Multiple sequence alignment - TraesCS1A01G254700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G254700 chr1A 100.000 3254 0 0 1 3254 446217137 446220390 0.000000e+00 6010.0
1 TraesCS1A01G254700 chr1A 94.470 1320 48 3 1173 2467 444168088 444166769 0.000000e+00 2010.0
2 TraesCS1A01G254700 chr1A 97.583 786 15 2 2471 3252 444166345 444165560 0.000000e+00 1343.0
3 TraesCS1A01G254700 chr1A 95.406 283 13 0 849 1131 444168368 444168086 4.950000e-123 451.0
4 TraesCS1A01G254700 chr1A 93.013 229 16 0 39 267 133200241 133200469 5.200000e-88 335.0
5 TraesCS1A01G254700 chr1A 93.627 204 12 1 293 495 7553600 7553397 1.470000e-78 303.0
6 TraesCS1A01G254700 chr1A 85.821 268 35 3 1 267 24435406 24435141 6.870000e-72 281.0
7 TraesCS1A01G254700 chr2A 96.461 2176 73 4 293 2466 694744443 694742270 0.000000e+00 3589.0
8 TraesCS1A01G254700 chr2A 97.954 782 16 0 2471 3252 694741845 694741064 0.000000e+00 1356.0
9 TraesCS1A01G254700 chr2A 94.723 379 17 3 293 668 694745569 694745191 1.300000e-163 586.0
10 TraesCS1A01G254700 chr2A 83.886 211 26 4 996 1202 500245902 500246108 9.210000e-46 195.0
11 TraesCS1A01G254700 chr7A 95.682 2177 83 4 294 2467 709138620 709136452 0.000000e+00 3489.0
12 TraesCS1A01G254700 chr7A 97.716 788 14 1 2471 3254 709136028 709135241 0.000000e+00 1352.0
13 TraesCS1A01G254700 chr5A 95.218 2175 91 4 294 2467 262472480 262470318 0.000000e+00 3428.0
14 TraesCS1A01G254700 chr5A 98.089 785 12 1 2471 3252 705884101 705884885 0.000000e+00 1363.0
15 TraesCS1A01G254700 chr5A 97.834 785 14 1 2471 3252 262469894 262469110 0.000000e+00 1352.0
16 TraesCS1A01G254700 chr5A 95.053 283 14 0 849 1131 705868593 705868875 2.300000e-121 446.0
17 TraesCS1A01G254700 chr3B 94.777 1321 43 1 1173 2467 73032259 73033579 0.000000e+00 2034.0
18 TraesCS1A01G254700 chr3B 96.866 1085 34 0 1173 2257 452562180 452561096 0.000000e+00 1816.0
19 TraesCS1A01G254700 chr3B 95.406 283 13 0 849 1131 73031979 73032261 4.950000e-123 451.0
20 TraesCS1A01G254700 chr3B 93.640 283 15 2 849 1131 452562457 452562178 1.400000e-113 420.0
21 TraesCS1A01G254700 chr3B 96.875 224 7 0 2242 2465 452561084 452560861 3.070000e-100 375.0
22 TraesCS1A01G254700 chr3B 89.179 268 28 1 1 267 743817603 743817870 1.870000e-87 333.0
23 TraesCS1A01G254700 chr3B 93.659 205 12 1 294 497 765053455 765053251 4.080000e-79 305.0
24 TraesCS1A01G254700 chr4B 96.682 1085 36 0 1173 2257 629908303 629909387 0.000000e+00 1805.0
25 TraesCS1A01G254700 chr4B 96.590 1085 37 0 1173 2257 665901147 665902231 0.000000e+00 1799.0
26 TraesCS1A01G254700 chr4B 98.467 783 9 1 2471 3250 665902892 665903674 0.000000e+00 1376.0
27 TraesCS1A01G254700 chr2B 96.406 1085 39 0 1173 2257 553881174 553882258 0.000000e+00 1788.0
28 TraesCS1A01G254700 chr2B 94.660 206 10 1 293 497 71314349 71314144 5.240000e-83 318.0
29 TraesCS1A01G254700 chr4A 98.344 785 10 1 2471 3252 36001500 36000716 0.000000e+00 1375.0
30 TraesCS1A01G254700 chr4A 95.088 285 14 0 847 1131 36003527 36003243 1.780000e-122 449.0
31 TraesCS1A01G254700 chr1D 97.459 787 16 2 2472 3254 97784754 97783968 0.000000e+00 1339.0
32 TraesCS1A01G254700 chr1D 93.860 342 21 0 609 950 117323607 117323266 1.730000e-142 516.0
33 TraesCS1A01G254700 chr1D 94.757 267 14 0 1 267 472558389 472558123 1.810000e-112 416.0
34 TraesCS1A01G254700 chr1D 86.142 267 34 3 1 266 23399514 23399250 5.310000e-73 285.0
35 TraesCS1A01G254700 chr1D 96.552 58 2 0 575 632 97792996 97792939 2.670000e-16 97.1
36 TraesCS1A01G254700 chr6D 97.577 784 13 3 2472 3252 56196996 56197776 0.000000e+00 1338.0
37 TraesCS1A01G254700 chr6D 93.860 342 21 0 609 950 75302808 75302467 1.730000e-142 516.0
38 TraesCS1A01G254700 chr5D 94.444 342 19 0 609 950 309069215 309068874 8.000000e-146 527.0
39 TraesCS1A01G254700 chr5D 95.506 267 12 0 1 267 448731642 448731908 8.340000e-116 427.0
40 TraesCS1A01G254700 chr3D 94.152 342 20 0 609 950 149699102 149698761 3.720000e-144 521.0
41 TraesCS1A01G254700 chr4D 94.135 341 20 0 610 950 77912185 77912525 1.340000e-143 520.0
42 TraesCS1A01G254700 chr5B 89.974 379 37 1 572 950 563526079 563525702 3.770000e-134 488.0
43 TraesCS1A01G254700 chr3A 94.382 267 15 0 1 267 499689114 499689380 8.400000e-111 411.0
44 TraesCS1A01G254700 chr6A 93.633 267 17 0 1 267 590218565 590218299 1.820000e-107 399.0
45 TraesCS1A01G254700 chr6B 94.215 242 14 0 1 242 12915352 12915111 1.430000e-98 370.0
46 TraesCS1A01G254700 chr6B 93.689 206 12 1 293 497 562540154 562539949 1.130000e-79 307.0
47 TraesCS1A01G254700 chr1B 94.660 206 10 1 293 497 307205959 307206164 5.240000e-83 318.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G254700 chr1A 446217137 446220390 3253 False 6010.000000 6010 100.000000 1 3254 1 chr1A.!!$F2 3253
1 TraesCS1A01G254700 chr1A 444165560 444168368 2808 True 1268.000000 2010 95.819667 849 3252 3 chr1A.!!$R3 2403
2 TraesCS1A01G254700 chr2A 694741064 694745569 4505 True 1843.666667 3589 96.379333 293 3252 3 chr2A.!!$R1 2959
3 TraesCS1A01G254700 chr7A 709135241 709138620 3379 True 2420.500000 3489 96.699000 294 3254 2 chr7A.!!$R1 2960
4 TraesCS1A01G254700 chr5A 262469110 262472480 3370 True 2390.000000 3428 96.526000 294 3252 2 chr5A.!!$R1 2958
5 TraesCS1A01G254700 chr5A 705884101 705884885 784 False 1363.000000 1363 98.089000 2471 3252 1 chr5A.!!$F2 781
6 TraesCS1A01G254700 chr3B 73031979 73033579 1600 False 1242.500000 2034 95.091500 849 2467 2 chr3B.!!$F2 1618
7 TraesCS1A01G254700 chr3B 452560861 452562457 1596 True 870.333333 1816 95.793667 849 2465 3 chr3B.!!$R2 1616
8 TraesCS1A01G254700 chr4B 629908303 629909387 1084 False 1805.000000 1805 96.682000 1173 2257 1 chr4B.!!$F1 1084
9 TraesCS1A01G254700 chr4B 665901147 665903674 2527 False 1587.500000 1799 97.528500 1173 3250 2 chr4B.!!$F2 2077
10 TraesCS1A01G254700 chr2B 553881174 553882258 1084 False 1788.000000 1788 96.406000 1173 2257 1 chr2B.!!$F1 1084
11 TraesCS1A01G254700 chr4A 36000716 36003527 2811 True 912.000000 1375 96.716000 847 3252 2 chr4A.!!$R1 2405
12 TraesCS1A01G254700 chr1D 97783968 97784754 786 True 1339.000000 1339 97.459000 2472 3254 1 chr1D.!!$R2 782
