59.645 45.455 0.00 0.00 0.00 3.71
872 878 7.937942 AGTTCACTCACTACCGATATACTATGT 59.062 37.037 0.00 0.00 0.00 2.29
909 915 6.334202 AGCTCACTGAGTAGCTTTTATGTAC 58.666 40.000 7.89 0.00 46.82 2.90
927 933 1.756950 CGCTAGCCCTCCCACACTA 60.757 63.158 9.66 0.00 0.00 2.74
955 961 3.258372 TCACTAGTCACATCAAGTCCACC 59.742 47.826 0.00 0.00 0.00 4.61
957 963 3.646162 ACTAGTCACATCAAGTCCACCAA 59.354 43.478 0.00 0.00 0.00 3.67
958 964 3.795688 AGTCACATCAAGTCCACCAAT 57.204 42.857 0.00 0.00 0.00 3.16
959 965 4.908601 AGTCACATCAAGTCCACCAATA 57.091 40.909 0.00 0.00 0.00 1.90
960 966 4.579869 AGTCACATCAAGTCCACCAATAC 58.420 43.478 0.00 0.00 0.00 1.89
979 985 3.589495 ACGCAGTAAGAAAGGGACTAC 57.411 47.619 0.00 0.00 41.94 2.73
980 986 2.895404 ACGCAGTAAGAAAGGGACTACA 59.105 45.455 0.00 0.00 41.94 2.74
981 987 3.056749 ACGCAGTAAGAAAGGGACTACAG 60.057 47.826 0.00 0.00 41.94 2.74
982 988 3.192844 CGCAGTAAGAAAGGGACTACAGA 59.807 47.826 0.00 0.00 38.49 3.41
983 989 4.675671 CGCAGTAAGAAAGGGACTACAGAG 60.676 50.000 0.00 0.00 38.49 3.35
984 990 4.463186 GCAGTAAGAAAGGGACTACAGAGA 59.537 45.833 0.00 0.00 38.49 3.10
985 991 5.393678 GCAGTAAGAAAGGGACTACAGAGAG 60.394 48.000 0.00 0.00 38.49 3.20
1088 1100 2.880890 CAATGCCCTTCATACTAGGTGC 59.119 50.000 0.00 0.00 34.33 5.01
1145 1168 1.405821 AGCGCAGTATATATCTCGCCC 59.594 52.381 11.47 0.00 43.05 6.13
1233 1256 3.584834 CAACATGATCACGTACCTCACA 58.415 45.455 0.00 0.00 0.00 3.58
1533 1556 3.485431 CTGCTCTTCACCGCGCTG 61.485 66.667 5.56 0.00 0.00 5.18
1693 1776 1.372499 CTGACGGTGGTGGTGTACG 60.372 63.158 0.00 0.00 0.00 3.67
2085 2391 1.153549 GTTCTTGGATCGAGCGGCT 60.154 57.895 0.00 0.00 0.00 5.52
2362 2668 1.683707 ATGCTCGTCAGCCTCTCCA 60.684 57.895 0.00 0.00 46.26 3.86
2568 2874 2.667318 CGTGCCGATCAGCGTGTTT 61.667 57.895 0.00 0.00 38.67 2.83
2884 3196 3.509967 CCATTTTTACACCCTGAAGTCCC 59.490 47.826 0.00 0.00 0.00 4.46
2934 3246 2.109126 GCAAGATGACGGTGAGGGC 61.109 63.158 0.00 0.00 0.00 5.19
2953 3265 1.289066 CAAAGTCGGAGTGCGGAGA 59.711 57.895 3.57 0.00 0.00 3.71
2996 3308 1.466360 CCGCATTGGAGCTTCGAAAAG 60.466 52.381 0.00 0.00 42.00 2.27
3002 3314 2.912771 TGGAGCTTCGAAAAGTTGTGA 58.087 42.857 0.00 0.00 34.79 3.58
3068 3398 9.146984 CATTGTATCTTTGAACTACCGAACTTA 57.853 33.333 0.00 0.00 0.00 2.24
3075 3405 9.362539 TCTTTGAACTACCGAACTTATATTGAC 57.637 33.333 0.00 0.00 0.00 3.18
3120 3450 3.816523 GACCCAAACAGACGGTGATTTTA 59.183 43.478 0.00 0.00 0.00 1.52
3138 3468 7.324135 GTGATTTTATCCGCTTTTTGTTCGTTA 59.676 33.333 0.00 0.00 0.00 3.18
3146 3476 3.242837 GCTTTTTGTTCGTTAGGTTCGGT 60.243 43.478 0.00 0.00 0.00 4.69
3165 3495 1.200716 GTCAGACGGACACGGATGTTA 59.799 52.381 0.42 0.00 46.19 2.41
3178 3508 5.410439 ACACGGATGTTAGCTTTCGTATTTT 59.590 36.000 0.00 0.00 34.46 1.82
3180 3510 5.640357 ACGGATGTTAGCTTTCGTATTTTGA 59.360 36.000 0.00 0.00 0.00 2.69
3295 3639 1.823169 TAAAGCCGGCCACGAAGACT 61.823 55.000 26.15 0.00 44.60 3.24
3324 3668 1.725625 CACGCGTCCACATTTGCAC 60.726 57.895 9.86 0.00 0.00 4.57
3468 3821 1.134694 CAGAGCGTCGTCATGTCGA 59.865 57.895 11.02 11.02 37.51 4.20
3531 3906 3.710722 CCTGGCGCACCTTCTCCT 61.711 66.667 10.83 0.00 36.63 3.69
3703 4081 4.849329 GCGCACTACTCCCGTCCG 62.849 72.222 0.30 0.00 0.00 4.79
3792 4183 2.985282 CACCATGCTGTTGCCCGT 60.985 61.111 0.00 0.00 38.71 5.28
3855 4258 2.756283 CTCCTCTTCCGCCTCCGT 60.756 66.667 0.00 0.00 0.00 4.69
3922 4974 1.839747 AGTGGGTAGTTGGACGGCA 60.840 57.895 0.00 0.00 0.00 5.69
3928 4980 0.177141 GTAGTTGGACGGCAGCCATA 59.823 55.000 13.30 0.00 34.90 2.74
3942 4994 2.347114 CATATGGGGATGCGGCGA 59.653 61.111 12.98 0.00 0.00 5.54
3994 5046 1.348538 CGTCGGCGCAGACACATTTA 61.349 55.000 33.98 0.00 40.98 1.40
4000 5052 1.019278 CGCAGACACATTTAGGGCGT 61.019 55.000 0.00 0.00 38.36 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.106819 AGCCTCCATTGATGCCTCAC 60.107 55.000 0.00 0.00 33.08 3.51
1 2 0.106868 CAGCCTCCATTGATGCCTCA 60.107 55.000 0.00 0.00 33.08 3.86
2 3 0.182061 TCAGCCTCCATTGATGCCTC 59.818 55.000 0.00 0.00 33.08 4.70
3 4 0.106819 GTCAGCCTCCATTGATGCCT 60.107 55.000 0.00 0.00 33.08 4.75
4 5 1.105759 GGTCAGCCTCCATTGATGCC 61.106 60.000 0.00 0.00 33.08 4.40
5 6 1.442526 CGGTCAGCCTCCATTGATGC 61.443 60.000 0.00 0.00 32.84 3.91
6 7 0.816825 CCGGTCAGCCTCCATTGATG 60.817 60.000 0.00 0.00 0.00 3.07
7 8 1.528824 CCGGTCAGCCTCCATTGAT 59.471 57.895 0.00 0.00 0.00 2.57
8 9 2.989639 CCGGTCAGCCTCCATTGA 59.010 61.111 0.00 0.00 0.00 2.57
