Multiple sequence alignment - TraesCS1A01G256500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G256500 chr1A 100.000 3029 0 0 1 3029 449143820 449146848 0.000000e+00 5594.0
1 TraesCS1A01G256500 chr1A 94.643 112 6 0 2141 2252 489169788 489169899 1.120000e-39 174.0
2 TraesCS1A01G256500 chr1D 90.125 1276 59 19 864 2100 348714400 348713153 0.000000e+00 1596.0
3 TraesCS1A01G256500 chr1D 86.505 741 67 14 2303 3029 348707691 348706970 0.000000e+00 784.0
4 TraesCS1A01G256500 chr1D 88.654 520 39 10 340 857 86215510 86216011 1.540000e-172 616.0
5 TraesCS1A01G256500 chr1D 87.221 493 45 9 2521 3001 348706607 348706121 2.050000e-151 545.0
6 TraesCS1A01G256500 chr1D 89.189 259 17 4 76 332 348714672 348714423 2.270000e-81 313.0
7 TraesCS1A01G256500 chr1D 95.413 109 5 0 2144 2252 74144700 74144808 1.120000e-39 174.0
8 TraesCS1A01G256500 chr1D 93.162 117 8 0 2144 2260 459859146 459859030 4.010000e-39 172.0
9 TraesCS1A01G256500 chr1B 91.417 1002 42 14 859 1832 470419522 470418537 0.000000e+00 1334.0
10 TraesCS1A01G256500 chr1B 87.500 440 44 6 345 779 33926264 33926697 5.830000e-137 497.0
11 TraesCS1A01G256500 chr1B 89.313 393 20 9 2648 3029 470418058 470417677 9.830000e-130 473.0
12 TraesCS1A01G256500 chr1B 92.857 322 22 1 1824 2145 470418459 470418139 1.640000e-127 466.0
13 TraesCS1A01G256500 chr1B 89.873 79 6 2 2243 2321 470418147 470418071 1.920000e-17 100.0
14 TraesCS1A01G256500 chr2A 89.538 411 35 6 338 747 752802319 752801916 5.790000e-142 514.0
15 TraesCS1A01G256500 chr2A 85.336 491 46 13 341 830 4807461 4806996 4.540000e-133 484.0
16 TraesCS1A01G256500 chr2A 91.667 132 9 2 2128 2259 527504604 527504733 6.670000e-42 182.0
17 TraesCS1A01G256500 chr2D 90.439 387 30 4 362 747 621028653 621028273 1.250000e-138 503.0
18 TraesCS1A01G256500 chr2D 81.839 435 59 8 340 773 614840543 614840128 6.220000e-92 348.0
19 TraesCS1A01G256500 chr2D 80.435 138 23 4 2314 2450 82659634 82659768 5.340000e-18 102.0
20 TraesCS1A01G256500 chr4A 84.466 515 47 13 340 853 603760270 603759788 7.600000e-131 477.0
21 TraesCS1A01G256500 chr4A 84.078 515 49 13 340 853 603830868 603830386 1.640000e-127 466.0
22 TraesCS1A01G256500 chr5A 83.796 216 29 5 340 553 437161178 437161389 1.840000e-47 200.0
23 TraesCS1A01G256500 chr5A 93.220 118 8 0 2142 2259 299273010 299272893 1.120000e-39 174.0
24 TraesCS1A01G256500 chr4B 92.683 123 6 2 2144 2265 378530477 378530597 1.120000e-39 174.0
25 TraesCS1A01G256500 chr2B 93.277 119 6 2 2144 2260 621062634 621062516 1.120000e-39 174.0
26 TraesCS1A01G256500 chr3B 91.406 128 8 3 2144 2269 822718759 822718633 4.010000e-39 172.0
27 TraesCS1A01G256500 chr3B 80.272 147 25 3 2314 2457 763954442 763954297 1.150000e-19 108.0
28 TraesCS1A01G256500 chr3A 90.698 129 10 2 2126 2254 71250416 71250290 1.440000e-38 171.0
29 TraesCS1A01G256500 chr5D 84.375 64 10 0 2314 2377 535591510 535591573 2.520000e-06 63.9
30 TraesCS1A01G256500 chr3D 100.000 33 0 0 2314 2346 77323156 77323124 9.070000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G256500 chr1A 449143820 449146848 3028 False 5594.00 5594 100.000 1 3029 1 chr1A.!!$F1 3028
1 TraesCS1A01G256500 chr1D 348713153 348714672 1519 True 954.50 1596 89.657 76 2100 2 chr1D.!!$R3 2024
2 TraesCS1A01G256500 chr1D 348706121 348707691 1570 True 664.50 784 86.863 2303 3029 2 chr1D.!!$R2 726
3 TraesCS1A01G256500 chr1D 86215510 86216011 501 False 616.00 616 88.654 340 857 1 chr1D.!!$F2 517
4 TraesCS1A01G256500 chr1B 470417677 470419522 1845 True 593.25 1334 90.865 859 3029 4 chr1B.!!$R1 2170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 784 0.03213 TCTATCATCTCGCGGCAACC 59.968 55.0 6.13 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2377 2508 0.38539 CAACAACACCCAAGCTGACC 59.615 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.975693 TCCAGCGAACAAGGAATTAATTT 57.024 34.783 1.43 0.00 0.00 1.82
23 24 5.949735 TCCAGCGAACAAGGAATTAATTTC 58.050 37.500 1.43 0.00 0.00 2.17
24 25 5.475220 TCCAGCGAACAAGGAATTAATTTCA 59.525 36.000 9.19 0.00 35.94 2.69
25 26 6.015856 TCCAGCGAACAAGGAATTAATTTCAA 60.016 34.615 9.19 0.00 35.94 2.69
26 27 6.089417 CCAGCGAACAAGGAATTAATTTCAAC 59.911 38.462 9.19 0.00 35.94 3.18
27 28 5.856455 AGCGAACAAGGAATTAATTTCAACG 59.144 36.000 9.19 7.55 35.94 4.10
28 29 5.060446 GCGAACAAGGAATTAATTTCAACGG 59.940 40.000 9.19 0.00 35.94 4.44
29 30 5.060446 CGAACAAGGAATTAATTTCAACGGC 59.940 40.000 9.19 0.00 35.94 5.68
30 31 4.481463 ACAAGGAATTAATTTCAACGGCG 58.519 39.130 4.80 4.80 35.94 6.46
31 32 3.775661 AGGAATTAATTTCAACGGCGG 57.224 42.857 13.24 0.00 35.94 6.13
32 33 3.086282 AGGAATTAATTTCAACGGCGGT 58.914 40.909 13.24 0.00 35.94 5.68
33 34 4.263435 AGGAATTAATTTCAACGGCGGTA 58.737 39.130 13.24 0.00 35.94 4.02
34 35 4.701171 AGGAATTAATTTCAACGGCGGTAA 59.299 37.500 13.24 0.00 35.94 2.85
35 36 5.358725 AGGAATTAATTTCAACGGCGGTAAT 59.641 36.000 13.24 0.00 35.94 1.89
36 37 6.543100 AGGAATTAATTTCAACGGCGGTAATA 59.457 34.615 13.24 0.00 35.94 0.98
37 38 7.067251 AGGAATTAATTTCAACGGCGGTAATAA 59.933 33.333 13.24 0.00 35.94 1.40
38 39 7.166307 GGAATTAATTTCAACGGCGGTAATAAC 59.834 37.037 13.24 0.00 35.94 1.89
39 40 4.359971 AATTTCAACGGCGGTAATAACC 57.640 40.909 13.24 0.00 42.95 2.85
55 56 3.010144 CCAGGTGCTGGCCCTAAT 58.990 61.111 0.00 0.00 45.13 1.73
56 57 1.307647 CCAGGTGCTGGCCCTAATT 59.692 57.895 0.00 0.00 45.13 1.40
57 58 1.039233 CCAGGTGCTGGCCCTAATTG 61.039 60.000 0.00 0.00 45.13 2.32
58 59 0.034186 CAGGTGCTGGCCCTAATTGA 60.034 55.000 0.00 0.00 0.00 2.57
59 60 0.929244 AGGTGCTGGCCCTAATTGAT 59.071 50.000 0.00 0.00 0.00 2.57
60 61 2.135189 AGGTGCTGGCCCTAATTGATA 58.865 47.619 0.00 0.00 0.00 2.15
61 62 2.513738 AGGTGCTGGCCCTAATTGATAA 59.486 45.455 0.00 0.00 0.00 1.75
