Multiple sequence alignment - TraesCS1A01G257600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G257600 | chr1A | 100.000 | 3176 | 0 | 0 | 1 | 3176 | 449756120 | 449752945 | 0.000000e+00 | 5866.0 |
1 | TraesCS1A01G257600 | chr1A | 82.911 | 790 | 126 | 5 | 1393 | 2176 | 449806725 | 449805939 | 0.000000e+00 | 702.0 |
2 | TraesCS1A01G257600 | chr1A | 88.032 | 376 | 28 | 12 | 1021 | 1380 | 449807160 | 449806786 | 2.260000e-116 | 429.0 |
3 | TraesCS1A01G257600 | chr1A | 73.520 | 321 | 80 | 3 | 1839 | 2155 | 572680958 | 572680639 | 2.000000e-22 | 117.0 |
4 | TraesCS1A01G257600 | chr1A | 92.857 | 56 | 3 | 1 | 2295 | 2350 | 568532163 | 568532217 | 2.630000e-11 | 80.5 |
5 | TraesCS1A01G257600 | chr1A | 91.071 | 56 | 3 | 1 | 2275 | 2330 | 399694282 | 399694335 | 1.220000e-09 | 75.0 |
6 | TraesCS1A01G257600 | chrUn | 91.920 | 1349 | 93 | 6 | 935 | 2269 | 7180061 | 7178715 | 0.000000e+00 | 1873.0 |
7 | TraesCS1A01G257600 | chrUn | 86.979 | 384 | 45 | 4 | 2501 | 2882 | 7155245 | 7154865 | 8.140000e-116 | 427.0 |
8 | TraesCS1A01G257600 | chrUn | 89.496 | 238 | 12 | 2 | 561 | 786 | 7180292 | 7180056 | 4.010000e-74 | 289.0 |
9 | TraesCS1A01G257600 | chrUn | 86.432 | 199 | 26 | 1 | 2976 | 3174 | 7154211 | 7154014 | 1.920000e-52 | 217.0 |
10 | TraesCS1A01G257600 | chrUn | 87.333 | 150 | 10 | 3 | 2349 | 2496 | 7178680 | 7178538 | 2.530000e-36 | 163.0 |
11 | TraesCS1A01G257600 | chr1D | 93.684 | 1235 | 75 | 2 | 935 | 2166 | 349444885 | 349443651 | 0.000000e+00 | 1845.0 |
12 | TraesCS1A01G257600 | chr1D | 92.565 | 538 | 38 | 1 | 1 | 538 | 403938627 | 403939162 | 0.000000e+00 | 771.0 |
13 | TraesCS1A01G257600 | chr1D | 82.832 | 798 | 125 | 6 | 1393 | 2181 | 349472076 | 349471282 | 0.000000e+00 | 704.0 |
14 | TraesCS1A01G257600 | chr1D | 88.441 | 372 | 31 | 6 | 1021 | 1380 | 349472508 | 349472137 | 3.760000e-119 | 438.0 |
15 | TraesCS1A01G257600 | chr1D | 88.612 | 281 | 20 | 7 | 2346 | 2622 | 349443536 | 349443264 | 6.570000e-87 | 331.0 |
16 | TraesCS1A01G257600 | chr1D | 94.156 | 154 | 9 | 0 | 633 | 786 | 349445033 | 349444880 | 5.300000e-58 | 235.0 |
17 | TraesCS1A01G257600 | chr1D | 74.214 | 318 | 77 | 3 | 1839 | 2152 | 476791619 | 476791935 | 9.250000e-26 | 128.0 |
18 | TraesCS1A01G257600 | chr1D | 86.567 | 67 | 8 | 1 | 561 | 627 | 349446604 | 349446539 | 4.390000e-09 | 73.1 |
19 | TraesCS1A01G257600 | chr2B | 91.993 | 537 | 43 | 0 | 1 | 537 | 458086059 | 458085523 | 0.000000e+00 | 754.0 |
20 | TraesCS1A01G257600 | chr2B | 88.298 | 94 | 9 | 2 | 852 | 943 | 89552452 | 89552359 | 9.310000e-21 | 111.0 |
21 | TraesCS1A01G257600 | chr2B | 100.000 | 36 | 0 | 0 | 2295 | 2330 | 160691401 | 160691366 | 2.040000e-07 | 67.6 |
22 | TraesCS1A01G257600 | chr2D | 91.993 | 537 | 42 | 1 | 1 | 537 | 386724169 | 386723634 | 0.000000e+00 | 752.0 |
23 | TraesCS1A01G257600 | chr2D | 91.978 | 536 | 43 | 0 | 1 | 536 | 460331554 | 460331019 | 0.000000e+00 | 752.0 |
24 | TraesCS1A01G257600 | chr1B | 82.219 | 793 | 126 | 9 | 1393 | 2176 | 470965617 | 470964831 | 0.000000e+00 | 669.0 |
25 | TraesCS1A01G257600 | chr1B | 87.848 | 395 | 33 | 7 | 1001 | 1380 | 470966072 | 470965678 | 1.740000e-122 | 449.0 |
26 | TraesCS1A01G257600 | chr1B | 92.500 | 80 | 5 | 1 | 852 | 930 | 673495645 | 673495566 | 2.590000e-21 | 113.0 |
27 | TraesCS1A01G257600 | chr7D | 88.683 | 539 | 55 | 4 | 1 | 536 | 284669642 | 284670177 | 0.000000e+00 | 652.0 |
28 | TraesCS1A01G257600 | chr2A | 88.534 | 532 | 53 | 6 | 7 | 535 | 483447577 | 483448103 | 3.450000e-179 | 638.0 |
29 | TraesCS1A01G257600 | chr2A | 89.655 | 87 | 8 | 1 | 852 | 937 | 670114957 | 670114871 | 3.350000e-20 | 110.0 |
30 | TraesCS1A01G257600 | chr3B | 86.852 | 540 | 61 | 8 | 2 | 536 | 477374636 | 477375170 | 2.110000e-166 | 595.0 |
31 | TraesCS1A01G257600 | chr4B | 91.209 | 91 | 6 | 2 | 854 | 942 | 381380103 | 381380193 | 4.300000e-24 | 122.0 |
32 | TraesCS1A01G257600 | chr3A | 89.583 | 96 | 7 | 3 | 837 | 931 | 727257926 | 727258019 | 5.570000e-23 | 119.0 |
33 | TraesCS1A01G257600 | chr3A | 89.831 | 59 | 4 | 2 | 2272 | 2329 | 64059436 | 64059379 | 1.220000e-09 | 75.0 |
34 | TraesCS1A01G257600 | chr3A | 91.071 | 56 | 3 | 1 | 2275 | 2330 | 109540763 | 109540816 | 1.220000e-09 | 75.0 |
35 | TraesCS1A01G257600 | chr7A | 92.593 | 81 | 5 | 1 | 852 | 931 | 641449167 | 641449087 | 7.200000e-22 | 115.0 |
36 | TraesCS1A01G257600 | chr7A | 87.000 | 100 | 9 | 3 | 839 | 938 | 200010100 | 200010195 | 3.350000e-20 | 110.0 |
37 | TraesCS1A01G257600 | chr5A | 91.566 | 83 | 6 | 1 | 852 | 933 | 708184748 | 708184666 | 2.590000e-21 | 113.0 |
38 | TraesCS1A01G257600 | chr5A | 87.500 | 64 | 3 | 3 | 2269 | 2330 | 70706141 | 70706201 | 5.680000e-08 | 69.4 |
39 | TraesCS1A01G257600 | chr4A | 87.379 | 103 | 7 | 6 | 839 | 939 | 596468815 | 596468913 | 2.590000e-21 | 113.0 |
40 | TraesCS1A01G257600 | chr4A | 100.000 | 44 | 0 | 0 | 2286 | 2329 | 639988892 | 639988849 | 7.300000e-12 | 82.4 |
41 | TraesCS1A01G257600 | chr7B | 92.857 | 56 | 2 | 1 | 2292 | 2345 | 745260629 | 745260574 | 2.630000e-11 | 80.5 |
42 | TraesCS1A01G257600 | chr5B | 94.000 | 50 | 1 | 2 | 2282 | 2330 | 163102352 | 163102304 | 1.220000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G257600 | chr1A | 449752945 | 449756120 | 3175 | True | 5866.000 | 5866 | 100.00000 | 1 | 3176 | 1 | chr1A.!!$R1 | 3175 |
1 | TraesCS1A01G257600 | chr1A | 449805939 | 449807160 | 1221 | True | 565.500 | 702 | 85.47150 | 1021 | 2176 | 2 | chr1A.!!$R3 | 1155 |
2 | TraesCS1A01G257600 | chrUn | 7178538 | 7180292 | 1754 | True | 775.000 | 1873 | 89.58300 | 561 | 2496 | 3 | chrUn.!!$R2 | 1935 |
3 | TraesCS1A01G257600 | chrUn | 7154014 | 7155245 | 1231 | True | 322.000 | 427 | 86.70550 | 2501 | 3174 | 2 | chrUn.!!$R1 | 673 |
4 | TraesCS1A01G257600 | chr1D | 403938627 | 403939162 | 535 | False | 771.000 | 771 | 92.56500 | 1 | 538 | 1 | chr1D.!!$F1 | 537 |
5 | TraesCS1A01G257600 | chr1D | 349443264 | 349446604 | 3340 | True | 621.025 | 1845 | 90.75475 | 561 | 2622 | 4 | chr1D.!!$R1 | 2061 |
6 | TraesCS1A01G257600 | chr1D | 349471282 | 349472508 | 1226 | True | 571.000 | 704 | 85.63650 | 1021 | 2181 | 2 | chr1D.!!$R2 | 1160 |
7 | TraesCS1A01G257600 | chr2B | 458085523 | 458086059 | 536 | True | 754.000 | 754 | 91.99300 | 1 | 537 | 1 | chr2B.!!$R3 | 536 |
8 | TraesCS1A01G257600 | chr2D | 386723634 | 386724169 | 535 | True | 752.000 | 752 | 91.99300 | 1 | 537 | 1 | chr2D.!!$R1 | 536 |
9 | TraesCS1A01G257600 | chr2D | 460331019 | 460331554 | 535 | True | 752.000 | 752 | 91.97800 | 1 | 536 | 1 | chr2D.!!$R2 | 535 |
10 | TraesCS1A01G257600 | chr1B | 470964831 | 470966072 | 1241 | True | 559.000 | 669 | 85.03350 | 1001 | 2176 | 2 | chr1B.!!$R2 | 1175 |
11 | TraesCS1A01G257600 | chr7D | 284669642 | 284670177 | 535 | False | 652.000 | 652 | 88.68300 | 1 | 536 | 1 | chr7D.!!$F1 | 535 |
12 | TraesCS1A01G257600 | chr2A | 483447577 | 483448103 | 526 | False | 638.000 | 638 | 88.53400 | 7 | 535 | 1 | chr2A.!!$F1 | 528 |
13 | TraesCS1A01G257600 | chr3B | 477374636 | 477375170 | 534 | False | 595.000 | 595 | 86.85200 | 2 | 536 | 1 | chr3B.!!$F1 | 534 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