13 TraesCS1A01G254700 chr6D 56196996 56197776 780 False 1338.000000 1338 97.577000 2472 3252 1 chr6D.!!$F1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.02877 CGAGCGCCTTTTGTTGTTCA 59.971 50.0 2.29 0.0 0.0 3.18 F
753 1880 0.18135 GGAATGCCCCAGATCGTCTT 59.819 55.0 0.00 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 2691 0.178767 TGGAGGCACAATCAGATCGG 59.821 55.0 0.0 0.0 0.0 4.18 R
2336 3491 0.251564 TGCGTCCATCCCCAAACAAT 60.252 50.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.668541 TCTTCAAGCATGCTAACAATCTAC 57.331 37.500 23.00 0.00 0.00 2.59
24 25 6.172630 TCTTCAAGCATGCTAACAATCTACA 58.827 36.000 23.00 0.00 0.00 2.74
25 26 6.314648 TCTTCAAGCATGCTAACAATCTACAG 59.685 38.462 23.00 4.41 0.00 2.74
26 27 4.333649 TCAAGCATGCTAACAATCTACAGC 59.666 41.667 23.00 0.00 34.56 4.40
27 28 3.209410 AGCATGCTAACAATCTACAGCC 58.791 45.455 21.21 0.00 32.97 4.85
28 29 3.118112 AGCATGCTAACAATCTACAGCCT 60.118 43.478 21.21 0.00 32.97 4.58
29 30 3.249559 GCATGCTAACAATCTACAGCCTC 59.750 47.826 11.37 0.00 32.97 4.70
30 31 4.445453 CATGCTAACAATCTACAGCCTCA 58.555 43.478 0.00 0.00 32.97 3.86
31 32 4.551702 TGCTAACAATCTACAGCCTCAA 57.448 40.909 0.00 0.00 32.97 3.02
32 33 4.507710 TGCTAACAATCTACAGCCTCAAG 58.492 43.478 0.00 0.00 32.97 3.02
33 34 4.020218 TGCTAACAATCTACAGCCTCAAGT 60.020 41.667 0.00 0.00 32.97 3.16
34 35 4.568760 GCTAACAATCTACAGCCTCAAGTC 59.431 45.833 0.00 0.00 0.00 3.01
35 36 4.899352 AACAATCTACAGCCTCAAGTCT 57.101 40.909 0.00 0.00 0.00 3.24
36 37 4.899352 ACAATCTACAGCCTCAAGTCTT 57.101 40.909 0.00 0.00 0.00 3.01
37 38 5.234466 ACAATCTACAGCCTCAAGTCTTT 57.766 39.130 0.00 0.00 0.00 2.52
38 39 5.241662 ACAATCTACAGCCTCAAGTCTTTC 58.758 41.667 0.00 0.00 0.00 2.62
39 40 5.221722 ACAATCTACAGCCTCAAGTCTTTCA 60.222 40.000 0.00 0.00 0.00 2.69
40 41 5.690464 ATCTACAGCCTCAAGTCTTTCAT 57.310 39.130 0.00 0.00 0.00 2.57
41 42 6.798427 ATCTACAGCCTCAAGTCTTTCATA 57.202 37.500 0.00 0.00 0.00 2.15
42 43 6.798427 TCTACAGCCTCAAGTCTTTCATAT 57.202 37.500 0.00 0.00 0.00 1.78
43 44 7.187824 TCTACAGCCTCAAGTCTTTCATATT 57.812 36.000 0.00 0.00 0.00 1.28
44 45 7.624549 TCTACAGCCTCAAGTCTTTCATATTT 58.375 34.615 0.00 0.00 0.00 1.40
45 46 6.749923 ACAGCCTCAAGTCTTTCATATTTC 57.250 37.500 0.00 0.00 0.00 2.17
46 47 5.649831 ACAGCCTCAAGTCTTTCATATTTCC 59.350 40.000 0.00 0.00 0.00 3.13
47 48 5.649395 CAGCCTCAAGTCTTTCATATTTCCA 59.351 40.000 0.00 0.00 0.00 3.53
48 49 5.884792 AGCCTCAAGTCTTTCATATTTCCAG 59.115 40.000 0.00 0.00 0.00 3.86
49 50 5.882557 GCCTCAAGTCTTTCATATTTCCAGA 59.117 40.000 0.00 0.00 0.00 3.86
50 51 6.038050 GCCTCAAGTCTTTCATATTTCCAGAG 59.962 42.308 0.00 0.00 0.00 3.35
51 52 7.334090 CCTCAAGTCTTTCATATTTCCAGAGA 58.666 38.462 0.00 0.00 0.00 3.10
52 53 7.826252 CCTCAAGTCTTTCATATTTCCAGAGAA 59.174 37.037 0.00 0.00 0.00 2.87
53 54 9.224267 CTCAAGTCTTTCATATTTCCAGAGAAA 57.776 33.333 0.00 0.00 45.78 2.52
66 67 6.639632 TTCCAGAGAAATAAATGGCATAGC 57.360 37.500 0.00 0.00 32.63 2.97
67 68 5.693961 TCCAGAGAAATAAATGGCATAGCA 58.306 37.500 0.00 0.00 32.63 3.49
68 69 5.532406 TCCAGAGAAATAAATGGCATAGCAC 59.468 40.000 0.00 0.00 32.63 4.40
69 70 5.300034 CCAGAGAAATAAATGGCATAGCACA 59.700 40.000 0.00 0.00 0.00 4.57
70 71 6.015688 CCAGAGAAATAAATGGCATAGCACAT 60.016 38.462 0.00 0.00 0.00 3.21
71 72 7.175467 CCAGAGAAATAAATGGCATAGCACATA 59.825 37.037 0.00 0.00 0.00 2.29
72 73 8.570488 CAGAGAAATAAATGGCATAGCACATAA 58.430 33.333 0.00 0.00 0.00 1.90
73 74 9.305555 AGAGAAATAAATGGCATAGCACATAAT 57.694 29.630 0.00 0.00 0.00 1.28
74 75 9.350357 GAGAAATAAATGGCATAGCACATAATG 57.650 33.333 0.00 0.00 0.00 1.90
75 76 8.863086 AGAAATAAATGGCATAGCACATAATGT 58.137 29.630 0.00 0.00 0.00 2.71
78 79 5.633830 AATGGCATAGCACATAATGTAGC 57.366 39.130 0.00 0.00 0.00 3.58
79 80 4.356405 TGGCATAGCACATAATGTAGCT 57.644 40.909 0.00 0.00 38.00 3.32
80 81 4.318332 TGGCATAGCACATAATGTAGCTC 58.682 43.478 0.00 0.00 36.59 4.09
81 82 4.202346 TGGCATAGCACATAATGTAGCTCA 60.202 41.667 0.00 0.00 36.59 4.26
82 83 4.756642 GGCATAGCACATAATGTAGCTCAA 59.243 41.667 0.00 0.00 36.59 3.02
83 84 5.334414 GGCATAGCACATAATGTAGCTCAAC 60.334 44.000 0.00 0.00 36.59 3.18
84 85 5.237127 GCATAGCACATAATGTAGCTCAACA 59.763 40.000 0.00 0.00 36.59 3.33
85 86 6.565435 GCATAGCACATAATGTAGCTCAACAG 60.565 42.308 0.00 0.00 36.59 3.16
86 87 4.194640 AGCACATAATGTAGCTCAACAGG 58.805 43.478 0.00 0.00 32.21 4.00
87 88 3.941483 GCACATAATGTAGCTCAACAGGT 59.059 43.478 0.00 0.00 31.70 4.00
88 89 4.396166 GCACATAATGTAGCTCAACAGGTT 59.604 41.667 0.00 0.00 31.70 3.50
89 90 5.106157 GCACATAATGTAGCTCAACAGGTTT 60.106 40.000 0.00 0.00 31.70 3.27
90 91 6.570378 GCACATAATGTAGCTCAACAGGTTTT 60.570 38.462 0.00 0.00 31.70 2.43
91 92 7.361713 GCACATAATGTAGCTCAACAGGTTTTA 60.362 37.037 0.00 0.00 31.70 1.52
92 93 7.962918 CACATAATGTAGCTCAACAGGTTTTAC 59.037 37.037 0.00 0.00 31.70 2.01
93 94 7.663905 ACATAATGTAGCTCAACAGGTTTTACA 59.336 33.333 0.00 0.00 31.70 2.41
94 95 8.677300 CATAATGTAGCTCAACAGGTTTTACAT 58.323 33.333 0.00 0.00 31.13 2.29
95 96 6.743575 ATGTAGCTCAACAGGTTTTACATC 57.256 37.500 0.00 0.00 31.70 3.06
96 97 5.616270 TGTAGCTCAACAGGTTTTACATCA 58.384 37.500 0.00 0.00 0.00 3.07
97 98 6.058833 TGTAGCTCAACAGGTTTTACATCAA 58.941 36.000 0.00 0.00 0.00 2.57
98 99 5.438761 AGCTCAACAGGTTTTACATCAAC 57.561 39.130 0.00 0.00 0.00 3.18
99 100 4.024048 AGCTCAACAGGTTTTACATCAACG 60.024 41.667 0.00 0.00 0.00 4.10
100 101 4.261031 GCTCAACAGGTTTTACATCAACGT 60.261 41.667 0.00 0.00 0.00 3.99
101 102 5.163302 TCAACAGGTTTTACATCAACGTG 57.837 39.130 0.00 4.41 42.88 4.49
104 105 5.164606 ACAGGTTTTACATCAACGTGTTC 57.835 39.130 5.53 0.00 46.11 3.18
105 106 4.636648 ACAGGTTTTACATCAACGTGTTCA 59.363 37.500 5.53 0.00 46.11 3.18
106 107 5.124138 ACAGGTTTTACATCAACGTGTTCAA 59.876 36.000 5.53 0.00 46.11 2.69
107 108 6.183360 ACAGGTTTTACATCAACGTGTTCAAT 60.183 34.615 5.53 0.00 46.11 2.57
108 109 6.359617 CAGGTTTTACATCAACGTGTTCAATC 59.640 38.462 0.00 0.00 35.98 2.67
109 110 6.262273 AGGTTTTACATCAACGTGTTCAATCT 59.738 34.615 0.00 0.00 33.62 2.40
110 111 6.359617 GGTTTTACATCAACGTGTTCAATCTG 59.640 38.462 0.00 0.00 33.62 2.90
111 112 3.542712 ACATCAACGTGTTCAATCTGC 57.457 42.857 0.00 0.00 0.00 4.26
112 113 2.877786 ACATCAACGTGTTCAATCTGCA 59.122 40.909 0.00 0.00 0.00 4.41