62 63 2.623416 GGTGCTGGCCCTAATTGATAAC 59.377 50.000 0.00 0.00 0.00 1.89
63 64 3.287222 GTGCTGGCCCTAATTGATAACA 58.713 45.455 0.00 0.00 0.00 2.41
64 65 3.316308 GTGCTGGCCCTAATTGATAACAG 59.684 47.826 0.00 0.00 0.00 3.16
65 66 2.887152 GCTGGCCCTAATTGATAACAGG 59.113 50.000 0.00 0.00 0.00 4.00
66 67 2.887152 CTGGCCCTAATTGATAACAGGC 59.113 50.000 0.00 0.00 38.21 4.85
67 68 2.243478 TGGCCCTAATTGATAACAGGCA 59.757 45.455 0.00 0.00 40.75 4.75
68 69 3.117169 TGGCCCTAATTGATAACAGGCAT 60.117 43.478 0.00 0.00 40.75 4.40
69 70 3.507622 GGCCCTAATTGATAACAGGCATC 59.492 47.826 0.00 0.00 40.75 3.91
70 71 3.189287 GCCCTAATTGATAACAGGCATCG 59.811 47.826 0.00 0.00 38.79 3.84
71 72 3.189287 CCCTAATTGATAACAGGCATCGC 59.811 47.826 0.00 0.00 0.00 4.58
72 73 4.067896 CCTAATTGATAACAGGCATCGCT 58.932 43.478 0.00 0.00 0.00 4.93
73 74 4.153117 CCTAATTGATAACAGGCATCGCTC 59.847 45.833 0.00 0.00 0.00 5.03
74 75 2.988010 TTGATAACAGGCATCGCTCT 57.012 45.000 0.00 0.00 0.00 4.09
75 76 2.988010 TGATAACAGGCATCGCTCTT 57.012 45.000 0.00 0.00 0.00 2.85
76 77 2.826428 TGATAACAGGCATCGCTCTTC 58.174 47.619 0.00 0.00 0.00 2.87
77 78 2.139118 GATAACAGGCATCGCTCTTCC 58.861 52.381 0.00 0.00 0.00 3.46
78 79 1.195115 TAACAGGCATCGCTCTTCCT 58.805 50.000 0.00 0.00 0.00 3.36
89 90 1.661112 CGCTCTTCCTTTTCTTAGGCG 59.339 52.381 0.00 0.00 35.15 5.52
121 122 1.147824 CGAGGGCCATGATCTTGCT 59.852 57.895 6.18 0.00 0.00 3.91
122 123 0.394192 CGAGGGCCATGATCTTGCTA 59.606 55.000 6.18 0.00 0.00 3.49
164 165 3.044305 GCTGCCACTGACCACGTC 61.044 66.667 0.00 0.00 0.00 4.34
175 176 1.838568 GACCACGTCGCCAAACTTCC 61.839 60.000 0.00 0.00 0.00 3.46
179 180 3.733960 GTCGCCAAACTTCCCGCC 61.734 66.667 0.00 0.00 0.00 6.13
206 207 0.613777 AATGGACAGGAAGGTCGACC 59.386 55.000 27.67 27.67 38.70 4.79
220 221 0.389817 TCGACCTTGCCTCGATGTTG 60.390 55.000 0.00 0.00 35.26 3.33
221 222 0.670546 CGACCTTGCCTCGATGTTGT 60.671 55.000 0.00 0.00 32.65 3.32
222 223 1.403647 CGACCTTGCCTCGATGTTGTA 60.404 52.381 0.00 0.00 32.65 2.41
223 224 2.738643 CGACCTTGCCTCGATGTTGTAT 60.739 50.000 0.00 0.00 32.65 2.29
224 225 3.490249 CGACCTTGCCTCGATGTTGTATA 60.490 47.826 0.00 0.00 32.65 1.47
225 226 4.632153 GACCTTGCCTCGATGTTGTATAT 58.368 43.478 0.00 0.00 0.00 0.86
229 230 6.166279 CCTTGCCTCGATGTTGTATATATGT 58.834 40.000 0.00 0.00 0.00 2.29
235 236 6.183360 CCTCGATGTTGTATATATGTTTCGGC 60.183 42.308 0.00 0.00 0.00 5.54
236 237 5.636121 TCGATGTTGTATATATGTTTCGGCC 59.364 40.000 0.00 0.00 0.00 6.13
241 242 6.203915 TGTTGTATATATGTTTCGGCCACATC 59.796 38.462 10.29 0.00 36.28 3.06
269 272 5.009854 AGATTTCCAATAAAATGGCGTGG 57.990 39.130 0.00 0.00 40.46 4.94
293 296 6.310224 GGCATAATCAACAGCAAAATAAACGT 59.690 34.615 0.00 0.00 0.00 3.99
310 313 4.921470 AACGTCATTCACTTATTGTCCG 57.079 40.909 0.00 0.00 0.00 4.79
320 323 7.731882 TTCACTTATTGTCCGACAAACATTA 57.268 32.000 17.64 3.39 41.96 1.90
321 324 7.124347 TCACTTATTGTCCGACAAACATTAC 57.876 36.000 17.64 0.00 41.96 1.89
332 335 7.064253 GTCCGACAAACATTACTTGCTAACTAT 59.936 37.037 0.00 0.00 0.00 2.12
333 336 8.252417 TCCGACAAACATTACTTGCTAACTATA 58.748 33.333 0.00 0.00 0.00 1.31
334 337 8.540492 CCGACAAACATTACTTGCTAACTATAG 58.460 37.037 0.00 0.00 0.00 1.31
335 338 9.084164 CGACAAACATTACTTGCTAACTATAGT 57.916 33.333 0.00 0.00 0.00 2.12
361 364 2.351706 TTTTGCGGGTAAACTCCTGT 57.648 45.000 0.00 0.00 36.33 4.00
373 376 7.224167 CGGGTAAACTCCTGTATTACTCAAATC 59.776 40.741 0.00 0.00 31.00 2.17
381 384 8.862325 TCCTGTATTACTCAAATCACATTGTT 57.138 30.769 0.00 0.00 0.00 2.83
382 385 8.946085 TCCTGTATTACTCAAATCACATTGTTC 58.054 33.333 0.00 0.00 0.00 3.18
384 387 8.317891 TGTATTACTCAAATCACATTGTTCGT 57.682 30.769 0.00 0.00 0.00 3.85
421 424 4.688413 GCAAGCTCTAAAGAATCTATCGGG 59.312 45.833 0.00 0.00 0.00 5.14
422 425 4.529109 AGCTCTAAAGAATCTATCGGGC 57.471 45.455 0.00 0.00 0.00 6.13
434 437 1.140852 CTATCGGGCCAGAACCAATCA 59.859 52.381 10.42 0.00 0.00 2.57
435 438 0.394352 ATCGGGCCAGAACCAATCAC 60.394 55.000 10.42 0.00 0.00 3.06
436 439 1.303236 CGGGCCAGAACCAATCACA 60.303 57.895 4.39 0.00 0.00 3.58
442 445 2.421424 GCCAGAACCAATCACAGTCATC 59.579 50.000 0.00 0.00 0.00 2.92
446 449 3.748048 AGAACCAATCACAGTCATCGTTG 59.252 43.478 0.00 0.00 0.00 4.10
456 459 1.478510 AGTCATCGTTGTGCCCTCTAG 59.521 52.381 0.00 0.00 0.00 2.43
477 480 8.012957 TCTAGTCTAGCAAATTTAGCTAAGCT 57.987 34.615 18.55 18.55 43.39 3.74
478 481 9.132923 TCTAGTCTAGCAAATTTAGCTAAGCTA 57.867 33.333 18.74 18.74 43.39 3.32
509 512 9.921637 TCCAACCTTATTTTGATTGTGATTTAC 57.078 29.630 0.00 0.00 0.00 2.01
538 541 2.254459 CACAGGAATCACGAAGAGACG 58.746 52.381 0.00 0.00 39.31 4.18
551 554 3.181489 CGAAGAGACGTAAGGTGCCTAAT 60.181 47.826 0.00 0.00 46.39 1.73
552 555 4.361420 GAAGAGACGTAAGGTGCCTAATC 58.639 47.826 0.00 0.00 46.39 1.75
606 609 3.902881 AGATCCGAAGCTTGAATCAGT 57.097 42.857 2.10 0.00 0.00 3.41
612 615 3.473367 CGAAGCTTGAATCAGTTTGACG 58.527 45.455 2.10 0.00 0.00 4.35
617 620 2.093306 TGAATCAGTTTGACGGCGAT 57.907 45.000 16.62 0.00 0.00 4.58
631 634 1.740380 CGGCGATGACAGAGTCCATTT 60.740 52.381 0.00 0.00 0.00 2.32
660 663 1.423584 TTGGCAAGTCACTCCTCTGA 58.576 50.000 0.00 0.00 0.00 3.27
663 666 3.173151 TGGCAAGTCACTCCTCTGAATA 58.827 45.455 0.00 0.00 0.00 1.75
674 677 5.350914 CACTCCTCTGAATAGCAAAAGACAG 59.649 44.000 0.00 0.00 0.00 3.51
675 678 5.012561 ACTCCTCTGAATAGCAAAAGACAGT 59.987 40.000 0.00 0.00 0.00 3.55
676 679 5.482908 TCCTCTGAATAGCAAAAGACAGTC 58.517 41.667 0.00 0.00 0.00 3.51
698 701 2.028748 GTCCTTCCATGCAAGCACAAAT 60.029 45.455 0.00 0.00 0.00 2.32
703 706 3.655486 TCCATGCAAGCACAAATTTCAG 58.345 40.909 0.00 0.00 0.00 3.02
707 710 3.533547 TGCAAGCACAAATTTCAGCTTT 58.466 36.364 18.94 6.93 44.22 3.51