792 | 2296 | 0.249398 | GTGCCATGTACTTCCTCCGT | 59.751 | 55.0 | 0.0 | 0.0 | 0.0 | 4.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2320 | 3910 | 0.387565 | CCCACCGTTTCAAAGTTGGG | 59.612 | 55.0 | 0.0 | 0.0 | 0.0 | 4.12 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 1.134521 | GCCATGGATTACAGGACGTGA | 60.135 | 52.381 | 18.40 | 0.00 | 31.04 | 4.35 |
32 | 33 | 4.142026 | CCATGGATTACAGGACGTGACTTA | 60.142 | 45.833 | 5.56 | 0.00 | 31.04 | 2.24 |
45 | 46 | 3.446161 | ACGTGACTTAGGCTTGCTATACA | 59.554 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
72 | 73 | 2.808543 | GCGGGATGAAGATAATGTGGAC | 59.191 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
142 | 143 | 5.065914 | GCTTCCTTATCATGCAGGTGAATA | 58.934 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
168 | 169 | 3.456277 | AGATCCCAGACACTTTGGATACC | 59.544 | 47.826 | 0.00 | 0.00 | 37.72 | 2.73 |
171 | 172 | 3.263425 | TCCCAGACACTTTGGATACCTTC | 59.737 | 47.826 | 0.00 | 0.00 | 37.96 | 3.46 |
228 | 229 | 1.737793 | CAACCATACAAGCGAGGGTTC | 59.262 | 52.381 | 0.00 | 0.00 | 39.71 | 3.62 |
296 | 299 | 0.320160 | GCGAGAGTGTTTAACCGGGT | 60.320 | 55.000 | 6.32 | 0.00 | 0.00 | 5.28 |
297 | 300 | 1.875157 | GCGAGAGTGTTTAACCGGGTT | 60.875 | 52.381 | 17.83 | 17.83 | 0.00 | 4.11 |
405 | 408 | 5.544176 | AGGGTTGAGTAGATTTGTGAGAGAA | 59.456 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
411 | 414 | 8.753497 | TGAGTAGATTTGTGAGAGAATAGCTA | 57.247 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
470 | 474 | 0.821517 | TGTTCGCATCGTCATAGGGT | 59.178 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
491 | 495 | 5.241728 | GGGTTCTTGTAAACATTCTGCTTCT | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
592 | 596 | 0.950555 | TTGAGATGGACGTGCAGCAC | 60.951 | 55.000 | 26.95 | 21.02 | 0.00 | 4.40 |
608 | 612 | 3.639162 | CACTGCGTGCAAGGAAAAA | 57.361 | 47.368 | 0.79 | 0.00 | 0.00 | 1.94 |
631 | 2135 | 4.080863 | AGTTCGCCTTGACAGGATATTTCT | 60.081 | 41.667 | 0.00 | 0.00 | 44.19 | 2.52 |
667 | 2171 | 3.005367 | GTCAGTCTATTCTAGCCCAGCTC | 59.995 | 52.174 | 0.00 | 0.00 | 40.44 | 4.09 |
787 | 2291 | 3.497879 | GCCGTGCCATGTACTTCC | 58.502 | 61.111 | 0.00 | 0.00 | 0.00 | 3.46 |
788 | 2292 | 1.078426 | GCCGTGCCATGTACTTCCT | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 3.36 |
789 | 2293 | 1.090052 | GCCGTGCCATGTACTTCCTC | 61.090 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
790 | 2294 | 0.462047 | CCGTGCCATGTACTTCCTCC | 60.462 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
791 | 2295 | 0.806102 | CGTGCCATGTACTTCCTCCG | 60.806 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
792 | 2296 | 0.249398 | GTGCCATGTACTTCCTCCGT | 59.751 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
793 | 2297 | 0.981183 | TGCCATGTACTTCCTCCGTT | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
794 | 2298 | 1.066430 | TGCCATGTACTTCCTCCGTTC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
795 | 2299 | 1.742750 | GCCATGTACTTCCTCCGTTCC | 60.743 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
796 | 2300 | 1.470979 | CCATGTACTTCCTCCGTTCCG | 60.471 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
797 | 2301 | 1.475280 | CATGTACTTCCTCCGTTCCGA | 59.525 | 52.381 | 0.00 | 0.00 | 0.00 | 4.55 |
798 | 2302 | 1.619654 | TGTACTTCCTCCGTTCCGAA | 58.380 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
799 | 2303 | 2.173519 | TGTACTTCCTCCGTTCCGAAT | 58.826 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
800 | 2304 | 2.564062 | TGTACTTCCTCCGTTCCGAATT | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
801 | 2305 | 3.763360 | TGTACTTCCTCCGTTCCGAATTA | 59.237 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
802 | 2306 | 3.242549 | ACTTCCTCCGTTCCGAATTAC | 57.757 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
803 | 2307 | 2.564062 | ACTTCCTCCGTTCCGAATTACA | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
804 | 2308 | 2.953466 | TCCTCCGTTCCGAATTACAG | 57.047 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
805 | 2309 | 2.173519 | TCCTCCGTTCCGAATTACAGT | 58.826 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
806 | 2310 | 3.355378 | TCCTCCGTTCCGAATTACAGTA | 58.645 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
807 | 2311 | 3.129287 | TCCTCCGTTCCGAATTACAGTAC | 59.871 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
808 | 2312 | 3.129988 | CCTCCGTTCCGAATTACAGTACT | 59.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
809 | 2313 | 4.381292 | CCTCCGTTCCGAATTACAGTACTT | 60.381 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
810 | 2314 | 4.487948 | TCCGTTCCGAATTACAGTACTTG | 58.512 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
811 | 2315 | 4.022068 | TCCGTTCCGAATTACAGTACTTGT | 60.022 | 41.667 | 0.00 | 0.00 | 43.96 | 3.16 |
812 | 2316 | 4.687483 | CCGTTCCGAATTACAGTACTTGTT | 59.313 | 41.667 | 0.00 | 0.00 | 41.29 | 2.83 |
813 | 2317 | 5.178067 | CCGTTCCGAATTACAGTACTTGTTT | 59.822 | 40.000 | 0.00 | 0.00 | 41.29 | 2.83 |
814 | 2318 | 6.293027 | CCGTTCCGAATTACAGTACTTGTTTT | 60.293 | 38.462 | 0.00 | 0.00 | 41.29 | 2.43 |
815 | 2319 | 7.095691 | CCGTTCCGAATTACAGTACTTGTTTTA | 60.096 | 37.037 | 0.00 | 0.00 | 41.29 | 1.52 |
816 | 2320 | 7.948363 | CGTTCCGAATTACAGTACTTGTTTTAG | 59.052 | 37.037 | 0.00 | 0.00 | 41.29 | 1.85 |
817 | 2321 | 8.981647 | GTTCCGAATTACAGTACTTGTTTTAGA | 58.018 | 33.333 | 0.00 | 0.00 | 41.29 | 2.10 |
818 | 2322 | 9.715121 | TTCCGAATTACAGTACTTGTTTTAGAT | 57.285 | 29.630 | 0.00 | 0.00 | 41.29 | 1.98 |
819 | 2323 | 9.715121 | TCCGAATTACAGTACTTGTTTTAGATT | 57.285 | 29.630 | 0.00 | 0.00 | 41.29 | 2.40 |
862 | 2366 | 8.601047 | ATCTAGCATTATGAAGGTATCTAGCA | 57.399 | 34.615 | 0.00 | 0.00 | 0.00 | 3.49 |
863 | 2367 | 7.831753 | TCTAGCATTATGAAGGTATCTAGCAC | 58.168 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
864 | 2368 | 6.678568 | AGCATTATGAAGGTATCTAGCACT | 57.321 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
865 | 2369 | 7.782897 | AGCATTATGAAGGTATCTAGCACTA | 57.217 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
866 | 2370 | 8.195165 | AGCATTATGAAGGTATCTAGCACTAA | 57.805 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
867 | 2371 | 8.651389 | AGCATTATGAAGGTATCTAGCACTAAA | 58.349 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
868 | 2372 | 9.273016 | GCATTATGAAGGTATCTAGCACTAAAA | 57.727 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
904 | 2408 | 9.862371 | ATACATTCGTATCTAGATAAAGCCAAG | 57.138 | 33.333 | 14.09 | 4.61 | 32.66 | 3.61 |
905 | 2409 | 7.952671 | ACATTCGTATCTAGATAAAGCCAAGA | 58.047 | 34.615 | 14.09 | 0.00 | 0.00 | 3.02 |
906 | 2410 | 7.868415 | ACATTCGTATCTAGATAAAGCCAAGAC | 59.132 | 37.037 | 14.09 | 0.57 | 0.00 | 3.01 |
907 | 2411 | 6.954487 | TCGTATCTAGATAAAGCCAAGACA | 57.046 | 37.500 | 14.09 | 0.00 | 0.00 | 3.41 |
908 | 2412 | 7.342769 | TCGTATCTAGATAAAGCCAAGACAA | 57.657 | 36.000 | 14.09 | 0.00 | 0.00 | 3.18 |
909 | 2413 | 7.426410 | TCGTATCTAGATAAAGCCAAGACAAG | 58.574 | 38.462 | 14.09 | 0.00 | 0.00 | 3.16 |
910 | 2414 | 7.068348 | TCGTATCTAGATAAAGCCAAGACAAGT | 59.932 | 37.037 | 14.09 | 0.00 | 0.00 | 3.16 |
911 | 2415 | 8.350722 | CGTATCTAGATAAAGCCAAGACAAGTA | 58.649 | 37.037 | 14.09 | 0.00 | 0.00 | 2.24 |
