Multiple sequence alignment - TraesCS1A01G255600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G255600 chr1A 100.000 2873 0 0 1 2873 447749976 447747104 0.000000e+00 5306.0
1 TraesCS1A01G255600 chr1B 94.648 1476 52 9 816 2274 468258677 468257212 0.000000e+00 2263.0
2 TraesCS1A01G255600 chr1B 84.167 360 47 5 12 370 468259266 468258916 9.860000e-90 340.0
3 TraesCS1A01G255600 chr1D 94.284 1347 57 6 844 2182 347301864 347300530 0.000000e+00 2043.0
4 TraesCS1A01G255600 chr1D 80.000 515 78 18 2374 2873 42128027 42128531 9.790000e-95 357.0
5 TraesCS1A01G255600 chr1D 80.000 515 77 12 2351 2850 415984993 415984490 9.790000e-95 357.0
6 TraesCS1A01G255600 chr6D 82.213 506 66 11 2351 2841 304688532 304689028 5.730000e-112 414.0
7 TraesCS1A01G255600 chr6D 83.607 366 48 7 1 365 91039047 91039401 1.650000e-87 333.0
8 TraesCS1A01G255600 chr5D 81.439 528 75 15 2360 2873 61485432 61484914 7.410000e-111 411.0
9 TraesCS1A01G255600 chr5D 78.771 537 92 14 2351 2873 220674559 220674031 9.860000e-90 340.0
10 TraesCS1A01G255600 chr7B 80.926 540 78 16 2350 2873 43300114 43300644 1.240000e-108 403.0
11 TraesCS1A01G255600 chr7D 80.784 536 84 13 2351 2873 595869088 595869617 4.460000e-108 401.0
12 TraesCS1A01G255600 chr2D 80.112 538 82 14 2351 2873 82093800 82094327 7.510000e-101 377.0
13 TraesCS1A01G255600 chr7A 79.516 537 86 18 2351 2873 704845451 704845977 7.570000e-96 361.0
14 TraesCS1A01G255600 chr2A 88.000 300 33 2 1 299 182895857 182895560 4.550000e-93 351.0
15 TraesCS1A01G255600 chr4D 83.880 366 54 4 1 365 342830820 342830459 7.620000e-91 344.0
16 TraesCS1A01G255600 chr4D 83.106 367 56 6 1 365 491000923 491001285 2.130000e-86 329.0
17 TraesCS1A01G255600 chr3A 83.651 367 51 7 1 365 104412187 104411828 1.280000e-88 337.0
18 TraesCS1A01G255600 chr3A 84.158 101 15 1 2351 2451 702330373 702330472 2.360000e-16 97.1
19 TraesCS1A01G255600 chr4A 78.639 529 93 17 2351 2873 550171476 550171990 1.650000e-87 333.0
20 TraesCS1A01G255600 chr3B 83.520 358 53 5 1 355 61982339 61981985 2.130000e-86 329.0
21 TraesCS1A01G255600 chr3D 82.258 372 60 5 1 370 39155769 39155402 1.660000e-82 316.0
22 TraesCS1A01G255600 chr3D 74.517 518 92 27 2360 2841 526996981 526996468 3.780000e-44 189.0
23 TraesCS1A01G255600 chr3D 79.775 178 30 6 2360 2532 69669342 69669518 1.080000e-24 124.0
24 TraesCS1A01G255600 chr4B 82.114 369 55 7 1 365 563828071 563827710 3.600000e-79 305.0
25 TraesCS1A01G255600 chr6B 79.798 396 64 11 2360 2743 14104776 14104385 1.010000e-69 274.0
26 TraesCS1A01G255600 chr6B 78.488 172 32 4 2363 2532 132107226 132107058 1.090000e-19 108.0
27 TraesCS1A01G255600 chr6B 77.049 183 38 3 2351 2531 8600641 8600821 5.060000e-18 102.0
28 TraesCS1A01G255600 chr5B 75.136 551 92 26 2360 2873 294124979 294125521 1.730000e-52 217.0
29 TraesCS1A01G255600 chr6A 78.857 175 30 6 2363 2534 73695043 73694873 8.410000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G255600 chr1A 447747104 447749976 2872 True 5306.0 5306 100.0000 1 2873 1 chr1A.!!$R1 2872
1 TraesCS1A01G255600 chr1B 468257212 468259266 2054 True 1301.5 2263 89.4075 12 2274 2 chr1B.!!$R1 2262
2 TraesCS1A01G255600 chr1D 347300530 347301864 1334 True 2043.0 2043 94.2840 844 2182 1 chr1D.!!$R1 1338
3 TraesCS1A01G255600 chr1D 42128027 42128531 504 False 357.0 357 80.0000 2374 2873 1 chr1D.!!$F1 499
4 TraesCS1A01G255600 chr1D 415984490 415984993 503 True 357.0 357 80.0000 2351 2850 1 chr1D.!!$R2 499
5 TraesCS1A01G255600 chr5D 61484914 61485432 518 True 411.0 411 81.4390 2360 2873 1 chr5D.!!$R1 513
6 TraesCS1A01G255600 chr5D 220674031 220674559 528 True 340.0 340 78.7710 2351 2873 1 chr5D.!!$R2 522
7 TraesCS1A01G255600 chr7B 43300114 43300644 530 False 403.0 403 80.9260 2350 2873 1 chr7B.!!$F1 523
8 TraesCS1A01G255600 chr7D 595869088 595869617 529 False 401.0 401 80.7840 2351 2873 1 chr7D.!!$F1 522
9 TraesCS1A01G255600 chr2D 82093800 82094327 527 False 377.0 377 80.1120 2351 2873 1 chr2D.!!$F1 522
10 TraesCS1A01G255600 chr7A 704845451 704845977 526 False 361.0 361 79.5160 2351 2873 1 chr7A.!!$F1 522
11 TraesCS1A01G255600 chr4A 550171476 550171990 514 False 333.0 333 78.6390 2351 2873 1 chr4A.!!$F1 522
12 TraesCS1A01G255600 chr5B 294124979 294125521 542 False 217.0 217 75.1360 2360 2873 1 chr5B.!!$F1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 440 0.032403 AGTACGCAACGGTGTTGCTA 59.968 50.0 26.31 16.89 42.87 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2323 2347 0.175073 ATTACTCCCGCGAAGTGACC 59.825 55.0 20.09 0.0 43.07 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.037447 AGTTGGAGAAGCAAGAGGCC 59.963 55.000 0.00 0.00 46.50 5.19
50 51 1.003355 TTGGAGAAGCAAGAGGCCG 60.003 57.895 0.00 0.00 46.50 6.13
51 52 2.821810 GGAGAAGCAAGAGGCCGC 60.822 66.667 0.00 0.00 46.50 6.53
61 62 1.528586 CAAGAGGCCGCGATCAAATAG 59.471 52.381 8.23 0.00 0.00 1.73
75 76 5.221067 CGATCAAATAGGAACTCGAGAAGGA 60.221 44.000 21.68 0.05 41.75 3.36
79 80 5.941555 AATAGGAACTCGAGAAGGACAAT 57.058 39.130 21.68 0.69 41.75 2.71
89 90 5.989477 TCGAGAAGGACAATACATTTGGAT 58.011 37.500 0.00 0.00 0.00 3.41
98 99 7.446625 AGGACAATACATTTGGATAGATTGAGC 59.553 37.037 0.00 0.00 0.00 4.26
104 105 5.298777 ACATTTGGATAGATTGAGCTTGAGC 59.701 40.000 0.00 0.00 42.49 4.26
119 120 1.999648 TGAGCAGGAAAGGTTGCAAT 58.000 45.000 0.59 0.00 42.67 3.56
147 148 1.506493 GATGCGAAGGATGCGAAGAT 58.494 50.000 0.00 0.00 42.52 2.40
154 155 3.302935 CGAAGGATGCGAAGATCATGTTG 60.303 47.826 0.00 0.00 42.52 3.33
155 156 3.548745 AGGATGCGAAGATCATGTTGA 57.451 42.857 0.00 0.00 0.00 3.18
156 157 3.201290 AGGATGCGAAGATCATGTTGAC 58.799 45.455 0.00 0.00 0.00 3.18
179 180 1.886542 ACGAAACCCTTTTGGATGAGC 59.113 47.619 0.00 0.00 44.07 4.26
180 181 1.885887 CGAAACCCTTTTGGATGAGCA 59.114 47.619 0.00 0.00 44.07 4.26
199 200 4.272489 AGCATATGCAAAGAAGTGGCTTA 58.728 39.130 28.62 0.00 45.16 3.09
200 201 4.891756 AGCATATGCAAAGAAGTGGCTTAT 59.108 37.500 28.62 0.00 45.16 1.73
207 208 5.357878 TGCAAAGAAGTGGCTTATGGATAAG 59.642 40.000 2.50 2.50 42.00 1.73
208 209 5.590259 GCAAAGAAGTGGCTTATGGATAAGA 59.410 40.000 10.08 0.00 41.72 2.10
209 210 6.095440 GCAAAGAAGTGGCTTATGGATAAGAA 59.905 38.462 10.08 0.00 41.72 2.52
210 211 7.680588 GCAAAGAAGTGGCTTATGGATAAGAAG 60.681 40.741 10.08 0.00 41.72 2.85
219 220 7.102993 GGCTTATGGATAAGAAGAAGGAGATC 58.897 42.308 10.08 0.00 41.72 2.75
237 238 1.089920 TCAACGAGCGTAGGGAGTAC 58.910 55.000 0.00 0.00 0.00 2.73
248 250 0.465824 AGGGAGTACGATCGGTGAGG 60.466 60.000 20.98 0.00 0.00 3.86
294 296 2.719979 CAAGGATGCATGCCGAGC 59.280 61.111 16.68 0.00 0.00 5.03