9 10 2.825836 GCCGGTCAGCCTCCATTG 60.826 66.667 1.90 0.00 0.00 2.82
10 11 4.473520 CGCCGGTCAGCCTCCATT 62.474 66.667 1.90 0.00 0.00 3.16
25 26 3.615536 AATGCCAAAGCTGTCGCGC 62.616 57.895 0.00 0.00 42.32 6.86
26 27 1.798725 CAATGCCAAAGCTGTCGCG 60.799 57.895 0.00 0.00 42.32 5.87
27 28 0.171903 ATCAATGCCAAAGCTGTCGC 59.828 50.000 0.00 0.00 40.80 5.19
28 29 2.095110 TGAATCAATGCCAAAGCTGTCG 60.095 45.455 0.00 0.00 40.80 4.35
29 30 3.248266 GTGAATCAATGCCAAAGCTGTC 58.752 45.455 0.00 0.00 40.80 3.51
30 31 2.028748 GGTGAATCAATGCCAAAGCTGT 60.029 45.455 0.00 0.00 40.80 4.40
31 32 2.613691 GGTGAATCAATGCCAAAGCTG 58.386 47.619 0.00 0.00 40.80 4.24
32 33 1.203052 CGGTGAATCAATGCCAAAGCT 59.797 47.619 0.00 0.00 40.80 3.74
33 34 1.632422 CGGTGAATCAATGCCAAAGC 58.368 50.000 0.00 0.00 40.48 3.51
34 35 1.632422 GCGGTGAATCAATGCCAAAG 58.368 50.000 0.00 0.00 0.00 2.77
35 36 0.109365 CGCGGTGAATCAATGCCAAA 60.109 50.000 0.00 0.00 0.00 3.28
36 37 1.505807 CGCGGTGAATCAATGCCAA 59.494 52.632 0.00 0.00 0.00 4.52
37 38 2.405805 CCGCGGTGAATCAATGCCA 61.406 57.895 19.50 0.00 0.00 4.92
38 39 2.408835 CCGCGGTGAATCAATGCC 59.591 61.111 19.50 0.00 0.00 4.40
39 40 1.653094 TTCCCGCGGTGAATCAATGC 61.653 55.000 26.12 0.00 0.00 3.56
40 41 0.808125 TTTCCCGCGGTGAATCAATG 59.192 50.000 26.12 5.01 0.00 2.82
41 42 0.808755 GTTTCCCGCGGTGAATCAAT 59.191 50.000 26.12 0.00 0.00 2.57
42 43 1.570347 CGTTTCCCGCGGTGAATCAA 61.570 55.000 26.12 9.49 0.00 2.57
43 44 2.030401 CGTTTCCCGCGGTGAATCA 61.030 57.895 26.12 10.19 0.00 2.57
44 45 1.693083 CTCGTTTCCCGCGGTGAATC 61.693 60.000 26.12 21.75 36.19 2.52
45 46 1.740296 CTCGTTTCCCGCGGTGAAT 60.740 57.895 26.12 0.00 36.19 2.57
46 47 2.356553 CTCGTTTCCCGCGGTGAA 60.357 61.111 26.12 22.90 36.19 3.18
47 48 4.367023 CCTCGTTTCCCGCGGTGA 62.367 66.667 26.12 18.17 36.67 4.02
52 53 3.564027 CATCGCCTCGTTTCCCGC 61.564 66.667 0.00 0.00 36.19 6.13
53 54 1.878522 CTCATCGCCTCGTTTCCCG 60.879 63.158 0.00 0.00 38.13 5.14
54 55 1.521681 CCTCATCGCCTCGTTTCCC 60.522 63.158 0.00 0.00 0.00 3.97
55 56 0.806492 GTCCTCATCGCCTCGTTTCC 60.806 60.000 0.00 0.00 0.00 3.13
56 57 1.140407 CGTCCTCATCGCCTCGTTTC 61.140 60.000 0.00 0.00 0.00 2.78
57 58 1.153823 CGTCCTCATCGCCTCGTTT 60.154 57.895 0.00 0.00 0.00 3.60
58 59 2.044555 TCGTCCTCATCGCCTCGTT 61.045 57.895 0.00 0.00 0.00 3.85
59 60 2.437895 TCGTCCTCATCGCCTCGT 60.438 61.111 0.00 0.00 0.00 4.18
60 61 2.024871 GTCGTCCTCATCGCCTCG 59.975 66.667 0.00 0.00 0.00 4.63
61 62 1.989966 TTCGTCGTCCTCATCGCCTC 61.990 60.000 0.00 0.00 0.00 4.70
62 63 1.994507 CTTCGTCGTCCTCATCGCCT 61.995 60.000 0.00 0.00 0.00 5.52
63 64 1.586564 CTTCGTCGTCCTCATCGCC 60.587 63.158 0.00 0.00 0.00 5.54
64 65 1.586564 CCTTCGTCGTCCTCATCGC 60.587 63.158 0.00 0.00 0.00 4.58
65 66 1.064296 CCCTTCGTCGTCCTCATCG 59.936 63.158 0.00 0.00 0.00 3.84
66 67 1.437986 CCCCTTCGTCGTCCTCATC 59.562 63.158 0.00 0.00 0.00 2.92
67 68 2.722201 GCCCCTTCGTCGTCCTCAT 61.722 63.158 0.00 0.00 0.00 2.90
68 69 3.379445 GCCCCTTCGTCGTCCTCA 61.379 66.667 0.00 0.00 0.00 3.86
69 70 4.493747 CGCCCCTTCGTCGTCCTC 62.494 72.222 0.00 0.00 0.00 3.71
71 72 4.493747 CTCGCCCCTTCGTCGTCC 62.494 72.222 0.00 0.00 0.00 4.79
72 73 2.482296 TTTCTCGCCCCTTCGTCGTC 62.482 60.000 0.00 0.00 0.00 4.20
73 74 2.091102 TTTTCTCGCCCCTTCGTCGT 62.091 55.000 0.00 0.00 0.00 4.34
74 75 0.947180 TTTTTCTCGCCCCTTCGTCG 60.947 55.000 0.00 0.00 0.00 5.12
75 76 0.796927 CTTTTTCTCGCCCCTTCGTC 59.203 55.000 0.00 0.00 0.00 4.20
76 77 0.605589 CCTTTTTCTCGCCCCTTCGT 60.606 55.000 0.00 0.00 0.00 3.85
77 78 0.605589 ACCTTTTTCTCGCCCCTTCG 60.606 55.000 0.00 0.00 0.00 3.79
78 79 2.027469 TCTACCTTTTTCTCGCCCCTTC 60.027 50.000 0.00 0.00 0.00 3.46
79 80 1.982958 TCTACCTTTTTCTCGCCCCTT 59.017 47.619 0.00 0.00 0.00 3.95
80 81 1.555533 CTCTACCTTTTTCTCGCCCCT 59.444 52.381 0.00 0.00 0.00 4.79
81 82 1.278413 ACTCTACCTTTTTCTCGCCCC 59.722 52.381 0.00 0.00 0.00 5.80
82 83 2.619147 GACTCTACCTTTTTCTCGCCC 58.381 52.381 0.00 0.00 0.00 6.13
83 84 2.260481 CGACTCTACCTTTTTCTCGCC 58.740 52.381 0.00 0.00 0.00 5.54
84 85 1.654602 GCGACTCTACCTTTTTCTCGC 59.345 52.381 0.00 0.00 38.36 5.03
85 86 2.917971 CAGCGACTCTACCTTTTTCTCG 59.082 50.000 0.00 0.00 0.00 4.04
86 87 3.254892 CCAGCGACTCTACCTTTTTCTC 58.745 50.000 0.00 0.00 0.00 2.87
87 88 2.613223 GCCAGCGACTCTACCTTTTTCT 60.613 50.000 0.00 0.00 0.00 2.52
88 89 1.732809 GCCAGCGACTCTACCTTTTTC 59.267 52.381 0.00 0.00 0.00 2.29
89 90 1.809684 GCCAGCGACTCTACCTTTTT 58.190 50.000 0.00 0.00 0.00 1.94