915 | 2419 | 9.959721 | TCTAGATAAAGCCAAGACAAGTAATTT | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
921 | 2425 | 7.924103 | AAGCCAAGACAAGTAATTTAAAACG | 57.076 | 32.000 | 0.00 | 0.00 | 0.00 | 3.60 |
922 | 2426 | 6.443792 | AGCCAAGACAAGTAATTTAAAACGG | 58.556 | 36.000 | 0.00 | 0.00 | 0.00 | 4.44 |
923 | 2427 | 6.263617 | AGCCAAGACAAGTAATTTAAAACGGA | 59.736 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
924 | 2428 | 6.581166 | GCCAAGACAAGTAATTTAAAACGGAG | 59.419 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
925 | 2429 | 7.081976 | CCAAGACAAGTAATTTAAAACGGAGG | 58.918 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
926 | 2430 | 6.812879 | AGACAAGTAATTTAAAACGGAGGG | 57.187 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
927 | 2431 | 5.708697 | AGACAAGTAATTTAAAACGGAGGGG | 59.291 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
928 | 2432 | 5.387788 | ACAAGTAATTTAAAACGGAGGGGT | 58.612 | 37.500 | 0.00 | 0.00 | 0.00 | 4.95 |
929 | 2433 | 6.541907 | ACAAGTAATTTAAAACGGAGGGGTA | 58.458 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
930 | 2434 | 6.656270 | ACAAGTAATTTAAAACGGAGGGGTAG | 59.344 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
931 | 2435 | 6.378661 | AGTAATTTAAAACGGAGGGGTAGT | 57.621 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
932 | 2436 | 7.494922 | AGTAATTTAAAACGGAGGGGTAGTA | 57.505 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
933 | 2437 | 7.331026 | AGTAATTTAAAACGGAGGGGTAGTAC | 58.669 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
946 | 2450 | 4.582240 | AGGGGTAGTACGTAGTTTATCTGC | 59.418 | 45.833 | 8.48 | 0.00 | 37.78 | 4.26 |
980 | 2484 | 4.317418 | CGCAACAGATATCGAACAAGTAGC | 60.317 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
981 | 2485 | 4.566759 | GCAACAGATATCGAACAAGTAGCA | 59.433 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
1111 | 2624 | 0.735471 | TGACCATCTCTTCGAGCTCG | 59.265 | 55.000 | 30.03 | 30.03 | 41.45 | 5.03 |
1390 | 2960 | 2.123854 | TCCTCCTATGCGACGGCT | 60.124 | 61.111 | 0.00 | 0.00 | 40.82 | 5.52 |
1398 | 2968 | 1.730612 | CTATGCGACGGCTACGATCTA | 59.269 | 52.381 | 0.00 | 0.00 | 44.60 | 1.98 |
1557 | 3133 | 1.487231 | CTTCGACGAAACCACTGCG | 59.513 | 57.895 | 12.03 | 0.00 | 0.00 | 5.18 |
1576 | 3152 | 2.892425 | GCATCTTCTCCACCGGCG | 60.892 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
1612 | 3188 | 1.655654 | CTCGTGTCCAGCGCTATCG | 60.656 | 63.158 | 10.99 | 10.88 | 39.07 | 2.92 |
1724 | 3300 | 2.806244 | ACACCGATGTACTTGTTCTTGC | 59.194 | 45.455 | 0.00 | 0.00 | 37.26 | 4.01 |
1770 | 3346 | 2.511600 | GCATTCCCGGAGACCGTG | 60.512 | 66.667 | 0.73 | 0.00 | 46.80 | 4.94 |
1872 | 3448 | 1.081840 | GCTCAAGGTCTTTGCACGC | 60.082 | 57.895 | 0.00 | 0.00 | 36.70 | 5.34 |
1890 | 3466 | 1.524002 | CCGGCATCCAGACAGTGAT | 59.476 | 57.895 | 0.00 | 0.00 | 0.00 | 3.06 |
1892 | 3468 | 0.812811 | CGGCATCCAGACAGTGATGG | 60.813 | 60.000 | 11.50 | 11.50 | 39.00 | 3.51 |
2005 | 3584 | 0.302890 | GATTGTCTCCGCGAATGCTG | 59.697 | 55.000 | 8.23 | 0.00 | 39.65 | 4.41 |
2049 | 3628 | 1.079750 | GGAGACGTGGCTGTTCTCC | 60.080 | 63.158 | 11.44 | 11.44 | 39.93 | 3.71 |
2073 | 3652 | 1.738099 | GCTGGACACGATGCGAGTT | 60.738 | 57.895 | 0.00 | 0.00 | 30.02 | 3.01 |
2125 | 3704 | 2.391389 | GCAGCTCACCCGTACAAGC | 61.391 | 63.158 | 0.00 | 0.00 | 34.95 | 4.01 |
2158 | 3737 | 0.590195 | GGCTTTGGCTGATCATAGCG | 59.410 | 55.000 | 0.00 | 0.00 | 44.60 | 4.26 |
2166 | 3745 | 0.246086 | CTGATCATAGCGGGGAGAGC | 59.754 | 60.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2204 | 3790 | 1.085893 | TCGTGTATCAAGTACGGCGA | 58.914 | 50.000 | 16.62 | 0.00 | 39.35 | 5.54 |
2224 | 3811 | 2.789917 | GTGGCAGCTTGCTGATCG | 59.210 | 61.111 | 24.67 | 0.18 | 44.28 | 3.69 |
2253 | 3843 | 0.466922 | GGAGGTTGATGATGCCCTGG | 60.467 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2265 | 3855 | 2.897271 | TGCCCTGGTTGTGTATCAAT | 57.103 | 45.000 | 0.00 | 0.00 | 38.38 | 2.57 |
2269 | 3859 | 4.346418 | TGCCCTGGTTGTGTATCAATTTTT | 59.654 | 37.500 | 0.00 | 0.00 | 38.38 | 1.94 |
2271 | 3861 | 5.741673 | GCCCTGGTTGTGTATCAATTTTTGT | 60.742 | 40.000 | 0.00 | 0.00 | 38.38 | 2.83 |
2272 | 3862 | 5.925969 | CCCTGGTTGTGTATCAATTTTTGTC | 59.074 | 40.000 | 0.00 | 0.00 | 38.38 | 3.18 |
2273 | 3863 | 5.925969 | CCTGGTTGTGTATCAATTTTTGTCC | 59.074 | 40.000 | 0.00 | 0.00 | 38.38 | 4.02 |
2275 | 3865 | 5.067936 | TGGTTGTGTATCAATTTTTGTCCGT | 59.932 | 36.000 | 0.00 | 0.00 | 38.38 | 4.69 |
2278 | 3868 | 7.306341 | GGTTGTGTATCAATTTTTGTCCGTTTC | 60.306 | 37.037 | 0.00 | 0.00 | 38.38 | 2.78 |
2280 | 3870 | 7.484975 | TGTGTATCAATTTTTGTCCGTTTCTT | 58.515 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
2304 | 3894 | 5.531122 | TTTCATGATTACTACTCCCTCCG | 57.469 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
2305 | 3895 | 4.180377 | TCATGATTACTACTCCCTCCGT | 57.820 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
2306 | 3896 | 4.543689 | TCATGATTACTACTCCCTCCGTT | 58.456 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
2307 | 3897 | 4.583489 | TCATGATTACTACTCCCTCCGTTC | 59.417 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
2308 | 3898 | 3.294214 | TGATTACTACTCCCTCCGTTCC | 58.706 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2309 | 3899 | 2.905415 | TTACTACTCCCTCCGTTCCA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2310 | 3900 | 2.905415 | TACTACTCCCTCCGTTCCAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2311 | 3901 | 2.019807 | ACTACTCCCTCCGTTCCAAA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2312 | 3902 | 2.332117 | ACTACTCCCTCCGTTCCAAAA | 58.668 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
2313 | 3903 | 2.910977 | ACTACTCCCTCCGTTCCAAAAT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
2314 | 3904 | 4.098894 | ACTACTCCCTCCGTTCCAAAATA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2315 | 3905 | 3.629142 | ACTCCCTCCGTTCCAAAATAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
2316 | 3906 | 3.178865 | ACTCCCTCCGTTCCAAAATAGA | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
2317 | 3907 | 3.780850 | ACTCCCTCCGTTCCAAAATAGAT | 59.219 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2318 | 3908 | 4.130118 | CTCCCTCCGTTCCAAAATAGATG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
2319 | 3909 | 3.778075 | TCCCTCCGTTCCAAAATAGATGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2320 | 3910 | 3.877508 | CCCTCCGTTCCAAAATAGATGAC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
2321 | 3911 | 3.877508 | CCTCCGTTCCAAAATAGATGACC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
2322 | 3912 | 3.877508 | CTCCGTTCCAAAATAGATGACCC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
2323 | 3913 | 3.264706 | TCCGTTCCAAAATAGATGACCCA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
2324 | 3914 | 4.013728 | CCGTTCCAAAATAGATGACCCAA | 58.986 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
2325 | 3915 | 4.142469 | CCGTTCCAAAATAGATGACCCAAC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
2326 | 3916 | 4.700213 | CGTTCCAAAATAGATGACCCAACT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2327 | 3917 | 5.183140 | CGTTCCAAAATAGATGACCCAACTT | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2328 | 3918 | 6.294508 | CGTTCCAAAATAGATGACCCAACTTT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