718 721 4.790765 ATTTCAGCTTTAAGTGCTTCCC 57.209 40.909 2.81 0.00 38.92 3.97
719 722 2.949177 TCAGCTTTAAGTGCTTCCCA 57.051 45.000 2.81 0.00 38.92 4.37
743 746 3.562567 AGAGAAGAGTTGTCTACACGC 57.437 47.619 0.00 0.00 30.59 5.34
775 778 1.604278 TGTGACCTCTATCATCTCGCG 59.396 52.381 0.00 0.00 0.00 5.87
779 782 0.315251 CCTCTATCATCTCGCGGCAA 59.685 55.000 6.13 0.00 0.00 4.52
781 784 0.032130 TCTATCATCTCGCGGCAACC 59.968 55.000 6.13 0.00 0.00 3.77
798 801 2.355986 CCGTACCAGGCTACCAGCA 61.356 63.158 0.00 0.00 44.75 4.41
820 823 2.513204 CCGTGCCATCCTCTGCAG 60.513 66.667 7.63 7.63 38.34 4.41
847 850 3.605634 CCATCGGTATTCAGTTTCACCA 58.394 45.455 0.00 0.00 0.00 4.17
848 851 4.199310 CCATCGGTATTCAGTTTCACCAT 58.801 43.478 0.00 0.00 0.00 3.55
849 852 4.273480 CCATCGGTATTCAGTTTCACCATC 59.727 45.833 0.00 0.00 0.00 3.51
850 853 3.869065 TCGGTATTCAGTTTCACCATCC 58.131 45.455 0.00 0.00 0.00 3.51
851 854 3.517901 TCGGTATTCAGTTTCACCATCCT 59.482 43.478 0.00 0.00 0.00 3.24
852 855 3.623060 CGGTATTCAGTTTCACCATCCTG 59.377 47.826 0.00 0.00 0.00 3.86
853 856 3.947834 GGTATTCAGTTTCACCATCCTGG 59.052 47.826 0.00 0.00 45.02 4.45
854 857 1.909700 TTCAGTTTCACCATCCTGGC 58.090 50.000 0.00 0.00 42.67 4.85
855 858 0.321564 TCAGTTTCACCATCCTGGCG 60.322 55.000 0.00 0.00 42.67 5.69
856 859 0.606401 CAGTTTCACCATCCTGGCGT 60.606 55.000 0.00 0.00 42.67 5.68
857 860 0.981183 AGTTTCACCATCCTGGCGTA 59.019 50.000 0.00 0.00 42.67 4.42
862 865 1.411246 TCACCATCCTGGCGTATACAC 59.589 52.381 3.32 0.00 42.67 2.90
866 869 3.067106 CCATCCTGGCGTATACACATTC 58.933 50.000 3.32 0.00 0.00 2.67
905 908 2.078392 CATGCATGCATCCATACGCTA 58.922 47.619 30.07 0.00 33.90 4.26
1014 1034 3.585732 ACCCACCCCTATATAAACCATCG 59.414 47.826 0.00 0.00 0.00 3.84
1020 1040 5.480772 ACCCCTATATAAACCATCGTCTCAG 59.519 44.000 0.00 0.00 0.00 3.35
1065 1085 1.138883 ATCGACCGATCACCACACG 59.861 57.895 0.00 0.00 0.00 4.49
1066 1086 1.592400 ATCGACCGATCACCACACGT 61.592 55.000 0.00 0.00 0.00 4.49
1067 1087 1.800315 CGACCGATCACCACACGTC 60.800 63.158 0.00 0.00 0.00 4.34
1068 1088 1.445582 GACCGATCACCACACGTCC 60.446 63.158 0.00 0.00 0.00 4.79
1069 1089 2.149803 GACCGATCACCACACGTCCA 62.150 60.000 0.00 0.00 0.00 4.02
1099 1119 1.300963 CAGCATGGCTACCACCAGT 59.699 57.895 0.00 0.00 44.71 4.00
1100 1120 0.745845 CAGCATGGCTACCACCAGTC 60.746 60.000 0.00 0.00 44.71 3.51
1101 1121 1.200760 AGCATGGCTACCACCAGTCA 61.201 55.000 0.00 0.00 44.71 3.41
1501 1539 0.767060 AAAACACCGAGACCTCCCCT 60.767 55.000 0.00 0.00 0.00 4.79
1507 1545 1.102222 CCGAGACCTCCCCTTAGACG 61.102 65.000 0.00 0.00 0.00 4.18
1508 1546 0.394080 CGAGACCTCCCCTTAGACGT 60.394 60.000 0.00 0.00 0.00 4.34
1509 1547 1.134280 CGAGACCTCCCCTTAGACGTA 60.134 57.143 0.00 0.00 0.00 3.57
1510 1548 2.296792 GAGACCTCCCCTTAGACGTAC 58.703 57.143 0.00 0.00 0.00 3.67
1551 1593 4.472496 TGCATGATGCCAGTAATATGGTT 58.528 39.130 15.70 0.00 44.23 3.67
1592 1637 0.246635 GCCGCGTATATCATGGAGGT 59.753 55.000 4.92 0.00 0.00 3.85
1593 1638 1.475280 GCCGCGTATATCATGGAGGTA 59.525 52.381 4.92 0.00 0.00 3.08
1756 1801 7.325338 CCACGGTGATTGTACTTATACTATTCG 59.675 40.741 10.28 0.00 32.00 3.34
1955 2086 9.499479 TTTATAAGTGTTTCCCGTGTTACATTA 57.501 29.630 0.00 0.00 0.00 1.90
1968 2099 8.666573 CCCGTGTTACATTATATTTTACACACA 58.333 33.333 0.00 0.00 35.39 3.72
1992 2123 2.910199 TCCTCAATTGAATCTGGCTCG 58.090 47.619 9.88 0.00 0.00 5.03
2019 2150 7.994911 ACCTATCAATTTGTGCATCTTATCTCA 59.005 33.333 0.00 0.00 0.00 3.27
2024 2155 7.490079 TCAATTTGTGCATCTTATCTCATTTGC 59.510 33.333 0.00 0.00 0.00 3.68
2060 2191 2.981805 CCAAAACATCTCACATGCAACG 59.018 45.455 0.00 0.00 0.00 4.10
2102 2233 5.003804 AGATTGTAAACCACATGTCCTCAC 58.996 41.667 0.00 0.00 36.90 3.51
2111 2242 3.935203 CCACATGTCCTCACTGTATGAAC 59.065 47.826 0.00 0.00 36.69 3.18
2121 2252 7.819900 GTCCTCACTGTATGAACTATGAAACTT 59.180 37.037 0.00 0.00 36.69 2.66
2136 2267 5.241403 TGAAACTTAAGGAGATGGAGCAA 57.759 39.130 7.53 0.00 0.00 3.91
2138 2269 6.248433 TGAAACTTAAGGAGATGGAGCAAAT 58.752 36.000 7.53 0.00 0.00 2.32
2145 2276 6.705863 AAGGAGATGGAGCAAATGAAATAC 57.294 37.500 0.00 0.00 0.00 1.89
2146 2277 6.011122 AGGAGATGGAGCAAATGAAATACT 57.989 37.500 0.00 0.00 0.00 2.12
2147 2278 6.060788 AGGAGATGGAGCAAATGAAATACTC 58.939 40.000 0.00 0.00 0.00 2.59
2149 2280 5.136105 AGATGGAGCAAATGAAATACTCCC 58.864 41.667 4.98 0.00 45.22 4.30
2150 2281 4.591321 TGGAGCAAATGAAATACTCCCT 57.409 40.909 4.98 0.00 45.22 4.20
2151 2282 4.526970 TGGAGCAAATGAAATACTCCCTC 58.473 43.478 4.98 0.00 45.22 4.30
2152 2283 4.228210 TGGAGCAAATGAAATACTCCCTCT 59.772 41.667 4.98 0.00 45.22 3.69
2153 2284 4.578105 GGAGCAAATGAAATACTCCCTCTG 59.422 45.833 0.00 0.00 40.91 3.35
2154 2285 5.184892 AGCAAATGAAATACTCCCTCTGT 57.815 39.130 0.00 0.00 0.00 3.41
2155 2286 5.574188 AGCAAATGAAATACTCCCTCTGTT 58.426 37.500 0.00 0.00 0.00 3.16
2156 2287 5.649831 AGCAAATGAAATACTCCCTCTGTTC 59.350 40.000 0.00 0.00 0.00 3.18
2157 2288 5.415701 GCAAATGAAATACTCCCTCTGTTCA 59.584 40.000 0.00 0.00 0.00 3.18
2158 2289 6.623767 GCAAATGAAATACTCCCTCTGTTCAC 60.624 42.308 0.00 0.00 0.00 3.18
2159 2290 6.380079 AATGAAATACTCCCTCTGTTCACT 57.620 37.500 0.00 0.00 0.00 3.41
2160 2291 5.825593 TGAAATACTCCCTCTGTTCACTT 57.174 39.130 0.00 0.00 0.00 3.16
2161 2292 6.187727 TGAAATACTCCCTCTGTTCACTTT 57.812 37.500 0.00 0.00 0.00 2.66
2162 2293 6.601332 TGAAATACTCCCTCTGTTCACTTTT 58.399 36.000 0.00 0.00 0.00 2.27
2163 2294 7.741785 TGAAATACTCCCTCTGTTCACTTTTA 58.258 34.615 0.00 0.00 0.00 1.52
2164 2295 8.383175 TGAAATACTCCCTCTGTTCACTTTTAT 58.617 33.333 0.00 0.00 0.00 1.40
2165 2296 9.886132 GAAATACTCCCTCTGTTCACTTTTATA 57.114 33.333 0.00 0.00 0.00 0.98
2170 2301 8.265764 ACTCCCTCTGTTCACTTTTATAATACC 58.734 37.037 0.00 0.00 0.00 2.73