295 297 2.898840 AAGGATGCATGCCGAGCG 60.899 61.111 16.68 0.00 33.85 5.03
298 300 4.916293 GATGCATGCCGAGCGGGA 62.916 66.667 16.68 8.51 40.69 5.14
303 305 4.778143 ATGCCGAGCGGGACAACC 62.778 66.667 11.30 0.00 38.78 3.77
371 373 4.980805 GGTGGCGTCCGACAAGCA 62.981 66.667 0.00 0.00 33.39 3.91
372 374 3.712881 GTGGCGTCCGACAAGCAC 61.713 66.667 0.00 0.00 33.39 4.40
380 382 2.805353 CGACAAGCACGGACGGAG 60.805 66.667 0.00 0.00 0.00 4.63
381 383 3.112709 GACAAGCACGGACGGAGC 61.113 66.667 0.00 0.00 0.00 4.70
382 384 3.575351 GACAAGCACGGACGGAGCT 62.575 63.158 7.87 7.87 41.03 4.09
383 385 2.209064 GACAAGCACGGACGGAGCTA 62.209 60.000 12.85 0.00 37.70 3.32
384 386 1.805945 CAAGCACGGACGGAGCTAC 60.806 63.158 12.85 0.00 37.70 3.58
385 387 3.338126 AAGCACGGACGGAGCTACG 62.338 63.158 19.02 19.02 37.70 3.51
386 388 3.807538 GCACGGACGGAGCTACGA 61.808 66.667 28.55 0.00 37.61 3.43
387 389 3.108343 CACGGACGGAGCTACGAT 58.892 61.111 28.55 9.55 37.61 3.73
388 390 1.432251 CACGGACGGAGCTACGATT 59.568 57.895 28.55 2.17 37.61 3.34
389 391 0.866061 CACGGACGGAGCTACGATTG 60.866 60.000 28.55 15.82 37.61 2.67
390 392 1.028330 ACGGACGGAGCTACGATTGA 61.028 55.000 28.55 0.00 37.61 2.57
391 393 0.317103 CGGACGGAGCTACGATTGAG 60.317 60.000 28.55 7.50 37.61 3.02
392 394 0.595310 GGACGGAGCTACGATTGAGC 60.595 60.000 28.55 6.45 40.42 4.26
393 395 0.595310 GACGGAGCTACGATTGAGCC 60.595 60.000 28.55 0.00 41.06 4.70
394 396 1.320344 ACGGAGCTACGATTGAGCCA 61.320 55.000 28.55 0.00 41.06 4.75
395 397 0.872021 CGGAGCTACGATTGAGCCAC 60.872 60.000 14.92 0.00 41.06 5.01
396 398 0.872021 GGAGCTACGATTGAGCCACG 60.872 60.000 0.00 0.00 41.06 4.94
397 399 1.483424 GAGCTACGATTGAGCCACGC 61.483 60.000 0.00 0.00 41.06 5.34
398 400 2.526120 GCTACGATTGAGCCACGCC 61.526 63.158 0.00 0.00 33.60 5.68
399 401 1.883084 CTACGATTGAGCCACGCCC 60.883 63.158 0.00 0.00 0.00 6.13
400 402 3.379865 TACGATTGAGCCACGCCCC 62.380 63.158 0.00 0.00 0.00 5.80
401 403 4.776322 CGATTGAGCCACGCCCCA 62.776 66.667 0.00 0.00 0.00 4.96
402 404 2.825836 GATTGAGCCACGCCCCAG 60.826 66.667 0.00 0.00 0.00 4.45
403 405 4.431131 ATTGAGCCACGCCCCAGG 62.431 66.667 0.00 0.00 0.00 4.45
420 422 4.496336 GCCCCAGGCCTGCTACAG 62.496 72.222 28.39 13.14 44.06 2.74
421 423 3.011517 CCCCAGGCCTGCTACAGT 61.012 66.667 28.39 0.00 0.00 3.55
422 424 1.689233 CCCCAGGCCTGCTACAGTA 60.689 63.158 28.39 0.00 0.00 2.74
423 425 1.522569 CCCAGGCCTGCTACAGTAC 59.477 63.158 28.39 0.00 0.00 2.73
424 426 1.141881 CCAGGCCTGCTACAGTACG 59.858 63.158 28.39 6.34 0.00 3.67
425 427 1.519455 CAGGCCTGCTACAGTACGC 60.519 63.158 22.33 0.00 0.00 4.42
426 428 1.982395 AGGCCTGCTACAGTACGCA 60.982 57.895 3.11 5.08 34.54 5.24
427 429 1.079405 GGCCTGCTACAGTACGCAA 60.079 57.895 0.00 0.00 35.46 4.85
428 430 1.359459 GGCCTGCTACAGTACGCAAC 61.359 60.000 0.00 2.91 35.46 4.17
429 431 1.683790 GCCTGCTACAGTACGCAACG 61.684 60.000 6.28 0.00 35.46 4.10
430 432 1.076533 CCTGCTACAGTACGCAACGG 61.077 60.000 6.28 2.72 35.46 4.44
431 433 0.388134 CTGCTACAGTACGCAACGGT 60.388 55.000 6.28 0.44 39.93 4.83
432 434 0.665068 TGCTACAGTACGCAACGGTG 60.665 55.000 0.00 0.00 37.10 4.94
433 435 0.665369 GCTACAGTACGCAACGGTGT 60.665 55.000 0.66 0.00 37.10 4.16
434 436 1.774639 CTACAGTACGCAACGGTGTT 58.225 50.000 0.66 0.00 37.10 3.32
435 437 1.454276 CTACAGTACGCAACGGTGTTG 59.546 52.381 0.66 5.34 37.10 3.33
436 438 1.083015 CAGTACGCAACGGTGTTGC 60.083 57.895 21.38 21.38 41.71 4.17
437 439 1.227438 AGTACGCAACGGTGTTGCT 60.227 52.632 26.31 17.69 42.87 3.91
438 440 0.032403 AGTACGCAACGGTGTTGCTA 59.968 50.000 26.31 16.89 42.87 3.49
439 441 0.162294 GTACGCAACGGTGTTGCTAC 59.838 55.000 26.31 22.05 42.87 3.58
440 442 0.249363 TACGCAACGGTGTTGCTACA 60.249 50.000 26.31 12.42 42.87 2.74
447 449 2.281208 GTGTTGCTACACGGCCCA 60.281 61.111 15.45 0.00 44.66 5.36
448 450 1.894756 GTGTTGCTACACGGCCCAA 60.895 57.895 15.45 0.00 44.66 4.12
449 451 1.152943 TGTTGCTACACGGCCCAAA 60.153 52.632 0.00 0.00 0.00 3.28
450 452 0.752009 TGTTGCTACACGGCCCAAAA 60.752 50.000 0.00 0.00 0.00 2.44
451 453 0.601057 GTTGCTACACGGCCCAAAAT 59.399 50.000 0.00 0.00 0.00 1.82
452 454 0.600557 TTGCTACACGGCCCAAAATG 59.399 50.000 0.00 0.00 0.00 2.32
453 455 1.153842 GCTACACGGCCCAAAATGC 60.154 57.895 0.00 0.00 0.00 3.56
454 456 1.510844 CTACACGGCCCAAAATGCC 59.489 57.895 0.00 0.00 45.70 4.40
464 466 4.045636 GCCCAAAATGCCATAGTAACTG 57.954 45.455 0.00 0.00 0.00 3.16
465 467 3.699038 GCCCAAAATGCCATAGTAACTGA 59.301 43.478 0.00 0.00 0.00 3.41
466 468 4.159506 GCCCAAAATGCCATAGTAACTGAA 59.840 41.667 0.00 0.00 0.00 3.02
467 469 5.679638 GCCCAAAATGCCATAGTAACTGAAG 60.680 44.000 0.00 0.00 0.00 3.02
468 470 5.418840 CCCAAAATGCCATAGTAACTGAAGT 59.581 40.000 0.00 0.00 0.00 3.01
469 471 6.601613 CCCAAAATGCCATAGTAACTGAAGTA 59.398 38.462 0.00 0.00 0.00 2.24
470 472 7.285401 CCCAAAATGCCATAGTAACTGAAGTAT 59.715 37.037 0.00 0.00 0.00 2.12
471 473 8.131100 CCAAAATGCCATAGTAACTGAAGTATG 58.869 37.037 0.00 0.00 34.05 2.39
472 474 8.677300 CAAAATGCCATAGTAACTGAAGTATGT 58.323 33.333 0.00 0.00 32.90 2.29
473 475 9.899661 AAAATGCCATAGTAACTGAAGTATGTA 57.100 29.630 0.00 0.00 32.90 2.29
477 479 9.899661 TGCCATAGTAACTGAAGTATGTATTTT 57.100 29.630 0.00 0.00 32.90 1.82
482 484 7.739295 AGTAACTGAAGTATGTATTTTGCACG 58.261 34.615 0.00 0.00 0.00 5.34
483 485 4.969816 ACTGAAGTATGTATTTTGCACGC 58.030 39.130 0.00 0.00 0.00 5.34
484 486 4.142687 ACTGAAGTATGTATTTTGCACGCC 60.143 41.667 0.00 0.00 0.00 5.68
485 487 3.127895 TGAAGTATGTATTTTGCACGCCC 59.872 43.478 0.00 0.00 0.00 6.13
486 488 2.021457 AGTATGTATTTTGCACGCCCC 58.979 47.619 0.00 0.00 0.00 5.80
487 489 1.746220 GTATGTATTTTGCACGCCCCA 59.254 47.619 0.00 0.00 0.00 4.96
488 490 0.817013 ATGTATTTTGCACGCCCCAG 59.183 50.000 0.00 0.00 0.00 4.45
489 491 1.247419 TGTATTTTGCACGCCCCAGG 61.247 55.000 0.00 0.00 0.00 4.45
490 492 2.347322 TATTTTGCACGCCCCAGGC 61.347 57.895 0.00 0.00 46.75 4.85
516 518 4.044390 AGGCCCCCTGATCTGGGT 62.044 66.667 29.93 13.56 45.70 4.51
517 519 3.493303 GGCCCCCTGATCTGGGTC 61.493 72.222 29.93 21.97 45.70 4.46
518 520 3.493303 GCCCCCTGATCTGGGTCC 61.493 72.222 29.93 19.01 45.70 4.46
519 521 2.374342 CCCCCTGATCTGGGTCCT 59.626 66.667 29.93 0.00 45.70 3.85
520 522 1.632164 CCCCCTGATCTGGGTCCTA 59.368 63.158 29.93 0.00 45.70 2.94
521 523 0.472734 CCCCCTGATCTGGGTCCTAG 60.473 65.000 29.93 17.29 45.70 3.02
522 524 0.563173 CCCCTGATCTGGGTCCTAGA 59.437 60.000 29.93 7.50 45.70 2.43
523 525 1.150986 CCCCTGATCTGGGTCCTAGAT 59.849 57.143 29.93 17.19 45.70 1.98
524 526 2.534990 CCCTGATCTGGGTCCTAGATC 58.465 57.143 29.57 29.57 46.82 2.75