2329 | 3919 | 6.588719 | TCCAAAATAGATGACCCAACTTTG | 57.411 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
2330 | 3920 | 6.310941 | TCCAAAATAGATGACCCAACTTTGA | 58.689 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2331 | 3921 | 6.780031 | TCCAAAATAGATGACCCAACTTTGAA | 59.220 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
2332 | 3922 | 7.288852 | TCCAAAATAGATGACCCAACTTTGAAA | 59.711 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2333 | 3923 | 7.384932 | CCAAAATAGATGACCCAACTTTGAAAC | 59.615 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
2334 | 3924 | 5.880054 | ATAGATGACCCAACTTTGAAACG | 57.120 | 39.130 | 0.00 | 0.00 | 0.00 | 3.60 |
2335 | 3925 | 2.884639 | AGATGACCCAACTTTGAAACGG | 59.115 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
2336 | 3926 | 2.131776 | TGACCCAACTTTGAAACGGT | 57.868 | 45.000 | 0.00 | 0.00 | 0.00 | 4.83 |
2337 | 3927 | 1.746220 | TGACCCAACTTTGAAACGGTG | 59.254 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
2338 | 3928 | 1.066454 | GACCCAACTTTGAAACGGTGG | 59.934 | 52.381 | 4.97 | 4.97 | 0.00 | 4.61 |
2339 | 3929 | 0.387565 | CCCAACTTTGAAACGGTGGG | 59.612 | 55.000 | 13.51 | 13.51 | 0.00 | 4.61 |
2340 | 3930 | 1.394618 | CCAACTTTGAAACGGTGGGA | 58.605 | 50.000 | 4.25 | 0.00 | 0.00 | 4.37 |
2341 | 3931 | 1.336755 | CCAACTTTGAAACGGTGGGAG | 59.663 | 52.381 | 4.25 | 0.00 | 0.00 | 4.30 |
2342 | 3932 | 2.021457 | CAACTTTGAAACGGTGGGAGT | 58.979 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2343 | 3933 | 3.207778 | CAACTTTGAAACGGTGGGAGTA | 58.792 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2344 | 3934 | 3.121738 | ACTTTGAAACGGTGGGAGTAG | 57.878 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2363 | 3953 | 6.128138 | AGTAGTAGATTTGCACTTTCCCTT | 57.872 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
2365 | 3955 | 4.985538 | AGTAGATTTGCACTTTCCCTTGA | 58.014 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
2396 | 3990 | 5.779771 | AGGATCCCATGTTCTATCTTCTCTC | 59.220 | 44.000 | 8.55 | 0.00 | 0.00 | 3.20 |
2411 | 4005 | 0.441533 | CTCTCTGTTCATGCGTGTGC | 59.558 | 55.000 | 5.68 | 0.83 | 43.20 | 4.57 |
2481 | 4075 | 2.093783 | GGACTTTGATAACCAGCGAACG | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2485 | 4079 | 0.107897 | TGATAACCAGCGAACGCCAT | 60.108 | 50.000 | 15.44 | 2.72 | 43.17 | 4.40 |
2491 | 4085 | 1.132262 | ACCAGCGAACGCCATATTTTG | 59.868 | 47.619 | 15.44 | 5.59 | 43.17 | 2.44 |
2505 | 4099 | 4.100498 | CCATATTTTGAAGCAATCCCAGCT | 59.900 | 41.667 | 0.00 | 0.00 | 45.97 | 4.24 |
2508 | 4102 | 5.945144 | ATTTTGAAGCAATCCCAGCTAAT | 57.055 | 34.783 | 0.00 | 0.00 | 42.53 | 1.73 |
2561 | 4155 | 1.603456 | TGGCAATTGCTCAACGAAGA | 58.397 | 45.000 | 28.42 | 0.31 | 41.70 | 2.87 |
2619 | 4215 | 7.410728 | CGTTGCAATTTTTCCTTTAGCATAGTG | 60.411 | 37.037 | 0.59 | 0.00 | 0.00 | 2.74 |
2622 | 4218 | 7.598493 | TGCAATTTTTCCTTTAGCATAGTGAAC | 59.402 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2628 | 4224 | 9.959721 | TTTTCCTTTAGCATAGTGAACTCTTAT | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
2669 | 4265 | 2.487762 | TCTGTTTTCACATGGCGATTCC | 59.512 | 45.455 | 0.00 | 0.00 | 30.39 | 3.01 |
2671 | 4267 | 0.808125 | TTTTCACATGGCGATTCCGG | 59.192 | 50.000 | 0.00 | 0.00 | 37.80 | 5.14 |
2672 | 4268 | 1.029408 | TTTCACATGGCGATTCCGGG | 61.029 | 55.000 | 0.00 | 0.00 | 37.80 | 5.73 |
2678 | 4274 | 3.822192 | GGCGATTCCGGGGTTTGC | 61.822 | 66.667 | 0.00 | 2.00 | 36.06 | 3.68 |
2682 | 4278 | 1.001393 | GATTCCGGGGTTTGCTGGA | 60.001 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
2751 | 4347 | 1.659098 | GTATTCGCTTCCACCTTGACG | 59.341 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2757 | 4353 | 1.238439 | CTTCCACCTTGACGTTGCAT | 58.762 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2767 | 4363 | 2.839975 | TGACGTTGCATAAGTTGGTCA | 58.160 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
2778 | 4374 | 6.127196 | TGCATAAGTTGGTCAGGTTTCTTTTT | 60.127 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
2807 | 4403 | 3.410631 | TTCGCTTCCACCTTGACATTA | 57.589 | 42.857 | 0.00 | 0.00 | 0.00 | 1.90 |
2818 | 4414 | 5.163550 | CCACCTTGACATTATAGAGTCGTCA | 60.164 | 44.000 | 0.00 | 0.00 | 37.58 | 4.35 |
2824 | 4420 | 9.497030 | CTTGACATTATAGAGTCGTCATATAGC | 57.503 | 37.037 | 0.00 | 0.00 | 36.55 | 2.97 |
2847 | 4443 | 4.763279 | CCTCCATATGCATATGAAGCACAA | 59.237 | 41.667 | 37.19 | 17.59 | 45.95 | 3.33 |
2922 | 5105 | 2.425143 | ATGCAGGGTCTGTTATGTGG | 57.575 | 50.000 | 0.00 | 0.00 | 33.43 | 4.17 |
2935 | 5118 | 7.552687 | GGTCTGTTATGTGGTTCAATATCAAGA | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
2943 | 5126 | 6.013379 | TGTGGTTCAATATCAAGAACTCTCCT | 60.013 | 38.462 | 12.52 | 0.00 | 42.76 | 3.69 |
2947 | 5130 | 6.244552 | TCAATATCAAGAACTCTCCTGCAT | 57.755 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
2948 | 5131 | 6.053650 | TCAATATCAAGAACTCTCCTGCATG | 58.946 | 40.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2949 | 5132 | 2.775911 | TCAAGAACTCTCCTGCATGG | 57.224 | 50.000 | 0.00 | 0.00 | 37.10 | 3.66 |
2950 | 5133 | 1.980765 | TCAAGAACTCTCCTGCATGGT | 59.019 | 47.619 | 0.00 | 0.00 | 37.07 | 3.55 |
2951 | 5134 | 3.173151 | TCAAGAACTCTCCTGCATGGTA | 58.827 | 45.455 | 0.00 | 0.00 | 37.07 | 3.25 |
2952 | 5135 | 3.196469 | TCAAGAACTCTCCTGCATGGTAG | 59.804 | 47.826 | 0.00 | 0.00 | 37.07 | 3.18 |
2953 | 5136 | 2.114616 | AGAACTCTCCTGCATGGTAGG | 58.885 | 52.381 | 0.00 | 0.00 | 37.07 | 3.18 |
2954 | 5137 | 2.111384 | GAACTCTCCTGCATGGTAGGA | 58.889 | 52.381 | 3.07 | 3.07 | 41.91 | 2.94 |
2959 | 5142 | 0.253044 | TCCTGCATGGTAGGAGTTGC | 59.747 | 55.000 | 0.00 | 0.00 | 39.36 | 4.17 |
2960 | 5143 | 1.091771 | CCTGCATGGTAGGAGTTGCG | 61.092 | 60.000 | 0.00 | 0.00 | 37.52 | 4.85 |
2961 | 5144 | 1.709147 | CTGCATGGTAGGAGTTGCGC | 61.709 | 60.000 | 0.00 | 0.00 | 37.92 | 6.09 |
2962 | 5145 | 1.450312 | GCATGGTAGGAGTTGCGCT | 60.450 | 57.895 | 9.73 | 0.00 | 0.00 | 5.92 |
2963 | 5146 | 1.709147 | GCATGGTAGGAGTTGCGCTG | 61.709 | 60.000 | 9.73 | 0.00 | 0.00 | 5.18 |
2964 | 5147 | 1.450312 | ATGGTAGGAGTTGCGCTGC | 60.450 | 57.895 | 9.73 | 0.48 | 35.61 | 5.25 |
2965 | 5148 | 2.820037 | GGTAGGAGTTGCGCTGCC | 60.820 | 66.667 | 9.73 | 4.52 | 36.05 | 4.85 |
2966 | 5149 | 2.820037 | GTAGGAGTTGCGCTGCCC | 60.820 | 66.667 | 9.73 | 4.69 | 36.05 | 5.36 |
2967 | 5150 | 3.003173 | TAGGAGTTGCGCTGCCCT | 61.003 | 61.111 | 9.73 | 12.33 | 36.05 | 5.19 |
2968 | 5151 | 3.019003 | TAGGAGTTGCGCTGCCCTC | 62.019 | 63.158 | 9.73 | 8.24 | 36.05 | 4.30 |
2980 | 5163 | 0.100146 | CTGCCCTCGTCGTAGGTAAC | 59.900 | 60.000 | 9.08 | 1.56 | 34.56 | 2.50 |
3025 | 5208 | 2.906389 | TGTGTTTCCTCACTGCCTCTAT | 59.094 | 45.455 | 0.00 | 0.00 | 38.90 | 1.98 |
3028 | 5211 | 3.776969 | TGTTTCCTCACTGCCTCTATGAT | 59.223 | 43.478 | 0.00 | 0.00 | 0.00 | 2.45 |
3050 | 5233 | 4.222336 | TGAGGATTGGGTTGATGTTTGTT | 58.778 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
3056 | 5239 | 3.274288 | TGGGTTGATGTTTGTTTTTGGC | 58.726 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
3062 | 5245 | 3.129462 | TGATGTTTGTTTTTGGCAGTCGA | 59.871 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