90 91 0.389948 CGCCAGCGACTCTACCTTTT 60.390 55.000 6.06 0.00 42.83 2.27
91 92 1.215647 CGCCAGCGACTCTACCTTT 59.784 57.895 6.06 0.00 42.83 3.11
92 93 2.885861 CGCCAGCGACTCTACCTT 59.114 61.111 6.06 0.00 42.83 3.50
93 94 3.827898 GCGCCAGCGACTCTACCT 61.828 66.667 17.53 0.00 42.83 3.08
124 125 0.165944 ATCGTTTTTGGCGCGAAGAG 59.834 50.000 12.10 0.00 38.17 2.85
125 126 0.589223 AATCGTTTTTGGCGCGAAGA 59.411 45.000 12.10 0.00 38.17 2.87
126 127 0.974836 GAATCGTTTTTGGCGCGAAG 59.025 50.000 12.10 0.00 38.17 3.79
127 128 0.723129 CGAATCGTTTTTGGCGCGAA 60.723 50.000 12.10 0.00 38.17 4.70
128 129 1.154562 CGAATCGTTTTTGGCGCGA 60.155 52.632 12.10 0.00 39.02 5.87
129 130 2.763929 GCGAATCGTTTTTGGCGCG 61.764 57.895 0.00 0.00 35.02 6.86
130 131 2.433334 GGCGAATCGTTTTTGGCGC 61.433 57.895 4.07 0.00 43.27 6.53
131 132 1.799916 GGGCGAATCGTTTTTGGCG 60.800 57.895 4.07 0.00 31.83 5.69
132 133 1.799916 CGGGCGAATCGTTTTTGGC 60.800 57.895 4.07 6.24 0.00 4.52
133 134 1.154112 CCGGGCGAATCGTTTTTGG 60.154 57.895 4.07 0.00 0.00 3.28
134 135 1.799916 GCCGGGCGAATCGTTTTTG 60.800 57.895 1.81 0.00 0.00 2.44
135 136 2.262303 TGCCGGGCGAATCGTTTTT 61.262 52.632 15.40 0.00 0.00 1.94
136 137 2.670251 TGCCGGGCGAATCGTTTT 60.670 55.556 15.40 0.00 0.00 2.43
137 138 3.428282 GTGCCGGGCGAATCGTTT 61.428 61.111 15.40 0.00 0.00 3.60
156 157 4.452733 GTTGGAGGTCGCTCGGGG 62.453 72.222 0.00 0.00 0.00 5.73
157 158 4.796231 CGTTGGAGGTCGCTCGGG 62.796 72.222 0.00 0.00 0.00 5.14
158 159 3.685214 CTCGTTGGAGGTCGCTCGG 62.685 68.421 0.00 0.00 36.61 4.63
159 160 2.202492 CTCGTTGGAGGTCGCTCG 60.202 66.667 0.00 0.00 36.61 5.03
160 161 2.507324 GCTCGTTGGAGGTCGCTC 60.507 66.667 0.00 0.00 40.80 5.03
161 162 4.070552 GGCTCGTTGGAGGTCGCT 62.071 66.667 0.00 0.00 40.80 4.93
163 164 4.796231 CCGGCTCGTTGGAGGTCG 62.796 72.222 0.00 0.00 40.80 4.79
164 165 4.452733 CCCGGCTCGTTGGAGGTC 62.453 72.222 0.00 0.00 40.80 3.85
166 167 3.952628 GAACCCGGCTCGTTGGAGG 62.953 68.421 0.00 0.00 40.80 4.30
167 168 2.434359 GAACCCGGCTCGTTGGAG 60.434 66.667 0.00 0.00 43.46 3.86
168 169 4.367023 CGAACCCGGCTCGTTGGA 62.367 66.667 14.22 0.00 0.00 3.53
178 179 4.710167 GGACCCAACCCGAACCCG 62.710 72.222 0.00 0.00 0.00 5.28
192 193 3.376914 GAAATTGGCGTCGGCGGAC 62.377 63.158 13.05 14.05 41.24 4.79
193 194 3.122323 GAAATTGGCGTCGGCGGA 61.122 61.111 13.05 5.72 41.24 5.54
194 195 4.514569 CGAAATTGGCGTCGGCGG 62.515 66.667 13.05 0.00 41.24 6.13
211 212 1.008194 GTTTTTGTCGGTTCGGGCC 60.008 57.895 0.00 0.00 0.00 5.80
212 213 0.317519 CAGTTTTTGTCGGTTCGGGC 60.318 55.000 0.00 0.00 0.00 6.13
213 214 0.309612 CCAGTTTTTGTCGGTTCGGG 59.690 55.000 0.00 0.00 0.00 5.14
214 215 0.309612 CCCAGTTTTTGTCGGTTCGG 59.690 55.000 0.00 0.00 0.00 4.30
215 216 0.317519 GCCCAGTTTTTGTCGGTTCG 60.318 55.000 0.00 0.00 0.00 3.95
216 217 1.001706 GAGCCCAGTTTTTGTCGGTTC 60.002 52.381 0.00 0.00 0.00 3.62
217 218 1.029681 GAGCCCAGTTTTTGTCGGTT 58.970 50.000 0.00 0.00 0.00 4.44
218 219 0.182775 AGAGCCCAGTTTTTGTCGGT 59.817 50.000 0.00 0.00 0.00 4.69
219 220 1.001378 CAAGAGCCCAGTTTTTGTCGG 60.001 52.381 0.00 0.00 0.00 4.79
220 221 1.946768 TCAAGAGCCCAGTTTTTGTCG 59.053 47.619 0.00 0.00 0.00 4.35
221 222 3.243535 CCTTCAAGAGCCCAGTTTTTGTC 60.244 47.826 0.00 0.00 0.00 3.18
222 223 2.695147 CCTTCAAGAGCCCAGTTTTTGT 59.305 45.455 0.00 0.00 0.00 2.83
223 224 2.546584 GCCTTCAAGAGCCCAGTTTTTG 60.547 50.000 0.00 0.00 0.00 2.44
224 225 1.688735 GCCTTCAAGAGCCCAGTTTTT 59.311 47.619 0.00 0.00 0.00 1.94
225 226 1.332195 GCCTTCAAGAGCCCAGTTTT 58.668 50.000 0.00 0.00 0.00 2.43
226 227 0.890996 CGCCTTCAAGAGCCCAGTTT 60.891 55.000 0.00 0.00 0.00 2.66
227 228 1.302832 CGCCTTCAAGAGCCCAGTT 60.303 57.895 0.00 0.00 0.00 3.16
228 229 2.348998 CGCCTTCAAGAGCCCAGT 59.651 61.111 0.00 0.00 0.00 4.00
229 230 3.130160 GCGCCTTCAAGAGCCCAG 61.130 66.667 0.00 0.00 0.00 4.45
231 232 4.760047 TCGCGCCTTCAAGAGCCC 62.760 66.667 0.00 0.00 0.00 5.19
232 233 3.491652 GTCGCGCCTTCAAGAGCC 61.492 66.667 0.00 0.00 0.00 4.70
233 234 2.433318 AGTCGCGCCTTCAAGAGC 60.433 61.111 0.00 0.00 0.00 4.09
234 235 2.097038 CCAGTCGCGCCTTCAAGAG 61.097 63.158 0.00 0.00 0.00 2.85
235 236 2.048222 CCAGTCGCGCCTTCAAGA 60.048 61.111 0.00 0.00 0.00 3.02
236 237 3.121030 CCCAGTCGCGCCTTCAAG 61.121 66.667 0.00 0.00 0.00 3.02
244 245 2.686816 AAAAATCGGCCCAGTCGCG 61.687 57.895 0.00 0.00 0.00 5.87
245 246 3.274067 AAAAATCGGCCCAGTCGC 58.726 55.556 0.00 0.00 0.00 5.19