2171 2302 8.388656 TCCCTCTGTTCACTTTTATAATACCT 57.611 34.615 0.00 0.00 0.00 3.08
2172 2303 8.832735 TCCCTCTGTTCACTTTTATAATACCTT 58.167 33.333 0.00 0.00 0.00 3.50
2173 2304 8.893727 CCCTCTGTTCACTTTTATAATACCTTG 58.106 37.037 0.00 0.00 0.00 3.61
2174 2305 9.667107 CCTCTGTTCACTTTTATAATACCTTGA 57.333 33.333 0.00 0.00 0.00 3.02
2189 2320 9.739276 ATAATACCTTGAAGACATTTCAGACAA 57.261 29.630 0.00 0.00 0.00 3.18
2190 2321 8.641498 AATACCTTGAAGACATTTCAGACAAT 57.359 30.769 0.00 0.00 0.00 2.71
2191 2322 9.739276 AATACCTTGAAGACATTTCAGACAATA 57.261 29.630 0.00 0.00 0.00 1.90
2192 2323 9.911788 ATACCTTGAAGACATTTCAGACAATAT 57.088 29.630 0.00 0.00 0.00 1.28
2193 2324 8.048534 ACCTTGAAGACATTTCAGACAATATG 57.951 34.615 0.00 0.00 0.00 1.78
2194 2325 6.971184 CCTTGAAGACATTTCAGACAATATGC 59.029 38.462 0.00 0.00 0.00 3.14
2195 2326 7.362315 CCTTGAAGACATTTCAGACAATATGCA 60.362 37.037 0.00 0.00 0.00 3.96
2196 2327 7.451501 TGAAGACATTTCAGACAATATGCAA 57.548 32.000 0.00 0.00 0.00 4.08
2197 2328 7.884257 TGAAGACATTTCAGACAATATGCAAA 58.116 30.769 0.00 0.00 0.00 3.68
2198 2329 8.358895 TGAAGACATTTCAGACAATATGCAAAA 58.641 29.630 0.00 0.00 0.00 2.44
2199 2330 9.362539 GAAGACATTTCAGACAATATGCAAAAT 57.637 29.630 0.00 0.00 0.00 1.82
2202 2333 9.793252 GACATTTCAGACAATATGCAAAATAGT 57.207 29.630 0.00 0.00 0.00 2.12
2203 2334 9.793252 ACATTTCAGACAATATGCAAAATAGTC 57.207 29.630 0.00 0.00 0.00 2.59
2204 2335 9.241317 CATTTCAGACAATATGCAAAATAGTCC 57.759 33.333 0.00 0.00 0.00 3.85
2205 2336 7.936496 TTCAGACAATATGCAAAATAGTCCA 57.064 32.000 0.00 0.00 0.00 4.02
2206 2337 8.523915 TTCAGACAATATGCAAAATAGTCCAT 57.476 30.769 0.00 0.00 0.00 3.41
2207 2338 8.523915 TCAGACAATATGCAAAATAGTCCATT 57.476 30.769 0.00 0.00 0.00 3.16
2208 2339 8.970020 TCAGACAATATGCAAAATAGTCCATTT 58.030 29.630 0.00 0.00 38.54 2.32
2209 2340 9.590451 CAGACAATATGCAAAATAGTCCATTTT 57.410 29.630 0.00 0.00 45.72 1.82
2220 2351 8.463930 AAAATAGTCCATTTTGAGTTGTCTGA 57.536 30.769 0.00 0.00 43.65 3.27
2221 2352 8.463930 AAATAGTCCATTTTGAGTTGTCTGAA 57.536 30.769 0.00 0.00 32.74 3.02
2222 2353 8.463930 AATAGTCCATTTTGAGTTGTCTGAAA 57.536 30.769 0.00 0.00 0.00 2.69
2223 2354 6.136541 AGTCCATTTTGAGTTGTCTGAAAC 57.863 37.500 0.00 0.00 0.00 2.78
2224 2355 4.970003 GTCCATTTTGAGTTGTCTGAAACG 59.030 41.667 0.00 0.00 35.13 3.60
2225 2356 4.878971 TCCATTTTGAGTTGTCTGAAACGA 59.121 37.500 0.00 0.00 35.13 3.85
2226 2357 4.970003 CCATTTTGAGTTGTCTGAAACGAC 59.030 41.667 0.00 0.00 41.93 4.34
2234 2365 5.459110 GTTGTCTGAAACGACTTACAACA 57.541 39.130 10.37 0.00 43.72 3.33
2235 2366 5.490213 GTTGTCTGAAACGACTTACAACAG 58.510 41.667 10.37 0.00 43.72 3.16
2236 2367 4.751060 TGTCTGAAACGACTTACAACAGT 58.249 39.130 0.00 0.00 35.00 3.55
2237 2368 4.565166 TGTCTGAAACGACTTACAACAGTG 59.435 41.667 0.00 0.00 35.00 3.66
2238 2369 4.802039 GTCTGAAACGACTTACAACAGTGA 59.198 41.667 0.00 0.00 0.00 3.41
2239 2370 5.290158 GTCTGAAACGACTTACAACAGTGAA 59.710 40.000 0.00 0.00 0.00 3.18
2240 2371 5.290158 TCTGAAACGACTTACAACAGTGAAC 59.710 40.000 0.00 0.00 0.00 3.18
2241 2372 4.031991 TGAAACGACTTACAACAGTGAACG 59.968 41.667 0.00 0.00 0.00 3.95
2242 2373 2.466846 ACGACTTACAACAGTGAACGG 58.533 47.619 0.00 0.00 0.00 4.44
2243 2374 2.099592 ACGACTTACAACAGTGAACGGA 59.900 45.455 0.00 0.00 0.00 4.69
2244 2375 2.724690 CGACTTACAACAGTGAACGGAG 59.275 50.000 0.00 0.00 0.00 4.63
2245 2376 3.057734 GACTTACAACAGTGAACGGAGG 58.942 50.000 0.00 0.00 0.00 4.30
2246 2377 2.224209 ACTTACAACAGTGAACGGAGGG 60.224 50.000 0.00 0.00 0.00 4.30
2247 2378 1.707106 TACAACAGTGAACGGAGGGA 58.293 50.000 0.00 0.00 0.00 4.20
2248 2379 0.393077 ACAACAGTGAACGGAGGGAG 59.607 55.000 0.00 0.00 0.00 4.30
2249 2380 0.393077 CAACAGTGAACGGAGGGAGT 59.607 55.000 0.00 0.00 0.00 3.85
2250 2381 1.616865 CAACAGTGAACGGAGGGAGTA 59.383 52.381 0.00 0.00 0.00 2.59
2251 2382 2.233305 ACAGTGAACGGAGGGAGTAT 57.767 50.000 0.00 0.00 0.00 2.12
2252 2383 3.377253 ACAGTGAACGGAGGGAGTATA 57.623 47.619 0.00 0.00 0.00 1.47
2253 2384 3.705051 ACAGTGAACGGAGGGAGTATAA 58.295 45.455 0.00 0.00 0.00 0.98
2254 2385 3.446516 ACAGTGAACGGAGGGAGTATAAC 59.553 47.826 0.00 0.00 0.00 1.89
2255 2386 3.700038 CAGTGAACGGAGGGAGTATAACT 59.300 47.826 0.00 0.00 0.00 2.24
2263 2394 8.922931 AACGGAGGGAGTATAACTTTTTAAAA 57.077 30.769 0.00 0.00 0.00 1.52
2328 2459 1.467678 CCTCGTGGATGGGCTCCTAG 61.468 65.000 0.00 0.00 45.21 3.02
2348 2479 3.730761 CAGTGGCCAGCGAGCAAC 61.731 66.667 5.11 0.57 36.91 4.17
2350 2481 3.426568 GTGGCCAGCGAGCAACTC 61.427 66.667 5.11 0.00 33.60 3.01
2352 2483 2.282783 TGGCCAGCGAGCAACTCTA 61.283 57.895 0.00 0.00 0.00 2.43
2362 2493 2.038659 GAGCAACTCTATCTCCTGGCT 58.961 52.381 0.00 0.00 0.00 4.75
2370 2501 1.043116 TATCTCCTGGCTGACACGGG 61.043 60.000 0.00 0.00 35.63 5.28
2377 2508 2.432628 GCTGACACGGGTTCGAGG 60.433 66.667 0.00 0.00 40.11 4.63
2381 2512 2.522436 ACACGGGTTCGAGGGTCA 60.522 61.111 0.00 0.00 40.11 4.02
2385 2516 2.943978 CGGGTTCGAGGGTCAGCTT 61.944 63.158 0.00 0.00 39.00 3.74
2386 2517 1.376037 GGGTTCGAGGGTCAGCTTG 60.376 63.158 0.00 0.00 0.00 4.01
2387 2518 1.376037 GGTTCGAGGGTCAGCTTGG 60.376 63.158 0.00 0.00 0.00 3.61
2388 2519 1.376037 GTTCGAGGGTCAGCTTGGG 60.376 63.158 0.00 0.00 0.00 4.12
2389 2520 1.841556 TTCGAGGGTCAGCTTGGGT 60.842 57.895 0.00 0.00 0.00 4.51
2390 2521 2.046892 CGAGGGTCAGCTTGGGTG 60.047 66.667 0.00 0.00 0.00 4.61
2394 2525 1.152756 GGGTCAGCTTGGGTGTTGT 60.153 57.895 0.00 0.00 32.43 3.32
2418 2549 7.939039 TGTTGTCTCACATTCTCCTCTTAATTT 59.061 33.333 0.00 0.00 0.00 1.82
2432 2563 8.741603 TCCTCTTAATTTAAAAATCGTAGGGG 57.258 34.615 0.00 0.00 0.00 4.79
2435 2566 7.992008 TCTTAATTTAAAAATCGTAGGGGCTG 58.008 34.615 0.00 0.00 0.00 4.85
2450 2581 3.036429 GCTGCTCCCCCTACTGGTG 62.036 68.421 0.00 0.00 0.00 4.17