3063 | 5246 | 3.577649 | TGTTTGTTTTTGGCAGTCGAA | 57.422 | 38.095 | 0.00 | 0.00 | 0.00 | 3.71 |
3064 | 5247 | 3.914312 | TGTTTGTTTTTGGCAGTCGAAA | 58.086 | 36.364 | 0.00 | 0.00 | 0.00 | 3.46 |
3098 | 5281 | 1.141053 | GTTTAGGGAGGCCGATGATGT | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
3107 | 5290 | 1.238439 | GCCGATGATGTATGTTGGGG | 58.762 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
3109 | 5292 | 2.553028 | GCCGATGATGTATGTTGGGGAT | 60.553 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3115 | 5298 | 5.966853 | TGATGTATGTTGGGGATAAGTGA | 57.033 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3119 | 5302 | 6.514012 | TGTATGTTGGGGATAAGTGATGAT | 57.486 | 37.500 | 0.00 | 0.00 | 0.00 | 2.45 |
3120 | 5303 | 6.298361 | TGTATGTTGGGGATAAGTGATGATG | 58.702 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3130 | 5313 | 5.886474 | GGATAAGTGATGATGATGATGCCAT | 59.114 | 40.000 | 0.00 | 0.00 | 35.29 | 4.40 |
3131 | 5314 | 6.377429 | GGATAAGTGATGATGATGATGCCATT | 59.623 | 38.462 | 0.00 | 0.00 | 32.09 | 3.16 |
3133 | 5316 | 3.826729 | AGTGATGATGATGATGCCATTGG | 59.173 | 43.478 | 0.00 | 0.00 | 32.09 | 3.16 |
3147 | 5330 | 1.108776 | CATTGGGCCATCTTGACCAG | 58.891 | 55.000 | 7.26 | 0.00 | 33.96 | 4.00 |
3148 | 5331 | 0.032813 | ATTGGGCCATCTTGACCAGG | 60.033 | 55.000 | 7.26 | 0.00 | 33.96 | 4.45 |
3149 | 5332 | 2.440980 | GGGCCATCTTGACCAGGC | 60.441 | 66.667 | 4.39 | 0.00 | 46.28 | 4.85 |
3154 | 5337 | 1.687612 | CATCTTGACCAGGCCCACT | 59.312 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
3167 | 5350 | 1.812571 | GGCCCACTATGTTGAGTTGTG | 59.187 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
3168 | 5351 | 2.504367 | GCCCACTATGTTGAGTTGTGT | 58.496 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
3174 | 5357 | 2.435372 | ATGTTGAGTTGTGTGTGGGT | 57.565 | 45.000 | 0.00 | 0.00 | 0.00 | 4.51 |
3175 | 5358 | 1.458398 | TGTTGAGTTGTGTGTGGGTG | 58.542 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
9 | 10 | 2.168521 | AGTCACGTCCTGTAATCCATGG | 59.831 | 50.000 | 4.97 | 4.97 | 0.00 | 3.66 |
15 | 16 | 3.097614 | AGCCTAAGTCACGTCCTGTAAT | 58.902 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
28 | 29 | 5.605534 | CTGACATGTATAGCAAGCCTAAGT | 58.394 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
32 | 33 | 2.804572 | CGCTGACATGTATAGCAAGCCT | 60.805 | 50.000 | 25.46 | 0.00 | 37.29 | 4.58 |
45 | 46 | 4.202398 | ACATTATCTTCATCCCGCTGACAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
142 | 143 | 2.240667 | CCAAAGTGTCTGGGATCTCCAT | 59.759 | 50.000 | 3.70 | 0.00 | 46.01 | 3.41 |
174 | 175 | 2.158755 | CCTTGTCTTCAACCACCACTCT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
245 | 246 | 1.442567 | CAAAGCAACCAGGCAGCAA | 59.557 | 52.632 | 6.50 | 0.00 | 35.83 | 3.91 |
281 | 284 | 1.534163 | GCTCAACCCGGTTAAACACTC | 59.466 | 52.381 | 1.43 | 0.00 | 0.00 | 3.51 |
282 | 285 | 1.134037 | TGCTCAACCCGGTTAAACACT | 60.134 | 47.619 | 1.43 | 0.00 | 0.00 | 3.55 |
296 | 299 | 1.777878 | TGGGGGAACTAACTTGCTCAA | 59.222 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
297 | 300 | 1.440618 | TGGGGGAACTAACTTGCTCA | 58.559 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
339 | 342 | 6.428385 | AGCTTCCAAGTTTTAATCTCATCG | 57.572 | 37.500 | 0.00 | 0.00 | 0.00 | 3.84 |
405 | 408 | 8.107095 | TCCAACTCCAACAAAACTAATAGCTAT | 58.893 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
411 | 414 | 5.238650 | CGACTCCAACTCCAACAAAACTAAT | 59.761 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
464 | 468 | 6.485171 | AGCAGAATGTTTACAAGAACCCTAT | 58.515 | 36.000 | 0.00 | 0.00 | 39.31 | 2.57 |
470 | 474 | 8.225603 | AGAAAGAAGCAGAATGTTTACAAGAA | 57.774 | 30.769 | 0.00 | 0.00 | 40.56 | 2.52 |
506 | 510 | 4.577693 | TCGAGAGTACGCCAATAGTGTATT | 59.422 | 41.667 | 0.00 | 0.00 | 43.16 | 1.89 |
507 | 511 | 4.132336 | TCGAGAGTACGCCAATAGTGTAT | 58.868 | 43.478 | 0.00 | 0.00 | 43.16 | 2.29 |
542 | 546 | 3.400255 | GGTTAGCGAGTGGGAAATATCC | 58.600 | 50.000 | 0.00 | 0.00 | 45.77 | 2.59 |
543 | 547 | 3.057734 | CGGTTAGCGAGTGGGAAATATC | 58.942 | 50.000 | 0.00 | 0.00 | 0.00 | 1.63 |
544 | 548 | 2.805657 | GCGGTTAGCGAGTGGGAAATAT | 60.806 | 50.000 | 8.35 | 0.00 | 35.41 | 1.28 |
545 | 549 | 1.472026 | GCGGTTAGCGAGTGGGAAATA | 60.472 | 52.381 | 8.35 | 0.00 | 35.41 | 1.40 |
546 | 550 | 0.743345 | GCGGTTAGCGAGTGGGAAAT | 60.743 | 55.000 | 8.35 | 0.00 | 35.41 | 2.17 |
547 | 551 | 1.375013 | GCGGTTAGCGAGTGGGAAA | 60.375 | 57.895 | 8.35 | 0.00 | 35.41 | 3.13 |
548 | 552 | 2.263540 | GCGGTTAGCGAGTGGGAA | 59.736 | 61.111 | 8.35 | 0.00 | 35.41 | 3.97 |
558 | 562 | 4.201851 | CCATCTCAAAATGTCAGCGGTTAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
559 | 563 | 3.689161 | CCATCTCAAAATGTCAGCGGTTA | 59.311 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
592 | 596 | 2.119457 | GAACTTTTTCCTTGCACGCAG | 58.881 | 47.619 | 0.00 | 0.00 | 0.00 | 5.18 |
597 | 601 | 1.398692 | AGGCGAACTTTTTCCTTGCA | 58.601 | 45.000 | 0.00 | 0.00 | 0.00 | 4.08 |
604 | 608 | 2.650322 | TCCTGTCAAGGCGAACTTTTT | 58.350 | 42.857 | 0.00 | 0.00 | 44.11 | 1.94 |
608 | 612 | 3.914426 | AATATCCTGTCAAGGCGAACT | 57.086 | 42.857 | 0.00 | 0.00 | 44.11 | 3.01 |
631 | 2135 | 4.672587 | AGACTGACTAGTTCTGCAAACA | 57.327 | 40.909 | 0.00 | 0.00 | 37.25 | 2.83 |
667 | 2171 | 2.399611 | GTCCCGCTGCGAAATTCG | 59.600 | 61.111 | 25.45 | 11.47 | 43.89 | 3.34 |
786 | 2290 | 8.720311 | ACAAGTACTGTAATTCGGAACGGAGG | 62.720 | 46.154 | 0.00 | 0.00 | 45.78 | 4.30 |
787 | 2291 | 5.848880 | ACAAGTACTGTAATTCGGAACGGAG | 60.849 | 44.000 | 0.00 | 0.00 | 45.78 | 4.63 |
788 | 2292 | 4.022068 | ACAAGTACTGTAATTCGGAACGGA | 60.022 | 41.667 | 0.00 | 0.00 | 45.78 | 4.69 |
789 | 2293 | 4.240096 | ACAAGTACTGTAATTCGGAACGG | 58.760 | 43.478 | 0.00 | 0.00 | 45.78 | 4.44 |
791 | 2295 | 8.981647 | TCTAAAACAAGTACTGTAATTCGGAAC | 58.018 | 33.333 | 0.00 | 0.00 | 37.23 | 3.62 |
792 | 2296 | 9.715121 | ATCTAAAACAAGTACTGTAATTCGGAA | 57.285 | 29.630 | 0.00 | 0.00 | 37.23 | 4.30 |
793 | 2297 | 9.715121 | AATCTAAAACAAGTACTGTAATTCGGA | 57.285 | 29.630 | 0.00 | 0.00 | 37.23 | 4.55 |
836 | 2340 | 9.700831 | TGCTAGATACCTTCATAATGCTAGATA | 57.299 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
837 | 2341 | 8.474025 | GTGCTAGATACCTTCATAATGCTAGAT | 58.526 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
838 | 2342 | 7.671819 | AGTGCTAGATACCTTCATAATGCTAGA | 59.328 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
839 | 2343 | 7.835822 | AGTGCTAGATACCTTCATAATGCTAG | 58.164 | 38.462 | 0.00 | 0.00 | 0.00 | 3.42 |
840 | 2344 | 7.782897 | AGTGCTAGATACCTTCATAATGCTA | 57.217 | 36.000 | 0.00 | 0.00 | 0.00 | 3.49 |
841 | 2345 | 6.678568 | AGTGCTAGATACCTTCATAATGCT | 57.321 | 37.500 | 0.00 | 0.00 | 0.00 | 3.79 |
842 | 2346 | 8.833231 | TTTAGTGCTAGATACCTTCATAATGC | 57.167 | 34.615 | 0.00 | 0.00 | 0.00 | 3.56 |
878 | 2382 | 9.862371 | CTTGGCTTTATCTAGATACGAATGTAT | 57.138 | 33.333 | 12.12 | 0.00 | 43.97 | 2.29 |
879 | 2383 | 9.074576 | TCTTGGCTTTATCTAGATACGAATGTA | 57.925 | 33.333 | 12.12 | 0.00 | 34.45 | 2.29 |
880 | 2384 | 7.868415 | GTCTTGGCTTTATCTAGATACGAATGT | 59.132 | 37.037 | 12.12 | 0.00 | 0.00 | 2.71 |