525 527 2.534990 CCTGATCTGGGTCCTAGATCC 58.465 57.143 31.68 19.33 46.35 3.36
526 528 2.166829 CTGATCTGGGTCCTAGATCCG 58.833 57.143 31.68 25.11 46.35 4.18
527 529 0.892063 GATCTGGGTCCTAGATCCGC 59.108 60.000 27.25 9.67 42.94 5.54
528 530 0.543174 ATCTGGGTCCTAGATCCGCC 60.543 60.000 11.86 0.00 35.15 6.13
529 531 1.457643 CTGGGTCCTAGATCCGCCA 60.458 63.158 0.00 0.00 35.15 5.69
530 532 1.749334 CTGGGTCCTAGATCCGCCAC 61.749 65.000 0.00 0.00 35.15 5.01
531 533 1.457831 GGGTCCTAGATCCGCCACT 60.458 63.158 0.00 0.00 0.00 4.00
532 534 0.178970 GGGTCCTAGATCCGCCACTA 60.179 60.000 0.00 0.00 0.00 2.74
533 535 0.960286 GGTCCTAGATCCGCCACTAC 59.040 60.000 0.00 0.00 0.00 2.73
534 536 0.960286 GTCCTAGATCCGCCACTACC 59.040 60.000 0.00 0.00 0.00 3.18
535 537 0.554305 TCCTAGATCCGCCACTACCA 59.446 55.000 0.00 0.00 0.00 3.25
536 538 1.063492 TCCTAGATCCGCCACTACCAA 60.063 52.381 0.00 0.00 0.00 3.67
537 539 1.068741 CCTAGATCCGCCACTACCAAC 59.931 57.143 0.00 0.00 0.00 3.77
538 540 1.754803 CTAGATCCGCCACTACCAACA 59.245 52.381 0.00 0.00 0.00 3.33
539 541 0.981183 AGATCCGCCACTACCAACAA 59.019 50.000 0.00 0.00 0.00 2.83
540 542 1.066143 AGATCCGCCACTACCAACAAG 60.066 52.381 0.00 0.00 0.00 3.16
541 543 0.690762 ATCCGCCACTACCAACAAGT 59.309 50.000 0.00 0.00 0.00 3.16
542 544 0.250124 TCCGCCACTACCAACAAGTG 60.250 55.000 0.00 0.00 43.26 3.16
543 545 0.250124 CCGCCACTACCAACAAGTGA 60.250 55.000 4.84 0.00 45.89 3.41
544 546 1.610624 CCGCCACTACCAACAAGTGAT 60.611 52.381 4.84 0.00 45.89 3.06
545 547 2.354303 CCGCCACTACCAACAAGTGATA 60.354 50.000 4.84 0.00 45.89 2.15
546 548 2.671396 CGCCACTACCAACAAGTGATAC 59.329 50.000 4.84 0.00 45.89 2.24
547 549 2.671396 GCCACTACCAACAAGTGATACG 59.329 50.000 4.84 0.00 45.89 3.06
548 550 3.259064 CCACTACCAACAAGTGATACGG 58.741 50.000 4.84 0.00 45.89 4.02
549 551 2.671396 CACTACCAACAAGTGATACGGC 59.329 50.000 0.00 0.00 45.89 5.68
552 554 3.620427 ACCAACAAGTGATACGGCATA 57.380 42.857 0.00 0.00 0.00 3.14
569 571 0.747255 ATACGGCAAGCGAGTCATCT 59.253 50.000 0.00 0.00 0.00 2.90
572 574 1.016130 CGGCAAGCGAGTCATCTGTT 61.016 55.000 0.00 0.00 0.00 3.16
574 576 1.661112 GGCAAGCGAGTCATCTGTTAC 59.339 52.381 0.00 0.00 0.00 2.50
578 580 1.630148 GCGAGTCATCTGTTACGCTT 58.370 50.000 0.00 0.00 42.19 4.68
586 588 2.093306 TCTGTTACGCTTGGACATGG 57.907 50.000 0.00 0.00 0.00 3.66
589 591 3.009723 CTGTTACGCTTGGACATGGATT 58.990 45.455 0.00 0.00 0.00 3.01
591 593 3.438781 TGTTACGCTTGGACATGGATTTC 59.561 43.478 0.00 0.00 0.00 2.17
593 595 2.513753 ACGCTTGGACATGGATTTCAA 58.486 42.857 0.00 0.00 0.00 2.69
598 600 4.632688 GCTTGGACATGGATTTCAATTTGG 59.367 41.667 0.00 0.00 0.00 3.28
604 606 5.180271 ACATGGATTTCAATTTGGCATGTC 58.820 37.500 0.00 0.00 0.00 3.06
605 607 4.205065 TGGATTTCAATTTGGCATGTCC 57.795 40.909 0.00 0.00 0.00 4.02
614 616 5.070981 TCAATTTGGCATGTCCCTTTTGTTA 59.929 36.000 0.00 0.00 0.00 2.41
621 623 6.268847 TGGCATGTCCCTTTTGTTAAACTATT 59.731 34.615 0.00 0.00 0.00 1.73
659 666 6.496571 TGTTTCGAACAATACGGACAATTTT 58.503 32.000 0.00 0.00 38.72 1.82
662 669 8.411928 GTTTCGAACAATACGGACAATTTTTAC 58.588 33.333 0.00 0.00 0.00 2.01
663 670 7.187244 TCGAACAATACGGACAATTTTTACA 57.813 32.000 0.00 0.00 0.00 2.41
664 671 7.808672 TCGAACAATACGGACAATTTTTACAT 58.191 30.769 0.00 0.00 0.00 2.29
665 672 8.291032 TCGAACAATACGGACAATTTTTACATT 58.709 29.630 0.00 0.00 0.00 2.71
675 682 8.119845 CGGACAATTTTTACATTGTATGATCGA 58.880 33.333 0.00 0.00 45.55 3.59
682 689 8.637281 TTTTACATTGTATGATCGACGTGTAT 57.363 30.769 0.00 0.00 0.00 2.29
687 694 6.986424 TTGTATGATCGACGTGTATGAATC 57.014 37.500 0.00 0.00 0.00 2.52
689 696 3.685836 TGATCGACGTGTATGAATCGT 57.314 42.857 0.00 0.00 40.49 3.73
693 700 3.880610 TCGACGTGTATGAATCGTATGG 58.119 45.455 0.00 0.00 37.92 2.74
698 705 6.579666 CGACGTGTATGAATCGTATGGATTTA 59.420 38.462 0.00 0.00 45.33 1.40
701 708 9.268268 ACGTGTATGAATCGTATGGATTTAAAT 57.732 29.630 0.00 0.00 45.33 1.40
718 725 8.088365 GGATTTAAATATCCACATTTAGGGCAC 58.912 37.037 0.00 0.00 43.04 5.01
719 726 6.627395 TTAAATATCCACATTTAGGGCACG 57.373 37.500 0.00 0.00 33.20 5.34
722 729 0.322098 TCCACATTTAGGGCACGTGG 60.322 55.000 18.88 3.74 46.90 4.94
725 732 1.401552 CACATTTAGGGCACGTGGATG 59.598 52.381 18.88 0.00 0.00 3.51
736 743 0.463654 ACGTGGATGTGCGGCAATAT 60.464 50.000 3.23 1.96 0.00 1.28
741 748 1.543208 GGATGTGCGGCAATATGAGGA 60.543 52.381 3.23 0.00 0.00 3.71
742 749 2.221169 GATGTGCGGCAATATGAGGAA 58.779 47.619 3.23 0.00 0.00 3.36
743 750 1.378531 TGTGCGGCAATATGAGGAAC 58.621 50.000 3.23 0.00 0.00 3.62
745 752 1.331756 GTGCGGCAATATGAGGAACTG 59.668 52.381 3.23 0.00 41.55 3.16
747 754 1.747206 GCGGCAATATGAGGAACTGGT 60.747 52.381 0.00 0.00 41.55 4.00
748 755 2.643551 CGGCAATATGAGGAACTGGTT 58.356 47.619 0.00 0.00 41.55 3.67
749 756 3.804036 CGGCAATATGAGGAACTGGTTA 58.196 45.455 0.00 0.00 41.55 2.85
750 757 3.560068 CGGCAATATGAGGAACTGGTTAC 59.440 47.826 0.00 0.00 41.55 2.50
751 758 3.560068 GGCAATATGAGGAACTGGTTACG 59.440 47.826 0.00 0.00 41.55 3.18
753 760 5.057149 GCAATATGAGGAACTGGTTACGAT 58.943 41.667 0.00 0.00 41.55 3.73
754 761 5.050091 GCAATATGAGGAACTGGTTACGATG 60.050 44.000 0.00 0.00 41.55 3.84
755 762 5.871396 ATATGAGGAACTGGTTACGATGT 57.129 39.130 0.00 0.00 41.55 3.06
756 763 3.587797 TGAGGAACTGGTTACGATGTC 57.412 47.619 0.00 0.00 41.55 3.06
757 764 3.162666 TGAGGAACTGGTTACGATGTCT 58.837 45.455 0.00 0.00 41.55 3.41
758 765 4.338012 TGAGGAACTGGTTACGATGTCTA 58.662 43.478 0.00 0.00 41.55 2.59
759 766 4.954202 TGAGGAACTGGTTACGATGTCTAT 59.046 41.667 0.00 0.00 41.55 1.98
760 767 5.163550 TGAGGAACTGGTTACGATGTCTATG 60.164 44.000 0.00 0.00 41.55 2.23
763 770 5.519206 GGAACTGGTTACGATGTCTATGAAC 59.481 44.000 0.00 0.00 0.00 3.18
764 771 5.654603 ACTGGTTACGATGTCTATGAACA 57.345 39.130 0.00 0.00 0.00 3.18
765 772 5.408356 ACTGGTTACGATGTCTATGAACAC 58.592 41.667 0.00 0.00 30.55 3.32
766 773 4.417506 TGGTTACGATGTCTATGAACACG 58.582 43.478 0.00 0.00 33.17 4.49
770 777 1.209128 GATGTCTATGAACACGCCCG 58.791 55.000 0.00 0.00 30.55 6.13
771 778 0.810031 ATGTCTATGAACACGCCCGC 60.810 55.000 0.00 0.00 30.55 6.13
772 779 1.447140 GTCTATGAACACGCCCGCA 60.447 57.895 0.00 0.00 0.00 5.69
773 780 1.153647 TCTATGAACACGCCCGCAG 60.154 57.895 0.00 0.00 0.00 5.18
788 795 2.783828 CGCAGGTGTATAGAGAGTGG 57.216 55.000 0.00 0.00 0.00 4.00
789 796 2.298610 CGCAGGTGTATAGAGAGTGGA 58.701 52.381 0.00 0.00 0.00 4.02
790 797 2.887783 CGCAGGTGTATAGAGAGTGGAT 59.112 50.000 0.00 0.00 0.00 3.41
791 798 3.319405 CGCAGGTGTATAGAGAGTGGATT 59.681 47.826 0.00 0.00 0.00 3.01
792 799 4.202161 CGCAGGTGTATAGAGAGTGGATTT 60.202 45.833 0.00 0.00 0.00 2.17