2453 2584 0.117541 TGCTCCCCCTACTGGTGTAA 59.882 55.000 0.00 0.00 0.00 2.41
2455 2586 1.844497 GCTCCCCCTACTGGTGTAATT 59.156 52.381 0.00 0.00 0.00 1.40
2486 2618 2.502142 TAGAGCCTCGTGACCAGTAA 57.498 50.000 0.00 0.00 0.00 2.24
2496 2628 5.292101 CCTCGTGACCAGTAAGAATTGAATC 59.708 44.000 0.00 0.00 0.00 2.52
2570 2702 9.008965 TCTTCTTTATACAATTACAAAGCTGCA 57.991 29.630 1.02 0.00 0.00 4.41
2572 2704 8.964420 TCTTTATACAATTACAAAGCTGCAAC 57.036 30.769 1.02 0.00 0.00 4.17
2578 2710 1.394618 TACAAAGCTGCAACCGGTTT 58.605 45.000 19.55 0.00 32.84 3.27
2579 2711 0.534873 ACAAAGCTGCAACCGGTTTT 59.465 45.000 19.55 6.19 31.86 2.43
2586 2718 3.127589 GCTGCAACCGGTTTTGTAAAAT 58.872 40.909 19.55 0.00 0.00 1.82
2589 2721 5.470845 TGCAACCGGTTTTGTAAAATTTG 57.529 34.783 19.55 3.29 0.00 2.32
2627 2759 9.655769 GTTCAATGACATCACATCATATAACAC 57.344 33.333 0.00 0.00 35.72 3.32
2720 2854 3.192001 TCACAAGATCATCAAAGCAAGGC 59.808 43.478 0.00 0.00 0.00 4.35
2724 2858 3.022406 AGATCATCAAAGCAAGGCCTTC 58.978 45.455 17.29 10.91 0.00 3.46
2797 2931 2.092538 CCCAATTGAGATGCTCCTCACT 60.093 50.000 7.12 1.55 42.33 3.41
2800 2934 0.907486 TTGAGATGCTCCTCACTGGG 59.093 55.000 7.89 0.00 42.33 4.45
2809 2944 2.290323 GCTCCTCACTGGGTTTGTGTAT 60.290 50.000 0.00 0.00 36.83 2.29
2815 2950 2.739913 CACTGGGTTTGTGTATACGGTG 59.260 50.000 0.00 0.00 0.00 4.94
2947 3092 2.843730 ACACCCCACATGTTCTAGCATA 59.156 45.455 0.00 0.00 0.00 3.14
2980 3126 4.618920 AAGTGGTCTAAAACATCTCGGT 57.381 40.909 0.00 0.00 0.00 4.69
2982 3128 5.326200 AGTGGTCTAAAACATCTCGGTAG 57.674 43.478 0.00 0.00 0.00 3.18
2991 3137 5.661056 AAACATCTCGGTAGTCTTGATCA 57.339 39.130 0.00 0.00 0.00 2.92
2992 3138 4.640789 ACATCTCGGTAGTCTTGATCAC 57.359 45.455 0.00 0.00 0.00 3.06
3001 3147 0.535335 GTCTTGATCACGGGCCACTA 59.465 55.000 4.39 0.00 0.00 2.74
3005 3151 0.980754 TGATCACGGGCCACTACCAT 60.981 55.000 4.39 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.856455 CGTTGAAATTAATTCCTTGTTCGCT 59.144 36.000 0.10 0.00 37.22 4.93
4 5 5.060446 CCGTTGAAATTAATTCCTTGTTCGC 59.940 40.000 0.10 0.00 37.22 4.70
5 6 5.060446 GCCGTTGAAATTAATTCCTTGTTCG 59.940 40.000 0.10 1.66 37.22 3.95
6 7 5.060446 CGCCGTTGAAATTAATTCCTTGTTC 59.940 40.000 0.10 0.00 37.22 3.18
7 8 4.920927 CGCCGTTGAAATTAATTCCTTGTT 59.079 37.500 0.10 0.00 37.22 2.83
8 9 4.481463 CGCCGTTGAAATTAATTCCTTGT 58.519 39.130 0.10 0.00 37.22 3.16
9 10 3.857093 CCGCCGTTGAAATTAATTCCTTG 59.143 43.478 0.10 0.00 37.22 3.61
10 11 3.508402 ACCGCCGTTGAAATTAATTCCTT 59.492 39.130 0.10 0.00 37.22 3.36
11 12 3.086282 ACCGCCGTTGAAATTAATTCCT 58.914 40.909 0.10 0.00 37.22 3.36
12 13 3.497297 ACCGCCGTTGAAATTAATTCC 57.503 42.857 0.10 0.00 37.22 3.01
13 14 7.166307 GGTTATTACCGCCGTTGAAATTAATTC 59.834 37.037 0.10 0.00 35.07 2.17
14 15 6.974048 GGTTATTACCGCCGTTGAAATTAATT 59.026 34.615 0.00 0.00 34.01 1.40
15 16 6.497437 GGTTATTACCGCCGTTGAAATTAAT 58.503 36.000 0.00 0.00 34.01 1.40
16 17 5.878133 GGTTATTACCGCCGTTGAAATTAA 58.122 37.500 0.00 0.00 34.01 1.40
17 18 5.482686 GGTTATTACCGCCGTTGAAATTA 57.517 39.130 0.00 0.00 34.01 1.40
18 19 4.359971 GGTTATTACCGCCGTTGAAATT 57.640 40.909 0.00 0.00 34.01 1.82
39 40 0.034186 TCAATTAGGGCCAGCACCTG 60.034 55.000 6.18 0.00 39.12 4.00
40 41 0.929244 ATCAATTAGGGCCAGCACCT 59.071 50.000 6.18 0.00 42.15 4.00
41 42 2.623416 GTTATCAATTAGGGCCAGCACC 59.377 50.000 6.18 0.00 0.00 5.01
42 43 3.287222 TGTTATCAATTAGGGCCAGCAC 58.713 45.455 6.18 0.00 0.00 4.40
43 44 3.554934 CTGTTATCAATTAGGGCCAGCA 58.445 45.455 6.18 0.00 0.00 4.41
44 45 2.887152 CCTGTTATCAATTAGGGCCAGC 59.113 50.000 6.18 0.00 0.00 4.85
45 46 2.887152 GCCTGTTATCAATTAGGGCCAG 59.113 50.000 6.18 0.00 32.86 4.85
46 47 2.243478 TGCCTGTTATCAATTAGGGCCA 59.757 45.455 6.18 0.00 37.55 5.36
47 48 2.944129 TGCCTGTTATCAATTAGGGCC 58.056 47.619 0.00 0.00 37.55 5.80
48 49 3.189287 CGATGCCTGTTATCAATTAGGGC 59.811 47.826 0.00 0.00 38.67 5.19
49 50 3.189287 GCGATGCCTGTTATCAATTAGGG 59.811 47.826 0.00 0.00 0.00 3.53
50 51 4.067896 AGCGATGCCTGTTATCAATTAGG 58.932 43.478 0.00 0.00 0.00 2.69
51 52 4.993584 AGAGCGATGCCTGTTATCAATTAG 59.006 41.667 0.00 0.00 0.00 1.73
52 53 4.960938 AGAGCGATGCCTGTTATCAATTA 58.039 39.130 0.00 0.00 0.00 1.40
53 54 3.813443 AGAGCGATGCCTGTTATCAATT 58.187 40.909 0.00 0.00 0.00 2.32
54 55 3.482156 AGAGCGATGCCTGTTATCAAT 57.518 42.857 0.00 0.00 0.00 2.57
55 56 2.988010 AGAGCGATGCCTGTTATCAA 57.012 45.000 0.00 0.00 0.00 2.57
56 57 2.483714 GGAAGAGCGATGCCTGTTATCA 60.484 50.000 0.00 0.00 0.00 2.15
57 58 2.139118 GGAAGAGCGATGCCTGTTATC 58.861 52.381 0.00 0.00 0.00 1.75
58 59 1.765314 AGGAAGAGCGATGCCTGTTAT 59.235 47.619 0.00 0.00 0.00 1.89
59 60 1.195115 AGGAAGAGCGATGCCTGTTA 58.805 50.000 0.00 0.00 0.00 2.41
60 61 0.326264 AAGGAAGAGCGATGCCTGTT 59.674 50.000 0.00 0.00 0.00 3.16
61 62 0.326264 AAAGGAAGAGCGATGCCTGT 59.674 50.000 0.00 0.00 0.00 4.00
62 63 1.399791 GAAAAGGAAGAGCGATGCCTG 59.600 52.381 0.00 0.00 0.00 4.85
63 64 1.280421 AGAAAAGGAAGAGCGATGCCT 59.720 47.619 0.00 0.00 0.00 4.75
64 65 1.743996 AGAAAAGGAAGAGCGATGCC 58.256 50.000 0.00 0.00 0.00 4.40
65 66 3.311048 CCTAAGAAAAGGAAGAGCGATGC 59.689 47.826 0.00 0.00 39.15 3.91
66 67 3.311048 GCCTAAGAAAAGGAAGAGCGATG 59.689 47.826 0.00 0.00 39.15 3.84
67 68 3.536570 GCCTAAGAAAAGGAAGAGCGAT 58.463 45.455 0.00 0.00 39.15 4.58
68 69 2.674177 CGCCTAAGAAAAGGAAGAGCGA 60.674 50.000 0.00 0.00 43.43 4.93
69 70 1.661112 CGCCTAAGAAAAGGAAGAGCG 59.339 52.381 0.00 0.00 39.15 5.03
70 71 2.973945 TCGCCTAAGAAAAGGAAGAGC 58.026 47.619 0.00 0.00 39.15 4.09
71 72 3.368236 CGTTCGCCTAAGAAAAGGAAGAG 59.632 47.826 0.00 0.00 39.15 2.85
72 73 3.323243 CGTTCGCCTAAGAAAAGGAAGA 58.677 45.455 0.00 0.00 39.15 2.87
73 74 2.159693 GCGTTCGCCTAAGAAAAGGAAG 60.160 50.000 5.87 0.00 39.15 3.46