881 | 2385 | 7.867909 | TGTCTTGGCTTTATCTAGATACGAATG | 59.132 | 37.037 | 12.12 | 4.00 | 0.00 | 2.67 |
882 | 2386 | 7.952671 | TGTCTTGGCTTTATCTAGATACGAAT | 58.047 | 34.615 | 12.12 | 0.00 | 0.00 | 3.34 |
883 | 2387 | 7.342769 | TGTCTTGGCTTTATCTAGATACGAA | 57.657 | 36.000 | 12.12 | 4.53 | 0.00 | 3.85 |
884 | 2388 | 6.954487 | TGTCTTGGCTTTATCTAGATACGA | 57.046 | 37.500 | 12.12 | 3.72 | 0.00 | 3.43 |
885 | 2389 | 7.203910 | ACTTGTCTTGGCTTTATCTAGATACG | 58.796 | 38.462 | 12.12 | 7.74 | 0.00 | 3.06 |
889 | 2393 | 9.959721 | AAATTACTTGTCTTGGCTTTATCTAGA | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
895 | 2399 | 9.453325 | CGTTTTAAATTACTTGTCTTGGCTTTA | 57.547 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
896 | 2400 | 7.436970 | CCGTTTTAAATTACTTGTCTTGGCTTT | 59.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
897 | 2401 | 6.921307 | CCGTTTTAAATTACTTGTCTTGGCTT | 59.079 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
898 | 2402 | 6.263617 | TCCGTTTTAAATTACTTGTCTTGGCT | 59.736 | 34.615 | 0.00 | 0.00 | 0.00 | 4.75 |
899 | 2403 | 6.440436 | TCCGTTTTAAATTACTTGTCTTGGC | 58.560 | 36.000 | 0.00 | 0.00 | 0.00 | 4.52 |
900 | 2404 | 7.081976 | CCTCCGTTTTAAATTACTTGTCTTGG | 58.918 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
901 | 2405 | 7.081976 | CCCTCCGTTTTAAATTACTTGTCTTG | 58.918 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
902 | 2406 | 6.208007 | CCCCTCCGTTTTAAATTACTTGTCTT | 59.792 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
903 | 2407 | 5.708697 | CCCCTCCGTTTTAAATTACTTGTCT | 59.291 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
904 | 2408 | 5.474532 | ACCCCTCCGTTTTAAATTACTTGTC | 59.525 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
905 | 2409 | 5.387788 | ACCCCTCCGTTTTAAATTACTTGT | 58.612 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
906 | 2410 | 5.970317 | ACCCCTCCGTTTTAAATTACTTG | 57.030 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
907 | 2411 | 6.782986 | ACTACCCCTCCGTTTTAAATTACTT | 58.217 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
908 | 2412 | 6.378661 | ACTACCCCTCCGTTTTAAATTACT | 57.621 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
909 | 2413 | 6.255670 | CGTACTACCCCTCCGTTTTAAATTAC | 59.744 | 42.308 | 0.00 | 0.00 | 0.00 | 1.89 |
910 | 2414 | 6.071051 | ACGTACTACCCCTCCGTTTTAAATTA | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
911 | 2415 | 5.178061 | CGTACTACCCCTCCGTTTTAAATT | 58.822 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
912 | 2416 | 4.222810 | ACGTACTACCCCTCCGTTTTAAAT | 59.777 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
913 | 2417 | 3.576550 | ACGTACTACCCCTCCGTTTTAAA | 59.423 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
914 | 2418 | 3.161866 | ACGTACTACCCCTCCGTTTTAA | 58.838 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
915 | 2419 | 2.802719 | ACGTACTACCCCTCCGTTTTA | 58.197 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
916 | 2420 | 1.632589 | ACGTACTACCCCTCCGTTTT | 58.367 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
917 | 2421 | 2.290960 | ACTACGTACTACCCCTCCGTTT | 60.291 | 50.000 | 0.00 | 0.00 | 33.32 | 3.60 |
918 | 2422 | 1.282157 | ACTACGTACTACCCCTCCGTT | 59.718 | 52.381 | 0.00 | 0.00 | 33.32 | 4.44 |
919 | 2423 | 0.912486 | ACTACGTACTACCCCTCCGT | 59.088 | 55.000 | 0.00 | 0.00 | 35.68 | 4.69 |
920 | 2424 | 2.044123 | AACTACGTACTACCCCTCCG | 57.956 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
921 | 2425 | 5.240403 | CAGATAAACTACGTACTACCCCTCC | 59.760 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
922 | 2426 | 5.278218 | GCAGATAAACTACGTACTACCCCTC | 60.278 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
923 | 2427 | 4.582240 | GCAGATAAACTACGTACTACCCCT | 59.418 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
924 | 2428 | 4.339247 | TGCAGATAAACTACGTACTACCCC | 59.661 | 45.833 | 0.00 | 0.00 | 0.00 | 4.95 |
925 | 2429 | 5.163622 | TGTGCAGATAAACTACGTACTACCC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
926 | 2430 | 5.883661 | TGTGCAGATAAACTACGTACTACC | 58.116 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
927 | 2431 | 5.970023 | CCTGTGCAGATAAACTACGTACTAC | 59.030 | 44.000 | 0.02 | 0.00 | 0.00 | 2.73 |
928 | 2432 | 5.882000 | TCCTGTGCAGATAAACTACGTACTA | 59.118 | 40.000 | 0.02 | 0.00 | 0.00 | 1.82 |
929 | 2433 | 4.703575 | TCCTGTGCAGATAAACTACGTACT | 59.296 | 41.667 | 0.02 | 0.00 | 0.00 | 2.73 |
930 | 2434 | 4.990257 | TCCTGTGCAGATAAACTACGTAC | 58.010 | 43.478 | 0.02 | 0.00 | 0.00 | 3.67 |
931 | 2435 | 5.648178 | TTCCTGTGCAGATAAACTACGTA | 57.352 | 39.130 | 0.02 | 0.00 | 0.00 | 3.57 |
932 | 2436 | 4.530710 | TTCCTGTGCAGATAAACTACGT | 57.469 | 40.909 | 0.02 | 0.00 | 0.00 | 3.57 |
933 | 2437 | 6.422776 | AAATTCCTGTGCAGATAAACTACG | 57.577 | 37.500 | 0.02 | 0.00 | 0.00 | 3.51 |
946 | 2450 | 3.837213 | ATCTGTTGCGAAATTCCTGTG | 57.163 | 42.857 | 0.00 | 0.00 | 0.00 | 3.66 |
980 | 2484 | 4.114997 | GCACGGGGAATGGCGTTG | 62.115 | 66.667 | 0.00 | 0.00 | 0.00 | 4.10 |
998 | 2502 | 1.665916 | CCCGCTGATGACGCCATAG | 60.666 | 63.158 | 0.00 | 0.00 | 32.09 | 2.23 |
1300 | 2822 | 4.087892 | GAGGGAGAAGCGGCTGCA | 62.088 | 66.667 | 21.93 | 0.00 | 46.23 | 4.41 |
1467 | 3043 | 4.373116 | TCGAGCAGGAACACGCCC | 62.373 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1678 | 3254 | 5.701290 | CACTTCCTTCGATTCCCCAATATAC | 59.299 | 44.000 | 0.00 | 0.00 | 0.00 | 1.47 |
1724 | 3300 | 2.820767 | GAACTCCGCCGTGGACTCAG | 62.821 | 65.000 | 0.00 | 0.00 | 43.74 | 3.35 |
1787 | 3363 | 0.461961 | CACAACCCGAGAGATCCCTC | 59.538 | 60.000 | 0.00 | 0.00 | 39.72 | 4.30 |
1833 | 3409 | 4.046462 | GCTCGTTGTTTATCAGGCGTATA | 58.954 | 43.478 | 0.00 | 0.00 | 0.00 | 1.47 |
1872 | 3448 | 0.812811 | CATCACTGTCTGGATGCCGG | 60.813 | 60.000 | 0.00 | 0.00 | 35.03 | 6.13 |
1890 | 3466 | 1.672030 | CAGCAACCACTCATCGCCA | 60.672 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
1892 | 3468 | 1.364626 | CTCCAGCAACCACTCATCGC | 61.365 | 60.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2049 | 3628 | 1.959899 | GCATCGTGTCCAGCTCAACG | 61.960 | 60.000 | 0.00 | 0.00 | 0.00 | 4.10 |
2073 | 3652 | 4.467062 | CTCTCGTGCTCGCGCTCA | 62.467 | 66.667 | 5.56 | 0.00 | 36.97 | 4.26 |
2158 | 3737 | 3.157252 | TCATCGCCTGCTCTCCCC | 61.157 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
2178 | 3757 | 4.096311 | CGTACTTGATACACGAACAGAGG | 58.904 | 47.826 | 0.00 | 0.00 | 37.89 | 3.69 |
2204 | 3790 | 3.914579 | ATCAGCAAGCTGCCACGCT | 62.915 | 57.895 | 16.89 | 0.00 | 46.52 | 5.07 |
2224 | 3811 | 5.363939 | CATCATCAACCTCCTCTTTCCTAC | 58.636 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2253 | 3843 | 7.434013 | AGAAACGGACAAAAATTGATACACAAC | 59.566 | 33.333 | 0.00 | 0.00 | 41.52 | 3.32 |
2280 | 3870 | 6.070424 | ACGGAGGGAGTAGTAATCATGAAAAA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 1.94 |
2285 | 3875 | 4.262079 | GGAACGGAGGGAGTAGTAATCATG | 60.262 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2286 | 3876 | 3.896272 | GGAACGGAGGGAGTAGTAATCAT | 59.104 | 47.826 | 0.00 | 0.00 | 0.00 | 2.45 |
2288 | 3878 | 3.294214 | TGGAACGGAGGGAGTAGTAATC | 58.706 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2289 | 3879 | 3.393426 | TGGAACGGAGGGAGTAGTAAT | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
