Multiple sequence alignment - TraesCS1A01G256700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G256700 chr1A 100.000 3112 0 0 386 3497 449188735 449191846 0.000000e+00 5747
1 TraesCS1A01G256700 chr1A 100.000 297 0 0 1 297 449188350 449188646 1.830000e-152 549
2 TraesCS1A01G256700 chr1A 99.327 297 2 0 1 297 552383466 552383762 3.970000e-149 538
3 TraesCS1A01G256700 chr1B 95.147 2782 86 24 739 3497 470308338 470305583 0.000000e+00 4344
4 TraesCS1A01G256700 chr1B 99.327 297 2 0 1 297 364307900 364307604 3.970000e-149 538
5 TraesCS1A01G256700 chr1D 93.213 2814 101 36 735 3497 348672875 348670101 0.000000e+00 4056
6 TraesCS1A01G256700 chr5A 98.580 352 5 0 386 737 488273160 488273511 1.070000e-174 623
7 TraesCS1A01G256700 chr5A 96.936 359 10 1 386 744 403302736 403303093 4.990000e-168 601
8 TraesCS1A01G256700 chr5A 99.663 297 1 0 1 297 403302471 403302767 8.540000e-151 544
9 TraesCS1A01G256700 chr2B 98.575 351 5 0 386 736 39435654 39436004 3.830000e-174 621
10 TraesCS1A01G256700 chr2B 99.663 297 1 0 1 297 461110581 461110877 8.540000e-151 544
11 TraesCS1A01G256700 chr2B 99.663 297 1 0 1 297 689370141 689369845 8.540000e-151 544
12 TraesCS1A01G256700 chr7A 98.571 350 5 0 386 735 333077389 333077738 1.380000e-173 619
13 TraesCS1A01G256700 chr7A 98.286 350 6 0 386 735 22970205 22970554 6.420000e-172 614
14 TraesCS1A01G256700 chr7A 99.327 297 2 0 1 297 121055147 121055443 3.970000e-149 538
15 TraesCS1A01G256700 chr7A 99.327 297 2 0 1 297 333077124 333077420 3.970000e-149 538
16 TraesCS1A01G256700 chr3A 98.034 356 6 1 386 741 604319679 604320033 4.960000e-173 617
17 TraesCS1A01G256700 chr5B 98.286 350 6 0 386 735 609134729 609134380 6.420000e-172 614
18 TraesCS1A01G256700 chr4A 98.286 350 6 0 386 735 152589728 152590077 6.420000e-172 614
19 TraesCS1A01G256700 chr2A 97.734 353 8 0 386 738 145431806 145431454 2.980000e-170 608
20 TraesCS1A01G256700 chr2A 99.663 297 1 0 1 297 100136001 100136297 8.540000e-151 544
21 TraesCS1A01G256700 chr6B 99.327 297 1 1 1 297 439407157 439406862 1.430000e-148 536
22 TraesCS1A01G256700 chr3B 79.241 395 64 15 1759 2146 573619880 573619497 3.460000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G256700 chr1A 449188350 449191846 3496 False 3148.0 5747 100.0000 1 3497 2 chr1A.!!$F2 3496
1 TraesCS1A01G256700 chr1B 470305583 470308338 2755 True 4344.0 4344 95.1470 739 3497 1 chr1B.!!$R2 2758