74 75 1.802365 GCGTTCGCCTAAGAAAAGGAA 59.198 47.619 5.87 0.00 39.15 3.36
75 76 1.435577 GCGTTCGCCTAAGAAAAGGA 58.564 50.000 5.87 0.00 39.15 3.36
76 77 0.446616 GGCGTTCGCCTAAGAAAAGG 59.553 55.000 25.91 0.00 46.99 3.11
77 78 3.969795 GGCGTTCGCCTAAGAAAAG 57.030 52.632 25.91 0.00 46.99 2.27
89 90 3.110178 CTCGTGGGTTCGGCGTTC 61.110 66.667 6.85 0.75 0.00 3.95
103 104 0.394192 TAGCAAGATCATGGCCCTCG 59.606 55.000 0.00 0.00 0.00 4.63
206 207 7.658179 AACATATATACAACATCGAGGCAAG 57.342 36.000 0.00 0.00 0.00 4.01
220 221 6.426937 ACAAGATGTGGCCGAAACATATATAC 59.573 38.462 7.15 0.00 38.37 1.47
221 222 6.530120 ACAAGATGTGGCCGAAACATATATA 58.470 36.000 7.15 0.00 38.37 0.86
222 223 5.376625 ACAAGATGTGGCCGAAACATATAT 58.623 37.500 7.15 0.00 38.37 0.86
223 224 4.776349 ACAAGATGTGGCCGAAACATATA 58.224 39.130 7.15 0.00 38.37 0.86
224 225 3.620488 ACAAGATGTGGCCGAAACATAT 58.380 40.909 7.15 1.74 38.37 1.78
225 226 3.066291 ACAAGATGTGGCCGAAACATA 57.934 42.857 7.15 0.00 38.37 2.29
229 230 3.410631 TCTTACAAGATGTGGCCGAAA 57.589 42.857 0.00 0.00 0.00 3.46
241 242 7.759433 ACGCCATTTTATTGGAAATCTTACAAG 59.241 33.333 0.00 0.00 39.25 3.16
269 272 7.061673 TGACGTTTATTTTGCTGTTGATTATGC 59.938 33.333 0.00 0.00 0.00 3.14
293 296 5.760743 TGTTTGTCGGACAATAAGTGAATGA 59.239 36.000 22.97 2.68 38.00 2.57
349 352 8.880750 GTGATTTGAGTAATACAGGAGTTTACC 58.119 37.037 0.00 0.00 0.00 2.85
358 361 8.443160 ACGAACAATGTGATTTGAGTAATACAG 58.557 33.333 0.00 0.00 0.00 2.74
361 364 9.425577 TGTACGAACAATGTGATTTGAGTAATA 57.574 29.630 0.00 0.00 30.91 0.98
377 380 3.304391 GCCAAAGCTGATTGTACGAACAA 60.304 43.478 0.00 0.00 42.19 2.83
381 384 2.177394 TGCCAAAGCTGATTGTACGA 57.823 45.000 0.00 0.00 40.80 3.43
382 385 2.855180 CTTGCCAAAGCTGATTGTACG 58.145 47.619 0.00 0.00 40.80 3.67
405 408 4.873746 TCTGGCCCGATAGATTCTTTAG 57.126 45.455 0.00 0.00 39.76 1.85
421 424 1.896220 TGACTGTGATTGGTTCTGGC 58.104 50.000 0.00 0.00 0.00 4.85
422 425 2.674852 CGATGACTGTGATTGGTTCTGG 59.325 50.000 0.00 0.00 0.00 3.86
434 437 0.320771 GAGGGCACAACGATGACTGT 60.321 55.000 0.00 0.00 0.00 3.55
435 438 0.036952 AGAGGGCACAACGATGACTG 60.037 55.000 0.00 0.00 0.00 3.51
436 439 1.478510 CTAGAGGGCACAACGATGACT 59.521 52.381 0.00 0.00 0.00 3.41
442 445 1.202313 GCTAGACTAGAGGGCACAACG 60.202 57.143 13.91 0.00 0.00 4.10
446 449 3.828875 ATTTGCTAGACTAGAGGGCAC 57.171 47.619 13.91 0.00 32.47 5.01
478 481 9.699410 TCACAATCAAAATAAGGTTGGAGATAT 57.301 29.630 0.00 0.00 0.00 1.63
483 486 9.921637 GTAAATCACAATCAAAATAAGGTTGGA 57.078 29.630 0.00 0.00 0.00 3.53
484 487 9.703892 TGTAAATCACAATCAAAATAAGGTTGG 57.296 29.630 0.00 0.00 32.95 3.77
499 502 7.220740 TCCTGTGTTACTCATGTAAATCACAA 58.779 34.615 13.19 2.52 41.14 3.33
503 506 8.391106 GTGATTCCTGTGTTACTCATGTAAATC 58.609 37.037 0.00 0.00 39.96 2.17
508 511 4.021456 TCGTGATTCCTGTGTTACTCATGT 60.021 41.667 0.00 0.00 0.00 3.21
509 512 4.494484 TCGTGATTCCTGTGTTACTCATG 58.506 43.478 0.00 0.00 0.00 3.07
538 541 6.718522 AGTTAGAGAGATTAGGCACCTTAC 57.281 41.667 0.00 0.00 0.00 2.34
606 609 0.317160 ACTCTGTCATCGCCGTCAAA 59.683 50.000 0.00 0.00 0.00 2.69
612 615 1.936547 GAAATGGACTCTGTCATCGCC 59.063 52.381 0.07 0.00 33.68 5.54
617 620 9.166173 CAATTATAGTTGAAATGGACTCTGTCA 57.834 33.333 1.87 0.00 33.68 3.58
631 634 5.880332 GGAGTGACTTGCCAATTATAGTTGA 59.120 40.000 9.40 0.00 0.00 3.18
660 663 4.273148 AGGACGACTGTCTTTTGCTATT 57.727 40.909 6.21 0.00 44.83 1.73
663 666 2.484889 GAAGGACGACTGTCTTTTGCT 58.515 47.619 6.21 0.00 43.64 3.91
674 677 0.955428 TGCTTGCATGGAAGGACGAC 60.955 55.000 25.92 11.10 0.00 4.34
675 678 0.955428 GTGCTTGCATGGAAGGACGA 60.955 55.000 29.91 4.74 35.01 4.20
676 679 1.236616 TGTGCTTGCATGGAAGGACG 61.237 55.000 34.35 12.26 44.79 4.79
698 701 3.561143 TGGGAAGCACTTAAAGCTGAAA 58.439 40.909 3.11 0.00 42.53 2.69
703 706 1.247567 TGCTGGGAAGCACTTAAAGC 58.752 50.000 0.00 5.09 40.23 3.51
707 710 1.977854 TCTCTTGCTGGGAAGCACTTA 59.022 47.619 0.00 0.00 45.32 2.24
718 721 4.683781 GTGTAGACAACTCTTCTCTTGCTG 59.316 45.833 0.00 0.00 0.00 4.41
719 722 4.557695 CGTGTAGACAACTCTTCTCTTGCT 60.558 45.833 0.00 0.00 0.00 3.91
728 731 2.231529 ACTCAGCGTGTAGACAACTCT 58.768 47.619 0.00 0.00 0.00 3.24
775 778 1.449070 GTAGCCTGGTACGGTTGCC 60.449 63.158 0.00 0.00 0.00 4.52
779 782 2.356780 GCTGGTAGCCTGGTACGGT 61.357 63.158 0.00 0.00 34.48 4.83
781 784 1.153628 GTGCTGGTAGCCTGGTACG 60.154 63.158 0.00 0.00 41.51 3.67
782 785 1.221021 GGTGCTGGTAGCCTGGTAC 59.779 63.158 0.00 0.00 41.51 3.34
783 786 1.229368 TGGTGCTGGTAGCCTGGTA 60.229 57.895 0.00 0.00 41.51 3.25
784 787 2.529136 TGGTGCTGGTAGCCTGGT 60.529 61.111 0.00 0.00 41.51 4.00
785 788 2.270205 CTGGTGCTGGTAGCCTGG 59.730 66.667 0.00 0.00 41.51 4.45
786 789 2.437359 GCTGGTGCTGGTAGCCTG 60.437 66.667 0.00 0.00 41.51 4.85
798 801 4.101448 GAGGATGGCACGGCTGGT 62.101 66.667 0.00 0.00 0.00 4.00
820 823 3.753294 ACTGAATACCGATGGGTCATC 57.247 47.619 1.19 3.79 46.01 2.92
847 850 2.972713 AGGAATGTGTATACGCCAGGAT 59.027 45.455 13.71 0.00 0.00 3.24
848 851 2.394632 AGGAATGTGTATACGCCAGGA 58.605 47.619 13.71 0.00 0.00 3.86
849 852 2.910688 AGGAATGTGTATACGCCAGG 57.089 50.000 13.71 0.00 0.00 4.45
850 853 2.794910 CGAAGGAATGTGTATACGCCAG 59.205 50.000 13.71 0.00 0.00 4.85
851 854 2.166870 ACGAAGGAATGTGTATACGCCA 59.833 45.455 13.71 5.79 0.00 5.69
852 855 2.817901 ACGAAGGAATGTGTATACGCC 58.182 47.619 13.71 0.00 0.00 5.68
853 856 3.861113 TGAACGAAGGAATGTGTATACGC 59.139 43.478 9.55 9.55 0.00 4.42
854 857 4.860352 TGTGAACGAAGGAATGTGTATACG 59.140 41.667 0.00 0.00 0.00 3.06
855 858 5.636121 TGTGTGAACGAAGGAATGTGTATAC 59.364 40.000 0.00 0.00 0.00 1.47
856 859 5.785243 TGTGTGAACGAAGGAATGTGTATA 58.215 37.500 0.00 0.00 0.00 1.47
857 860 4.637276 TGTGTGAACGAAGGAATGTGTAT 58.363 39.130 0.00 0.00 0.00 2.29