793 800 5.053145 GCAGGTGTATAGAGAGTGGATTTG 58.947 45.833 0.00 0.00 0.00 2.32
794 801 5.053145 CAGGTGTATAGAGAGTGGATTTGC 58.947 45.833 0.00 0.00 0.00 3.68
795 802 4.101741 AGGTGTATAGAGAGTGGATTTGCC 59.898 45.833 0.00 0.00 37.10 4.52
796 803 4.141711 GGTGTATAGAGAGTGGATTTGCCA 60.142 45.833 0.00 0.00 46.96 4.92
803 810 4.335214 TGGATTTGCCATGTCCGG 57.665 55.556 0.00 0.00 43.33 5.14
804 811 1.688211 TGGATTTGCCATGTCCGGA 59.312 52.632 0.00 0.00 43.33 5.14
805 812 0.038890 TGGATTTGCCATGTCCGGAA 59.961 50.000 5.23 0.00 43.33 4.30
806 813 1.181786 GGATTTGCCATGTCCGGAAA 58.818 50.000 5.23 0.00 36.34 3.13
807 814 1.756538 GGATTTGCCATGTCCGGAAAT 59.243 47.619 5.23 2.15 36.34 2.17
808 815 2.481795 GGATTTGCCATGTCCGGAAATG 60.482 50.000 25.57 25.57 36.34 2.32
809 816 1.916506 TTTGCCATGTCCGGAAATGA 58.083 45.000 32.51 13.65 0.00 2.57
810 817 1.173043 TTGCCATGTCCGGAAATGAC 58.827 50.000 32.51 23.56 0.00 3.06
811 818 1.024046 TGCCATGTCCGGAAATGACG 61.024 55.000 32.51 19.16 35.46 4.35
812 819 1.024579 GCCATGTCCGGAAATGACGT 61.025 55.000 32.51 7.68 35.46 4.34
813 820 0.726827 CCATGTCCGGAAATGACGTG 59.273 55.000 32.51 18.84 45.23 4.49
814 821 1.438651 CATGTCCGGAAATGACGTGT 58.561 50.000 28.01 0.00 42.25 4.49
838 845 1.635663 CCACGATTTCGACTGTGCCC 61.636 60.000 7.01 0.00 43.02 5.36
842 855 0.321653 GATTTCGACTGTGCCCCTGT 60.322 55.000 0.00 0.00 0.00 4.00
846 859 0.613572 TCGACTGTGCCCCTGTATCA 60.614 55.000 0.00 0.00 0.00 2.15
875 888 1.067974 CCACACGTGTTACAGTCCAGA 59.932 52.381 20.79 0.00 0.00 3.86
897 910 6.878923 CAGATTTACACAAGTTCCCATAGACA 59.121 38.462 0.00 0.00 0.00 3.41
922 935 2.145536 GCATTGCCCTCCAAAACTTTG 58.854 47.619 0.00 0.00 36.92 2.77
938 951 9.528018 CCAAAACTTTGAAGTGTGTATAAATGT 57.472 29.630 3.72 0.00 40.55 2.71
942 955 8.099364 ACTTTGAAGTGTGTATAAATGTCCTG 57.901 34.615 0.00 0.00 37.98 3.86
972 985 0.613260 TTTCCCACCATCTCACTCCG 59.387 55.000 0.00 0.00 0.00 4.63
1299 1312 4.083862 GACGGCTCCCACCACCTC 62.084 72.222 0.00 0.00 0.00 3.85
1302 1315 3.403558 GGCTCCCACCACCTCCTC 61.404 72.222 0.00 0.00 0.00 3.71
1934 1947 4.072088 CGTTTGGACGTGCTCGCC 62.072 66.667 8.99 10.92 44.08 5.54
1946 1959 3.827898 CTCGCCTGTCCCGGTCTC 61.828 72.222 0.00 0.00 0.00 3.36
1949 1962 4.083862 GCCTGTCCCGGTCTCCAC 62.084 72.222 0.00 0.00 0.00 4.02
1950 1963 2.283966 CCTGTCCCGGTCTCCACT 60.284 66.667 0.00 0.00 0.00 4.00
1951 1964 2.352032 CCTGTCCCGGTCTCCACTC 61.352 68.421 0.00 0.00 0.00 3.51
1952 1965 1.304547 CTGTCCCGGTCTCCACTCT 60.305 63.158 0.00 0.00 0.00 3.24
2027 2041 1.298339 GCGTGCCGAATAATGGTGC 60.298 57.895 0.00 0.00 0.00 5.01
2062 2079 8.744652 TGTTAGGTACATAAACAAATGGAATGG 58.255 33.333 0.79 0.00 30.54 3.16
2086 2103 8.456471 TGGGATCGAATGTATACTCGTAATTAG 58.544 37.037 12.58 1.88 36.46 1.73
2098 2115 4.588951 ACTCGTAATTAGGGCTCATCATGA 59.411 41.667 0.00 0.00 0.00 3.07
2118 2135 5.619625 TGACGTATCATCACAATGCAAAA 57.380 34.783 0.00 0.00 32.58 2.44
2162 2186 2.190578 GGTGGATCCGAAGCAGGG 59.809 66.667 7.39 0.00 0.00 4.45
2176 2200 2.285442 AGGGTTCGGGGGAGAAGG 60.285 66.667 0.00 0.00 0.00 3.46
2199 2223 1.076332 GTATCGTCGTTTTGCAGCCT 58.924 50.000 0.00 0.00 0.00 4.58
2201 2225 1.359848 ATCGTCGTTTTGCAGCCTAG 58.640 50.000 0.00 0.00 0.00 3.02
2221 2245 3.225940 AGTTGCTGCTTTTTAGGCTTCT 58.774 40.909 0.00 0.00 0.00 2.85
2243 2267 1.451927 TGATGATGTTGGCGCCTCC 60.452 57.895 29.70 18.26 0.00 4.30
2258 2282 1.479323 GCCTCCAACAACATGCATCAT 59.521 47.619 0.00 0.00 0.00 2.45
2271 2295 3.810310 TGCATCATGTACGTGTGGATA 57.190 42.857 14.63 0.00 0.00 2.59
2272 2296 4.335400 TGCATCATGTACGTGTGGATAT 57.665 40.909 14.63 0.00 0.00 1.63
2275 2299 5.236263 TGCATCATGTACGTGTGGATATTTC 59.764 40.000 14.63 0.47 0.00 2.17
2276 2300 5.466728 GCATCATGTACGTGTGGATATTTCT 59.533 40.000 14.63 0.00 0.00 2.52
2277 2301 6.645003 GCATCATGTACGTGTGGATATTTCTA 59.355 38.462 14.63 0.00 0.00 2.10
2278 2302 7.170828 GCATCATGTACGTGTGGATATTTCTAA 59.829 37.037 14.63 0.00 0.00 2.10
2279 2303 9.040939 CATCATGTACGTGTGGATATTTCTAAA 57.959 33.333 14.63 0.00 0.00 1.85
2280 2304 9.607988 ATCATGTACGTGTGGATATTTCTAAAA 57.392 29.630 14.63 0.00 0.00 1.52
2281 2305 9.438228 TCATGTACGTGTGGATATTTCTAAAAA 57.562 29.630 14.63 0.00 0.00 1.94
2313 2337 8.110970 TGTACGTGTGAATTATTGTAAGATCG 57.889 34.615 0.00 0.00 0.00 3.69
2314 2338 7.756272 TGTACGTGTGAATTATTGTAAGATCGT 59.244 33.333 0.00 0.00 0.00 3.73
2315 2339 9.225201 GTACGTGTGAATTATTGTAAGATCGTA 57.775 33.333 0.00 0.00 0.00 3.43
2316 2340 8.112099 ACGTGTGAATTATTGTAAGATCGTAC 57.888 34.615 11.40 11.40 0.00 3.67
2317 2341 7.972277 ACGTGTGAATTATTGTAAGATCGTACT 59.028 33.333 17.86 3.59 0.00 2.73
2318 2342 9.442033 CGTGTGAATTATTGTAAGATCGTACTA 57.558 33.333 17.86 11.93 0.00 1.82
2322 2346 9.459640 TGAATTATTGTAAGATCGTACTACTGC 57.540 33.333 17.86 4.72 0.00 4.40
2323 2347 8.503486 AATTATTGTAAGATCGTACTACTGCG 57.497 34.615 17.86 0.00 0.00 5.18
2324 2348 3.957671 TGTAAGATCGTACTACTGCGG 57.042 47.619 17.86 0.00 0.00 5.69
2325 2349 3.273434 TGTAAGATCGTACTACTGCGGT 58.727 45.455 17.86 2.42 0.00 5.68
2326 2350 3.310774 TGTAAGATCGTACTACTGCGGTC 59.689 47.826 17.86 0.00 38.39 4.79
2327 2351 2.034104 AGATCGTACTACTGCGGTCA 57.966 50.000 0.00 0.00 40.33 4.02
2328 2352 1.669779 AGATCGTACTACTGCGGTCAC 59.330 52.381 0.00 0.00 40.33 3.67
2329 2353 1.669779 GATCGTACTACTGCGGTCACT 59.330 52.381 0.00 0.00 38.05 3.41
2330 2354 1.527034 TCGTACTACTGCGGTCACTT 58.473 50.000 0.00 0.00 0.00 3.16
2331 2355 1.466167 TCGTACTACTGCGGTCACTTC 59.534 52.381 0.00 0.00 0.00 3.01
2332 2356 1.789410 CGTACTACTGCGGTCACTTCG 60.789 57.143 0.00 0.00 0.00 3.79
2339 2363 4.052229 CGGTCACTTCGCGGGAGT 62.052 66.667 6.13 8.37 0.00 3.85
2340 2364 2.693762 CGGTCACTTCGCGGGAGTA 61.694 63.158 6.13 0.00 0.00 2.59
2341 2365 1.588082 GGTCACTTCGCGGGAGTAA 59.412 57.895 6.13 0.00 0.00 2.24
2342 2366 0.175073 GGTCACTTCGCGGGAGTAAT 59.825 55.000 6.13 0.00 0.00 1.89
2343 2367 1.405121 GGTCACTTCGCGGGAGTAATT 60.405 52.381 6.13 0.00 0.00 1.40
2344 2368 2.344025 GTCACTTCGCGGGAGTAATTT 58.656 47.619 6.13 0.00 0.00 1.82
2345 2369 2.740447 GTCACTTCGCGGGAGTAATTTT 59.260 45.455 6.13 0.00 0.00 1.82
2346 2370 3.187842 GTCACTTCGCGGGAGTAATTTTT 59.812 43.478 6.13 0.00 0.00 1.94
2378 2402 9.512588 ACATCCTATCTATTCATTTCCAATCAC 57.487 33.333 0.00 0.00 0.00 3.06
2386 2410 8.647796 TCTATTCATTTCCAATCACGGTAGTAT 58.352 33.333 0.00 0.00 0.00 2.12
2451 2489 1.669779 ACCATCTAGCGACGACTACAC 59.330 52.381 0.00 0.00 0.00 2.90
2476 2527 3.282157 GCATGCCGCCATCATCGT 61.282 61.111 6.36 0.00 32.94 3.73
2539 2591 2.991190 GTCGGAAAGTCGTCATGCTAAA 59.009 45.455 0.00 0.00 0.00 1.85