2 TraesCS1A01G256700 chr1D 348670101 348672875 2774 True 4056.0 4056 93.2130 735 3497 1 chr1D.!!$R1 2762
3 TraesCS1A01G256700 chr5A 403302471 403303093 622 False 572.5 601 98.2995 1 744 2 chr5A.!!$F2 743
4 TraesCS1A01G256700 chr7A 333077124 333077738 614 False 578.5 619 98.9490 1 735 2 chr7A.!!$F3 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 283 0.035725 GTCTAAGGGTTTGGGTCGGG 60.036 60.0 0.00 0.0 0.00 5.14 F
284 285 0.322187 CTAAGGGTTTGGGTCGGGTG 60.322 60.0 0.00 0.0 0.00 4.61 F
1687 1707 0.462581 CTCCCGTCCATGTGACCATG 60.463 60.0 8.25 0.0 46.65 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 1906 0.102481 CTGTGAGGCTTACGGCGTAT 59.898 55.0 21.66 5.47 42.94 3.06 R
1913 1933 0.982852 TCGATCTGATGGGGGTGCTT 60.983 55.0 0.00 0.00 0.00 3.91 R
2500 2534 0.107312 CCACCCATCTCTTGCTCCAG 60.107 60.0 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
271 272 2.124695 GGGCCGCAAGTCTAAGGG 60.125 66.667 0.00 0.00 0.00 3.95
272 273 2.669240 GGCCGCAAGTCTAAGGGT 59.331 61.111 0.00 0.00 0.00 4.34
273 274 1.002502 GGCCGCAAGTCTAAGGGTT 60.003 57.895 0.00 0.00 0.00 4.11
274 275 0.608308 GGCCGCAAGTCTAAGGGTTT 60.608 55.000 0.00 0.00 0.00 3.27
275 276 0.521735 GCCGCAAGTCTAAGGGTTTG 59.478 55.000 0.00 0.00 0.00 2.93
276 277 1.165270 CCGCAAGTCTAAGGGTTTGG 58.835 55.000 0.00 0.00 0.00 3.28
277 278 1.165270 CGCAAGTCTAAGGGTTTGGG 58.835 55.000 0.00 0.00 0.00 4.12
278 279 1.544759 CGCAAGTCTAAGGGTTTGGGT 60.545 52.381 0.00 0.00 0.00 4.51
279 280 2.160205 GCAAGTCTAAGGGTTTGGGTC 58.840 52.381 0.00 0.00 0.00 4.46
280 281 2.423577 CAAGTCTAAGGGTTTGGGTCG 58.576 52.381 0.00 0.00 0.00 4.79
281 282 0.981943 AGTCTAAGGGTTTGGGTCGG 59.018 55.000 0.00 0.00 0.00 4.79
282 283 0.035725 GTCTAAGGGTTTGGGTCGGG 60.036 60.000 0.00 0.00 0.00 5.14
283 284 0.474273 TCTAAGGGTTTGGGTCGGGT 60.474 55.000 0.00 0.00 0.00 5.28
284 285 0.322187 CTAAGGGTTTGGGTCGGGTG 60.322 60.000 0.00 0.00 0.00 4.61
285 286 1.781153 TAAGGGTTTGGGTCGGGTGG 61.781 60.000 0.00 0.00 0.00 4.61
286 287 4.671590 GGGTTTGGGTCGGGTGGG 62.672 72.222 0.00 0.00 0.00 4.61
287 288 4.671590 GGTTTGGGTCGGGTGGGG 62.672 72.222 0.00 0.00 0.00 4.96
288 289 4.671590 GTTTGGGTCGGGTGGGGG 62.672 72.222 0.00 0.00 0.00 5.40
294 295 4.636435 GTCGGGTGGGGGTGTGTG 62.636 72.222 0.00 0.00 0.00 3.82
494 495 2.212327 GCCCAAGAGCTAGGCACTA 58.788 57.895 10.75 0.00 46.34 2.74
737 738 5.363101 GTCAGATATGTGATTTCTGCCTCA 58.637 41.667 5.77 0.00 37.97 3.86