113 114 3.058708 ACATCAACGTGTTCAATCTGCAG 60.059 43.478 7.63 7.63 0.00 4.41
114 115 2.560504 TCAACGTGTTCAATCTGCAGT 58.439 42.857 14.67 0.00 0.00 4.40
115 116 2.942376 TCAACGTGTTCAATCTGCAGTT 59.058 40.909 14.67 1.65 0.00 3.16
116 117 3.376859 TCAACGTGTTCAATCTGCAGTTT 59.623 39.130 14.67 9.11 0.00 2.66
117 118 3.338818 ACGTGTTCAATCTGCAGTTTG 57.661 42.857 25.26 25.26 0.00 2.93
118 119 2.682856 ACGTGTTCAATCTGCAGTTTGT 59.317 40.909 28.17 12.08 0.00 2.83
119 120 3.128589 ACGTGTTCAATCTGCAGTTTGTT 59.871 39.130 28.17 12.23 0.00 2.83
120 121 3.483196 CGTGTTCAATCTGCAGTTTGTTG 59.517 43.478 28.17 20.64 0.00 3.33
121 122 4.423732 GTGTTCAATCTGCAGTTTGTTGT 58.576 39.130 28.17 0.00 0.00 3.32
122 123 4.864247 GTGTTCAATCTGCAGTTTGTTGTT 59.136 37.500 28.17 7.28 0.00 2.83
123 124 5.348451 GTGTTCAATCTGCAGTTTGTTGTTT 59.652 36.000 28.17 5.21 0.00 2.83
124 125 5.931146 TGTTCAATCTGCAGTTTGTTGTTTT 59.069 32.000 28.17 0.00 0.00 2.43
125 126 6.128607 TGTTCAATCTGCAGTTTGTTGTTTTG 60.129 34.615 28.17 9.23 0.00 2.44
126 127 4.329528 TCAATCTGCAGTTTGTTGTTTTGC 59.670 37.500 28.17 0.00 35.42 3.68
127 128 3.591196 TCTGCAGTTTGTTGTTTTGCT 57.409 38.095 14.67 0.00 35.85 3.91
128 129 3.924144 TCTGCAGTTTGTTGTTTTGCTT 58.076 36.364 14.67 0.00 35.85 3.91
129 130 3.925913 TCTGCAGTTTGTTGTTTTGCTTC 59.074 39.130 14.67 0.00 35.85 3.86
130 131 3.657634 TGCAGTTTGTTGTTTTGCTTCA 58.342 36.364 0.00 0.00 35.85 3.02
131 132 3.679025 TGCAGTTTGTTGTTTTGCTTCAG 59.321 39.130 0.00 0.00 35.85 3.02
132 133 3.484065 GCAGTTTGTTGTTTTGCTTCAGC 60.484 43.478 0.00 0.00 42.50 4.26
133 134 3.928375 CAGTTTGTTGTTTTGCTTCAGCT 59.072 39.130 0.00 0.00 42.66 4.24
134 135 4.032104 CAGTTTGTTGTTTTGCTTCAGCTC 59.968 41.667 0.00 0.00 42.66 4.09
135 136 3.865011 TTGTTGTTTTGCTTCAGCTCA 57.135 38.095 0.00 0.00 42.66 4.26
136 137 4.389890 TTGTTGTTTTGCTTCAGCTCAT 57.610 36.364 0.00 0.00 42.66 2.90
137 138 5.512753 TTGTTGTTTTGCTTCAGCTCATA 57.487 34.783 0.00 0.00 42.66 2.15
138 139 5.112220 TGTTGTTTTGCTTCAGCTCATAG 57.888 39.130 0.00 0.00 42.66 2.23
139 140 4.022935 TGTTGTTTTGCTTCAGCTCATAGG 60.023 41.667 0.00 0.00 42.66 2.57
140 141 2.489329 TGTTTTGCTTCAGCTCATAGGC 59.511 45.455 0.00 0.00 42.66 3.93
141 142 2.489329 GTTTTGCTTCAGCTCATAGGCA 59.511 45.455 0.00 0.00 42.66 4.75
142 143 2.723322 TTGCTTCAGCTCATAGGCAT 57.277 45.000 0.00 0.00 42.66 4.40
143 144 3.843893 TTGCTTCAGCTCATAGGCATA 57.156 42.857 0.00 0.00 42.66 3.14
144 145 3.843893 TGCTTCAGCTCATAGGCATAA 57.156 42.857 0.00 0.00 42.66 1.90
145 146 4.362470 TGCTTCAGCTCATAGGCATAAT 57.638 40.909 0.00 0.00 42.66 1.28
146 147 4.722220 TGCTTCAGCTCATAGGCATAATT 58.278 39.130 0.00 0.00 42.66 1.40
147 148 4.758674 TGCTTCAGCTCATAGGCATAATTC 59.241 41.667 0.00 0.00 42.66 2.17
148 149 4.758674 GCTTCAGCTCATAGGCATAATTCA 59.241 41.667 0.00 0.00 38.21 2.57
149 150 5.415077 GCTTCAGCTCATAGGCATAATTCAT 59.585 40.000 0.00 0.00 38.21 2.57
150 151 6.623114 GCTTCAGCTCATAGGCATAATTCATG 60.623 42.308 0.00 0.00 38.21 3.07
151 152 5.872963 TCAGCTCATAGGCATAATTCATGT 58.127 37.500 0.00 0.00 36.95 3.21
152 153 5.936372 TCAGCTCATAGGCATAATTCATGTC 59.064 40.000 0.00 0.00 39.73 3.06
153 154 5.123502 CAGCTCATAGGCATAATTCATGTCC 59.876 44.000 0.00 0.00 40.35 4.02
154 155 5.013913 AGCTCATAGGCATAATTCATGTCCT 59.986 40.000 0.00 11.55 40.35 3.85
155 156 5.353678 GCTCATAGGCATAATTCATGTCCTC 59.646 44.000 0.00 0.00 40.35 3.71
156 157 6.692849 TCATAGGCATAATTCATGTCCTCT 57.307 37.500 0.00 0.00 40.35 3.69
157 158 7.083062 TCATAGGCATAATTCATGTCCTCTT 57.917 36.000 0.00 0.00 40.35 2.85
158 159 6.938596 TCATAGGCATAATTCATGTCCTCTTG 59.061 38.462 0.00 10.46 40.35 3.02
159 160 5.121380 AGGCATAATTCATGTCCTCTTGT 57.879 39.130 0.00 0.00 40.35 3.16
160 161 6.252599 AGGCATAATTCATGTCCTCTTGTA 57.747 37.500 0.00 0.00 40.35 2.41
161 162 6.845908 AGGCATAATTCATGTCCTCTTGTAT 58.154 36.000 0.00 0.00 40.35 2.29
162 163 6.939163 AGGCATAATTCATGTCCTCTTGTATC 59.061 38.462 0.00 0.00 40.35 2.24
163 164 6.939163 GGCATAATTCATGTCCTCTTGTATCT 59.061 38.462 0.00 0.00 36.95 1.98
164 165 7.118971 GGCATAATTCATGTCCTCTTGTATCTC 59.881 40.741 0.00 0.00 36.95 2.75
165 166 7.877097 GCATAATTCATGTCCTCTTGTATCTCT 59.123 37.037 0.00 0.00 36.95 3.10
166 167 9.775854 CATAATTCATGTCCTCTTGTATCTCTT 57.224 33.333 0.00 0.00 0.00 2.85
167 168 9.995003 ATAATTCATGTCCTCTTGTATCTCTTC 57.005 33.333 0.00 0.00 0.00 2.87
168 169 7.673641 ATTCATGTCCTCTTGTATCTCTTCT 57.326 36.000 0.00 0.00 0.00 2.85
169 170 7.487822 TTCATGTCCTCTTGTATCTCTTCTT 57.512 36.000 0.00 0.00 0.00 2.52
170 171 7.487822 TCATGTCCTCTTGTATCTCTTCTTT 57.512 36.000 0.00 0.00 0.00 2.52
171 172 7.551585 TCATGTCCTCTTGTATCTCTTCTTTC 58.448 38.462 0.00 0.00 0.00 2.62
172 173 6.287589 TGTCCTCTTGTATCTCTTCTTTCC 57.712 41.667 0.00 0.00 0.00 3.13
173 174 5.780282 TGTCCTCTTGTATCTCTTCTTTCCA 59.220 40.000 0.00 0.00 0.00 3.53
174 175 6.270000 TGTCCTCTTGTATCTCTTCTTTCCAA 59.730 38.462 0.00 0.00 0.00 3.53
175 176 6.592220 GTCCTCTTGTATCTCTTCTTTCCAAC 59.408 42.308 0.00 0.00 0.00 3.77
176 177 6.498651 TCCTCTTGTATCTCTTCTTTCCAACT 59.501 38.462 0.00 0.00 0.00 3.16
177 178 7.016661 TCCTCTTGTATCTCTTCTTTCCAACTT 59.983 37.037 0.00 0.00 0.00 2.66
178 179 7.663493 CCTCTTGTATCTCTTCTTTCCAACTTT 59.337 37.037 0.00 0.00 0.00 2.66
179 180 8.608844 TCTTGTATCTCTTCTTTCCAACTTTC 57.391 34.615 0.00 0.00 0.00 2.62
180 181 8.210946 TCTTGTATCTCTTCTTTCCAACTTTCA 58.789 33.333 0.00 0.00 0.00 2.69
181 182 7.969536 TGTATCTCTTCTTTCCAACTTTCAG 57.030 36.000 0.00 0.00 0.00 3.02
182 183 6.936900 TGTATCTCTTCTTTCCAACTTTCAGG 59.063 38.462 0.00 0.00 0.00 3.86
183 184 5.630415 TCTCTTCTTTCCAACTTTCAGGA 57.370 39.130 0.00 0.00 0.00 3.86
184 185 6.192970 TCTCTTCTTTCCAACTTTCAGGAT 57.807 37.500 0.00 0.00 33.10 3.24
185 186 6.234177 TCTCTTCTTTCCAACTTTCAGGATC 58.766 40.000 0.00 0.00 33.10 3.36
186 187 5.940617 TCTTCTTTCCAACTTTCAGGATCA 58.059 37.500 0.00 0.00 33.10 2.92
187 188 6.000219 TCTTCTTTCCAACTTTCAGGATCAG 59.000 40.000 0.00 0.00 33.10 2.90
188 189 4.655963 TCTTTCCAACTTTCAGGATCAGG 58.344 43.478 0.00 0.00 33.10 3.86
189 190 4.350816 TCTTTCCAACTTTCAGGATCAGGA 59.649 41.667 0.00 0.00 33.10 3.86
190 191 3.988976 TCCAACTTTCAGGATCAGGAG 57.011 47.619 0.00 0.00 0.00 3.69
191 192 3.251484 TCCAACTTTCAGGATCAGGAGT 58.749 45.455 0.00 0.00 0.00 3.85