2545 2598 0.725117 GTCGTCATGCTAAAACCCCG 59.275 55.000 0.00 0.00 0.00 5.73
2566 2620 1.961277 GGACCAGTGCACCAGAACG 60.961 63.158 14.63 0.00 0.00 3.95
2576 2630 2.280524 CCAGAACGACAACCGCCA 60.281 61.111 0.00 0.00 43.32 5.69
2577 2631 1.671054 CCAGAACGACAACCGCCAT 60.671 57.895 0.00 0.00 43.32 4.40
2607 2661 7.785028 TGAAGAGTAGCTTAGATTGGAAGGATA 59.215 37.037 0.00 0.00 36.83 2.59
2613 2667 5.191722 AGCTTAGATTGGAAGGATACAACCA 59.808 40.000 0.00 0.00 41.10 3.67
2644 2698 2.463653 CGAACGTAGACGAACGACAAAA 59.536 45.455 9.41 0.00 45.68 2.44
2660 2715 4.142816 CGACAAAAAGATCCGAGCAAATCT 60.143 41.667 0.00 0.00 33.67 2.40
2664 2719 2.802787 AGATCCGAGCAAATCTACCG 57.197 50.000 0.00 0.00 30.50 4.02
2682 2758 0.447801 CGAAAAACAGATCCGCCAGG 59.552 55.000 0.00 0.00 39.46 4.45
2702 2778 1.577328 GACACACCTTCACATGCCCG 61.577 60.000 0.00 0.00 0.00 6.13
2731 2807 0.687920 TTAGATGCACCACCGGAACA 59.312 50.000 9.46 0.00 0.00 3.18
2734 2810 2.463589 GATGCACCACCGGAACAGGA 62.464 60.000 9.46 0.00 34.73 3.86
2735 2811 2.668550 GCACCACCGGAACAGGAC 60.669 66.667 9.46 0.00 34.73 3.85
2739 2815 0.252558 ACCACCGGAACAGGACCTAT 60.253 55.000 9.46 0.00 34.73 2.57
2743 2819 1.672854 CCGGAACAGGACCTATGCGA 61.673 60.000 18.20 0.00 0.00 5.10
2852 2930 5.731678 ACATCTAAAAACAGGGTCCTCCTAT 59.268 40.000 0.00 0.00 46.12 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.903090 CTCCCTCTCAATATCCAGCTTCT 59.097 47.826 0.00 0.00 0.00 2.85
1 2 3.900601 TCTCCCTCTCAATATCCAGCTTC 59.099 47.826 0.00 0.00 0.00 3.86
2 3 3.933886 TCTCCCTCTCAATATCCAGCTT 58.066 45.455 0.00 0.00 0.00 3.74
3 4 3.627041 TCTCCCTCTCAATATCCAGCT 57.373 47.619 0.00 0.00 0.00 4.24
4 5 3.900601 TCTTCTCCCTCTCAATATCCAGC 59.099 47.826 0.00 0.00 0.00 4.85
5 6 5.105797 CGATCTTCTCCCTCTCAATATCCAG 60.106 48.000 0.00 0.00 0.00 3.86
6 7 4.769488 CGATCTTCTCCCTCTCAATATCCA 59.231 45.833 0.00 0.00 0.00 3.41
7 8 5.013547 TCGATCTTCTCCCTCTCAATATCC 58.986 45.833 0.00 0.00 0.00 2.59
8 9 5.710099 ACTCGATCTTCTCCCTCTCAATATC 59.290 44.000 0.00 0.00 0.00 1.63
9 10 5.640147 ACTCGATCTTCTCCCTCTCAATAT 58.360 41.667 0.00 0.00 0.00 1.28
10 11 5.055265 ACTCGATCTTCTCCCTCTCAATA 57.945 43.478 0.00 0.00 0.00 1.90
18 19 2.379972 TCTCCAACTCGATCTTCTCCC 58.620 52.381 0.00 0.00 0.00 4.30
49 50 2.721603 CTCGAGTTCCTATTTGATCGCG 59.278 50.000 3.62 0.00 0.00 5.87
50 51 3.966154 TCTCGAGTTCCTATTTGATCGC 58.034 45.455 13.13 0.00 0.00 4.58
51 52 4.979197 CCTTCTCGAGTTCCTATTTGATCG 59.021 45.833 13.13 0.00 0.00 3.69
61 62 4.451629 TGTATTGTCCTTCTCGAGTTCC 57.548 45.455 13.13 0.00 0.00 3.62
75 76 8.627403 CAAGCTCAATCTATCCAAATGTATTGT 58.373 33.333 0.00 0.00 0.00 2.71
79 80 6.484643 GCTCAAGCTCAATCTATCCAAATGTA 59.515 38.462 0.00 0.00 38.21 2.29
89 90 4.511527 CTTTCCTGCTCAAGCTCAATCTA 58.488 43.478 3.32 0.00 42.66 1.98
98 99 1.321474 TGCAACCTTTCCTGCTCAAG 58.679 50.000 0.00 0.00 39.38 3.02
104 105 1.701704 GCGAATTGCAACCTTTCCTG 58.298 50.000 0.00 0.00 45.45 3.86
125 126 2.203056 CGCATCCTTCGCATCCCA 60.203 61.111 0.00 0.00 0.00 4.37
133 134 3.873361 TCAACATGATCTTCGCATCCTTC 59.127 43.478 0.00 0.00 0.00 3.46
134 135 3.624861 GTCAACATGATCTTCGCATCCTT 59.375 43.478 0.00 0.00 0.00 3.36
135 136 3.201290 GTCAACATGATCTTCGCATCCT 58.799 45.455 0.00 0.00 0.00 3.24
141 142 1.583856 CGTCCGTCAACATGATCTTCG 59.416 52.381 0.00 0.00 0.00 3.79
147 148 1.504359 GGTTTCGTCCGTCAACATGA 58.496 50.000 0.00 0.00 0.00 3.07
154 155 0.589708 CCAAAAGGGTTTCGTCCGTC 59.410 55.000 0.00 0.00 0.00 4.79
155 156 0.180878 TCCAAAAGGGTTTCGTCCGT 59.819 50.000 0.00 0.00 38.11 4.69
156 157 1.199097 CATCCAAAAGGGTTTCGTCCG 59.801 52.381 0.00 0.00 38.11 4.79
179 180 5.300034 TCCATAAGCCACTTCTTTGCATATG 59.700 40.000 0.00 0.00 36.78 1.78
180 181 5.448654 TCCATAAGCCACTTCTTTGCATAT 58.551 37.500 0.00 0.00 0.00 1.78
199 200 6.325028 TCGTTGATCTCCTTCTTCTTATCCAT 59.675 38.462 0.00 0.00 0.00 3.41
200 201 5.656859 TCGTTGATCTCCTTCTTCTTATCCA 59.343 40.000 0.00 0.00 0.00 3.41
207 208 2.189342 CGCTCGTTGATCTCCTTCTTC 58.811 52.381 0.00 0.00 0.00 2.87
208 209 1.546476 ACGCTCGTTGATCTCCTTCTT 59.454 47.619 0.00 0.00 0.00 2.52
209 210 1.178276 ACGCTCGTTGATCTCCTTCT 58.822 50.000 0.00 0.00 0.00 2.85
210 211 2.541999 CCTACGCTCGTTGATCTCCTTC 60.542 54.545 0.00 0.00 0.00 3.46
219 220 0.247974 CGTACTCCCTACGCTCGTTG 60.248 60.000 0.00 0.00 41.81 4.10
254 256 3.848301 ATGCTTCGCCACTGCCACA 62.848 57.895 0.00 0.00 0.00 4.17
256 258 3.057548 CATGCTTCGCCACTGCCA 61.058 61.111 0.00 0.00 0.00 4.92
261 263 3.271706 TTGCTGCATGCTTCGCCAC 62.272 57.895 20.33 0.99 43.37 5.01
262 264 2.984718 TTGCTGCATGCTTCGCCA 60.985 55.556 20.33 7.96 43.37 5.69
263 265 2.202570 CTTGCTGCATGCTTCGCC 60.203 61.111 20.33 3.14 43.37 5.54
265 267 0.248498 CATCCTTGCTGCATGCTTCG 60.248 55.000 20.33 8.48 43.37 3.79
266 268 0.527817 GCATCCTTGCTGCATGCTTC 60.528 55.000 20.33 10.87 45.77 3.86
267 269 1.515954 GCATCCTTGCTGCATGCTT 59.484 52.632 20.33 1.62 45.77 3.91
286 288 4.778143 GGTTGTCCCGCTCGGCAT 62.778 66.667 2.18 0.00 0.00 4.40
298 300 2.360350 CGCCTGCATCTGGGTTGT 60.360 61.111 0.00 0.00 0.00 3.32
299 301 3.136123 CCGCCTGCATCTGGGTTG 61.136 66.667 0.00 0.00 0.00 3.77
300 302 3.329889 TCCGCCTGCATCTGGGTT 61.330 61.111 0.00 0.00 0.00 4.11
301 303 3.790437 CTCCGCCTGCATCTGGGT 61.790 66.667 0.00 0.00 0.00 4.51
303 305 4.478371 TGCTCCGCCTGCATCTGG 62.478 66.667 0.00 0.00 35.31 3.86
304 306 2.895865 CTGCTCCGCCTGCATCTG 60.896 66.667 0.00 0.00 39.86 2.90
305 307 4.172512 CCTGCTCCGCCTGCATCT 62.173 66.667 0.00 0.00 39.86 2.90
321 323 1.177256 CCAAGGCCATGCTAGCATCC 61.177 60.000 27.34 24.41 33.90 3.51
363 365 2.805353 CTCCGTCCGTGCTTGTCG 60.805 66.667 0.00 0.00 0.00 4.35
370 372 0.866061 CAATCGTAGCTCCGTCCGTG 60.866 60.000 0.00 0.00 0.00 4.94
371 373 1.028330 TCAATCGTAGCTCCGTCCGT 61.028 55.000 0.00 0.00 0.00 4.69
372 374 0.317103 CTCAATCGTAGCTCCGTCCG 60.317 60.000 0.00 0.00 0.00 4.79
373 375 0.595310 GCTCAATCGTAGCTCCGTCC 60.595 60.000 0.00 0.00 37.01 4.79
374 376 0.595310 GGCTCAATCGTAGCTCCGTC 60.595 60.000 0.00 0.00 39.97 4.79
375 377 1.320344 TGGCTCAATCGTAGCTCCGT 61.320 55.000 0.00 0.00 39.97 4.69
376 378 0.872021 GTGGCTCAATCGTAGCTCCG 60.872 60.000 0.00 0.00 39.97 4.63
377 379 0.872021 CGTGGCTCAATCGTAGCTCC 60.872 60.000 0.00 0.00 39.97 4.70
378 380 1.483424 GCGTGGCTCAATCGTAGCTC 61.483 60.000 0.00 0.00 39.97 4.09
379 381 1.519455 GCGTGGCTCAATCGTAGCT 60.519 57.895 0.00 0.00 39.97 3.32
380 382 2.526120 GGCGTGGCTCAATCGTAGC 61.526 63.158 0.00 0.00 39.33 3.58
381 383 1.883084 GGGCGTGGCTCAATCGTAG 60.883 63.158 0.00 0.00 0.00 3.51
382 384 2.185867 GGGCGTGGCTCAATCGTA 59.814 61.111 0.00 0.00 0.00 3.43