769 770 3.756677 CACGCGAGCACTCACACG 61.757 66.667 15.93 1.32 0.00 4.49
787 788 3.074412 CACGAGTGTGGGAATAAAAGCT 58.926 45.455 0.00 0.00 42.59 3.74
788 789 4.250464 CACGAGTGTGGGAATAAAAGCTA 58.750 43.478 0.00 0.00 42.59 3.32
789 790 4.330074 CACGAGTGTGGGAATAAAAGCTAG 59.670 45.833 0.00 0.00 42.59 3.42
790 791 3.309954 CGAGTGTGGGAATAAAAGCTAGC 59.690 47.826 6.62 6.62 0.00 3.42
791 792 4.261801 GAGTGTGGGAATAAAAGCTAGCA 58.738 43.478 18.83 0.00 0.00 3.49
792 793 4.860022 AGTGTGGGAATAAAAGCTAGCAT 58.140 39.130 18.83 0.65 0.00 3.79
793 794 4.884164 AGTGTGGGAATAAAAGCTAGCATC 59.116 41.667 18.83 4.94 0.00 3.91
859 861 3.399181 TAAGCTCTGGCCCCCACG 61.399 66.667 0.00 0.00 39.73 4.94
947 951 1.300931 CACACCACACCACTCCTCG 60.301 63.158 0.00 0.00 0.00 4.63
983 992 2.033194 GCCAGCACTTCACGTACCC 61.033 63.158 0.00 0.00 0.00 3.69
984 993 1.369692 CCAGCACTTCACGTACCCA 59.630 57.895 0.00 0.00 0.00 4.51
985 994 0.670546 CCAGCACTTCACGTACCCAG 60.671 60.000 0.00 0.00 0.00 4.45
986 995 1.004918 AGCACTTCACGTACCCAGC 60.005 57.895 0.00 0.00 0.00 4.85
987 996 2.033194 GCACTTCACGTACCCAGCC 61.033 63.158 0.00 0.00 0.00 4.85
1527 1545 4.101448 ATCTGGTCCAGGCACGCC 62.101 66.667 19.11 0.00 31.51 5.68
1584 1602 0.895559 CCAAGGACTGGTTCAAGGGC 60.896 60.000 0.00 0.00 40.78 5.19
1650 1670 9.349713 CTCTTCATCCTCCAGGTCTATATATAC 57.650 40.741 0.00 0.00 36.34 1.47
1665 1685 1.531423 TATACCTAGCTCGCTTCCCG 58.469 55.000 0.00 0.00 38.61 5.14
1666 1686 1.179814 ATACCTAGCTCGCTTCCCGG 61.180 60.000 0.00 0.00 37.59 5.73
1667 1687 4.593864 CCTAGCTCGCTTCCCGGC 62.594 72.222 0.00 0.00 37.59 6.13
1668 1688 4.593864 CTAGCTCGCTTCCCGGCC 62.594 72.222 0.00 0.00 37.59 6.13
1687 1707 0.462581 CTCCCGTCCATGTGACCATG 60.463 60.000 8.25 0.00 46.65 3.66
1714 1734 5.098211 GCATGAACTGAAAATCCTAACAGC 58.902 41.667 0.00 0.00 34.25 4.40
1720 1740 4.938226 ACTGAAAATCCTAACAGCTAGTGC 59.062 41.667 0.00 0.00 40.05 4.40
1883 1903 3.390521 ATGAACCTCCTCGCCGCA 61.391 61.111 0.00 0.00 0.00 5.69
1906 1926 0.961857 TACGCCGTAAGCCTCACAGA 60.962 55.000 0.00 0.00 38.78 3.41
1911 1931 1.645034 CGTAAGCCTCACAGACCATG 58.355 55.000 0.00 0.00 0.00 3.66
1913 1933 0.983467 TAAGCCTCACAGACCATGCA 59.017 50.000 0.00 0.00 0.00 3.96
1918 1938 0.520404 CTCACAGACCATGCAAGCAC 59.480 55.000 0.00 0.00 0.00 4.40
1919 1939 0.890542 TCACAGACCATGCAAGCACC 60.891 55.000 0.00 0.00 0.00 5.01
1920 1940 1.604593 ACAGACCATGCAAGCACCC 60.605 57.895 0.00 0.00 0.00 4.61