192 193 3.652869 TCCAACTTTCAGGATCAGGAGTT 59.347 43.478 0.00 0.00 0.00 3.01
193 194 4.104738 TCCAACTTTCAGGATCAGGAGTTT 59.895 41.667 0.00 0.00 0.00 2.66
194 195 4.217118 CCAACTTTCAGGATCAGGAGTTTG 59.783 45.833 0.00 0.00 0.00 2.93
195 196 4.713792 ACTTTCAGGATCAGGAGTTTGT 57.286 40.909 0.00 0.00 0.00 2.83
196 197 5.825593 ACTTTCAGGATCAGGAGTTTGTA 57.174 39.130 0.00 0.00 0.00 2.41
197 198 6.187727 ACTTTCAGGATCAGGAGTTTGTAA 57.812 37.500 0.00 0.00 0.00 2.41
198 199 6.784031 ACTTTCAGGATCAGGAGTTTGTAAT 58.216 36.000 0.00 0.00 0.00 1.89
199 200 7.234355 ACTTTCAGGATCAGGAGTTTGTAATT 58.766 34.615 0.00 0.00 0.00 1.40
200 201 7.391833 ACTTTCAGGATCAGGAGTTTGTAATTC 59.608 37.037 0.00 0.00 0.00 2.17
201 202 6.373005 TCAGGATCAGGAGTTTGTAATTCA 57.627 37.500 0.00 0.00 0.00 2.57
202 203 6.173339 TCAGGATCAGGAGTTTGTAATTCAC 58.827 40.000 0.00 0.00 0.00 3.18
203 204 5.063944 CAGGATCAGGAGTTTGTAATTCACG 59.936 44.000 0.00 0.00 0.00 4.35
204 205 4.201822 GGATCAGGAGTTTGTAATTCACGC 60.202 45.833 0.00 0.00 0.00 5.34
205 206 4.002906 TCAGGAGTTTGTAATTCACGCT 57.997 40.909 0.00 0.00 0.00 5.07
206 207 3.745975 TCAGGAGTTTGTAATTCACGCTG 59.254 43.478 0.00 0.00 0.00 5.18
207 208 3.498397 CAGGAGTTTGTAATTCACGCTGT 59.502 43.478 0.00 0.00 0.00 4.40
208 209 4.688879 CAGGAGTTTGTAATTCACGCTGTA 59.311 41.667 0.00 0.00 0.00 2.74
209 210 4.689345 AGGAGTTTGTAATTCACGCTGTAC 59.311 41.667 0.00 0.00 0.00 2.90
210 211 4.449743 GGAGTTTGTAATTCACGCTGTACA 59.550 41.667 0.00 0.00 0.00 2.90
211 212 5.121768 GGAGTTTGTAATTCACGCTGTACAT 59.878 40.000 0.00 0.00 0.00 2.29
212 213 6.348213 GGAGTTTGTAATTCACGCTGTACATT 60.348 38.462 0.00 0.00 0.00 2.71
213 214 6.370593 AGTTTGTAATTCACGCTGTACATTG 58.629 36.000 0.00 0.00 0.00 2.82
214 215 5.933187 TTGTAATTCACGCTGTACATTGT 57.067 34.783 0.00 0.00 0.00 2.71
215 216 5.933187 TGTAATTCACGCTGTACATTGTT 57.067 34.783 0.00 0.00 0.00 2.83
216 217 7.422878 TTGTAATTCACGCTGTACATTGTTA 57.577 32.000 0.00 0.00 0.00 2.41
217 218 6.823531 TGTAATTCACGCTGTACATTGTTAC 58.176 36.000 0.00 1.92 0.00 2.50
218 219 6.647481 TGTAATTCACGCTGTACATTGTTACT 59.353 34.615 0.00 0.00 0.00 2.24
219 220 4.983215 TTCACGCTGTACATTGTTACTG 57.017 40.909 0.00 0.00 0.00 2.74
220 221 4.245845 TCACGCTGTACATTGTTACTGA 57.754 40.909 0.00 0.00 0.00 3.41
221 222 4.234574 TCACGCTGTACATTGTTACTGAG 58.765 43.478 0.00 1.12 0.00 3.35
222 223 2.993899 ACGCTGTACATTGTTACTGAGC 59.006 45.455 0.00 0.00 0.00 4.26
223 224 3.254060 CGCTGTACATTGTTACTGAGCT 58.746 45.455 0.00 0.00 0.00 4.09
224 225 3.061295 CGCTGTACATTGTTACTGAGCTG 59.939 47.826 0.00 0.00 0.00 4.24
225 226 4.245660 GCTGTACATTGTTACTGAGCTGA 58.754 43.478 0.00 0.00 0.00 4.26
226 227 4.690748 GCTGTACATTGTTACTGAGCTGAA 59.309 41.667 0.00 0.00 0.00 3.02
227 228 5.352569 GCTGTACATTGTTACTGAGCTGAAT 59.647 40.000 0.00 0.00 0.00 2.57
228 229 6.674037 GCTGTACATTGTTACTGAGCTGAATG 60.674 42.308 0.00 0.00 0.00 2.67
229 230 6.463360 TGTACATTGTTACTGAGCTGAATGA 58.537 36.000 0.00 0.00 0.00 2.57
230 231 6.934083 TGTACATTGTTACTGAGCTGAATGAA 59.066 34.615 0.00 0.00 0.00 2.57
231 232 7.607607 TGTACATTGTTACTGAGCTGAATGAAT 59.392 33.333 0.00 0.00 0.00 2.57
232 233 7.458409 ACATTGTTACTGAGCTGAATGAATT 57.542 32.000 0.00 0.00 0.00 2.17
233 234 7.889469 ACATTGTTACTGAGCTGAATGAATTT 58.111 30.769 0.00 0.00 0.00 1.82
234 235 7.811236 ACATTGTTACTGAGCTGAATGAATTTG 59.189 33.333 0.00 0.00 0.00 2.32
235 236 6.258230 TGTTACTGAGCTGAATGAATTTGG 57.742 37.500 0.00 0.00 0.00 3.28
236 237 5.769662 TGTTACTGAGCTGAATGAATTTGGT 59.230 36.000 0.00 0.00 0.00 3.67
237 238 4.778534 ACTGAGCTGAATGAATTTGGTG 57.221 40.909 0.00 0.00 0.00 4.17
238 239 3.057033 ACTGAGCTGAATGAATTTGGTGC 60.057 43.478 0.00 0.00 0.00 5.01
239 240 3.159472 TGAGCTGAATGAATTTGGTGCT 58.841 40.909 0.00 0.00 0.00 4.40
240 241 3.575256 TGAGCTGAATGAATTTGGTGCTT 59.425 39.130 0.00 0.00 0.00 3.91
241 242 4.171754 GAGCTGAATGAATTTGGTGCTTC 58.828 43.478 0.00 0.00 0.00 3.86
242 243 2.919229 GCTGAATGAATTTGGTGCTTCG 59.081 45.455 0.00 0.00 0.00 3.79
243 244 3.366273 GCTGAATGAATTTGGTGCTTCGA 60.366 43.478 0.00 0.00 0.00 3.71
244 245 4.409570 CTGAATGAATTTGGTGCTTCGAG 58.590 43.478 0.00 0.00 0.00 4.04
245 246 2.927553 ATGAATTTGGTGCTTCGAGC 57.072 45.000 0.58 0.58 42.82 5.03
246 247 0.516877 TGAATTTGGTGCTTCGAGCG 59.483 50.000 3.08 0.00 46.26 5.03
252 253 2.946762 GTGCTTCGAGCGCCTTTT 59.053 55.556 2.29 0.00 46.26 2.27
253 254 1.441016 GTGCTTCGAGCGCCTTTTG 60.441 57.895 2.29 0.00 46.26 2.44
254 255 1.891919 TGCTTCGAGCGCCTTTTGT 60.892 52.632 2.29 0.00 46.26 2.83
255 256 1.282875 GCTTCGAGCGCCTTTTGTT 59.717 52.632 2.29 0.00 0.00 2.83
256 257 0.998727 GCTTCGAGCGCCTTTTGTTG 60.999 55.000 2.29 0.00 0.00 3.33
257 258 0.307760 CTTCGAGCGCCTTTTGTTGT 59.692 50.000 2.29 0.00 0.00 3.32
258 259 0.736053 TTCGAGCGCCTTTTGTTGTT 59.264 45.000 2.29 0.00 0.00 2.83
259 260 0.306533 TCGAGCGCCTTTTGTTGTTC 59.693 50.000 2.29 0.00 0.00 3.18
260 261 0.028770 CGAGCGCCTTTTGTTGTTCA 59.971 50.000 2.29 0.00 0.00 3.18
261 262 1.532921 CGAGCGCCTTTTGTTGTTCAA 60.533 47.619 2.29 0.00 0.00 2.69
262 263 2.535331 GAGCGCCTTTTGTTGTTCAAA 58.465 42.857 2.29 0.00 43.24 2.69
286 287 7.578310 AAAAACCCTCAAGTAGTTTTAGGAC 57.422 36.000 9.25 0.00 41.53 3.85
287 288 4.904895 ACCCTCAAGTAGTTTTAGGACC 57.095 45.455 9.25 0.00 0.00 4.46
288 289 4.237018 ACCCTCAAGTAGTTTTAGGACCA 58.763 43.478 9.25 0.00 0.00 4.02
289 290 4.286291 ACCCTCAAGTAGTTTTAGGACCAG 59.714 45.833 9.25 0.00 0.00 4.00
290 291 4.286291 CCCTCAAGTAGTTTTAGGACCAGT 59.714 45.833 9.25 0.00 0.00 4.00
291 292 5.238583 CCTCAAGTAGTTTTAGGACCAGTG 58.761 45.833 0.00 0.00 0.00 3.66
341 342 1.077915 TCGCGTTCCGGGTTTAATTC 58.922 50.000 5.77 0.00 40.60 2.17
430 432 0.688087 AAACCAAGGAAAACCCCGCA 60.688 50.000 0.00 0.00 34.66 5.69
433 435 0.684535 CCAAGGAAAACCCCGCAATT 59.315 50.000 0.00 0.00 34.66 2.32
472 474 5.410067 CCAAACTCCCGTCGTTATTAACTA 58.590 41.667 5.11 0.00 0.00 2.24
507 509 3.600448 AAACCATGGATCCCACCTATG 57.400 47.619 21.47 5.65 35.80 2.23
753 1880 0.181350 GGAATGCCCCAGATCGTCTT 59.819 55.000 0.00 0.00 0.00 3.01
770 1897 2.738213 CTTGAGCAAGTCAGCGGGGT 62.738 60.000 2.11 0.00 40.15 4.95
967 2094 4.998671 TGATGCCTTTGTTTCTGTTTCA 57.001 36.364 0.00 0.00 0.00 2.69