259 260 3.652000 GTCCGTCGGCGCCAAAAA 61.652 61.111 28.98 5.35 36.67 1.94
265 266 3.704609 TTTTTCGTCCGTCGGCGC 61.705 61.111 19.07 0.00 40.32 6.53
289 290 1.010580 GCGCTCTTAAGAAGGCCTTC 58.989 55.000 34.25 34.25 39.78 3.46
290 291 0.741221 CGCGCTCTTAAGAAGGCCTT 60.741 55.000 20.65 20.65 38.87 4.35
291 292 1.153549 CGCGCTCTTAAGAAGGCCT 60.154 57.895 17.21 0.00 0.00 5.19
292 293 2.174319 CCGCGCTCTTAAGAAGGCC 61.174 63.158 17.21 0.00 0.00 5.19
293 294 2.814238 GCCGCGCTCTTAAGAAGGC 61.814 63.158 18.72 18.72 36.08 4.35
294 295 1.153549 AGCCGCGCTCTTAAGAAGG 60.154 57.895 5.56 8.74 30.62 3.46
295 296 0.458543 TCAGCCGCGCTCTTAAGAAG 60.459 55.000 5.56 5.04 36.40 2.85
296 297 0.037697 TTCAGCCGCGCTCTTAAGAA 60.038 50.000 5.56 0.00 36.40 2.52
297 298 0.458543 CTTCAGCCGCGCTCTTAAGA 60.459 55.000 5.56 4.81 36.40 2.10
298 299 0.458543 TCTTCAGCCGCGCTCTTAAG 60.459 55.000 5.56 9.68 36.40 1.85
299 300 0.175760 ATCTTCAGCCGCGCTCTTAA 59.824 50.000 5.56 0.00 36.40 1.85
300 301 0.528466 CATCTTCAGCCGCGCTCTTA 60.528 55.000 5.56 0.00 36.40 2.10
301 302 1.812922 CATCTTCAGCCGCGCTCTT 60.813 57.895 5.56 0.00 36.40 2.85
302 303 2.202851 CATCTTCAGCCGCGCTCT 60.203 61.111 5.56 0.00 36.40 4.09
303 304 3.934684 GCATCTTCAGCCGCGCTC 61.935 66.667 5.56 0.00 36.40 5.03
304 305 4.463879 AGCATCTTCAGCCGCGCT 62.464 61.111 5.56 0.00 40.77 5.92
305 306 3.934684 GAGCATCTTCAGCCGCGC 61.935 66.667 0.00 0.00 0.00 6.86
310 311 9.512653 AGAGTGGATCTTTAGAGCATCTTCAGC 62.513 44.444 0.00 0.00 37.18 4.26
311 312 6.183360 AGAGTGGATCTTTAGAGCATCTTCAG 60.183 42.308 0.00 0.00 37.18 3.02
312 313 5.660417 AGAGTGGATCTTTAGAGCATCTTCA 59.340 40.000 0.00 0.00 37.18 3.02
313 314 6.160576 AGAGTGGATCTTTAGAGCATCTTC 57.839 41.667 0.00 0.00 37.18 2.87
314 315 5.070313 GGAGAGTGGATCTTTAGAGCATCTT 59.930 44.000 0.00 0.00 40.31 2.40
315 316 4.588528 GGAGAGTGGATCTTTAGAGCATCT 59.411 45.833 0.00 0.00 44.38 2.90
316 317 4.343526 TGGAGAGTGGATCTTTAGAGCATC 59.656 45.833 0.00 0.00 38.84 3.91
317 318 4.293494 TGGAGAGTGGATCTTTAGAGCAT 58.707 43.478 0.00 0.00 38.84 3.79
318 319 3.713003 TGGAGAGTGGATCTTTAGAGCA 58.287 45.455 0.00 0.00 38.84 4.26
319 320 4.502950 CCATGGAGAGTGGATCTTTAGAGC 60.503 50.000 5.56 0.00 38.84 4.09
320 321 4.898265 TCCATGGAGAGTGGATCTTTAGAG 59.102 45.833 11.44 0.00 40.72 2.43
321 322 4.883759 TCCATGGAGAGTGGATCTTTAGA 58.116 43.478 11.44 0.00 40.72 2.10
330 331 1.419387 GAGGGAATCCATGGAGAGTGG 59.581 57.143 21.33 0.00 38.11 4.00
331 332 2.104451 CAGAGGGAATCCATGGAGAGTG 59.896 54.545 21.33 6.61 34.83 3.51
332 333 2.022625 TCAGAGGGAATCCATGGAGAGT 60.023 50.000 21.33 7.87 34.83 3.24
333 334 2.633967 CTCAGAGGGAATCCATGGAGAG 59.366 54.545 21.33 14.00 34.83 3.20
334 335 2.248423 TCTCAGAGGGAATCCATGGAGA 59.752 50.000 21.33 9.86 34.44 3.71
335 336 2.368221 GTCTCAGAGGGAATCCATGGAG 59.632 54.545 21.33 3.70 34.83 3.86
336 337 2.402564 GTCTCAGAGGGAATCCATGGA 58.597 52.381 18.88 18.88 34.83 3.41
337 338 1.069823 CGTCTCAGAGGGAATCCATGG 59.930 57.143 4.97 4.97 34.83 3.66
338 339 2.034878 TCGTCTCAGAGGGAATCCATG 58.965 52.381 0.09 0.00 34.83 3.66
339 340 2.035632 GTCGTCTCAGAGGGAATCCAT 58.964 52.381 0.09 0.00 34.83 3.41
340 341 1.272480 TGTCGTCTCAGAGGGAATCCA 60.272 52.381 0.09 0.00 34.83 3.41
341 342 1.135333 GTGTCGTCTCAGAGGGAATCC 59.865 57.143 0.00 0.00 0.00 3.01
342 343 1.819288 TGTGTCGTCTCAGAGGGAATC 59.181 52.381 0.00 0.00 0.00 2.52
343 344 1.924731 TGTGTCGTCTCAGAGGGAAT 58.075 50.000 0.00 0.00 0.00 3.01
344 345 1.924731 ATGTGTCGTCTCAGAGGGAA 58.075 50.000 0.00 0.00 0.00 3.97
345 346 2.366533 GTATGTGTCGTCTCAGAGGGA 58.633 52.381 0.00 0.00 0.00 4.20
346 347 1.064208 CGTATGTGTCGTCTCAGAGGG 59.936 57.143 0.00 0.00 0.00 4.30
347 348 2.007608 TCGTATGTGTCGTCTCAGAGG 58.992 52.381 0.00 0.00 0.00 3.69
348 349 2.930682 TCTCGTATGTGTCGTCTCAGAG 59.069 50.000 0.00 0.00 0.00 3.35
349 350 2.968675 TCTCGTATGTGTCGTCTCAGA 58.031 47.619 0.00 0.00 0.00 3.27
350 351 3.675481 CTTCTCGTATGTGTCGTCTCAG 58.325 50.000 0.00 0.00 0.00 3.35
351 352 2.159558 GCTTCTCGTATGTGTCGTCTCA 60.160 50.000 0.00 0.00 0.00 3.27
352 353 2.159558 TGCTTCTCGTATGTGTCGTCTC 60.160 50.000 0.00 0.00 0.00 3.36
353 354 1.810755 TGCTTCTCGTATGTGTCGTCT 59.189 47.619 0.00 0.00 0.00 4.18
354 355 2.257974 TGCTTCTCGTATGTGTCGTC 57.742 50.000 0.00 0.00 0.00 4.20
355 356 2.941453 ATGCTTCTCGTATGTGTCGT 57.059 45.000 0.00 0.00 0.00 4.34
356 357 3.691498 TGTATGCTTCTCGTATGTGTCG 58.309 45.455 0.00 0.00 0.00 4.35