1951 1971 8.285394 CAGATCGAGACAATAATTAAACATGGG 58.715 37.037 0.00 0.00 0.00 4.00
1960 1980 9.131791 ACAATAATTAAACATGGGATGGTACTC 57.868 33.333 0.00 0.00 33.60 2.59
2219 2250 7.432252 GCAACAGTCAGTTACATTATTATTGCC 59.568 37.037 0.00 0.00 38.74 4.52
2230 2261 7.633193 ACATTATTATTGCCGTTTCTGGTTA 57.367 32.000 0.00 0.00 0.00 2.85
2355 2386 3.499737 GTGGCGATCAAGGGCGTG 61.500 66.667 0.00 0.00 0.00 5.34
2500 2534 1.188769 CGACGACGAGAACTGATCGC 61.189 60.000 0.00 0.00 43.91 4.58
2514 2548 1.202498 TGATCGCTGGAGCAAGAGATG 60.202 52.381 5.31 0.00 36.91 2.90
2544 2578 1.228245 ATGCTGTGGTGGTGTGGTC 60.228 57.895 0.00 0.00 0.00 4.02
2586 2620 6.432472 AGTGGTGGTAGTAACAGTAAGAGTAC 59.568 42.308 0.00 0.00 0.00 2.73
2588 2622 6.432162 TGGTGGTAGTAACAGTAAGAGTACAG 59.568 42.308 0.00 0.00 32.12 2.74
2591 2625 7.335422 GTGGTAGTAACAGTAAGAGTACAGCTA 59.665 40.741 0.00 0.00 32.12 3.32
2592 2626 7.335422 TGGTAGTAACAGTAAGAGTACAGCTAC 59.665 40.741 0.00 0.00 32.12 3.58
2594 2628 7.380431 AGTAACAGTAAGAGTACAGCTACTG 57.620 40.000 18.99 18.99 40.30 2.74
2595 2629 5.646577 AACAGTAAGAGTACAGCTACTGG 57.353 43.478 22.09 11.29 39.19 4.00
2597 2631 4.459685 ACAGTAAGAGTACAGCTACTGGTG 59.540 45.833 22.09 0.00 46.18 4.17
2598 2632 4.017808 AGTAAGAGTACAGCTACTGGTGG 58.982 47.826 0.00 0.00 45.14 4.61
2601 2635 2.168496 GAGTACAGCTACTGGTGGTGA 58.832 52.381 0.00 0.00 45.14 4.02
2726 2770 1.208293 CAGCTACCCCCTTCAGAAGTC 59.792 57.143 9.41 0.00 0.00 3.01
2828 2876 2.050918 AGGCTATCCTGCTTCCTAACC 58.949 52.381 0.00 0.00 42.34 2.85
2831 2879 1.344763 CTATCCTGCTTCCTAACCCCG 59.655 57.143 0.00 0.00 0.00 5.73
2928 2979 0.036022 GGCAGCACTCCTCAAACTCT 59.964 55.000 0.00 0.00 0.00 3.24
3017 3069 1.338140 CGTTTTCGCTACGTACCGC 59.662 57.895 5.41 1.11 36.22 5.68
3066 3118 9.388506 AGCCATATGTATCTTACATTATTCAGC 57.611 33.333 5.55 2.53 46.69 4.26
3098 3150 4.272489 CCCATTGCATCTTGAGAGGTTAA 58.728 43.478 0.00 0.00 0.00 2.01
3131 3187 3.889815 CTCCCACCATACATGTGATGTT 58.110 45.455 9.11 0.00 41.63 2.71
3147 3203 4.455533 GTGATGTTTGTGCTAGTGATTCCA 59.544 41.667 0.00 0.00 0.00 3.53
3196 3252 5.358160 GCAACTATGGCCTTAAAGAATCAGT 59.642 40.000 3.32 0.00 0.00 3.41
3369 3425 4.853142 CCGAGGTCCCATCCCCGA 62.853 72.222 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.071115 TGCTAATTTGGGTTGTTTAGGCTTT 59.929 36.000 0.00 0.00 0.00 3.51
271 272 4.671590 CCCCCACCCGACCCAAAC 62.672 72.222 0.00 0.00 0.00 2.93
277 278 4.636435 CACACACCCCCACCCGAC 62.636 72.222 0.00 0.00 0.00 4.79