988 2115 3.865929 CTGCAGGCCGTCTTCACGT 62.866 63.158 5.57 0.00 45.17 4.49
1011 2138 0.622136 TCTGCAACATGCTGGATCCT 59.378 50.000 14.23 0.00 45.31 3.24
1109 2236 5.043737 TGACTAACCTTGGTTACTTGCTT 57.956 39.130 8.07 0.00 0.00 3.91
1318 2445 7.913297 GTCGTGATAGCCAAGCAAAATTAAATA 59.087 33.333 0.00 0.00 0.00 1.40
1430 2557 8.903820 AGAAGCTGAACTTGTTTAGTTTATTGT 58.096 29.630 7.19 0.00 47.00 2.71
1530 2657 2.166664 ACGGGAGCTCTCAATTCTGTAC 59.833 50.000 15.40 0.00 0.00 2.90
1564 2691 5.102313 GGCAAGGTAGATACATTGTTTTGC 58.898 41.667 16.14 4.92 46.28 3.68
1589 2716 0.396435 TGATTGTGCCTCCAAGACGT 59.604 50.000 0.00 0.00 0.00 4.34
1689 2816 4.457496 CACGCCATCTCGCCACCT 62.457 66.667 0.00 0.00 0.00 4.00
1764 2891 0.540133 ACCATGTTCATGCAGGCACA 60.540 50.000 6.25 6.25 0.00 4.57
1773 2900 0.609662 ATGCAGGCACAAATTGGACC 59.390 50.000 0.00 0.00 0.00 4.46
1999 3126 3.295973 CCTTCCCCTGAAAAGTTTGACA 58.704 45.455 0.00 0.00 0.00 3.58
2044 3171 3.509442 TGCCCACAGATCAAATCCTTTT 58.491 40.909 0.00 0.00 0.00 2.27
2231 3359 1.946650 GCATAGACCGTCTCGCTGC 60.947 63.158 3.74 9.28 0.00 5.25
2404 3559 0.036671 AACGGATCCTTGGTTCGGAC 60.037 55.000 10.75 0.00 32.41 4.79
2459 3614 2.282674 CAAGGGCAGCAGGAGCAA 60.283 61.111 0.00 0.00 45.49 3.91
2467 3622 2.042831 AGCAGGAGCAAATGACGCC 61.043 57.895 0.00 0.00 45.49 5.68
2468 3623 3.056313 GCAGGAGCAAATGACGCCC 62.056 63.158 0.00 0.00 41.58 6.13
2469 3624 1.675310 CAGGAGCAAATGACGCCCA 60.675 57.895 0.00 0.00 0.00 5.36
3044 4628 2.866762 GAGTATGCCCTTTGTTAGCTCG 59.133 50.000 0.00 0.00 0.00 5.03
3066 4650 4.273969 CGTTGCCCTTTTCTGTAACACTAA 59.726 41.667 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.172630 TGTAGATTGTTAGCATGCTTGAAGA 58.827 36.000 28.02 10.95 0.00 2.87
1 2 6.426980 TGTAGATTGTTAGCATGCTTGAAG 57.573 37.500 28.02 0.00 0.00 3.02
2 3 5.163723 GCTGTAGATTGTTAGCATGCTTGAA 60.164 40.000 28.02 12.63 36.24 2.69
3 4 4.333649 GCTGTAGATTGTTAGCATGCTTGA 59.666 41.667 28.02 12.61 36.24 3.02
4 5 4.497006 GGCTGTAGATTGTTAGCATGCTTG 60.497 45.833 28.02 0.00 37.89 4.01
5 6 3.629398 GGCTGTAGATTGTTAGCATGCTT 59.371 43.478 28.02 7.11 37.89 3.91
6 7 3.118112 AGGCTGTAGATTGTTAGCATGCT 60.118 43.478 25.99 25.99 37.89 3.79
7 8 3.209410 AGGCTGTAGATTGTTAGCATGC 58.791 45.455 10.51 10.51 37.89 4.06
8 9 4.445453 TGAGGCTGTAGATTGTTAGCATG 58.555 43.478 0.00 0.00 37.89 4.06
9 10 4.760530 TGAGGCTGTAGATTGTTAGCAT 57.239 40.909 0.00 0.00 37.89 3.79
10 11 4.020218 ACTTGAGGCTGTAGATTGTTAGCA 60.020 41.667 0.00 0.00 37.89 3.49
11 12 4.508662 ACTTGAGGCTGTAGATTGTTAGC 58.491 43.478 0.00 0.00 35.49 3.09
12 13 5.971763 AGACTTGAGGCTGTAGATTGTTAG 58.028 41.667 0.00 0.00 0.00 2.34
13 14 6.360370 AAGACTTGAGGCTGTAGATTGTTA 57.640 37.500 0.00 0.00 0.00 2.41
14 15 4.899352 AGACTTGAGGCTGTAGATTGTT 57.101 40.909 0.00 0.00 0.00 2.83
15 16 4.899352 AAGACTTGAGGCTGTAGATTGT 57.101 40.909 0.00 0.00 0.00 2.71
16 17 5.240891 TGAAAGACTTGAGGCTGTAGATTG 58.759 41.667 0.00 0.00 0.00 2.67
17 18 5.489792 TGAAAGACTTGAGGCTGTAGATT 57.510 39.130 0.00 0.00 0.00 2.40
18 19 5.690464 ATGAAAGACTTGAGGCTGTAGAT 57.310 39.130 0.00 0.00 0.00 1.98
19 20 6.798427 ATATGAAAGACTTGAGGCTGTAGA 57.202 37.500 0.00 0.00 0.00 2.59
20 21 7.011857 GGAAATATGAAAGACTTGAGGCTGTAG 59.988 40.741 0.00 0.00 0.00 2.74
21 22 6.823689 GGAAATATGAAAGACTTGAGGCTGTA 59.176 38.462 0.00 0.00 0.00 2.74
22 23 5.649831 GGAAATATGAAAGACTTGAGGCTGT 59.350 40.000 0.00 0.00 0.00 4.40
23 24 5.649395 TGGAAATATGAAAGACTTGAGGCTG 59.351 40.000 0.00 0.00 0.00 4.85
24 25 5.819991 TGGAAATATGAAAGACTTGAGGCT 58.180 37.500 0.00 0.00 0.00 4.58
25 26 5.882557 TCTGGAAATATGAAAGACTTGAGGC 59.117 40.000 0.00 0.00 0.00 4.70
26 27 7.334090 TCTCTGGAAATATGAAAGACTTGAGG 58.666 38.462 0.00 0.00 0.00 3.86
27 28 8.783833 TTCTCTGGAAATATGAAAGACTTGAG 57.216 34.615 0.00 0.00 0.00 3.02
28 29 9.745018 ATTTCTCTGGAAATATGAAAGACTTGA 57.255 29.630 2.64 0.00 46.55 3.02
36 37 9.199645 TGCCATTTATTTCTCTGGAAATATGAA 57.800 29.630 10.63 5.52 46.94 2.57
37 38 8.765488 TGCCATTTATTTCTCTGGAAATATGA 57.235 30.769 10.63 5.37 46.94 2.15
40 41 8.796475 GCTATGCCATTTATTTCTCTGGAAATA 58.204 33.333 6.98 6.98 46.55 1.40
42 43 6.606796 TGCTATGCCATTTATTTCTCTGGAAA 59.393 34.615 0.00 0.00 44.26 3.13
43 44 6.039717 GTGCTATGCCATTTATTTCTCTGGAA 59.960 38.462 0.00 0.00 0.00 3.53
44 45 5.532406 GTGCTATGCCATTTATTTCTCTGGA 59.468 40.000 0.00 0.00 0.00 3.86
45 46 5.300034 TGTGCTATGCCATTTATTTCTCTGG 59.700 40.000 0.00 0.00 0.00 3.86
46 47 6.381481 TGTGCTATGCCATTTATTTCTCTG 57.619 37.500 0.00 0.00 0.00 3.35
47 48 8.696043 TTATGTGCTATGCCATTTATTTCTCT 57.304 30.769 0.00 0.00 0.00 3.10
48 49 9.350357 CATTATGTGCTATGCCATTTATTTCTC 57.650 33.333 0.00 0.00 0.00 2.87
49 50 8.863086 ACATTATGTGCTATGCCATTTATTTCT 58.137 29.630 0.00 0.00 0.00 2.52
52 53 8.246180 GCTACATTATGTGCTATGCCATTTATT 58.754 33.333 8.26 0.00 0.00 1.40
53 54 7.613022 AGCTACATTATGTGCTATGCCATTTAT 59.387 33.333 16.41 0.00 34.61 1.40
54 55 6.942005 AGCTACATTATGTGCTATGCCATTTA 59.058 34.615 16.41 0.00 34.61 1.40
55 56 5.771666 AGCTACATTATGTGCTATGCCATTT 59.228 36.000 16.41 0.00 34.61 2.32
56 57 5.319453 AGCTACATTATGTGCTATGCCATT 58.681 37.500 16.41 0.00 34.61 3.16
57 58 4.914983 AGCTACATTATGTGCTATGCCAT 58.085 39.130 16.41 0.00 34.61 4.40
58 59 4.202346 TGAGCTACATTATGTGCTATGCCA 60.202 41.667 17.41 11.09 35.80 4.92
59 60 4.318332 TGAGCTACATTATGTGCTATGCC 58.682 43.478 17.41 9.31 35.80 4.40
60 61 5.237127 TGTTGAGCTACATTATGTGCTATGC 59.763 40.000 17.41 10.07 35.80 3.14
61 62 6.073385 CCTGTTGAGCTACATTATGTGCTATG 60.073 42.308 17.41 9.29 35.80 2.23
62 63 5.994054 CCTGTTGAGCTACATTATGTGCTAT 59.006 40.000 17.41 3.03 35.80 2.97
63 64 5.104941 ACCTGTTGAGCTACATTATGTGCTA 60.105 40.000 17.41 5.62 35.80 3.49
64 65 4.194640 CCTGTTGAGCTACATTATGTGCT 58.805 43.478 17.42 17.42 37.41 4.40
65 66 3.941483 ACCTGTTGAGCTACATTATGTGC 59.059 43.478 8.26 9.49 0.00 4.57
66 67 6.500684 AAACCTGTTGAGCTACATTATGTG 57.499 37.500 8.26 0.00 0.00 3.21
67 68 7.663905 TGTAAAACCTGTTGAGCTACATTATGT 59.336 33.333 2.58 2.58 0.00 2.29
68 69 8.039603 TGTAAAACCTGTTGAGCTACATTATG 57.960 34.615 0.00 0.00 0.00 1.90
69 70 8.807948 ATGTAAAACCTGTTGAGCTACATTAT 57.192 30.769 0.00 0.00 0.00 1.28
70 71 7.880713 TGATGTAAAACCTGTTGAGCTACATTA 59.119 33.333 0.00 0.00 30.68 1.90