383 385 4.778143 GGGGCGTGGCTCAATCGT 62.778 66.667 0.00 0.00 0.00 3.73
384 386 4.776322 TGGGGCGTGGCTCAATCG 62.776 66.667 0.00 0.00 0.00 3.34
385 387 2.825836 CTGGGGCGTGGCTCAATC 60.826 66.667 0.00 0.00 0.00 2.67
386 388 4.431131 CCTGGGGCGTGGCTCAAT 62.431 66.667 0.00 0.00 0.00 2.57
404 406 1.689233 TACTGTAGCAGGCCTGGGG 60.689 63.158 33.46 9.79 35.51 4.96
405 407 1.522569 GTACTGTAGCAGGCCTGGG 59.477 63.158 33.46 10.63 35.51 4.45
406 408 1.141881 CGTACTGTAGCAGGCCTGG 59.858 63.158 33.46 18.83 35.51 4.45
407 409 1.519455 GCGTACTGTAGCAGGCCTG 60.519 63.158 29.34 29.34 35.51 4.85
408 410 1.541310 TTGCGTACTGTAGCAGGCCT 61.541 55.000 0.00 0.00 44.72 5.19
409 411 1.079405 TTGCGTACTGTAGCAGGCC 60.079 57.895 0.00 0.00 44.72 5.19
410 412 1.683790 CGTTGCGTACTGTAGCAGGC 61.684 60.000 10.35 0.82 44.72 4.85
411 413 1.076533 CCGTTGCGTACTGTAGCAGG 61.077 60.000 10.35 7.26 44.72 4.85
412 414 0.388134 ACCGTTGCGTACTGTAGCAG 60.388 55.000 10.35 0.00 44.72 4.24
413 415 0.665068 CACCGTTGCGTACTGTAGCA 60.665 55.000 7.54 7.54 42.15 3.49
414 416 0.665369 ACACCGTTGCGTACTGTAGC 60.665 55.000 0.00 0.00 0.00 3.58
415 417 1.454276 CAACACCGTTGCGTACTGTAG 59.546 52.381 0.00 0.00 0.00 2.74
416 418 1.489574 CAACACCGTTGCGTACTGTA 58.510 50.000 0.00 0.00 0.00 2.74
417 419 1.768112 GCAACACCGTTGCGTACTGT 61.768 55.000 15.30 0.00 35.58 3.55
418 420 1.083015 GCAACACCGTTGCGTACTG 60.083 57.895 15.30 0.00 35.58 2.74
419 421 3.326109 GCAACACCGTTGCGTACT 58.674 55.556 15.30 0.00 35.58 2.73
431 433 0.752009 TTTTGGGCCGTGTAGCAACA 60.752 50.000 0.00 0.00 0.00 3.33
432 434 0.601057 ATTTTGGGCCGTGTAGCAAC 59.399 50.000 0.00 0.00 0.00 4.17
433 435 0.600557 CATTTTGGGCCGTGTAGCAA 59.399 50.000 0.00 0.00 0.00 3.91
434 436 1.872197 GCATTTTGGGCCGTGTAGCA 61.872 55.000 0.00 0.00 0.00 3.49
435 437 1.153842 GCATTTTGGGCCGTGTAGC 60.154 57.895 0.00 0.00 0.00 3.58
436 438 1.510844 GGCATTTTGGGCCGTGTAG 59.489 57.895 0.00 0.00 42.39 2.74
437 439 3.688086 GGCATTTTGGGCCGTGTA 58.312 55.556 0.00 0.00 42.39 2.90
443 445 3.699038 TCAGTTACTATGGCATTTTGGGC 59.301 43.478 4.78 0.00 0.00 5.36
444 446 5.418840 ACTTCAGTTACTATGGCATTTTGGG 59.581 40.000 4.78 0.00 0.00 4.12
445 447 6.515272 ACTTCAGTTACTATGGCATTTTGG 57.485 37.500 4.78 0.00 0.00 3.28
446 448 8.677300 ACATACTTCAGTTACTATGGCATTTTG 58.323 33.333 4.78 0.00 0.00 2.44
447 449 8.807948 ACATACTTCAGTTACTATGGCATTTT 57.192 30.769 4.78 0.00 0.00 1.82
451 453 9.899661 AAAATACATACTTCAGTTACTATGGCA 57.100 29.630 0.00 0.00 0.00 4.92
456 458 8.865978 CGTGCAAAATACATACTTCAGTTACTA 58.134 33.333 0.00 0.00 0.00 1.82
457 459 7.623506 GCGTGCAAAATACATACTTCAGTTACT 60.624 37.037 0.00 0.00 0.00 2.24
458 460 6.464834 GCGTGCAAAATACATACTTCAGTTAC 59.535 38.462 0.00 0.00 0.00 2.50
459 461 6.402766 GGCGTGCAAAATACATACTTCAGTTA 60.403 38.462 0.00 0.00 0.00 2.24
460 462 5.390613 GCGTGCAAAATACATACTTCAGTT 58.609 37.500 0.00 0.00 0.00 3.16
461 463 4.142687 GGCGTGCAAAATACATACTTCAGT 60.143 41.667 0.00 0.00 0.00 3.41
462 464 4.342772 GGCGTGCAAAATACATACTTCAG 58.657 43.478 0.00 0.00 0.00 3.02
463 465 3.127895 GGGCGTGCAAAATACATACTTCA 59.872 43.478 0.00 0.00 0.00 3.02
464 466 3.488553 GGGGCGTGCAAAATACATACTTC 60.489 47.826 0.00 0.00 0.00 3.01
465 467 2.425668 GGGGCGTGCAAAATACATACTT 59.574 45.455 0.00 0.00 0.00 2.24
466 468 2.021457 GGGGCGTGCAAAATACATACT 58.979 47.619 0.00 0.00 0.00 2.12
467 469 1.746220 TGGGGCGTGCAAAATACATAC 59.254 47.619 0.00 0.00 0.00 2.39
468 470 2.020720 CTGGGGCGTGCAAAATACATA 58.979 47.619 0.00 0.00 0.00 2.29
469 471 0.817013 CTGGGGCGTGCAAAATACAT 59.183 50.000 0.00 0.00 0.00 2.29
470 472 1.247419 CCTGGGGCGTGCAAAATACA 61.247 55.000 0.00 0.00 0.00 2.29
471 473 1.510844 CCTGGGGCGTGCAAAATAC 59.489 57.895 0.00 0.00 0.00 1.89
472 474 2.347322 GCCTGGGGCGTGCAAAATA 61.347 57.895 0.00 0.00 39.62 1.40
473 475 3.694538 GCCTGGGGCGTGCAAAAT 61.695 61.111 0.00 0.00 39.62 1.82
505 507 2.534990 GGATCTAGGACCCAGATCAGG 58.465 57.143 25.44 0.00 46.84 3.86
506 508 2.166829 CGGATCTAGGACCCAGATCAG 58.833 57.143 25.44 19.81 46.84 2.90
507 509 1.823648 GCGGATCTAGGACCCAGATCA 60.824 57.143 25.44 0.00 46.84 2.92
508 510 0.892063 GCGGATCTAGGACCCAGATC 59.108 60.000 18.69 18.69 45.12 2.75
509 511 0.543174 GGCGGATCTAGGACCCAGAT 60.543 60.000 1.59 1.59 35.43 2.90
510 512 1.152525 GGCGGATCTAGGACCCAGA 60.153 63.158 0.00 0.00 0.00 3.86
511 513 1.457643 TGGCGGATCTAGGACCCAG 60.458 63.158 0.00 0.00 0.00 4.45
512 514 1.760875 GTGGCGGATCTAGGACCCA 60.761 63.158 0.00 0.00 0.00 4.51
513 515 0.178970 TAGTGGCGGATCTAGGACCC 60.179 60.000 0.00 0.00 0.00 4.46
514 516 0.960286 GTAGTGGCGGATCTAGGACC 59.040 60.000 0.00 0.00 0.00 4.46
515 517 0.960286 GGTAGTGGCGGATCTAGGAC 59.040 60.000 0.00 0.00 0.00 3.85
516 518 0.554305 TGGTAGTGGCGGATCTAGGA 59.446 55.000 0.00 0.00 0.00 2.94
517 519 1.068741 GTTGGTAGTGGCGGATCTAGG 59.931 57.143 0.00 0.00 0.00 3.02
518 520 1.754803 TGTTGGTAGTGGCGGATCTAG 59.245 52.381 0.00 0.00 0.00 2.43
519 521 1.855295 TGTTGGTAGTGGCGGATCTA 58.145 50.000 0.00 0.00 0.00 1.98
520 522 0.981183 TTGTTGGTAGTGGCGGATCT 59.019 50.000 0.00 0.00 0.00 2.75
521 523 1.338769 ACTTGTTGGTAGTGGCGGATC 60.339 52.381 0.00 0.00 0.00 3.36
522 524 0.690762 ACTTGTTGGTAGTGGCGGAT 59.309 50.000 0.00 0.00 0.00 4.18
523 525 0.250124 CACTTGTTGGTAGTGGCGGA 60.250 55.000 0.00 0.00 39.42 5.54
524 526 0.250124 TCACTTGTTGGTAGTGGCGG 60.250 55.000 0.00 0.00 42.53 6.13
525 527 1.808411 ATCACTTGTTGGTAGTGGCG 58.192 50.000 0.00 0.00 42.53 5.69
526 528 2.671396 CGTATCACTTGTTGGTAGTGGC 59.329 50.000 0.00 0.00 42.53 5.01
527 529 3.259064 CCGTATCACTTGTTGGTAGTGG 58.741 50.000 0.00 0.00 42.53 4.00
528 530 2.671396 GCCGTATCACTTGTTGGTAGTG 59.329 50.000 0.00 0.00 43.41 2.74
529 531 2.300723 TGCCGTATCACTTGTTGGTAGT 59.699 45.455 0.00 0.00 0.00 2.73
530 532 2.967362 TGCCGTATCACTTGTTGGTAG 58.033 47.619 0.00 0.00 0.00 3.18
531 533 3.620427 ATGCCGTATCACTTGTTGGTA 57.380 42.857 0.00 0.00 0.00 3.25
532 534 2.489938 ATGCCGTATCACTTGTTGGT 57.510 45.000 0.00 0.00 0.00 3.67
533 535 2.284150 CGTATGCCGTATCACTTGTTGG 59.716 50.000 0.00 0.00 0.00 3.77
534 536 2.284150 CCGTATGCCGTATCACTTGTTG 59.716 50.000 0.00 0.00 33.66 3.33
535 537 2.546778 CCGTATGCCGTATCACTTGTT 58.453 47.619 0.00 0.00 33.66 2.83
536 538 1.805120 GCCGTATGCCGTATCACTTGT 60.805 52.381 0.00 0.00 33.66 3.16
537 539 0.859232 GCCGTATGCCGTATCACTTG 59.141 55.000 0.00 0.00 33.66 3.16
538 540 0.462375 TGCCGTATGCCGTATCACTT 59.538 50.000 0.00 0.00 40.16 3.16
539 541 0.462375 TTGCCGTATGCCGTATCACT 59.538 50.000 0.00 0.00 40.16 3.41
540 542 0.859232 CTTGCCGTATGCCGTATCAC 59.141 55.000 0.00 0.00 40.16 3.06
541 543 0.878523 GCTTGCCGTATGCCGTATCA 60.879 55.000 0.00 0.00 40.16 2.15