385 386 1.004200 ACCCGACCCAAACGCTTAG 60.004 57.895 0.00 0.00 0.00 2.18
386 387 1.301874 CACCCGACCCAAACGCTTA 60.302 57.895 0.00 0.00 0.00 3.09
387 388 2.593436 CACCCGACCCAAACGCTT 60.593 61.111 0.00 0.00 0.00 4.68
388 389 4.636435 CCACCCGACCCAAACGCT 62.636 66.667 0.00 0.00 0.00 5.07
737 738 2.112198 CGTGCCACTGGTGTGTTGT 61.112 57.895 0.00 0.00 42.34 3.32
765 766 2.812011 GCTTTTATTCCCACACTCGTGT 59.188 45.455 0.00 0.00 46.17 4.49
769 770 4.261801 TGCTAGCTTTTATTCCCACACTC 58.738 43.478 17.23 0.00 0.00 3.51
790 791 3.646976 CGCTCGCTGCATGGGATG 61.647 66.667 0.00 0.00 43.06 3.51
791 792 3.390183 TTCGCTCGCTGCATGGGAT 62.390 57.895 0.00 0.00 43.06 3.85
792 793 4.081185 TTCGCTCGCTGCATGGGA 62.081 61.111 0.00 2.49 43.06 4.37
793 794 3.570638 CTTCGCTCGCTGCATGGG 61.571 66.667 0.00 0.00 43.06 4.00
869 871 2.660236 GGCTCGTATTTATAGCCGTTCG 59.340 50.000 0.00 0.00 45.82 3.95
902 904 0.179062 CTCCTTCGCCTGAGGAATGG 60.179 60.000 0.65 1.06 0.00 3.16
947 951 2.352032 CGGGGAGTGGAGTGGAGTC 61.352 68.421 0.00 0.00 0.00 3.36
984 993 4.377760 ATTGCTGGCTGGCTGGCT 62.378 61.111 18.27 0.00 42.34 4.75
985 994 4.143333 CATTGCTGGCTGGCTGGC 62.143 66.667 11.09 11.09 42.18 4.85
986 995 3.458163 CCATTGCTGGCTGGCTGG 61.458 66.667 9.98 1.33 35.23 4.85
1246 1264 2.100584 CGAGGAGGAAGATGTTGAGGAG 59.899 54.545 0.00 0.00 0.00 3.69
1584 1602 3.055602 TGGCGATGATGAGGAATATGGAG 60.056 47.826 0.00 0.00 0.00 3.86
1650 1670 4.593864 GCCGGGAAGCGAGCTAGG 62.594 72.222 2.18 1.56 0.00 3.02
1666 1686 2.125106 GTCACATGGACGGGAGGC 60.125 66.667 0.00 0.00 36.65 4.70
1687 1707 4.119442 AGGATTTTCAGTTCATGCATGC 57.881 40.909 22.25 11.82 0.00 4.06
1720 1740 3.766691 GGCCCTGCATGCACCAAG 61.767 66.667 18.46 7.02 0.00 3.61
1862 1882 1.596934 GGCGAGGAGGTTCATGTCA 59.403 57.895 0.00 0.00 0.00 3.58
1883 1903 1.067582 GAGGCTTACGGCGTATGCT 59.932 57.895 38.77 29.69 42.94 3.79
1886 1906 0.102481 CTGTGAGGCTTACGGCGTAT 59.898 55.000 21.66 5.47 42.94 3.06
1906 1926 3.242492 ATGGGGGTGCTTGCATGGT 62.242 57.895 0.00 0.00 0.00 3.55
1911 1931 1.076485 ATCTGATGGGGGTGCTTGC 60.076 57.895 0.00 0.00 0.00 4.01
1913 1933 0.982852 TCGATCTGATGGGGGTGCTT 60.983 55.000 0.00 0.00 0.00 3.91
1918 1938 1.123077 TTGTCTCGATCTGATGGGGG 58.877 55.000 0.00 0.00 0.00 5.40
1919 1939 4.607293 TTATTGTCTCGATCTGATGGGG 57.393 45.455 0.00 0.00 0.00 4.96
1920 1940 8.499162 GTTTAATTATTGTCTCGATCTGATGGG 58.501 37.037 0.00 0.00 0.00 4.00