71 72 6.714810 TGATGTAAAACCTGTTGAGCTACATT 59.285 34.615 0.00 0.00 30.68 2.71
72 73 6.237901 TGATGTAAAACCTGTTGAGCTACAT 58.762 36.000 0.00 0.00 32.63 2.29
73 74 5.616270 TGATGTAAAACCTGTTGAGCTACA 58.384 37.500 0.00 0.00 0.00 2.74
74 75 6.371389 GTTGATGTAAAACCTGTTGAGCTAC 58.629 40.000 0.00 0.00 0.00 3.58
75 76 5.178623 CGTTGATGTAAAACCTGTTGAGCTA 59.821 40.000 0.00 0.00 0.00 3.32
76 77 4.024048 CGTTGATGTAAAACCTGTTGAGCT 60.024 41.667 0.00 0.00 0.00 4.09
77 78 4.219033 CGTTGATGTAAAACCTGTTGAGC 58.781 43.478 0.00 0.00 0.00 4.26
78 79 5.204833 CACGTTGATGTAAAACCTGTTGAG 58.795 41.667 0.00 0.00 0.00 3.02
79 80 4.636648 ACACGTTGATGTAAAACCTGTTGA 59.363 37.500 0.00 0.00 0.00 3.18
80 81 4.915704 ACACGTTGATGTAAAACCTGTTG 58.084 39.130 0.00 0.00 0.00 3.33
81 82 5.124138 TGAACACGTTGATGTAAAACCTGTT 59.876 36.000 0.00 4.19 38.56 3.16
82 83 4.636648 TGAACACGTTGATGTAAAACCTGT 59.363 37.500 0.00 0.00 31.05 4.00
83 84 5.163302 TGAACACGTTGATGTAAAACCTG 57.837 39.130 0.00 0.00 30.75 4.00
84 85 5.821516 TTGAACACGTTGATGTAAAACCT 57.178 34.783 0.00 0.00 30.75 3.50
85 86 6.359617 CAGATTGAACACGTTGATGTAAAACC 59.640 38.462 0.00 0.00 30.75 3.27
86 87 6.129457 GCAGATTGAACACGTTGATGTAAAAC 60.129 38.462 0.00 0.00 30.75 2.43
87 88 5.912396 GCAGATTGAACACGTTGATGTAAAA 59.088 36.000 0.00 0.00 30.75 1.52
88 89 5.008118 TGCAGATTGAACACGTTGATGTAAA 59.992 36.000 0.00 0.00 30.75 2.01
89 90 4.513318 TGCAGATTGAACACGTTGATGTAA 59.487 37.500 0.00 0.00 30.75 2.41
90 91 4.061596 TGCAGATTGAACACGTTGATGTA 58.938 39.130 0.00 0.00 30.75 2.29
91 92 2.877786 TGCAGATTGAACACGTTGATGT 59.122 40.909 0.00 0.00 0.00 3.06
92 93 3.058708 ACTGCAGATTGAACACGTTGATG 60.059 43.478 23.35 0.00 0.00 3.07
93 94 3.141398 ACTGCAGATTGAACACGTTGAT 58.859 40.909 23.35 0.00 0.00 2.57
94 95 2.560504 ACTGCAGATTGAACACGTTGA 58.439 42.857 23.35 0.00 0.00 3.18
95 96 3.338818 AACTGCAGATTGAACACGTTG 57.661 42.857 23.35 0.00 0.00 4.10
96 97 3.128589 ACAAACTGCAGATTGAACACGTT 59.871 39.130 34.96 14.19 32.92 3.99
97 98 2.682856 ACAAACTGCAGATTGAACACGT 59.317 40.909 34.96 14.83 32.92 4.49
98 99 3.338818 ACAAACTGCAGATTGAACACG 57.661 42.857 34.96 14.19 32.92 4.49
99 100 4.423732 ACAACAAACTGCAGATTGAACAC 58.576 39.130 34.96 0.00 32.92 3.32
100 101 4.717233 ACAACAAACTGCAGATTGAACA 57.283 36.364 34.96 0.00 32.92 3.18
101 102 6.242829 CAAAACAACAAACTGCAGATTGAAC 58.757 36.000 34.96 0.00 32.92 3.18
102 103 5.163874 GCAAAACAACAAACTGCAGATTGAA 60.164 36.000 34.96 0.00 32.92 2.69
103 104 4.329528 GCAAAACAACAAACTGCAGATTGA 59.670 37.500 34.96 0.00 32.92 2.57
104 105 4.330620 AGCAAAACAACAAACTGCAGATTG 59.669 37.500 28.99 28.99 35.44 2.67
105 106 4.506758 AGCAAAACAACAAACTGCAGATT 58.493 34.783 23.35 12.96 35.44 2.40
106 107 4.127566 AGCAAAACAACAAACTGCAGAT 57.872 36.364 23.35 5.41 35.44 2.90
107 108 3.591196 AGCAAAACAACAAACTGCAGA 57.409 38.095 23.35 0.00 35.44 4.26
108 109 3.679025 TGAAGCAAAACAACAAACTGCAG 59.321 39.130 13.48 13.48 35.44 4.41
109 110 3.657634 TGAAGCAAAACAACAAACTGCA 58.342 36.364 0.00 0.00 35.44 4.41
110 111 3.484065 GCTGAAGCAAAACAACAAACTGC 60.484 43.478 0.00 0.00 41.59 4.40
111 112 3.928375 AGCTGAAGCAAAACAACAAACTG 59.072 39.130 4.90 0.00 45.16 3.16
112 113 4.176271 GAGCTGAAGCAAAACAACAAACT 58.824 39.130 4.90 0.00 45.16 2.66
113 114 3.925913 TGAGCTGAAGCAAAACAACAAAC 59.074 39.130 4.90 0.00 45.16 2.93
114 115 4.185467 TGAGCTGAAGCAAAACAACAAA 57.815 36.364 4.90 0.00 45.16 2.83
115 116 3.865011 TGAGCTGAAGCAAAACAACAA 57.135 38.095 4.90 0.00 45.16 2.83
116 117 4.022935 CCTATGAGCTGAAGCAAAACAACA 60.023 41.667 4.90 0.00 45.16 3.33
117 118 4.479619 CCTATGAGCTGAAGCAAAACAAC 58.520 43.478 4.90 0.00 45.16 3.32
118 119 3.057315 GCCTATGAGCTGAAGCAAAACAA 60.057 43.478 4.90 0.00 45.16 2.83
119 120 2.489329 GCCTATGAGCTGAAGCAAAACA 59.511 45.455 4.90 0.16 45.16 2.83
120 121 2.489329 TGCCTATGAGCTGAAGCAAAAC 59.511 45.455 4.90 0.00 45.16 2.43
121 122 2.794103 TGCCTATGAGCTGAAGCAAAA 58.206 42.857 4.90 0.00 45.16 2.44
122 123 2.495155 TGCCTATGAGCTGAAGCAAA 57.505 45.000 4.90 0.00 45.16 3.68
123 124 2.723322 ATGCCTATGAGCTGAAGCAA 57.277 45.000 4.90 0.00 45.16 3.91
124 125 3.843893 TTATGCCTATGAGCTGAAGCA 57.156 42.857 4.90 0.00 45.16 3.91
125 126 4.758674 TGAATTATGCCTATGAGCTGAAGC 59.241 41.667 0.00 0.00 42.49 3.86
126 127 6.430308 ACATGAATTATGCCTATGAGCTGAAG 59.570 38.462 0.00 0.00 40.59 3.02
127 128 6.301486 ACATGAATTATGCCTATGAGCTGAA 58.699 36.000 0.00 0.00 40.59 3.02
128 129 5.872963 ACATGAATTATGCCTATGAGCTGA 58.127 37.500 0.00 0.00 40.59 4.26
129 130 5.123502 GGACATGAATTATGCCTATGAGCTG 59.876 44.000 0.00 0.00 40.59 4.24
130 131 5.013913 AGGACATGAATTATGCCTATGAGCT 59.986 40.000 0.00 0.00 39.76 4.09
131 132 5.251764 AGGACATGAATTATGCCTATGAGC 58.748 41.667 0.00 0.00 39.76 4.26
132 133 6.709281 AGAGGACATGAATTATGCCTATGAG 58.291 40.000 0.00 0.00 40.82 2.90
133 134 6.692849 AGAGGACATGAATTATGCCTATGA 57.307 37.500 0.00 0.00 40.82 2.15
134 135 6.713903 ACAAGAGGACATGAATTATGCCTATG 59.286 38.462 0.00 6.60 40.82 2.23
135 136 6.845908 ACAAGAGGACATGAATTATGCCTAT 58.154 36.000 0.00 0.00 40.82 2.57
136 137 6.252599 ACAAGAGGACATGAATTATGCCTA 57.747 37.500 0.00 0.00 40.82 3.93
137 138 5.121380 ACAAGAGGACATGAATTATGCCT 57.879 39.130 0.00 1.85 42.32 4.75
138 139 6.939163 AGATACAAGAGGACATGAATTATGCC 59.061 38.462 0.00 0.00 40.59 4.40
139 140 7.877097 AGAGATACAAGAGGACATGAATTATGC 59.123 37.037 0.00 0.00 40.59 3.14
140 141 9.775854 AAGAGATACAAGAGGACATGAATTATG 57.224 33.333 0.00 0.00 42.68 1.90
141 142 9.995003 GAAGAGATACAAGAGGACATGAATTAT 57.005 33.333 0.00 0.00 0.00 1.28
142 143 9.206690 AGAAGAGATACAAGAGGACATGAATTA 57.793 33.333 0.00 0.00 0.00 1.40
143 144 8.088463 AGAAGAGATACAAGAGGACATGAATT 57.912 34.615 0.00 0.00 0.00 2.17
144 145 7.673641 AGAAGAGATACAAGAGGACATGAAT 57.326 36.000 0.00 0.00 0.00 2.57
145 146 7.487822 AAGAAGAGATACAAGAGGACATGAA 57.512 36.000 0.00 0.00 0.00 2.57
146 147 7.364232 GGAAAGAAGAGATACAAGAGGACATGA 60.364 40.741 0.00 0.00 0.00 3.07
147 148 6.760770 GGAAAGAAGAGATACAAGAGGACATG 59.239 42.308 0.00 0.00 0.00 3.21
148 149 6.441924 TGGAAAGAAGAGATACAAGAGGACAT 59.558 38.462 0.00 0.00 0.00 3.06
149 150 5.780282 TGGAAAGAAGAGATACAAGAGGACA 59.220 40.000 0.00 0.00 0.00 4.02