542 544 1.860078 GCTTGCCGTATGCCGTATC 59.140 57.895 0.00 0.00 40.16 2.24
543 545 1.954146 CGCTTGCCGTATGCCGTAT 60.954 57.895 0.00 0.00 40.16 3.06
544 546 2.583868 CGCTTGCCGTATGCCGTA 60.584 61.111 0.00 0.00 40.16 4.02
545 547 4.444838 TCGCTTGCCGTATGCCGT 62.445 61.111 0.00 0.00 40.16 5.68
546 548 3.630148 CTCGCTTGCCGTATGCCG 61.630 66.667 0.00 0.00 40.16 5.69
547 549 2.511600 ACTCGCTTGCCGTATGCC 60.512 61.111 0.00 0.00 40.16 4.40
548 550 1.154205 ATGACTCGCTTGCCGTATGC 61.154 55.000 0.00 0.00 41.77 3.14
549 551 0.855349 GATGACTCGCTTGCCGTATG 59.145 55.000 0.00 0.00 38.35 2.39
552 554 1.446792 CAGATGACTCGCTTGCCGT 60.447 57.895 0.00 0.00 38.35 5.68
561 563 2.924290 GTCCAAGCGTAACAGATGACTC 59.076 50.000 0.00 0.00 0.00 3.36
562 564 2.299013 TGTCCAAGCGTAACAGATGACT 59.701 45.455 0.00 0.00 0.00 3.41
564 566 3.261580 CATGTCCAAGCGTAACAGATGA 58.738 45.455 0.00 0.00 0.00 2.92
569 571 2.779755 ATCCATGTCCAAGCGTAACA 57.220 45.000 0.00 0.00 0.00 2.41
572 574 3.342377 TGAAATCCATGTCCAAGCGTA 57.658 42.857 0.00 0.00 0.00 4.42
574 576 3.788333 ATTGAAATCCATGTCCAAGCG 57.212 42.857 0.00 0.00 0.00 4.68
578 580 3.581770 TGCCAAATTGAAATCCATGTCCA 59.418 39.130 0.00 0.00 0.00 4.02
586 588 4.476628 AGGGACATGCCAAATTGAAATC 57.523 40.909 8.20 0.00 38.95 2.17
589 591 4.141528 ACAAAAGGGACATGCCAAATTGAA 60.142 37.500 16.29 0.00 38.95 2.69
591 593 3.742385 ACAAAAGGGACATGCCAAATTG 58.258 40.909 8.20 10.25 38.95 2.32
593 595 5.559148 TTAACAAAAGGGACATGCCAAAT 57.441 34.783 8.20 0.00 38.95 2.32
598 600 9.869757 AATAATAGTTTAACAAAAGGGACATGC 57.130 29.630 0.00 0.00 0.00 4.06
653 660 8.724153 CACGTCGATCATACAATGTAAAAATTG 58.276 33.333 0.00 0.00 42.21 2.32
659 666 7.419204 TCATACACGTCGATCATACAATGTAA 58.581 34.615 0.00 0.00 0.00 2.41
662 669 6.747659 TTCATACACGTCGATCATACAATG 57.252 37.500 0.00 0.00 0.00 2.82
663 670 6.305638 CGATTCATACACGTCGATCATACAAT 59.694 38.462 0.00 0.00 36.25 2.71
664 671 5.623673 CGATTCATACACGTCGATCATACAA 59.376 40.000 0.00 0.00 36.25 2.41
665 672 5.144359 CGATTCATACACGTCGATCATACA 58.856 41.667 0.00 0.00 36.25 2.29
673 680 3.880610 TCCATACGATTCATACACGTCG 58.119 45.455 0.00 0.00 40.61 5.12
675 682 8.651391 TTTAAATCCATACGATTCATACACGT 57.349 30.769 0.00 0.00 40.47 4.49
693 700 7.807907 CGTGCCCTAAATGTGGATATTTAAATC 59.192 37.037 3.39 0.00 33.48 2.17
698 705 4.338118 CACGTGCCCTAAATGTGGATATTT 59.662 41.667 0.82 0.00 34.78 1.40
701 708 2.912771 CACGTGCCCTAAATGTGGATA 58.087 47.619 0.82 0.00 32.06 2.59
705 712 1.401552 CATCCACGTGCCCTAAATGTG 59.598 52.381 10.91 0.00 34.87 3.21
706 713 1.004277 ACATCCACGTGCCCTAAATGT 59.996 47.619 10.91 9.15 0.00 2.71
716 723 1.365368 TATTGCCGCACATCCACGTG 61.365 55.000 9.08 9.08 40.00 4.49
718 725 0.041047 CATATTGCCGCACATCCACG 60.041 55.000 0.00 0.00 0.00 4.94
719 726 1.265095 CTCATATTGCCGCACATCCAC 59.735 52.381 0.00 0.00 0.00 4.02
722 729 1.882912 TCCTCATATTGCCGCACATC 58.117 50.000 0.00 0.00 0.00 3.06
725 732 1.331756 CAGTTCCTCATATTGCCGCAC 59.668 52.381 0.00 0.00 0.00 5.34
728 735 2.332063 ACCAGTTCCTCATATTGCCG 57.668 50.000 0.00 0.00 0.00 5.69
731 738 6.049149 ACATCGTAACCAGTTCCTCATATTG 58.951 40.000 0.00 0.00 0.00 1.90
736 743 3.162666 AGACATCGTAACCAGTTCCTCA 58.837 45.455 0.00 0.00 0.00 3.86
741 748 5.867716 GTGTTCATAGACATCGTAACCAGTT 59.132 40.000 0.00 0.00 0.00 3.16
742 749 5.408356 GTGTTCATAGACATCGTAACCAGT 58.592 41.667 0.00 0.00 0.00 4.00
743 750 4.499399 CGTGTTCATAGACATCGTAACCAG 59.501 45.833 0.00 0.00 0.00 4.00
744 751 4.417506 CGTGTTCATAGACATCGTAACCA 58.582 43.478 0.00 0.00 0.00 3.67
745 752 3.242248 GCGTGTTCATAGACATCGTAACC 59.758 47.826 0.00 0.00 31.46 2.85
747 754 3.441163 GGCGTGTTCATAGACATCGTAA 58.559 45.455 0.00 0.00 31.46 3.18
748 755 2.223641 GGGCGTGTTCATAGACATCGTA 60.224 50.000 0.00 0.00 31.46 3.43
749 756 1.470979 GGGCGTGTTCATAGACATCGT 60.471 52.381 0.00 0.00 31.46 3.73
750 757 1.209128 GGGCGTGTTCATAGACATCG 58.791 55.000 0.00 0.00 0.00 3.84
751 758 1.209128 CGGGCGTGTTCATAGACATC 58.791 55.000 0.00 0.00 0.00 3.06
753 760 1.447140 GCGGGCGTGTTCATAGACA 60.447 57.895 0.00 0.00 0.00 3.41
754 761 1.421410 CTGCGGGCGTGTTCATAGAC 61.421 60.000 0.00 0.00 0.00 2.59
755 762 1.153647 CTGCGGGCGTGTTCATAGA 60.154 57.895 0.00 0.00 0.00 1.98
756 763 2.173669 CCTGCGGGCGTGTTCATAG 61.174 63.158 0.00 0.00 0.00 2.23
757 764 2.125310 CCTGCGGGCGTGTTCATA 60.125 61.111 0.00 0.00 0.00 2.15
758 765 4.329545 ACCTGCGGGCGTGTTCAT 62.330 61.111 12.89 0.00 35.63 2.57
760 767 3.750077 TATACACCTGCGGGCGTGTTC 62.750 57.143 15.73 0.00 40.24 3.18
763 770 1.591594 CTATACACCTGCGGGCGTG 60.592 63.158 15.73 8.08 35.63 5.34
764 771 1.735376 CTCTATACACCTGCGGGCGT 61.735 60.000 12.89 11.69 35.63 5.68
765 772 1.007271 CTCTATACACCTGCGGGCG 60.007 63.158 12.89 4.24 35.63 6.13
766 773 0.315568 CTCTCTATACACCTGCGGGC 59.684 60.000 12.89 0.00 35.63 6.13
770 777 4.946478 AATCCACTCTCTATACACCTGC 57.054 45.455 0.00 0.00 0.00 4.85
771 778 5.053145 GCAAATCCACTCTCTATACACCTG 58.947 45.833 0.00 0.00 0.00 4.00
772 779 4.101741 GGCAAATCCACTCTCTATACACCT 59.898 45.833 0.00 0.00 34.01 4.00
773 780 4.141711 TGGCAAATCCACTCTCTATACACC 60.142 45.833 0.00 0.00 40.72 4.16
774 781 5.023533 TGGCAAATCCACTCTCTATACAC 57.976 43.478 0.00 0.00 40.72 2.90
787 794 1.181786 TTTCCGGACATGGCAAATCC 58.818 50.000 1.83 9.75 0.00 3.01
788 795 2.426738 TCATTTCCGGACATGGCAAATC 59.573 45.455 26.31 0.00 0.00 2.17
789 796 2.166254 GTCATTTCCGGACATGGCAAAT 59.834 45.455 26.37 9.64 35.36 2.32
790 797 1.543802 GTCATTTCCGGACATGGCAAA 59.456 47.619 26.37 7.60 35.36 3.68
791 798 1.173043 GTCATTTCCGGACATGGCAA 58.827 50.000 26.37 8.35 35.36 4.52
792 799 1.024046 CGTCATTTCCGGACATGGCA 61.024 55.000 29.21 11.24 34.97 4.92
793 800 1.024579 ACGTCATTTCCGGACATGGC 61.025 55.000 26.31 24.49 34.97 4.40
794 801 0.726827 CACGTCATTTCCGGACATGG 59.273 55.000 26.31 15.77 34.97 3.66
795 802 1.128507 CACACGTCATTTCCGGACATG 59.871 52.381 22.22 22.22 34.84 3.21
796 803 1.438651 CACACGTCATTTCCGGACAT 58.561 50.000 1.83 0.00 34.97 3.06
797 804 0.601576 CCACACGTCATTTCCGGACA 60.602 55.000 1.83 0.00 34.97 4.02
798 805 0.320073 TCCACACGTCATTTCCGGAC 60.320 55.000 1.83 0.00 0.00 4.79
799 806 0.611200 ATCCACACGTCATTTCCGGA 59.389 50.000 0.00 0.00 0.00 5.14
800 807 1.006832 GATCCACACGTCATTTCCGG 58.993 55.000 0.00 0.00 0.00 5.14
801 808 1.006832 GGATCCACACGTCATTTCCG 58.993 55.000 6.95 0.00 0.00 4.30
802 809 1.737793 GTGGATCCACACGTCATTTCC 59.262 52.381 35.21 7.39 45.53 3.13
811 818 1.659098 GTCGAAATCGTGGATCCACAC 59.341 52.381 37.42 24.71 46.47 3.82
812 819 1.548719 AGTCGAAATCGTGGATCCACA 59.451 47.619 37.42 26.52 46.47 4.17