1960 1980 8.718734 CATACATATTCACAGAGATTCATGGTG 58.281 37.037 0.00 0.00 0.00 4.17
2214 2245 2.279935 TGGTAACCAGAAACGGCAAT 57.720 45.000 0.00 0.00 0.00 3.56
2230 2261 2.134287 CGGACCCGATGATCCTGGT 61.134 63.158 1.54 1.32 42.83 4.00
2355 2386 4.115199 ATCCTGCCGTTGCCCTCC 62.115 66.667 0.00 0.00 36.33 4.30
2500 2534 0.107312 CCACCCATCTCTTGCTCCAG 60.107 60.000 0.00 0.00 0.00 3.86
2514 2548 1.386533 CACAGCATCAAGATCCACCC 58.613 55.000 0.00 0.00 0.00 4.61
2586 2620 1.134580 CCAGATCACCACCAGTAGCTG 60.135 57.143 0.00 0.00 0.00 4.24
2588 2622 0.905357 ACCAGATCACCACCAGTAGC 59.095 55.000 0.00 0.00 0.00 3.58
2591 2625 3.137544 TGTTTTACCAGATCACCACCAGT 59.862 43.478 0.00 0.00 0.00 4.00
2592 2626 3.750371 TGTTTTACCAGATCACCACCAG 58.250 45.455 0.00 0.00 0.00 4.00
2594 2628 5.221048 GCATATGTTTTACCAGATCACCACC 60.221 44.000 4.29 0.00 0.00 4.61
2595 2629 5.590259 AGCATATGTTTTACCAGATCACCAC 59.410 40.000 4.29 0.00 0.00 4.16
2597 2631 5.590259 ACAGCATATGTTTTACCAGATCACC 59.410 40.000 4.29 0.00 39.96 4.02
2598 2632 6.316140 TCACAGCATATGTTTTACCAGATCAC 59.684 38.462 4.29 0.00 41.41 3.06
2601 2635 5.824624 CCTCACAGCATATGTTTTACCAGAT 59.175 40.000 4.29 0.00 41.41 2.90
2667 2708 6.609212 AGATAGATAAGACAGGCTTTCACAGA 59.391 38.462 3.13 0.00 38.05 3.41
2668 2709 6.700960 CAGATAGATAAGACAGGCTTTCACAG 59.299 42.308 3.13 0.00 38.05 3.66
2669 2710 6.577103 CAGATAGATAAGACAGGCTTTCACA 58.423 40.000 3.13 0.00 38.05 3.58
2670 2711 5.465056 GCAGATAGATAAGACAGGCTTTCAC 59.535 44.000 3.13 0.00 38.05 3.18
2672 2713 5.605534 TGCAGATAGATAAGACAGGCTTTC 58.394 41.667 0.00 0.00 38.05 2.62
2673 2714 5.620738 TGCAGATAGATAAGACAGGCTTT 57.379 39.130 0.00 0.00 38.05 3.51
2674 2715 5.543405 AGATGCAGATAGATAAGACAGGCTT 59.457 40.000 0.00 0.00 40.68 4.35
3066 3118 0.325602 ATGCAATGGGGGCAAAGTTG 59.674 50.000 0.00 0.00 45.60 3.16
3073 3125 0.396139 TCTCAAGATGCAATGGGGGC 60.396 55.000 0.00 0.00 0.00 5.80
3098 3150 7.090319 TGTATGGTGGGAGCATTATCTTAAT 57.910 36.000 0.00 0.00 37.51 1.40
3131 3187 4.072131 GGTTCTTGGAATCACTAGCACAA 58.928 43.478 0.00 0.00 0.00 3.33
3147 3203 7.168905 CCAATTACTTAAGACAGAGGGTTCTT 58.831 38.462 10.09 0.00 0.00 2.52
3196 3252 6.595326 CCAGCTCTCATCACTTGTTAATAACA 59.405 38.462 1.08 1.08 40.21 2.41
3320 3376 6.289064 TCTTTATTCCCGGCTAAAAGAGATC 58.711 40.000 12.64 0.00 32.70 2.75
3326 3382 5.430007 TCGAATCTTTATTCCCGGCTAAAA 58.570 37.500 0.00 0.00 38.66 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.