357 358 6.918569 ACTTATGTATGCTTCTCGTATGTGTC 59.081 38.462 0.00 0.00 0.00 3.67
358 359 6.806751 ACTTATGTATGCTTCTCGTATGTGT 58.193 36.000 0.00 0.00 0.00 3.72
359 360 7.700322 AACTTATGTATGCTTCTCGTATGTG 57.300 36.000 0.00 0.00 0.00 3.21
360 361 9.245962 GTAAACTTATGTATGCTTCTCGTATGT 57.754 33.333 0.00 0.00 0.00 2.29
361 362 8.417928 CGTAAACTTATGTATGCTTCTCGTATG 58.582 37.037 0.00 0.00 0.00 2.39
362 363 8.347771 TCGTAAACTTATGTATGCTTCTCGTAT 58.652 33.333 0.00 0.00 0.00 3.06
363 364 7.696755 TCGTAAACTTATGTATGCTTCTCGTA 58.303 34.615 0.00 0.00 0.00 3.43
364 365 6.558009 TCGTAAACTTATGTATGCTTCTCGT 58.442 36.000 0.00 0.00 0.00 4.18
365 366 7.445900 TTCGTAAACTTATGTATGCTTCTCG 57.554 36.000 0.00 0.00 0.00 4.04
366 367 8.114905 GGTTTCGTAAACTTATGTATGCTTCTC 58.885 37.037 9.34 0.00 41.14 2.87
367 368 7.822822 AGGTTTCGTAAACTTATGTATGCTTCT 59.177 33.333 9.34 0.00 41.14 2.85
368 369 7.971455 AGGTTTCGTAAACTTATGTATGCTTC 58.029 34.615 9.34 0.00 41.14 3.86
369 370 7.916914 AGGTTTCGTAAACTTATGTATGCTT 57.083 32.000 9.34 0.00 41.14 3.91
370 371 7.065443 GGAAGGTTTCGTAAACTTATGTATGCT 59.935 37.037 4.95 0.00 41.32 3.79
371 372 7.148373 TGGAAGGTTTCGTAAACTTATGTATGC 60.148 37.037 4.95 0.00 41.32 3.14
372 373 8.259049 TGGAAGGTTTCGTAAACTTATGTATG 57.741 34.615 4.95 0.00 41.32 2.39
373 374 8.724229 GTTGGAAGGTTTCGTAAACTTATGTAT 58.276 33.333 4.95 0.00 41.32 2.29
374 375 7.933033 AGTTGGAAGGTTTCGTAAACTTATGTA 59.067 33.333 4.95 0.00 41.32 2.29
375 376 6.769341 AGTTGGAAGGTTTCGTAAACTTATGT 59.231 34.615 4.95 0.00 41.32 2.29
376 377 7.198306 AGTTGGAAGGTTTCGTAAACTTATG 57.802 36.000 4.95 0.00 41.32 1.90
377 378 8.907222 TTAGTTGGAAGGTTTCGTAAACTTAT 57.093 30.769 4.95 0.00 41.32 1.73
378 379 8.611757 GTTTAGTTGGAAGGTTTCGTAAACTTA 58.388 33.333 4.95 0.00 41.32 2.24
379 380 7.415541 GGTTTAGTTGGAAGGTTTCGTAAACTT 60.416 37.037 4.60 4.60 43.89 2.66
380 381 6.038603 GGTTTAGTTGGAAGGTTTCGTAAACT 59.961 38.462 9.34 0.00 41.14 2.66
381 382 6.183360 TGGTTTAGTTGGAAGGTTTCGTAAAC 60.183 38.462 0.00 0.00 40.65 2.01
382 383 5.884792 TGGTTTAGTTGGAAGGTTTCGTAAA 59.115 36.000 0.00 0.00 0.00 2.01
383 384 5.435291 TGGTTTAGTTGGAAGGTTTCGTAA 58.565 37.500 0.00 0.00 0.00 3.18
384 385 5.033589 TGGTTTAGTTGGAAGGTTTCGTA 57.966 39.130 0.00 0.00 0.00 3.43
385 386 3.888583 TGGTTTAGTTGGAAGGTTTCGT 58.111 40.909 0.00 0.00 0.00 3.85
386 387 4.791734 GCTTGGTTTAGTTGGAAGGTTTCG 60.792 45.833 0.00 0.00 0.00 3.46
387 388 4.098807 TGCTTGGTTTAGTTGGAAGGTTTC 59.901 41.667 0.00 0.00 0.00 2.78
388 389 4.027437 TGCTTGGTTTAGTTGGAAGGTTT 58.973 39.130 0.00 0.00 0.00 3.27
389 390 3.637769 TGCTTGGTTTAGTTGGAAGGTT 58.362 40.909 0.00 0.00 0.00 3.50
390 391 3.306472 TGCTTGGTTTAGTTGGAAGGT 57.694 42.857 0.00 0.00 0.00 3.50
391 392 3.826157 TGATGCTTGGTTTAGTTGGAAGG 59.174 43.478 0.00 0.00 0.00 3.46
392 393 4.520492 AGTGATGCTTGGTTTAGTTGGAAG 59.480 41.667 0.00 0.00 0.00 3.46
393 394 4.469657 AGTGATGCTTGGTTTAGTTGGAA 58.530 39.130 0.00 0.00 0.00 3.53
394 395 4.072131 GAGTGATGCTTGGTTTAGTTGGA 58.928 43.478 0.00 0.00 0.00 3.53
395 396 3.191371 GGAGTGATGCTTGGTTTAGTTGG 59.809 47.826 0.00 0.00 0.00 3.77
396 397 3.191371 GGGAGTGATGCTTGGTTTAGTTG 59.809 47.826 0.00 0.00 0.00 3.16
397 398 3.421844 GGGAGTGATGCTTGGTTTAGTT 58.578 45.455 0.00 0.00 0.00 2.24
398 399 2.290960 GGGGAGTGATGCTTGGTTTAGT 60.291 50.000 0.00 0.00 0.00 2.24
399 400 2.369394 GGGGAGTGATGCTTGGTTTAG 58.631 52.381 0.00 0.00 0.00 1.85
400 401 1.005450 GGGGGAGTGATGCTTGGTTTA 59.995 52.381 0.00 0.00 0.00 2.01
401 402 0.251787 GGGGGAGTGATGCTTGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
402 403 1.142688 AGGGGGAGTGATGCTTGGTT 61.143 55.000 0.00 0.00 0.00 3.67
403 404 1.542375 AGGGGGAGTGATGCTTGGT 60.542 57.895 0.00 0.00 0.00 3.67
404 405 1.077212 CAGGGGGAGTGATGCTTGG 60.077 63.158 0.00 0.00 0.00 3.61
405 406 0.549950 ATCAGGGGGAGTGATGCTTG 59.450 55.000 0.00 0.00 33.24 4.01
406 407 1.302907 AATCAGGGGGAGTGATGCTT 58.697 50.000 0.00 0.00 34.78 3.91
407 408 1.302907 AAATCAGGGGGAGTGATGCT 58.697 50.000 0.00 0.00 34.78 3.79
408 409 2.027385 GAAAATCAGGGGGAGTGATGC 58.973 52.381 0.00 0.00 34.78 3.91
409 410 3.019564 GTGAAAATCAGGGGGAGTGATG 58.980 50.000 0.00 0.00 34.78 3.07
410 411 2.356125 CGTGAAAATCAGGGGGAGTGAT 60.356 50.000 0.00 0.00 36.14 3.06
411 412 1.003118 CGTGAAAATCAGGGGGAGTGA 59.997 52.381 0.00 0.00 0.00 3.41
412 413 1.453155 CGTGAAAATCAGGGGGAGTG 58.547 55.000 0.00 0.00 0.00 3.51
413 414 0.328258 CCGTGAAAATCAGGGGGAGT 59.672 55.000 10.48 0.00 45.83 3.85