2290 | 3880 | 2.905415 | TGGAACGGAGGGAGTAGTAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2293 | 3883 | 3.629142 | ATTTTGGAACGGAGGGAGTAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2294 | 3884 | 4.355549 | TCTATTTTGGAACGGAGGGAGTA | 58.644 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2296 | 3886 | 3.906720 | TCTATTTTGGAACGGAGGGAG | 57.093 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
2297 | 3887 | 3.778075 | TCATCTATTTTGGAACGGAGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2298 | 3888 | 3.877508 | GTCATCTATTTTGGAACGGAGGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2299 | 3889 | 3.877508 | GGTCATCTATTTTGGAACGGAGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2300 | 3890 | 3.877508 | GGGTCATCTATTTTGGAACGGAG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
2301 | 3891 | 3.264706 | TGGGTCATCTATTTTGGAACGGA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
2302 | 3892 | 3.616219 | TGGGTCATCTATTTTGGAACGG | 58.384 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
2303 | 3893 | 4.700213 | AGTTGGGTCATCTATTTTGGAACG | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
2304 | 3894 | 6.590234 | AAGTTGGGTCATCTATTTTGGAAC | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
2305 | 3895 | 6.780031 | TCAAAGTTGGGTCATCTATTTTGGAA | 59.220 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
2306 | 3896 | 6.310941 | TCAAAGTTGGGTCATCTATTTTGGA | 58.689 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2307 | 3897 | 6.588719 | TCAAAGTTGGGTCATCTATTTTGG | 57.411 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
2308 | 3898 | 7.114811 | CGTTTCAAAGTTGGGTCATCTATTTTG | 59.885 | 37.037 | 0.00 | 0.00 | 0.00 | 2.44 |
2309 | 3899 | 7.145323 | CGTTTCAAAGTTGGGTCATCTATTTT | 58.855 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2310 | 3900 | 6.294508 | CCGTTTCAAAGTTGGGTCATCTATTT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
2311 | 3901 | 5.183140 | CCGTTTCAAAGTTGGGTCATCTATT | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2312 | 3902 | 4.700213 | CCGTTTCAAAGTTGGGTCATCTAT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
2313 | 3903 | 4.069304 | CCGTTTCAAAGTTGGGTCATCTA | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2314 | 3904 | 2.884639 | CCGTTTCAAAGTTGGGTCATCT | 59.115 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2315 | 3905 | 2.621526 | ACCGTTTCAAAGTTGGGTCATC | 59.378 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
2316 | 3906 | 2.360801 | CACCGTTTCAAAGTTGGGTCAT | 59.639 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
2317 | 3907 | 1.746220 | CACCGTTTCAAAGTTGGGTCA | 59.254 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2318 | 3908 | 1.066454 | CCACCGTTTCAAAGTTGGGTC | 59.934 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
2319 | 3909 | 1.107945 | CCACCGTTTCAAAGTTGGGT | 58.892 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
2320 | 3910 | 0.387565 | CCCACCGTTTCAAAGTTGGG | 59.612 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2321 | 3911 | 1.336755 | CTCCCACCGTTTCAAAGTTGG | 59.663 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
2322 | 3912 | 2.021457 | ACTCCCACCGTTTCAAAGTTG | 58.979 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2323 | 3913 | 2.430248 | ACTCCCACCGTTTCAAAGTT | 57.570 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2324 | 3914 | 2.436911 | ACTACTCCCACCGTTTCAAAGT | 59.563 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2325 | 3915 | 3.121738 | ACTACTCCCACCGTTTCAAAG | 57.878 | 47.619 | 0.00 | 0.00 | 0.00 | 2.77 |
2326 | 3916 | 3.896888 | TCTACTACTCCCACCGTTTCAAA | 59.103 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2327 | 3917 | 3.499338 | TCTACTACTCCCACCGTTTCAA | 58.501 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
2328 | 3918 | 3.159213 | TCTACTACTCCCACCGTTTCA | 57.841 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
2329 | 3919 | 4.732672 | AATCTACTACTCCCACCGTTTC | 57.267 | 45.455 | 0.00 | 0.00 | 0.00 | 2.78 |
2330 | 3920 | 4.828829 | CAAATCTACTACTCCCACCGTTT | 58.171 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
2331 | 3921 | 3.369157 | GCAAATCTACTACTCCCACCGTT | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
2332 | 3922 | 2.167900 | GCAAATCTACTACTCCCACCGT | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
2333 | 3923 | 2.167693 | TGCAAATCTACTACTCCCACCG | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2334 | 3924 | 3.197983 | AGTGCAAATCTACTACTCCCACC | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
2335 | 3925 | 4.473477 | AGTGCAAATCTACTACTCCCAC | 57.527 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
2336 | 3926 | 5.488341 | GAAAGTGCAAATCTACTACTCCCA | 58.512 | 41.667 | 0.00 | 0.00 | 0.00 | 4.37 |
2337 | 3927 | 4.876679 | GGAAAGTGCAAATCTACTACTCCC | 59.123 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2338 | 3928 | 4.876679 | GGGAAAGTGCAAATCTACTACTCC | 59.123 | 45.833 | 0.00 | 0.00 | 32.37 | 3.85 |
2339 | 3929 | 5.735766 | AGGGAAAGTGCAAATCTACTACTC | 58.264 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2340 | 3930 | 5.763876 | AGGGAAAGTGCAAATCTACTACT | 57.236 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2341 | 3931 | 5.938125 | TCAAGGGAAAGTGCAAATCTACTAC | 59.062 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2342 | 3932 | 6.121776 | TCAAGGGAAAGTGCAAATCTACTA | 57.878 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2343 | 3933 | 4.985538 | TCAAGGGAAAGTGCAAATCTACT | 58.014 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2344 | 3934 | 5.705609 | TTCAAGGGAAAGTGCAAATCTAC | 57.294 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
2372 | 3966 | 5.725490 | AGAGAAGATAGAACATGGGATCCT | 58.275 | 41.667 | 12.58 | 0.00 | 0.00 | 3.24 |
2396 | 3990 | 2.174107 | CCGCACACGCATGAACAG | 59.826 | 61.111 | 0.00 | 0.00 | 38.40 | 3.16 |
2411 | 4005 | 3.062466 | TCGAGGAGAGGCACACCG | 61.062 | 66.667 | 0.00 | 0.00 | 42.76 | 4.94 |
2412 | 4006 | 1.939769 | GAGTCGAGGAGAGGCACACC | 61.940 | 65.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2413 | 4007 | 1.509004 | GAGTCGAGGAGAGGCACAC | 59.491 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
2414 | 4008 | 1.679305 | GGAGTCGAGGAGAGGCACA | 60.679 | 63.158 | 0.00 | 0.00 | 0.00 | 4.57 |
2415 | 4009 | 1.379309 | AGGAGTCGAGGAGAGGCAC | 60.379 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
2416 | 4010 | 1.379176 | CAGGAGTCGAGGAGAGGCA | 60.379 | 63.158 | 0.00 | 0.00 | 0.00 | 4.75 |
2417 | 4011 | 2.781158 | GCAGGAGTCGAGGAGAGGC | 61.781 | 68.421 | 0.00 | 0.00 | 0.00 | 4.70 |
2481 | 4075 | 4.374399 | CTGGGATTGCTTCAAAATATGGC | 58.626 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
2485 | 4079 | 6.380846 | ACATTAGCTGGGATTGCTTCAAAATA | 59.619 | 34.615 | 0.00 | 0.00 | 41.46 | 1.40 |
2491 | 4085 | 2.620585 | GGACATTAGCTGGGATTGCTTC | 59.379 | 50.000 | 0.00 | 0.00 | 41.46 | 3.86 |
2550 | 4144 | 5.786401 | AATATTGTCACTCTTCGTTGAGC | 57.214 | 39.130 | 7.20 | 0.00 | 37.58 | 4.26 |
2594 | 4188 | 7.598493 | TCACTATGCTAAAGGAAAAATTGCAAC | 59.402 | 33.333 | 0.00 | 0.00 | 32.66 | 4.17 |