862 865 5.353956 TGGAATATGTGTGAACGAAGGAATG 59.646 40.000 0.00 0.00 0.00 2.67
866 869 4.496341 GCATGGAATATGTGTGAACGAAGG 60.496 45.833 0.00 0.00 0.00 3.46
989 1002 5.132043 TGGTTTATATAGGGGTGGGTTTG 57.868 43.478 0.00 0.00 0.00 2.93
1014 1034 3.603144 AGCTGTTCACTGCTGAGAC 57.397 52.632 10.26 0.00 47.00 3.36
1064 1084 3.349006 GCTGCTGTGGTGTGGACG 61.349 66.667 0.00 0.00 0.00 4.79
1065 1085 2.203195 TGCTGCTGTGGTGTGGAC 60.203 61.111 0.00 0.00 0.00 4.02
1066 1086 2.111669 CTGCTGCTGTGGTGTGGA 59.888 61.111 0.00 0.00 0.00 4.02
1067 1087 3.667282 GCTGCTGCTGTGGTGTGG 61.667 66.667 8.53 0.00 36.03 4.17
1068 1088 2.265904 ATGCTGCTGCTGTGGTGTG 61.266 57.895 17.00 0.00 40.48 3.82
1069 1089 2.114625 ATGCTGCTGCTGTGGTGT 59.885 55.556 17.00 0.00 40.48 4.16
1099 1119 2.811514 GGCGATGAGGAGGGCATGA 61.812 63.158 0.00 0.00 0.00 3.07
1100 1120 2.281345 GGCGATGAGGAGGGCATG 60.281 66.667 0.00 0.00 0.00 4.06
1101 1121 3.564218 GGGCGATGAGGAGGGCAT 61.564 66.667 0.00 0.00 0.00 4.40
1202 1231 3.560278 CATTGGGTACGCCGTCGC 61.560 66.667 7.55 0.00 39.84 5.19
1209 1238 2.888534 CGTCCGCCATTGGGTACG 60.889 66.667 4.53 0.00 36.17 3.67
1211 1240 2.727392 CCTCGTCCGCCATTGGGTA 61.727 63.158 4.53 0.00 36.17 3.69
1501 1539 2.252747 CAATTGTCGGCGTACGTCTAA 58.747 47.619 18.90 10.57 44.69 2.10
1507 1545 0.248054 CATGGCAATTGTCGGCGTAC 60.248 55.000 6.85 4.58 0.00 3.67
1508 1546 1.987704 GCATGGCAATTGTCGGCGTA 61.988 55.000 6.85 0.00 0.00 4.42
1509 1547 2.876955 CATGGCAATTGTCGGCGT 59.123 55.556 6.85 0.00 0.00 5.68
1510 1548 2.580326 GCATGGCAATTGTCGGCG 60.580 61.111 10.21 0.00 0.00 6.46
1576 1621 4.647853 TGGGTATACCTCCATGATATACGC 59.352 45.833 21.25 17.17 41.53 4.42
1578 1623 9.830186 ATATCTGGGTATACCTCCATGATATAC 57.170 37.037 21.25 0.96 41.11 1.47
1593 1638 9.642343 TCGAGCACTATTTATATATCTGGGTAT 57.358 33.333 0.00 0.00 0.00 2.73
1782 1827 3.383546 ACATATTTGCACGCTTACACG 57.616 42.857 0.00 0.00 39.50 4.49
1968 2099 5.163581 CGAGCCAGATTCAATTGAGGATTTT 60.164 40.000 14.06 0.00 0.00 1.82
1992 2123 8.388484 AGATAAGATGCACAAATTGATAGGTC 57.612 34.615 0.00 0.00 0.00 3.85
2053 2184 1.296056 GGTTCACCTACGCGTTGCAT 61.296 55.000 20.78 3.06 0.00 3.96
2111 2242 6.586344 TGCTCCATCTCCTTAAGTTTCATAG 58.414 40.000 0.97 0.00 0.00 2.23
2121 2252 7.577303 AGTATTTCATTTGCTCCATCTCCTTA 58.423 34.615 0.00 0.00 0.00 2.69
2130 2261 4.578105 CAGAGGGAGTATTTCATTTGCTCC 59.422 45.833 0.00 0.00 43.56 4.70
2136 2267 6.380079 AGTGAACAGAGGGAGTATTTCATT 57.620 37.500 0.00 0.00 0.00 2.57
2138 2269 5.825593 AAGTGAACAGAGGGAGTATTTCA 57.174 39.130 0.00 0.00 0.00 2.69
2145 2276 8.487028 AGGTATTATAAAAGTGAACAGAGGGAG 58.513 37.037 0.00 0.00 0.00 4.30
2146 2277 8.388656 AGGTATTATAAAAGTGAACAGAGGGA 57.611 34.615 0.00 0.00 0.00 4.20
2147 2278 8.893727 CAAGGTATTATAAAAGTGAACAGAGGG 58.106 37.037 0.00 0.00 0.00 4.30
2163 2294 9.739276 TTGTCTGAAATGTCTTCAAGGTATTAT 57.261 29.630 0.00 0.00 0.00 1.28
2164 2295 9.739276 ATTGTCTGAAATGTCTTCAAGGTATTA 57.261 29.630 0.00 0.00 0.00 0.98
2165 2296 8.641498 ATTGTCTGAAATGTCTTCAAGGTATT 57.359 30.769 0.00 0.00 0.00 1.89
2166 2297 9.911788 ATATTGTCTGAAATGTCTTCAAGGTAT 57.088 29.630 0.00 0.00 0.00 2.73
2167 2298 9.166173 CATATTGTCTGAAATGTCTTCAAGGTA 57.834 33.333 0.00 0.00 0.00 3.08
2168 2299 7.362401 GCATATTGTCTGAAATGTCTTCAAGGT 60.362 37.037 0.00 0.00 0.00 3.50
2169 2300 6.971184 GCATATTGTCTGAAATGTCTTCAAGG 59.029 38.462 0.00 0.00 0.00 3.61
2170 2301 7.532571 TGCATATTGTCTGAAATGTCTTCAAG 58.467 34.615 0.00 0.00 0.00 3.02
2171 2302 7.451501 TGCATATTGTCTGAAATGTCTTCAA 57.548 32.000 0.00 0.00 0.00 2.69
2172 2303 7.451501 TTGCATATTGTCTGAAATGTCTTCA 57.548 32.000 0.00 0.00 0.00 3.02
2173 2304 8.746922 TTTTGCATATTGTCTGAAATGTCTTC 57.253 30.769 0.00 0.00 0.00 2.87
2176 2307 9.793252 ACTATTTTGCATATTGTCTGAAATGTC 57.207 29.630 0.00 0.00 0.00 3.06
2177 2308 9.793252 GACTATTTTGCATATTGTCTGAAATGT 57.207 29.630 13.05 4.31 0.00 2.71
2178 2309 9.241317 GGACTATTTTGCATATTGTCTGAAATG 57.759 33.333 17.05 4.47 31.36 2.32
2179 2310 8.970020 TGGACTATTTTGCATATTGTCTGAAAT 58.030 29.630 17.05 7.71 31.36 2.17
2180 2311 8.347004 TGGACTATTTTGCATATTGTCTGAAA 57.653 30.769 17.05 1.68 31.36 2.69
2181 2312 7.936496 TGGACTATTTTGCATATTGTCTGAA 57.064 32.000 17.05 6.92 31.36 3.02
2182 2313 8.523915 AATGGACTATTTTGCATATTGTCTGA 57.476 30.769 17.05 9.36 31.36 3.27
2183 2314 9.590451 AAAATGGACTATTTTGCATATTGTCTG 57.410 29.630 8.56 0.00 44.98 3.51
2196 2327 8.463930 TTCAGACAACTCAAAATGGACTATTT 57.536 30.769 0.00 0.00 40.67 1.40
2197 2328 8.352942 GTTTCAGACAACTCAAAATGGACTATT 58.647 33.333 0.00 0.00 0.00 1.73
2198 2329 7.307989 CGTTTCAGACAACTCAAAATGGACTAT 60.308 37.037 0.00 0.00 0.00 2.12
2199 2330 6.018262 CGTTTCAGACAACTCAAAATGGACTA 60.018 38.462 0.00 0.00 0.00 2.59
2200 2331 5.220854 CGTTTCAGACAACTCAAAATGGACT 60.221 40.000 0.00 0.00 0.00 3.85
2201 2332 4.970003 CGTTTCAGACAACTCAAAATGGAC 59.030 41.667 0.00 0.00 0.00 4.02
2202 2333 4.878971 TCGTTTCAGACAACTCAAAATGGA 59.121 37.500 0.00 0.00 0.00 3.41
2203 2334 4.970003 GTCGTTTCAGACAACTCAAAATGG 59.030 41.667 0.00 0.00 40.65 3.16
2204 2335 5.810525 AGTCGTTTCAGACAACTCAAAATG 58.189 37.500 0.00 0.00 43.24 2.32
2205 2336 6.436843 AAGTCGTTTCAGACAACTCAAAAT 57.563 33.333 0.00 0.00 43.24 1.82
2206 2337 5.873179 AAGTCGTTTCAGACAACTCAAAA 57.127 34.783 0.00 0.00 43.24 2.44
2207 2338 5.870433 TGTAAGTCGTTTCAGACAACTCAAA 59.130 36.000 0.00 0.00 43.24 2.69
2208 2339 5.412640 TGTAAGTCGTTTCAGACAACTCAA 58.587 37.500 0.00 0.00 43.24 3.02
2209 2340 5.001237 TGTAAGTCGTTTCAGACAACTCA 57.999 39.130 0.00 0.00 43.24 3.41
2210 2341 5.290158 TGTTGTAAGTCGTTTCAGACAACTC 59.710 40.000 14.61 0.00 44.34 3.01
2211 2342 5.172934 TGTTGTAAGTCGTTTCAGACAACT 58.827 37.500 14.61 0.00 44.34 3.16