150 151 6.287589 TGGAAAGAAGAGATACAAGAGGAC 57.712 41.667 0.00 0.00 0.00 3.85
151 152 6.498651 AGTTGGAAAGAAGAGATACAAGAGGA 59.501 38.462 0.00 0.00 0.00 3.71
152 153 6.706295 AGTTGGAAAGAAGAGATACAAGAGG 58.294 40.000 0.00 0.00 0.00 3.69
153 154 8.614469 AAAGTTGGAAAGAAGAGATACAAGAG 57.386 34.615 0.00 0.00 0.00 2.85
154 155 8.210946 TGAAAGTTGGAAAGAAGAGATACAAGA 58.789 33.333 0.00 0.00 0.00 3.02
155 156 8.383318 TGAAAGTTGGAAAGAAGAGATACAAG 57.617 34.615 0.00 0.00 0.00 3.16
156 157 7.445402 CCTGAAAGTTGGAAAGAAGAGATACAA 59.555 37.037 0.00 0.00 0.00 2.41
157 158 6.936900 CCTGAAAGTTGGAAAGAAGAGATACA 59.063 38.462 0.00 0.00 0.00 2.29
158 159 7.162082 TCCTGAAAGTTGGAAAGAAGAGATAC 58.838 38.462 0.00 0.00 0.00 2.24
159 160 7.316393 TCCTGAAAGTTGGAAAGAAGAGATA 57.684 36.000 0.00 0.00 0.00 1.98
160 161 6.192970 TCCTGAAAGTTGGAAAGAAGAGAT 57.807 37.500 0.00 0.00 0.00 2.75
161 162 5.630415 TCCTGAAAGTTGGAAAGAAGAGA 57.370 39.130 0.00 0.00 0.00 3.10
162 163 6.000219 TGATCCTGAAAGTTGGAAAGAAGAG 59.000 40.000 0.00 0.00 35.81 2.85
163 164 5.940617 TGATCCTGAAAGTTGGAAAGAAGA 58.059 37.500 0.00 0.00 35.81 2.87
164 165 5.182760 CCTGATCCTGAAAGTTGGAAAGAAG 59.817 44.000 0.00 0.00 35.81 2.85
165 166 5.072741 CCTGATCCTGAAAGTTGGAAAGAA 58.927 41.667 0.00 0.00 35.81 2.52
166 167 4.350816 TCCTGATCCTGAAAGTTGGAAAGA 59.649 41.667 0.00 0.00 35.81 2.52
167 168 4.655963 TCCTGATCCTGAAAGTTGGAAAG 58.344 43.478 0.00 0.00 35.81 2.62
168 169 4.104738 ACTCCTGATCCTGAAAGTTGGAAA 59.895 41.667 0.00 0.00 35.81 3.13
169 170 3.652869 ACTCCTGATCCTGAAAGTTGGAA 59.347 43.478 0.00 0.00 35.81 3.53
170 171 3.251484 ACTCCTGATCCTGAAAGTTGGA 58.749 45.455 0.00 0.00 36.72 3.53
171 172 3.710209 ACTCCTGATCCTGAAAGTTGG 57.290 47.619 0.00 0.00 0.00 3.77
172 173 4.823989 ACAAACTCCTGATCCTGAAAGTTG 59.176 41.667 0.00 0.00 0.00 3.16
173 174 5.053978 ACAAACTCCTGATCCTGAAAGTT 57.946 39.130 0.00 0.00 0.00 2.66
174 175 4.713792 ACAAACTCCTGATCCTGAAAGT 57.286 40.909 0.00 0.00 0.00 2.66
175 176 7.391554 TGAATTACAAACTCCTGATCCTGAAAG 59.608 37.037 0.00 0.00 0.00 2.62
176 177 7.174946 GTGAATTACAAACTCCTGATCCTGAAA 59.825 37.037 0.00 0.00 0.00 2.69
177 178 6.655003 GTGAATTACAAACTCCTGATCCTGAA 59.345 38.462 0.00 0.00 0.00 3.02
178 179 6.173339 GTGAATTACAAACTCCTGATCCTGA 58.827 40.000 0.00 0.00 0.00 3.86
179 180 5.063944 CGTGAATTACAAACTCCTGATCCTG 59.936 44.000 0.00 0.00 0.00 3.86
180 181 5.178797 CGTGAATTACAAACTCCTGATCCT 58.821 41.667 0.00 0.00 0.00 3.24
181 182 4.201822 GCGTGAATTACAAACTCCTGATCC 60.202 45.833 0.00 0.00 0.00 3.36
182 183 4.631813 AGCGTGAATTACAAACTCCTGATC 59.368 41.667 0.00 0.00 0.00 2.92
183 184 4.393062 CAGCGTGAATTACAAACTCCTGAT 59.607 41.667 0.00 0.00 0.00 2.90
184 185 3.745975 CAGCGTGAATTACAAACTCCTGA 59.254 43.478 0.00 0.00 0.00 3.86
185 186 3.498397 ACAGCGTGAATTACAAACTCCTG 59.502 43.478 0.00 0.00 0.00 3.86
186 187 3.740115 ACAGCGTGAATTACAAACTCCT 58.260 40.909 0.00 0.00 0.00 3.69
187 188 4.449743 TGTACAGCGTGAATTACAAACTCC 59.550 41.667 0.00 0.00 0.00 3.85
188 189 5.585500 TGTACAGCGTGAATTACAAACTC 57.415 39.130 0.00 0.00 0.00 3.01
189 190 6.017440 ACAATGTACAGCGTGAATTACAAACT 60.017 34.615 0.33 0.00 0.00 2.66
190 191 6.140110 ACAATGTACAGCGTGAATTACAAAC 58.860 36.000 0.33 0.00 0.00 2.93
191 192 6.307031 ACAATGTACAGCGTGAATTACAAA 57.693 33.333 0.33 0.00 0.00 2.83
192 193 5.933187 ACAATGTACAGCGTGAATTACAA 57.067 34.783 0.33 0.00 0.00 2.41
193 194 5.933187 AACAATGTACAGCGTGAATTACA 57.067 34.783 0.33 0.00 0.00 2.41
194 195 6.953743 CAGTAACAATGTACAGCGTGAATTAC 59.046 38.462 0.33 5.77 0.00 1.89
195 196 6.869388 TCAGTAACAATGTACAGCGTGAATTA 59.131 34.615 0.33 0.00 0.00 1.40
196 197 5.699001 TCAGTAACAATGTACAGCGTGAATT 59.301 36.000 0.33 0.00 0.00 2.17
197 198 5.234752 TCAGTAACAATGTACAGCGTGAAT 58.765 37.500 0.33 0.00 0.00 2.57
198 199 4.623002 TCAGTAACAATGTACAGCGTGAA 58.377 39.130 0.33 0.00 0.00 3.18
199 200 4.234574 CTCAGTAACAATGTACAGCGTGA 58.765 43.478 0.33 0.00 0.00 4.35
200 201 3.181530 GCTCAGTAACAATGTACAGCGTG 60.182 47.826 0.33 2.06 0.00 5.34
201 202 2.993899 GCTCAGTAACAATGTACAGCGT 59.006 45.455 0.33 0.00 0.00 5.07
202 203 3.061295 CAGCTCAGTAACAATGTACAGCG 59.939 47.826 0.33 0.00 31.55 5.18
203 204 4.245660 TCAGCTCAGTAACAATGTACAGC 58.754 43.478 0.33 0.00 0.00 4.40
204 205 6.591448 TCATTCAGCTCAGTAACAATGTACAG 59.409 38.462 0.33 0.00 0.00 2.74
205 206 6.463360 TCATTCAGCTCAGTAACAATGTACA 58.537 36.000 0.00 0.00 0.00 2.90
206 207 6.968131 TCATTCAGCTCAGTAACAATGTAC 57.032 37.500 0.00 0.00 0.00 2.90
207 208 8.565896 AATTCATTCAGCTCAGTAACAATGTA 57.434 30.769 0.00 0.00 0.00 2.29
208 209 7.458409 AATTCATTCAGCTCAGTAACAATGT 57.542 32.000 0.00 0.00 0.00 2.71
209 210 7.274904 CCAAATTCATTCAGCTCAGTAACAATG 59.725 37.037 0.00 0.00 0.00 2.82
210 211 7.039504 ACCAAATTCATTCAGCTCAGTAACAAT 60.040 33.333 0.00 0.00 0.00 2.71
211 212 6.265196 ACCAAATTCATTCAGCTCAGTAACAA 59.735 34.615 0.00 0.00 0.00 2.83
212 213 5.769662 ACCAAATTCATTCAGCTCAGTAACA 59.230 36.000 0.00 0.00 0.00 2.41
213 214 6.088824 CACCAAATTCATTCAGCTCAGTAAC 58.911 40.000 0.00 0.00 0.00 2.50
214 215 5.335897 GCACCAAATTCATTCAGCTCAGTAA 60.336 40.000 0.00 0.00 0.00 2.24
215 216 4.156556 GCACCAAATTCATTCAGCTCAGTA 59.843 41.667 0.00 0.00 0.00 2.74
216 217 3.057033 GCACCAAATTCATTCAGCTCAGT 60.057 43.478 0.00 0.00 0.00 3.41
217 218 3.192844 AGCACCAAATTCATTCAGCTCAG 59.807 43.478 0.00 0.00 0.00 3.35
218 219 3.159472 AGCACCAAATTCATTCAGCTCA 58.841 40.909 0.00 0.00 0.00 4.26
219 220 3.863142 AGCACCAAATTCATTCAGCTC 57.137 42.857 0.00 0.00 0.00 4.09
220 221 3.366679 CGAAGCACCAAATTCATTCAGCT 60.367 43.478 0.00 0.00 0.00 4.24
221 222 2.919229 CGAAGCACCAAATTCATTCAGC 59.081 45.455 0.00 0.00 0.00 4.26
222 223 4.409570 CTCGAAGCACCAAATTCATTCAG 58.590 43.478 0.00 0.00 0.00 3.02
223 224 3.366273 GCTCGAAGCACCAAATTCATTCA 60.366 43.478 2.53 0.00 41.89 2.57
224 225 3.174375 GCTCGAAGCACCAAATTCATTC 58.826 45.455 2.53 0.00 41.89 2.67
225 226 2.414559 CGCTCGAAGCACCAAATTCATT 60.415 45.455 7.47 0.00 42.58 2.57
226 227 1.131126 CGCTCGAAGCACCAAATTCAT 59.869 47.619 7.47 0.00 42.58 2.57
227 228 0.516877 CGCTCGAAGCACCAAATTCA 59.483 50.000 7.47 0.00 42.58 2.57
228 229 0.794605 GCGCTCGAAGCACCAAATTC 60.795 55.000 0.00 0.00 42.58 2.17