414 415 3.175133 CCGTGAAAATCAGGGGGAG 57.825 57.895 10.48 0.00 45.83 4.30
419 420 0.740737 GCCCATCCGTGAAAATCAGG 59.259 55.000 0.00 0.00 32.49 3.86
420 421 0.740737 GGCCCATCCGTGAAAATCAG 59.259 55.000 0.00 0.00 0.00 2.90
421 422 0.682855 GGGCCCATCCGTGAAAATCA 60.683 55.000 19.95 0.00 34.94 2.57
422 423 1.391933 GGGGCCCATCCGTGAAAATC 61.392 60.000 26.86 0.00 34.94 2.17
423 424 1.381191 GGGGCCCATCCGTGAAAAT 60.381 57.895 26.86 0.00 34.94 1.82
424 425 2.036572 GGGGCCCATCCGTGAAAA 59.963 61.111 26.86 0.00 34.94 2.29
425 426 2.938798 AGGGGCCCATCCGTGAAA 60.939 61.111 27.72 0.00 34.94 2.69
426 427 3.727258 CAGGGGCCCATCCGTGAA 61.727 66.667 27.72 0.00 43.25 3.18
437 438 1.378646 GTTTAGGAGTGGCAGGGGC 60.379 63.158 0.00 0.00 40.13 5.80
438 439 0.322546 GTGTTTAGGAGTGGCAGGGG 60.323 60.000 0.00 0.00 0.00 4.79
439 440 0.322546 GGTGTTTAGGAGTGGCAGGG 60.323 60.000 0.00 0.00 0.00 4.45
440 441 0.400213 TGGTGTTTAGGAGTGGCAGG 59.600 55.000 0.00 0.00 0.00 4.85
441 442 2.270352 TTGGTGTTTAGGAGTGGCAG 57.730 50.000 0.00 0.00 0.00 4.85
442 443 2.969821 ATTGGTGTTTAGGAGTGGCA 57.030 45.000 0.00 0.00 0.00 4.92
443 444 3.689649 CAGTATTGGTGTTTAGGAGTGGC 59.310 47.826 0.00 0.00 0.00 5.01
444 445 5.160607 TCAGTATTGGTGTTTAGGAGTGG 57.839 43.478 0.00 0.00 0.00 4.00
445 446 5.065218 GCATCAGTATTGGTGTTTAGGAGTG 59.935 44.000 0.04 0.00 37.75 3.51
446 447 5.045578 AGCATCAGTATTGGTGTTTAGGAGT 60.046 40.000 0.04 0.00 37.75 3.85
447 448 5.431765 AGCATCAGTATTGGTGTTTAGGAG 58.568 41.667 0.04 0.00 37.75 3.69
448 449 5.428253 GAGCATCAGTATTGGTGTTTAGGA 58.572 41.667 0.04 0.00 37.75 2.94
449 450 4.576463 GGAGCATCAGTATTGGTGTTTAGG 59.424 45.833 0.04 0.00 37.75 2.69
450 451 5.065218 GTGGAGCATCAGTATTGGTGTTTAG 59.935 44.000 0.04 0.00 37.75 1.85
451 452 4.941263 GTGGAGCATCAGTATTGGTGTTTA 59.059 41.667 0.04 0.00 37.75 2.01
452 453 3.758554 GTGGAGCATCAGTATTGGTGTTT 59.241 43.478 0.04 0.00 37.75 2.83
453 454 3.347216 GTGGAGCATCAGTATTGGTGTT 58.653 45.455 0.04 0.00 37.75 3.32
454 455 2.677902 CGTGGAGCATCAGTATTGGTGT 60.678 50.000 0.04 0.00 37.75 4.16
455 456 1.935873 CGTGGAGCATCAGTATTGGTG 59.064 52.381 0.00 0.00 38.51 4.17
456 457 1.555075 ACGTGGAGCATCAGTATTGGT 59.445 47.619 0.00 0.00 36.25 3.67
457 458 2.315925 ACGTGGAGCATCAGTATTGG 57.684 50.000 0.00 0.00 36.25 3.16
458 459 2.352651 CCAACGTGGAGCATCAGTATTG 59.647 50.000 0.00 0.00 40.96 1.90
459 460 2.027192 ACCAACGTGGAGCATCAGTATT 60.027 45.455 10.46 0.00 40.96 1.89
460 461 1.555075 ACCAACGTGGAGCATCAGTAT 59.445 47.619 10.46 0.00 40.96 2.12
461 462 0.973632 ACCAACGTGGAGCATCAGTA 59.026 50.000 10.46 0.00 40.96 2.74
462 463 0.973632 TACCAACGTGGAGCATCAGT 59.026 50.000 10.46 0.00 40.96 3.41
463 464 2.315925 ATACCAACGTGGAGCATCAG 57.684 50.000 10.46 0.00 40.96 2.90
464 465 2.779755 AATACCAACGTGGAGCATCA 57.220 45.000 10.46 0.00 40.96 3.07
465 466 2.538449 CGTAATACCAACGTGGAGCATC 59.462 50.000 10.46 0.00 40.96 3.91
466 467 2.546778 CGTAATACCAACGTGGAGCAT 58.453 47.619 10.46 0.00 40.96 3.79
467 468 1.404449 CCGTAATACCAACGTGGAGCA 60.404 52.381 10.46 0.00 40.96 4.26
468 469 1.135024 TCCGTAATACCAACGTGGAGC 60.135 52.381 10.46 0.00 40.96 4.70
469 470 2.945447 TCCGTAATACCAACGTGGAG 57.055 50.000 10.46 0.00 40.96 3.86
470 471 2.824936 TCTTCCGTAATACCAACGTGGA 59.175 45.455 10.46 0.00 40.96 4.02
471 472 3.235157 TCTTCCGTAATACCAACGTGG 57.765 47.619 0.00 0.00 45.02 4.94
472 473 4.438797 CGTATCTTCCGTAATACCAACGTG 59.561 45.833 0.00 0.00 38.67 4.49
473 474 4.096382 ACGTATCTTCCGTAATACCAACGT 59.904 41.667 0.00 0.00 38.67 3.99
474 475 4.601019 ACGTATCTTCCGTAATACCAACG 58.399 43.478 0.00 0.00 36.65 4.10
475 476 6.729187 AGTACGTATCTTCCGTAATACCAAC 58.271 40.000 0.00 0.00 41.88 3.77
476 477 6.017109 GGAGTACGTATCTTCCGTAATACCAA 60.017 42.308 0.00 0.00 41.88 3.67
477 478 5.470098 GGAGTACGTATCTTCCGTAATACCA 59.530 44.000 0.00 0.00 41.88 3.25
478 479 5.932661 GGAGTACGTATCTTCCGTAATACC 58.067 45.833 0.00 0.00 41.88 2.73
479 480 5.703130 AGGGAGTACGTATCTTCCGTAATAC 59.297 44.000 13.72 0.00 41.88 1.89
480 481 5.869579 AGGGAGTACGTATCTTCCGTAATA 58.130 41.667 13.72 0.00 41.88 0.98
481 482 4.723309 AGGGAGTACGTATCTTCCGTAAT 58.277 43.478 13.72 0.00 41.88 1.89
482 483 4.130118 GAGGGAGTACGTATCTTCCGTAA 58.870 47.826 14.73 0.00 41.88 3.18
483 484 3.495100 GGAGGGAGTACGTATCTTCCGTA 60.495 52.174 14.73 0.00 39.60 4.02
484 485 2.570135 GAGGGAGTACGTATCTTCCGT 58.430 52.381 14.69 14.69 42.06 4.69