2212 2343 5.063060 ACTGTTGTAAGTCGTTTCAGACAAC 59.937 40.000 8.39 8.39 44.31 3.32
2213 2344 5.062934 CACTGTTGTAAGTCGTTTCAGACAA 59.937 40.000 0.00 0.00 43.24 3.18
2214 2345 4.565166 CACTGTTGTAAGTCGTTTCAGACA 59.435 41.667 0.00 0.00 43.24 3.41
2215 2346 4.802039 TCACTGTTGTAAGTCGTTTCAGAC 59.198 41.667 0.00 0.00 41.23 3.51
2216 2347 5.001237 TCACTGTTGTAAGTCGTTTCAGA 57.999 39.130 0.00 0.00 0.00 3.27
2217 2348 5.490213 GTTCACTGTTGTAAGTCGTTTCAG 58.510 41.667 0.00 0.00 0.00 3.02
2218 2349 4.031991 CGTTCACTGTTGTAAGTCGTTTCA 59.968 41.667 0.00 0.00 0.00 2.69
2219 2350 4.502558 CGTTCACTGTTGTAAGTCGTTTC 58.497 43.478 0.00 0.00 0.00 2.78
2220 2351 3.307782 CCGTTCACTGTTGTAAGTCGTTT 59.692 43.478 0.00 0.00 0.00 3.60
2221 2352 2.861935 CCGTTCACTGTTGTAAGTCGTT 59.138 45.455 0.00 0.00 0.00 3.85
2222 2353 2.099592 TCCGTTCACTGTTGTAAGTCGT 59.900 45.455 0.00 0.00 0.00 4.34
2223 2354 2.724690 CTCCGTTCACTGTTGTAAGTCG 59.275 50.000 0.00 0.00 0.00 4.18
2224 2355 3.057734 CCTCCGTTCACTGTTGTAAGTC 58.942 50.000 0.00 0.00 0.00 3.01
2225 2356 2.224209 CCCTCCGTTCACTGTTGTAAGT 60.224 50.000 0.00 0.00 0.00 2.24
2226 2357 2.036733 TCCCTCCGTTCACTGTTGTAAG 59.963 50.000 0.00 0.00 0.00 2.34
2227 2358 2.036733 CTCCCTCCGTTCACTGTTGTAA 59.963 50.000 0.00 0.00 0.00 2.41
2228 2359 1.616865 CTCCCTCCGTTCACTGTTGTA 59.383 52.381 0.00 0.00 0.00 2.41
2229 2360 0.393077 CTCCCTCCGTTCACTGTTGT 59.607 55.000 0.00 0.00 0.00 3.32
2230 2361 0.393077 ACTCCCTCCGTTCACTGTTG 59.607 55.000 0.00 0.00 0.00 3.33
2231 2362 2.005370 TACTCCCTCCGTTCACTGTT 57.995 50.000 0.00 0.00 0.00 3.16
2232 2363 2.233305 ATACTCCCTCCGTTCACTGT 57.767 50.000 0.00 0.00 0.00 3.55
2233 2364 3.700038 AGTTATACTCCCTCCGTTCACTG 59.300 47.826 0.00 0.00 0.00 3.66
2234 2365 3.978610 AGTTATACTCCCTCCGTTCACT 58.021 45.455 0.00 0.00 0.00 3.41
2235 2366 4.732672 AAGTTATACTCCCTCCGTTCAC 57.267 45.455 0.00 0.00 0.00 3.18
2236 2367 5.750352 AAAAGTTATACTCCCTCCGTTCA 57.250 39.130 0.00 0.00 0.00 3.18
2237 2368 8.552083 TTTAAAAAGTTATACTCCCTCCGTTC 57.448 34.615 0.00 0.00 0.00 3.95
2238 2369 8.922931 TTTTAAAAAGTTATACTCCCTCCGTT 57.077 30.769 0.00 0.00 0.00 4.44
2289 2420 5.163602 CGAGGCTCTAAACTGATAGTTGAGT 60.164 44.000 13.50 0.00 37.81 3.41
2335 2466 0.878086 GATAGAGTTGCTCGCTGGCC 60.878 60.000 0.00 0.00 35.36 5.36
2341 2472 1.269517 GCCAGGAGATAGAGTTGCTCG 60.270 57.143 0.00 0.00 35.36 5.03
2348 2479 1.336440 CGTGTCAGCCAGGAGATAGAG 59.664 57.143 0.00 0.00 0.00 2.43
2350 2481 0.387202 CCGTGTCAGCCAGGAGATAG 59.613 60.000 0.00 0.00 0.00 2.08
2352 2483 2.362369 CCCGTGTCAGCCAGGAGAT 61.362 63.158 0.00 0.00 0.00 2.75
2362 2493 2.522436 ACCCTCGAACCCGTGTCA 60.522 61.111 0.00 0.00 37.05 3.58
2370 2501 1.376037 CCCAAGCTGACCCTCGAAC 60.376 63.158 0.00 0.00 0.00 3.95
2377 2508 0.385390 CAACAACACCCAAGCTGACC 59.615 55.000 0.00 0.00 0.00 4.02
2381 2512 1.064758 TGAGACAACAACACCCAAGCT 60.065 47.619 0.00 0.00 0.00 3.74
2385 2516 2.727123 ATGTGAGACAACAACACCCA 57.273 45.000 0.00 0.00 32.81 4.51
2386 2517 3.214328 AGAATGTGAGACAACAACACCC 58.786 45.455 0.00 0.00 32.81 4.61
2387 2518 3.251004 GGAGAATGTGAGACAACAACACC 59.749 47.826 0.00 0.00 32.81 4.16
2388 2519 4.130118 AGGAGAATGTGAGACAACAACAC 58.870 43.478 0.00 0.00 32.81 3.32
2389 2520 4.101585 AGAGGAGAATGTGAGACAACAACA 59.898 41.667 0.00 0.00 32.81 3.33
2390 2521 4.636249 AGAGGAGAATGTGAGACAACAAC 58.364 43.478 0.00 0.00 32.81 3.32
2418 2549 2.420967 GGAGCAGCCCCTACGATTTTTA 60.421 50.000 0.00 0.00 0.00 1.52
2432 2563 2.689034 ACCAGTAGGGGGAGCAGC 60.689 66.667 0.00 0.00 42.91 5.25
2435 2566 1.508256 ATTACACCAGTAGGGGGAGC 58.492 55.000 0.00 0.00 46.16 4.70
2461 2592 3.159472 TGGTCACGAGGCTCTAAACTTA 58.841 45.455 13.50 0.00 0.00 2.24
2462 2593 1.968493 TGGTCACGAGGCTCTAAACTT 59.032 47.619 13.50 0.00 0.00 2.66
2486 2618 8.743714 GTGAACCTAAGAAATGGATTCAATTCT 58.256 33.333 0.00 0.00 42.96 2.40
2496 2628 8.335532 TGTTATCTTGTGAACCTAAGAAATGG 57.664 34.615 0.00 0.00 36.59 3.16
2566 2698 5.497273 CAAATTTTACAAAACCGGTTGCAG 58.503 37.500 23.08 15.95 31.29 4.41
2568 2700 4.201822 TGCAAATTTTACAAAACCGGTTGC 60.202 37.500 23.08 16.31 36.43 4.17
2570 2702 6.685527 AATGCAAATTTTACAAAACCGGTT 57.314 29.167 15.86 15.86 0.00 4.44
2572 2704 7.977490 AAAAATGCAAATTTTACAAAACCGG 57.023 28.000 0.00 0.00 33.77 5.28
2633 2765 8.865090 CAAGGTCCATAGAATTGAGTAGATAGT 58.135 37.037 0.00 0.00 0.00 2.12
2640 2772 5.251700 AGTTCCAAGGTCCATAGAATTGAGT 59.748 40.000 0.00 0.00 0.00 3.41
2641 2773 5.749462 AGTTCCAAGGTCCATAGAATTGAG 58.251 41.667 0.00 0.00 0.00 3.02
2642 2774 5.779241 AGTTCCAAGGTCCATAGAATTGA 57.221 39.130 0.00 0.00 0.00 2.57
2643 2775 6.183347 AGAAGTTCCAAGGTCCATAGAATTG 58.817 40.000 0.00 0.00 0.00 2.32
2693 2827 5.765176 TGCTTTGATGATCTTGTGAAGTTG 58.235 37.500 0.00 0.00 0.00 3.16
2724 2858 5.452078 TGATAACACAAAAGCTTCCTTGG 57.548 39.130 13.92 6.76 0.00 3.61
2738 2872 4.393371 GGAGACTTGAAGCCTTGATAACAC 59.607 45.833 0.00 0.00 0.00 3.32
2797 2931 3.401182 GAACACCGTATACACAAACCCA 58.599 45.455 3.32 0.00 0.00 4.51
2800 2934 2.412770 CCCGAACACCGTATACACAAAC 59.587 50.000 3.32 0.00 36.31 2.93
2809 2944 2.344500 CCTTGCCCGAACACCGTA 59.656 61.111 0.00 0.00 36.31 4.02
2815 2950 0.392595 CCTAGTTCCCTTGCCCGAAC 60.393 60.000 0.00 0.00 38.93 3.95
2980 3126 0.535335 GTGGCCCGTGATCAAGACTA 59.465 55.000 10.47 0.00 0.00 2.59
2982 3128 0.535335 TAGTGGCCCGTGATCAAGAC 59.465 55.000 10.47 0.30 0.00 3.01
2991 3137 1.301954 GGAAATGGTAGTGGCCCGT 59.698 57.895 0.00 0.00 0.00 5.28
2992 3138 0.322997 TTGGAAATGGTAGTGGCCCG 60.323 55.000 0.00 0.00 0.00 6.13
3001 3147 0.872388 GAGCGACGTTTGGAAATGGT 59.128 50.000 0.00 0.00 0.00 3.55
3005 3151 0.250553 ATGGGAGCGACGTTTGGAAA 60.251 50.000 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.