229 230 1.210155 GCGCTCGAAGCACCAAATT 59.790 52.632 0.00 0.00 42.58 1.82
230 231 2.690778 GGCGCTCGAAGCACCAAAT 61.691 57.895 7.64 0.00 42.78 2.32
231 232 3.353836 GGCGCTCGAAGCACCAAA 61.354 61.111 7.64 0.00 42.78 3.28
232 233 3.825160 AAGGCGCTCGAAGCACCAA 62.825 57.895 7.64 0.00 45.58 3.67
233 234 3.825160 AAAGGCGCTCGAAGCACCA 62.825 57.895 7.64 0.00 45.58 4.17
234 235 2.617274 AAAAGGCGCTCGAAGCACC 61.617 57.895 7.64 9.64 43.57 5.01
235 236 1.441016 CAAAAGGCGCTCGAAGCAC 60.441 57.895 7.64 1.37 42.58 4.40
236 237 1.444119 AACAAAAGGCGCTCGAAGCA 61.444 50.000 7.64 0.00 42.58 3.91
237 238 0.998727 CAACAAAAGGCGCTCGAAGC 60.999 55.000 7.64 4.14 38.02 3.86
238 239 0.307760 ACAACAAAAGGCGCTCGAAG 59.692 50.000 7.64 0.00 0.00 3.79
239 240 0.736053 AACAACAAAAGGCGCTCGAA 59.264 45.000 7.64 0.00 0.00 3.71
240 241 0.306533 GAACAACAAAAGGCGCTCGA 59.693 50.000 7.64 0.00 0.00 4.04
241 242 0.028770 TGAACAACAAAAGGCGCTCG 59.971 50.000 7.64 0.00 0.00 5.03
242 243 2.202295 TTGAACAACAAAAGGCGCTC 57.798 45.000 7.64 0.00 35.39 5.03
243 244 2.663826 TTTGAACAACAAAAGGCGCT 57.336 40.000 7.64 0.00 44.16 5.92
262 263 6.548622 GGTCCTAAAACTACTTGAGGGTTTTT 59.451 38.462 16.18 6.66 41.43 1.94
263 264 6.066690 GGTCCTAAAACTACTTGAGGGTTTT 58.933 40.000 15.65 15.65 42.95 2.43
264 265 5.133153 TGGTCCTAAAACTACTTGAGGGTTT 59.867 40.000 0.00 0.00 35.11 3.27
265 266 4.661709 TGGTCCTAAAACTACTTGAGGGTT 59.338 41.667 0.00 0.00 0.00 4.11
266 267 4.237018 TGGTCCTAAAACTACTTGAGGGT 58.763 43.478 0.00 0.00 0.00 4.34
267 268 4.286291 ACTGGTCCTAAAACTACTTGAGGG 59.714 45.833 0.00 0.00 0.00 4.30
268 269 5.011738 TCACTGGTCCTAAAACTACTTGAGG 59.988 44.000 0.00 0.00 0.00 3.86
269 270 6.097915 TCACTGGTCCTAAAACTACTTGAG 57.902 41.667 0.00 0.00 0.00 3.02
270 271 6.497259 AGATCACTGGTCCTAAAACTACTTGA 59.503 38.462 0.00 0.00 0.00 3.02
271 272 6.702329 AGATCACTGGTCCTAAAACTACTTG 58.298 40.000 0.00 0.00 0.00 3.16
272 273 6.726764 AGAGATCACTGGTCCTAAAACTACTT 59.273 38.462 0.00 0.00 0.00 2.24
273 274 6.257586 AGAGATCACTGGTCCTAAAACTACT 58.742 40.000 0.00 0.00 0.00 2.57
274 275 6.532988 AGAGATCACTGGTCCTAAAACTAC 57.467 41.667 0.00 0.00 0.00 2.73
275 276 7.411808 AGTAGAGATCACTGGTCCTAAAACTA 58.588 38.462 2.56 0.00 0.00 2.24
276 277 6.257586 AGTAGAGATCACTGGTCCTAAAACT 58.742 40.000 2.56 0.00 0.00 2.66
277 278 6.406065 GGAGTAGAGATCACTGGTCCTAAAAC 60.406 46.154 12.55 0.00 0.00 2.43
278 279 5.657302 GGAGTAGAGATCACTGGTCCTAAAA 59.343 44.000 12.55 0.00 0.00 1.52
279 280 5.044030 AGGAGTAGAGATCACTGGTCCTAAA 60.044 44.000 17.93 0.00 34.12 1.85
280 281 4.479056 AGGAGTAGAGATCACTGGTCCTAA 59.521 45.833 17.93 0.00 34.12 2.69
281 282 4.048600 AGGAGTAGAGATCACTGGTCCTA 58.951 47.826 17.93 0.00 34.12 2.94
282 283 2.856231 AGGAGTAGAGATCACTGGTCCT 59.144 50.000 15.24 15.24 32.33 3.85
283 284 3.306472 AGGAGTAGAGATCACTGGTCC 57.694 52.381 12.13 12.13 0.00 4.46
284 285 5.830991 ACATTAGGAGTAGAGATCACTGGTC 59.169 44.000 2.56 0.00 0.00 4.02
285 286 5.772004 ACATTAGGAGTAGAGATCACTGGT 58.228 41.667 2.56 0.00 0.00 4.00
286 287 6.068010 AGACATTAGGAGTAGAGATCACTGG 58.932 44.000 2.56 0.00 0.00 4.00
287 288 6.770303 TGAGACATTAGGAGTAGAGATCACTG 59.230 42.308 2.56 0.00 0.00 3.66
288 289 6.905736 TGAGACATTAGGAGTAGAGATCACT 58.094 40.000 0.00 0.00 0.00 3.41
289 290 6.770785 ACTGAGACATTAGGAGTAGAGATCAC 59.229 42.308 0.00 0.00 0.00 3.06
290 291 6.905736 ACTGAGACATTAGGAGTAGAGATCA 58.094 40.000 0.00 0.00 0.00 2.92
291 292 7.255451 CCAACTGAGACATTAGGAGTAGAGATC 60.255 44.444 0.00 0.00 0.00 2.75
341 342 3.760035 CGGGTGAGGTGGGACGAG 61.760 72.222 0.00 0.00 0.00 4.18
385 387 1.081092 CTGAGGGGAAGGTGGGAGA 59.919 63.158 0.00 0.00 0.00 3.71
430 432 2.325082 GCGTGTGCGGGACTCAATT 61.325 57.895 0.31 0.00 38.78 2.32
472 474 7.475137 TCCATGGTTTATTTTCGATCCTTTT 57.525 32.000 12.58 0.00 0.00 2.27
493 495 2.512910 ACCATCATAGGTGGGATCCA 57.487 50.000 15.23 0.00 41.30 3.41
536 539 4.193240 AGGTGGGACAAATAAAACCAGT 57.807 40.909 0.00 0.00 44.16 4.00
715 1842 4.626081 GCTCGTGGTGGGCAGTGT 62.626 66.667 0.00 0.00 0.00 3.55
753 1880 3.241530 ACCCCGCTGACTTGCTCA 61.242 61.111 0.00 0.00 0.00 4.26
780 1907 1.970917 GAGATGTTGCCGTGGCGAAG 61.971 60.000 1.47 0.00 45.51 3.79
782 1909 2.434185 GAGATGTTGCCGTGGCGA 60.434 61.111 6.37 0.60 45.51 5.54
932 2059 1.446792 CATCAACCTCTCGCGCAGT 60.447 57.895 8.75 0.00 0.00 4.40
967 2094 2.437359 GAAGACGGCCTGCAGCAT 60.437 61.111 8.66 0.00 46.50 3.79
1011 2138 4.344865 GTGAAGGCCGGCTTCCCA 62.345 66.667 28.56 17.59 0.00 4.37
1137 2264 7.875041 AGCAATCATACATAGCGAGTAGAATTT 59.125 33.333 0.00 0.00 0.00 1.82
1318 2445 5.363580 ACATCAATTCAACAAGGTTTGGACT 59.636 36.000 0.00 0.00 34.12 3.85
1530 2657 0.846015 TACCTTGCCATCCATCCCAG 59.154 55.000 0.00 0.00 0.00 4.45
1564 2691 0.178767 TGGAGGCACAATCAGATCGG 59.821 55.000 0.00 0.00 0.00 4.18
1589 2716 2.186644 CGGTGGGCATCACGATGA 59.813 61.111 11.21 0.00 46.96 2.92
1613 2740 2.462255 CTTTGGTCGCAACGCAGCAT 62.462 55.000 0.00 0.00 0.00 3.79
1614 2741 3.179869 CTTTGGTCGCAACGCAGCA 62.180 57.895 0.00 0.00 0.00 4.41
1622 2749 4.966787 GGTGCCCCTTTGGTCGCA 62.967 66.667 0.00 0.00 36.04 5.10
1689 2816 4.397730 AGCACAAGAACACACAACATACAA 59.602 37.500 0.00 0.00 0.00 2.41
1764 2891 4.764823 TGTTAGCATTTCTCGGTCCAATTT 59.235 37.500 0.00 0.00 0.00 1.82
1773 2900 3.131223 TCCTCCTCTGTTAGCATTTCTCG 59.869 47.826 0.00 0.00 0.00 4.04
1999 3126 7.228507 GCATTTTCCTTTTTCCCAAGTAACAAT 59.771 33.333 0.00 0.00 0.00 2.71
2231 3359 1.415659 AGGGGAGCATCTCTTCATTCG 59.584 52.381 0.00 0.00 34.46 3.34
2331 3486 1.358787 TCCATCCCCAAACAATGAGCT 59.641 47.619 0.00 0.00 0.00 4.09
2336 3491 0.251564 TGCGTCCATCCCCAAACAAT 60.252 50.000 0.00 0.00 0.00 2.71
2458 3613 0.748005 CTCGGGATTGGGCGTCATTT 60.748 55.000 0.00 0.00 0.00 2.32
2459 3614 1.153168 CTCGGGATTGGGCGTCATT 60.153 57.895 0.00 0.00 0.00 2.57
2467 3622 1.889105 CGTGCATCCTCGGGATTGG 60.889 63.158 2.97 0.00 39.79 3.16
2468 3623 1.143838 TCGTGCATCCTCGGGATTG 59.856 57.895 2.97 1.84 39.79 2.67
2469 3624 1.144057 GTCGTGCATCCTCGGGATT 59.856 57.895 2.97 0.00 39.79 3.01
3044 4628 5.506815 GGTTAGTGTTACAGAAAAGGGCAAC 60.507 44.000 0.00 0.00 0.00 4.17
3066 4650 5.905331 TGACACCATTCATCCTTCTATAGGT 59.095 40.000 0.00 0.00 45.03 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.