485 486 1.878734 GGAGGGAGTACGTATCTTCCG 59.121 57.143 13.55 0.00 35.81 4.30
486 487 1.878734 CGGAGGGAGTACGTATCTTCC 59.121 57.143 12.22 12.22 0.00 3.46
487 488 2.547634 GACGGAGGGAGTACGTATCTTC 59.452 54.545 0.00 0.00 41.40 2.87
488 489 2.570135 GACGGAGGGAGTACGTATCTT 58.430 52.381 0.00 0.00 41.40 2.40
489 490 1.202746 GGACGGAGGGAGTACGTATCT 60.203 57.143 0.00 0.00 41.40 1.98
490 491 1.202746 AGGACGGAGGGAGTACGTATC 60.203 57.143 0.00 0.00 41.40 2.24
491 492 0.842635 AGGACGGAGGGAGTACGTAT 59.157 55.000 0.00 0.00 41.40 3.06
492 493 1.496060 TAGGACGGAGGGAGTACGTA 58.504 55.000 0.00 0.00 41.40 3.57
493 494 0.842635 ATAGGACGGAGGGAGTACGT 59.157 55.000 0.00 0.00 44.35 3.57
494 495 1.978454 AATAGGACGGAGGGAGTACG 58.022 55.000 0.00 0.00 0.00 3.67
495 496 4.405548 ACATAATAGGACGGAGGGAGTAC 58.594 47.826 0.00 0.00 0.00 2.73
496 497 4.736611 ACATAATAGGACGGAGGGAGTA 57.263 45.455 0.00 0.00 0.00 2.59
497 498 3.614568 ACATAATAGGACGGAGGGAGT 57.385 47.619 0.00 0.00 0.00 3.85
498 499 5.322754 TCTTACATAATAGGACGGAGGGAG 58.677 45.833 0.00 0.00 0.00 4.30
499 500 5.329191 TCTTACATAATAGGACGGAGGGA 57.671 43.478 0.00 0.00 0.00 4.20
500 501 5.480772 ACATCTTACATAATAGGACGGAGGG 59.519 44.000 0.00 0.00 0.00 4.30
501 502 6.591750 ACATCTTACATAATAGGACGGAGG 57.408 41.667 0.00 0.00 0.00 4.30
502 503 8.888579 AAAACATCTTACATAATAGGACGGAG 57.111 34.615 0.00 0.00 0.00 4.63
549 550 9.902196 CCTTTGTCCTATAATGTAAAACGTTTT 57.098 29.630 27.65 27.65 0.00 2.43
550 551 8.517056 CCCTTTGTCCTATAATGTAAAACGTTT 58.483 33.333 7.96 7.96 0.00 3.60
551 552 7.884354 TCCCTTTGTCCTATAATGTAAAACGTT 59.116 33.333 0.00 0.00 0.00 3.99
552 553 7.396418 TCCCTTTGTCCTATAATGTAAAACGT 58.604 34.615 0.00 0.00 0.00 3.99
553 554 7.551617 ACTCCCTTTGTCCTATAATGTAAAACG 59.448 37.037 0.00 0.00 0.00 3.60
554 555 8.803397 ACTCCCTTTGTCCTATAATGTAAAAC 57.197 34.615 0.00 0.00 0.00 2.43
556 557 8.208903 GCTACTCCCTTTGTCCTATAATGTAAA 58.791 37.037 0.00 0.00 0.00 2.01
557 558 7.567622 AGCTACTCCCTTTGTCCTATAATGTAA 59.432 37.037 0.00 0.00 0.00 2.41
558 559 7.073854 AGCTACTCCCTTTGTCCTATAATGTA 58.926 38.462 0.00 0.00 0.00 2.29
559 560 5.905913 AGCTACTCCCTTTGTCCTATAATGT 59.094 40.000 0.00 0.00 0.00 2.71
560 561 6.426646 AGCTACTCCCTTTGTCCTATAATG 57.573 41.667 0.00 0.00 0.00 1.90
561 562 8.743636 AATAGCTACTCCCTTTGTCCTATAAT 57.256 34.615 0.00 0.00 0.00 1.28
562 563 8.562949 AAATAGCTACTCCCTTTGTCCTATAA 57.437 34.615 0.00 0.00 0.00 0.98
563 564 8.562949 AAAATAGCTACTCCCTTTGTCCTATA 57.437 34.615 0.00 0.00 0.00 1.31
564 565 7.453141 AAAATAGCTACTCCCTTTGTCCTAT 57.547 36.000 0.00 0.00 0.00 2.57
565 566 6.886178 AAAATAGCTACTCCCTTTGTCCTA 57.114 37.500 0.00 0.00 0.00 2.94
566 567 5.780958 AAAATAGCTACTCCCTTTGTCCT 57.219 39.130 0.00 0.00 0.00 3.85
589 590 3.258123 GGGGCAATGCTAGACTTCAAAAA 59.742 43.478 4.82 0.00 0.00 1.94
590 591 2.825532 GGGGCAATGCTAGACTTCAAAA 59.174 45.455 4.82 0.00 0.00 2.44
591 592 2.041620 AGGGGCAATGCTAGACTTCAAA 59.958 45.455 4.82 0.00 0.00 2.69
592 593 1.635487 AGGGGCAATGCTAGACTTCAA 59.365 47.619 4.82 0.00 0.00 2.69
593 594 1.210478 GAGGGGCAATGCTAGACTTCA 59.790 52.381 4.82 0.00 0.00 3.02
594 595 1.210478 TGAGGGGCAATGCTAGACTTC 59.790 52.381 4.82 0.50 0.00 3.01
595 596 1.289160 TGAGGGGCAATGCTAGACTT 58.711 50.000 4.82 0.00 0.00 3.01
596 597 1.516110 ATGAGGGGCAATGCTAGACT 58.484 50.000 4.82 0.00 0.00 3.24
597 598 3.492102 TTATGAGGGGCAATGCTAGAC 57.508 47.619 4.82 0.00 0.00 2.59
598 599 3.245016 CCATTATGAGGGGCAATGCTAGA 60.245 47.826 4.82 0.00 0.00 2.43
599 600 3.087031 CCATTATGAGGGGCAATGCTAG 58.913 50.000 4.82 0.00 0.00 3.42
600 601 2.715880 TCCATTATGAGGGGCAATGCTA 59.284 45.455 4.82 0.00 0.00 3.49
601 602 1.500303 TCCATTATGAGGGGCAATGCT 59.500 47.619 4.82 0.00 0.00 3.79
602 603 1.891150 CTCCATTATGAGGGGCAATGC 59.109 52.381 0.00 0.00 0.00 3.56
603 604 3.234234 ACTCCATTATGAGGGGCAATG 57.766 47.619 0.00 0.00 36.66 2.82
604 605 3.569491 CAACTCCATTATGAGGGGCAAT 58.431 45.455 0.00 0.00 36.66 3.56
605 606 2.949963 GCAACTCCATTATGAGGGGCAA 60.950 50.000 0.00 0.00 36.29 4.52
606 607 1.410083 GCAACTCCATTATGAGGGGCA 60.410 52.381 0.00 0.00 36.29 5.36
607 608 1.322442 GCAACTCCATTATGAGGGGC 58.678 55.000 0.00 0.00 36.66 5.80
608 609 1.986882 GGCAACTCCATTATGAGGGG 58.013 55.000 0.00 0.00 36.66 4.79
637 640 2.907696 TCCAAGTTCCCTCGGTTGATTA 59.092 45.455 0.00 0.00 0.00 1.75
648 651 3.154827 TGGTCTTTGATCCAAGTTCCC 57.845 47.619 6.45 6.20 0.00 3.97
649 652 4.022849 CAGTTGGTCTTTGATCCAAGTTCC 60.023 45.833 6.45 10.23 42.52 3.62