2596 | 4190 | 7.225784 | TCACTATGCTAAAGGAAAAATTGCA | 57.774 | 32.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2628 | 4224 | 8.458573 | AACAGATGGAAGTGTTATGTTGTTTA | 57.541 | 30.769 | 0.00 | 0.00 | 35.10 | 2.01 |
2634 | 4230 | 6.545666 | TGTGAAAACAGATGGAAGTGTTATGT | 59.454 | 34.615 | 0.00 | 0.00 | 35.83 | 2.29 |
2638 | 4234 | 5.221303 | CCATGTGAAAACAGATGGAAGTGTT | 60.221 | 40.000 | 17.55 | 0.00 | 45.65 | 3.32 |
2640 | 4236 | 4.801891 | CCATGTGAAAACAGATGGAAGTG | 58.198 | 43.478 | 17.55 | 0.00 | 45.65 | 3.16 |
2646 | 4242 | 3.770263 | ATCGCCATGTGAAAACAGATG | 57.230 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
2649 | 4245 | 2.728846 | CGGAATCGCCATGTGAAAACAG | 60.729 | 50.000 | 0.00 | 0.00 | 35.94 | 3.16 |
2669 | 4265 | 1.256812 | AGATTTTCCAGCAAACCCCG | 58.743 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
2718 | 4314 | 5.467063 | GGAAGCGAATACCTCTAAAGAATGG | 59.533 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2721 | 4317 | 5.416947 | GTGGAAGCGAATACCTCTAAAGAA | 58.583 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2728 | 4324 | 2.093658 | TCAAGGTGGAAGCGAATACCTC | 60.094 | 50.000 | 6.29 | 0.00 | 42.47 | 3.85 |
2730 | 4326 | 2.007608 | GTCAAGGTGGAAGCGAATACC | 58.992 | 52.381 | 0.00 | 0.00 | 40.95 | 2.73 |
2751 | 4347 | 4.278419 | AGAAACCTGACCAACTTATGCAAC | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
2778 | 4374 | 2.092968 | AGGTGGAAGCGAATGCATCTAA | 60.093 | 45.455 | 0.00 | 0.00 | 46.23 | 2.10 |
2779 | 4375 | 1.486310 | AGGTGGAAGCGAATGCATCTA | 59.514 | 47.619 | 0.00 | 0.00 | 46.23 | 1.98 |
2807 | 4403 | 5.180810 | TGGAGGCTATATGACGACTCTAT | 57.819 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
2818 | 4414 | 7.166851 | GCTTCATATGCATATGGAGGCTATAT | 58.833 | 38.462 | 38.54 | 10.09 | 43.56 | 0.86 |
2824 | 4420 | 4.329392 | TGTGCTTCATATGCATATGGAGG | 58.671 | 43.478 | 38.54 | 28.77 | 43.56 | 4.30 |
2847 | 4443 | 4.657814 | ACACATAACAAGGTCCAAGGAT | 57.342 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
2904 | 5083 | 1.064003 | ACCACATAACAGACCCTGCA | 58.936 | 50.000 | 0.00 | 0.00 | 34.37 | 4.41 |
2905 | 5084 | 2.084546 | GAACCACATAACAGACCCTGC | 58.915 | 52.381 | 0.00 | 0.00 | 34.37 | 4.85 |
2906 | 5085 | 3.417069 | TGAACCACATAACAGACCCTG | 57.583 | 47.619 | 0.00 | 0.00 | 37.52 | 4.45 |
2907 | 5086 | 4.657814 | ATTGAACCACATAACAGACCCT | 57.342 | 40.909 | 0.00 | 0.00 | 0.00 | 4.34 |
2909 | 5088 | 7.552687 | TCTTGATATTGAACCACATAACAGACC | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
2910 | 5089 | 8.492673 | TCTTGATATTGAACCACATAACAGAC | 57.507 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
2911 | 5090 | 8.946085 | GTTCTTGATATTGAACCACATAACAGA | 58.054 | 33.333 | 0.00 | 0.00 | 37.26 | 3.41 |
2912 | 5091 | 8.950210 | AGTTCTTGATATTGAACCACATAACAG | 58.050 | 33.333 | 11.17 | 0.00 | 42.32 | 3.16 |
2922 | 5105 | 5.877012 | TGCAGGAGAGTTCTTGATATTGAAC | 59.123 | 40.000 | 0.00 | 0.00 | 41.84 | 3.18 |
2935 | 5118 | 2.254152 | TCCTACCATGCAGGAGAGTT | 57.746 | 50.000 | 0.00 | 0.00 | 41.22 | 3.01 |
2943 | 5126 | 1.745115 | GCGCAACTCCTACCATGCA | 60.745 | 57.895 | 0.30 | 0.00 | 38.69 | 3.96 |
2947 | 5130 | 2.047274 | GCAGCGCAACTCCTACCA | 60.047 | 61.111 | 11.47 | 0.00 | 0.00 | 3.25 |
2948 | 5131 | 2.820037 | GGCAGCGCAACTCCTACC | 60.820 | 66.667 | 11.47 | 0.00 | 0.00 | 3.18 |
2949 | 5132 | 2.820037 | GGGCAGCGCAACTCCTAC | 60.820 | 66.667 | 11.47 | 0.00 | 0.00 | 3.18 |
2950 | 5133 | 3.003173 | AGGGCAGCGCAACTCCTA | 61.003 | 61.111 | 11.47 | 0.00 | 0.00 | 2.94 |
2951 | 5134 | 4.400961 | GAGGGCAGCGCAACTCCT | 62.401 | 66.667 | 11.47 | 10.92 | 31.26 | 3.69 |
2959 | 5142 | 4.554363 | CCTACGACGAGGGCAGCG | 62.554 | 72.222 | 0.00 | 0.00 | 32.39 | 5.18 |
2960 | 5143 | 1.660560 | TTACCTACGACGAGGGCAGC | 61.661 | 60.000 | 0.00 | 0.00 | 41.36 | 5.25 |
2961 | 5144 | 0.100146 | GTTACCTACGACGAGGGCAG | 59.900 | 60.000 | 0.00 | 0.00 | 41.36 | 4.85 |
2962 | 5145 | 0.322816 | AGTTACCTACGACGAGGGCA | 60.323 | 55.000 | 0.00 | 0.00 | 41.36 | 5.36 |
2963 | 5146 | 0.100146 | CAGTTACCTACGACGAGGGC | 59.900 | 60.000 | 0.00 | 0.17 | 41.36 | 5.19 |
2964 | 5147 | 1.669779 | CTCAGTTACCTACGACGAGGG | 59.330 | 57.143 | 0.00 | 5.56 | 41.36 | 4.30 |
2965 | 5148 | 2.354259 | ACTCAGTTACCTACGACGAGG | 58.646 | 52.381 | 0.00 | 6.83 | 42.89 | 4.63 |
2966 | 5149 | 4.153835 | AGAAACTCAGTTACCTACGACGAG | 59.846 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
2967 | 5150 | 4.067896 | AGAAACTCAGTTACCTACGACGA | 58.932 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2968 | 5151 | 4.156915 | CAGAAACTCAGTTACCTACGACG | 58.843 | 47.826 | 0.00 | 0.00 | 0.00 | 5.12 |
2969 | 5152 | 4.483311 | CCAGAAACTCAGTTACCTACGAC | 58.517 | 47.826 | 0.00 | 0.00 | 0.00 | 4.34 |
2970 | 5153 | 3.057033 | GCCAGAAACTCAGTTACCTACGA | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.43 |
2971 | 5154 | 3.251571 | GCCAGAAACTCAGTTACCTACG | 58.748 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2972 | 5155 | 4.267349 | TGCCAGAAACTCAGTTACCTAC | 57.733 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2973 | 5156 | 4.323485 | CCATGCCAGAAACTCAGTTACCTA | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
2974 | 5157 | 3.560025 | CCATGCCAGAAACTCAGTTACCT | 60.560 | 47.826 | 0.00 | 0.00 | 0.00 | 3.08 |
2980 | 5163 | 2.187073 | GCCCATGCCAGAAACTCAG | 58.813 | 57.895 | 0.00 | 0.00 | 0.00 | 3.35 |
2994 | 5177 | 1.152830 | GGAAACACAAGAGGGCCCA | 59.847 | 57.895 | 27.56 | 0.00 | 0.00 | 5.36 |
2999 | 5182 | 1.876156 | GCAGTGAGGAAACACAAGAGG | 59.124 | 52.381 | 0.00 | 0.00 | 42.45 | 3.69 |
3025 | 5208 | 4.320546 | AACATCAACCCAATCCTCATCA | 57.679 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
3028 | 5211 | 3.843422 | ACAAACATCAACCCAATCCTCA | 58.157 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
3038 | 5221 | 4.259770 | CGACTGCCAAAAACAAACATCAAC | 60.260 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3050 | 5233 | 3.795150 | GCAAGTGATTTCGACTGCCAAAA | 60.795 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
3056 | 5239 | 3.320626 | TCTGAGCAAGTGATTTCGACTG | 58.679 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
3062 | 5245 | 5.006386 | CCCTAAACTCTGAGCAAGTGATTT | 58.994 | 41.667 | 4.19 | 0.00 | 0.00 | 2.17 |
3063 | 5246 | 4.287067 | TCCCTAAACTCTGAGCAAGTGATT | 59.713 | 41.667 | 4.19 | 0.00 | 0.00 | 2.57 |
3064 | 5247 | 3.840666 | TCCCTAAACTCTGAGCAAGTGAT | 59.159 | 43.478 | 4.19 | 0.00 | 0.00 | 3.06 |
3098 | 5281 | 6.762077 | TCATCATCACTTATCCCCAACATA | 57.238 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
3107 | 5290 | 7.251281 | CAATGGCATCATCATCATCACTTATC | 58.749 | 38.462 | 0.00 | 0.00 | 32.24 | 1.75 |
3109 | 5292 | 5.475564 | CCAATGGCATCATCATCATCACTTA | 59.524 | 40.000 | 0.00 | 0.00 | 32.24 | 2.24 |
3130 | 5313 | 1.383799 | CCTGGTCAAGATGGCCCAA | 59.616 | 57.895 | 0.00 | 0.00 | 42.76 | 4.12 |
3131 | 5314 | 3.089838 | CCTGGTCAAGATGGCCCA | 58.910 | 61.111 | 0.00 | 0.00 | 42.76 | 5.36 |
3147 | 5330 | 1.812571 | CACAACTCAACATAGTGGGCC | 59.187 | 52.381 | 0.00 | 0.00 | 0.00 | 5.80 |
3148 | 5331 | 2.226437 | CACACAACTCAACATAGTGGGC | 59.774 | 50.000 | 0.00 | 0.00 | 34.65 | 5.36 |
3149 | 5332 | 3.250762 | CACACACAACTCAACATAGTGGG | 59.749 | 47.826 | 0.00 | 0.00 | 39.42 | 4.61 |
3154 | 5337 | 3.210227 | CACCCACACACAACTCAACATA | 58.790 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.