813 820 1.927174 CAGTCGAAATCGTGGATCCAC 59.073 52.381 31.59 31.59 43.01 4.02
814 821 1.548719 ACAGTCGAAATCGTGGATCCA 59.451 47.619 11.44 11.44 40.80 3.41
828 835 0.249120 TTGATACAGGGGCACAGTCG 59.751 55.000 0.00 0.00 0.00 4.18
838 845 3.627577 GTGTGGCCTTACATTGATACAGG 59.372 47.826 3.32 0.00 32.43 4.00
842 855 3.266636 CACGTGTGGCCTTACATTGATA 58.733 45.455 7.58 0.00 32.43 2.15
846 859 1.975660 AACACGTGTGGCCTTACATT 58.024 45.000 24.16 0.00 32.43 2.71
875 888 5.642063 CGTGTCTATGGGAACTTGTGTAAAT 59.358 40.000 0.00 0.00 0.00 1.40
897 910 3.866379 TTGGAGGGCAATGCAGCGT 62.866 57.895 7.79 0.00 34.64 5.07
922 935 6.494893 TTGCAGGACATTTATACACACTTC 57.505 37.500 0.00 0.00 0.00 3.01
938 951 3.573967 GTGGGAAATCTCTTTTTGCAGGA 59.426 43.478 0.00 0.00 0.00 3.86
942 955 4.221482 AGATGGTGGGAAATCTCTTTTTGC 59.779 41.667 0.00 0.00 0.00 3.68
972 985 1.748500 GGGCAGCTTTGGAGAGAGC 60.749 63.158 0.00 0.00 39.17 4.09
1251 1264 2.509916 GGGAGCAGCATGAGGAGG 59.490 66.667 0.00 0.00 39.69 4.30
1557 1570 2.287909 GCTGTTTTTGTTACCATCGCCA 60.288 45.455 0.00 0.00 0.00 5.69
1905 1918 2.660612 CCAAACGCACGTCCCGTAC 61.661 63.158 10.72 0.00 38.32 3.67
1934 1947 1.304547 AGAGTGGAGACCGGGACAG 60.305 63.158 6.32 0.00 0.00 3.51
1946 1959 2.037772 AGTACTTGCAACTGGAGAGTGG 59.962 50.000 0.00 0.00 30.61 4.00
1947 1960 3.062763 CAGTACTTGCAACTGGAGAGTG 58.937 50.000 8.84 0.00 40.56 3.51
1948 1961 3.393089 CAGTACTTGCAACTGGAGAGT 57.607 47.619 8.84 0.00 40.56 3.24
2062 2079 7.914346 CCCTAATTACGAGTATACATTCGATCC 59.086 40.741 18.24 0.00 39.93 3.36
2086 2103 2.820059 TGATACGTCATGATGAGCCC 57.180 50.000 21.75 7.91 0.00 5.19
2098 2115 5.801444 CACATTTTGCATTGTGATGATACGT 59.199 36.000 15.96 0.00 44.74 3.57
2118 2135 5.596772 AGCTAACACAAAACTAAACCCACAT 59.403 36.000 0.00 0.00 0.00 3.21
2162 2186 0.616964 ACCTACCTTCTCCCCCGAAC 60.617 60.000 0.00 0.00 0.00 3.95
2167 2191 2.237643 GACGATACCTACCTTCTCCCC 58.762 57.143 0.00 0.00 0.00 4.81
2176 2200 2.028883 GCTGCAAAACGACGATACCTAC 59.971 50.000 0.00 0.00 0.00 3.18
2199 2223 4.398319 AGAAGCCTAAAAAGCAGCAACTA 58.602 39.130 0.00 0.00 0.00 2.24
2201 2225 3.650070 AGAAGCCTAAAAAGCAGCAAC 57.350 42.857 0.00 0.00 0.00 4.17
2221 2245 1.594194 GGCGCCAACATCATCACCAA 61.594 55.000 24.80 0.00 0.00 3.67
2287 2311 8.752254 CGATCTTACAATAATTCACACGTACAT 58.248 33.333 0.00 0.00 0.00 2.29
2288 2312 7.756272 ACGATCTTACAATAATTCACACGTACA 59.244 33.333 0.00 0.00 0.00 2.90
2289 2313 8.112099 ACGATCTTACAATAATTCACACGTAC 57.888 34.615 0.00 0.00 0.00 3.67
2290 2314 9.225201 GTACGATCTTACAATAATTCACACGTA 57.775 33.333 4.57 0.00 0.00 3.57
2291 2315 7.972277 AGTACGATCTTACAATAATTCACACGT 59.028 33.333 11.54 0.00 0.00 4.49
2292 2316 8.336498 AGTACGATCTTACAATAATTCACACG 57.664 34.615 11.54 0.00 0.00 4.49
2296 2320 9.459640 GCAGTAGTACGATCTTACAATAATTCA 57.540 33.333 11.54 0.00 0.00 2.57
2297 2321 8.628279 CGCAGTAGTACGATCTTACAATAATTC 58.372 37.037 11.54 0.00 0.00 2.17
2298 2322 7.594015 CCGCAGTAGTACGATCTTACAATAATT 59.406 37.037 11.54 0.00 0.00 1.40
2299 2323 7.082602 CCGCAGTAGTACGATCTTACAATAAT 58.917 38.462 11.54 0.00 0.00 1.28
2300 2324 6.038603 ACCGCAGTAGTACGATCTTACAATAA 59.961 38.462 11.54 0.00 0.00 1.40
2301 2325 5.528690 ACCGCAGTAGTACGATCTTACAATA 59.471 40.000 11.54 0.00 0.00 1.90
2302 2326 4.337555 ACCGCAGTAGTACGATCTTACAAT 59.662 41.667 11.54 0.00 0.00 2.71
2303 2327 3.691118 ACCGCAGTAGTACGATCTTACAA 59.309 43.478 11.54 0.00 0.00 2.41
2304 2328 3.273434 ACCGCAGTAGTACGATCTTACA 58.727 45.455 11.54 0.00 0.00 2.41
2305 2329 3.310774 TGACCGCAGTAGTACGATCTTAC 59.689 47.826 1.16 1.16 0.00 2.34
2306 2330 3.310774 GTGACCGCAGTAGTACGATCTTA 59.689 47.826 0.00 0.00 0.00 2.10
2307 2331 2.097142 GTGACCGCAGTAGTACGATCTT 59.903 50.000 0.00 0.00 0.00 2.40
2308 2332 1.669779 GTGACCGCAGTAGTACGATCT 59.330 52.381 0.00 0.00 0.00 2.75
2309 2333 1.669779 AGTGACCGCAGTAGTACGATC 59.330 52.381 0.00 0.00 0.00 3.69
2310 2334 1.747709 AGTGACCGCAGTAGTACGAT 58.252 50.000 0.00 0.00 0.00 3.73
2311 2335 1.466167 GAAGTGACCGCAGTAGTACGA 59.534 52.381 0.00 0.00 0.00 3.43
2312 2336 1.789410 CGAAGTGACCGCAGTAGTACG 60.789 57.143 0.00 0.00 0.00 3.67
2313 2337 1.892468 CGAAGTGACCGCAGTAGTAC 58.108 55.000 0.00 0.00 0.00 2.73
2322 2346 2.203972 TTACTCCCGCGAAGTGACCG 62.204 60.000 20.09 0.00 43.07 4.79
2323 2347 0.175073 ATTACTCCCGCGAAGTGACC 59.825 55.000 20.09 0.00 43.07 4.02
2324 2348 2.005971 AATTACTCCCGCGAAGTGAC 57.994 50.000 20.09 0.00 43.07 3.67
2325 2349 2.754946 AAATTACTCCCGCGAAGTGA 57.245 45.000 20.09 14.29 43.07 3.41
2326 2350 3.824414 AAAAATTACTCCCGCGAAGTG 57.176 42.857 20.09 9.77 38.04 3.16
2358 2382 8.647796 ACTACCGTGATTGGAAATGAATAGATA 58.352 33.333 0.00 0.00 0.00 1.98
2371 2395 5.342433 TGTTCGTTATACTACCGTGATTGG 58.658 41.667 0.00 0.00 0.00 3.16
2416 2440 7.611855 TCGCTAGATGGTCTATGAATCTGAATA 59.388 37.037 0.00 0.00 32.92 1.75
2462 2512 4.545706 GGGACGATGATGGCGGCA 62.546 66.667 16.34 16.34 38.88 5.69
2496 2547 5.671493 ACTGTCTACTACAACAAGTTTGCT 58.329 37.500 0.00 0.00 37.74 3.91
2539 2591 3.566210 CACTGGTCCCACGGGGTT 61.566 66.667 1.28 0.00 44.74 4.11
2545 2598 2.281761 CTGGTGCACTGGTCCCAC 60.282 66.667 17.98 0.00 0.00 4.61
2566 2620 0.652592 CTTCATCGATGGCGGTTGTC 59.347 55.000 24.61 0.00 38.28 3.18
2576 2630 6.491745 TCCAATCTAAGCTACTCTTCATCGAT 59.508 38.462 0.00 0.00 36.25 3.59
2577 2631 5.828328 TCCAATCTAAGCTACTCTTCATCGA 59.172 40.000 0.00 0.00 36.25 3.59
2607 2661 2.277084 GTTCGTGTGTCTTCTGGTTGT 58.723 47.619 0.00 0.00 0.00 3.32
2613 2667 2.349249 CGTCTACGTTCGTGTGTCTTCT 60.349 50.000 8.14 0.00 34.11 2.85
2644 2698 2.693591 TCGGTAGATTTGCTCGGATCTT 59.306 45.455 0.00 0.00 34.60 2.40
2660 2715 1.002201 TGGCGGATCTGTTTTTCGGTA 59.998 47.619 2.89 0.00 0.00 4.02
2664 2719 0.811281 CCCTGGCGGATCTGTTTTTC 59.189 55.000 2.89 0.00 0.00 2.29
2682 2758 1.244019 GGGCATGTGAAGGTGTGTCC 61.244 60.000 0.00 0.00 0.00 4.02
2702 2778 3.246226 GTGGTGCATCTAACATCATCGAC 59.754 47.826 0.00 0.00 29.32 4.20
2731 2807 1.404843 GTTCTCCTCGCATAGGTCCT 58.595 55.000 0.00 0.00 46.62 3.85
2734 2810 1.867363 AAGGTTCTCCTCGCATAGGT 58.133 50.000 2.21 0.00 46.62 3.08
2739 2815 2.184533 TGGAATAAGGTTCTCCTCGCA 58.815 47.619 0.00 0.00 44.35 5.10
2743 2819 9.228794 CTCCCTGAAATGGAATAAGGTTCTCCT 62.229 44.444 0.00 0.00 36.40 3.69
2779 2856 1.884926 GATCAGAAAGGCGAGGCGG 60.885 63.158 0.00 0.00 0.00 6.13
2791 2868 6.768483 TGTTAGGATTTGTGTTCTGATCAGA 58.232 36.000 21.67 21.67 35.27 3.27
2850 2928 1.416401 GGATCCCGACCTTTGCTGATA 59.584 52.381 0.00 0.00 0.00 2.15
2852 2930 1.198094 TGGATCCCGACCTTTGCTGA 61.198 55.000 9.90 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.