661 664 1.490490 TCAGCAGGTCAGTTGGTCTTT 59.510 47.619 0.00 0.00 0.00 2.52
681 684 7.148623 GCTGTTTAATACTAAAAGACTCGCAGT 60.149 37.037 0.00 0.00 0.00 4.40
694 697 8.217131 TCGTAGATCACAGCTGTTTAATACTA 57.783 34.615 18.94 11.83 0.00 1.82
695 698 7.096884 TCGTAGATCACAGCTGTTTAATACT 57.903 36.000 18.94 12.78 0.00 2.12
696 699 7.115095 GGATCGTAGATCACAGCTGTTTAATAC 59.885 40.741 18.94 16.13 45.12 1.89
722 725 3.334691 TCAGAGGTTAAATCTGCCAACG 58.665 45.455 12.17 0.00 43.20 4.10
872 878 1.694150 AGTGAGCTACTGGCAAGTTGA 59.306 47.619 7.16 0.00 44.79 3.18
909 915 1.756950 TAGTGTGGGAGGGCTAGCG 60.757 63.158 9.00 0.00 0.00 4.26
927 933 4.039730 ACTTGATGTGACTAGTGAAGCAGT 59.960 41.667 0.00 0.00 0.00 4.40
955 961 4.504858 AGTCCCTTTCTTACTGCGTATTG 58.495 43.478 0.00 0.00 0.00 1.90
957 963 4.708421 TGTAGTCCCTTTCTTACTGCGTAT 59.292 41.667 0.00 0.00 0.00 3.06
958 964 4.081406 TGTAGTCCCTTTCTTACTGCGTA 58.919 43.478 0.00 0.00 0.00 4.42
959 965 2.895404 TGTAGTCCCTTTCTTACTGCGT 59.105 45.455 0.00 0.00 0.00 5.24
960 966 3.192844 TCTGTAGTCCCTTTCTTACTGCG 59.807 47.826 0.00 0.00 0.00 5.18
979 985 3.667497 TGTTGGAGTTACAGCTCTCTG 57.333 47.619 0.69 0.00 45.71 3.35
980 986 4.564406 CCATTGTTGGAGTTACAGCTCTCT 60.564 45.833 0.69 0.00 46.92 3.10
981 987 3.686726 CCATTGTTGGAGTTACAGCTCTC 59.313 47.826 0.00 0.00 46.92 3.20
982 988 3.679389 CCATTGTTGGAGTTACAGCTCT 58.321 45.455 0.00 0.00 46.92 4.09
983 989 2.162408 GCCATTGTTGGAGTTACAGCTC 59.838 50.000 0.00 0.00 46.92 4.09
984 990 2.162681 GCCATTGTTGGAGTTACAGCT 58.837 47.619 0.00 0.00 46.92 4.24
985 991 1.135689 CGCCATTGTTGGAGTTACAGC 60.136 52.381 0.00 0.00 46.92 4.40
989 995 2.364632 CATCCGCCATTGTTGGAGTTA 58.635 47.619 0.00 0.00 46.92 2.24
1088 1100 0.527565 CAAAGCACGGGGGAATCAAG 59.472 55.000 0.00 0.00 0.00 3.02
1132 1155 4.077108 AGTCAACACGGGCGAGATATATA 58.923 43.478 0.00 0.00 0.00 0.86
1136 1159 0.172578 CAGTCAACACGGGCGAGATA 59.827 55.000 0.00 0.00 0.00 1.98
1137 1160 1.079819 CAGTCAACACGGGCGAGAT 60.080 57.895 0.00 0.00 0.00 2.75
1138 1161 2.338620 CAGTCAACACGGGCGAGA 59.661 61.111 0.00 0.00 0.00 4.04
1145 1168 1.275471 ATGCGTCGACAGTCAACACG 61.275 55.000 17.16 10.89 0.00 4.49
1693 1776 2.273912 ACCCGACGTTCTCCTGGAC 61.274 63.158 0.00 0.00 0.00 4.02
2085 2391 0.923403 CGTCGGTCGTCGTCACTATA 59.077 55.000 2.26 0.00 40.32 1.31
2362 2668 2.412112 GAAGGCGCGGTCGTAGAT 59.588 61.111 8.83 0.00 40.67 1.98
2884 3196 2.572284 GTTCCCCTCCACGTCGAG 59.428 66.667 2.84 2.84 0.00 4.04
2934 3246 1.738099 CTCCGCACTCCGACTTTGG 60.738 63.158 0.00 0.00 40.02 3.28
2953 3265 1.391157 GCATCGAGCTCAGTCTCCCT 61.391 60.000 15.40 0.00 41.15 4.20
2996 3308 8.739972 ACCATTAAAAATGATCCTACTCACAAC 58.260 33.333 1.23 0.00 0.00 3.32
3002 3314 9.975218 AACTACACCATTAAAAATGATCCTACT 57.025 29.630 1.23 0.00 0.00 2.57
3068 3398 5.339008 TGGAGTTGCTCTTACGTCAATAT 57.661 39.130 0.00 0.00 0.00 1.28
3075 3405 1.676014 CCCCTTGGAGTTGCTCTTACG 60.676 57.143 0.00 0.00 0.00 3.18
3120 3450 3.143728 ACCTAACGAACAAAAAGCGGAT 58.856 40.909 0.00 0.00 0.00 4.18
3138 3468 1.529948 TGTCCGTCTGACCGAACCT 60.530 57.895 1.55 0.00 43.78 3.50
3146 3476 1.471287 CTAACATCCGTGTCCGTCTGA 59.529 52.381 0.00 0.00 37.67 3.27
3165 3495 2.030457 CGCCGATCAAAATACGAAAGCT 59.970 45.455 0.00 0.00 0.00 3.74
3261 3605 6.981559 GGCCGGCTTTAATGTTTAATTAATGA 59.018 34.615 28.56 0.00 0.00 2.57
3342 3695 2.228914 CGCCGCCTCGTAGTTTAGC 61.229 63.158 0.00 0.00 0.00 3.09
3382 3735 2.675423 CGGACCCTGAGGACGACA 60.675 66.667 0.00 0.00 38.66 4.35
3392 3745 2.946785 CTTATCTACCTCACGGACCCT 58.053 52.381 0.00 0.00 0.00 4.34
3449 3802 1.134694 CGACATGACGACGCTCTGA 59.865 57.895 12.27 0.00 35.09 3.27
3522 3894 3.764466 CAGCGCCGAGGAGAAGGT 61.764 66.667 2.29 0.00 0.00 3.50
3652 4029 3.461773 CGCCGGTCTGGATGGAGT 61.462 66.667 1.90 0.00 42.00 3.85
3703 4081 2.336809 CCATCGAGCGCTACTCCC 59.663 66.667 11.50 0.00 43.01 4.30
3741 4131 2.427753 CTCCCCTATCAAGCCGGC 59.572 66.667 21.89 21.89 0.00 6.13
3792 4183 4.069232 CACTTGCCCTCTCCGCGA 62.069 66.667 8.23 0.00 0.00 5.87
3863 4266 2.103340 GAGCGAAGAGGACGAGCC 59.897 66.667 0.00 0.00 0.00 4.70
3874 4277 2.110967 CGTCTACCGGGAGAGCGAA 61.111 63.158 25.42 0.37 0.00 4.70
3922 4974 2.759114 CCGCATCCCCATATGGCT 59.241 61.111 16.97 0.00 0.00 4.75
3928 4980 4.108299 TGTTCGCCGCATCCCCAT 62.108 61.111 0.00 0.00 0.00 4.00
3979 5031 1.993369 GCCCTAAATGTGTCTGCGCC 61.993 60.000 4.18 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.