Multiple sequence alignment - TraesCS1A01G254200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G254200 chr1A 100.000 7757 0 0 1 7757 445877772 445885528 0.000000e+00 14325.0
1 TraesCS1A01G254200 chr1A 97.674 43 1 0 7594 7636 445885323 445885365 3.000000e-09 75.0
2 TraesCS1A01G254200 chr1A 97.674 43 1 0 7552 7594 445885365 445885407 3.000000e-09 75.0
3 TraesCS1A01G254200 chr1D 95.634 4741 141 32 1076 5761 345703261 345707990 0.000000e+00 7548.0
4 TraesCS1A01G254200 chr1D 97.055 1630 38 7 5784 7408 345708063 345709687 0.000000e+00 2736.0
5 TraesCS1A01G254200 chr1D 90.935 1070 51 27 1 1047 345701890 345702936 0.000000e+00 1397.0
6 TraesCS1A01G254200 chr1D 88.189 127 7 7 7637 7756 125746764 125746639 2.260000e-30 145.0
7 TraesCS1A01G254200 chr1D 90.411 73 5 2 7411 7481 345709775 345709847 2.300000e-15 95.3
8 TraesCS1A01G254200 chr1B 94.505 4058 139 33 542 4565 464717088 464713081 0.000000e+00 6181.0
9 TraesCS1A01G254200 chr1B 94.897 1607 65 10 5784 7385 464711678 464710084 0.000000e+00 2497.0
10 TraesCS1A01G254200 chr1B 86.193 507 17 15 3 486 464717559 464717083 4.180000e-137 499.0
11 TraesCS1A01G254200 chr1B 87.613 331 29 8 4584 4907 464713020 464712695 2.640000e-99 374.0
12 TraesCS1A01G254200 chr1B 78.351 388 48 24 5226 5603 464712266 464711905 1.310000e-52 219.0
13 TraesCS1A01G254200 chr7D 87.879 132 8 6 7632 7756 373582254 373582384 1.740000e-31 148.0
14 TraesCS1A01G254200 chr3D 88.281 128 9 4 7635 7756 255424676 255424549 1.740000e-31 148.0
15 TraesCS1A01G254200 chr3D 87.500 128 10 4 7635 7756 491960237 491960110 8.110000e-30 143.0
16 TraesCS1A01G254200 chr2A 88.281 128 9 4 7635 7756 532858042 532857915 1.740000e-31 148.0
17 TraesCS1A01G254200 chr6B 87.121 132 9 6 7632 7756 441052713 441052843 8.110000e-30 143.0
18 TraesCS1A01G254200 chr4D 87.500 128 10 5 7635 7756 324215541 324215414 8.110000e-30 143.0
19 TraesCS1A01G254200 chr5D 85.211 142 14 6 7621 7756 451067132 451067272 1.050000e-28 139.0
20 TraesCS1A01G254200 chr2D 85.612 139 13 6 7625 7756 132721779 132721641 1.050000e-28 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G254200 chr1A 445877772 445885528 7756 False 4825.000 14325 98.449333 1 7757 3 chr1A.!!$F1 7756
1 TraesCS1A01G254200 chr1D 345701890 345709847 7957 False 2944.075 7548 93.508750 1 7481 4 chr1D.!!$F1 7480
2 TraesCS1A01G254200 chr1B 464710084 464717559 7475 True 1954.000 6181 88.311800 3 7385 5 chr1B.!!$R1 7382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 882 0.178861 AGGGAGAAGCCAAGGGAAGA 60.179 55.000 0.00 0.0 38.95 2.87 F
841 883 0.254462 GGGAGAAGCCAAGGGAAGAG 59.746 60.000 0.00 0.0 38.95 2.85 F
948 1026 0.527385 GATGGTCGAGAGCTGACTGC 60.527 60.000 0.00 0.0 43.29 4.40 F
1554 1932 1.270678 GCCAACTAACCAAGTCGGAGT 60.271 52.381 0.00 0.0 33.67 3.85 F
2069 2454 1.394917 CATGTTCTGCTCGTTGGCTAC 59.605 52.381 0.00 0.0 0.00 3.58 F
2971 3367 0.037303 CCTCCACTGTGCATCCACTT 59.963 55.000 1.29 0.0 42.54 3.16 F
3270 3671 2.142356 ATGTTTTCCGGATCATGCCA 57.858 45.000 4.15 0.0 0.00 4.92 F
4993 5467 0.767375 AACTGCCAAGAAGCTCCTGA 59.233 50.000 0.00 0.0 0.00 3.86 F
5450 6060 1.605710 GCAAGCGATAAGTGATGCCAT 59.394 47.619 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 2060 1.979855 TCACCAAACTGTCCACCATG 58.020 50.000 0.00 0.00 0.00 3.66 R
2032 2417 2.095567 ACATGCTTGAAAGATGACGCAC 60.096 45.455 6.60 0.00 0.00 5.34 R
2632 3028 2.225242 TGGACCATACCCAATGTTTGCT 60.225 45.455 0.00 0.00 33.34 3.91 R
2971 3367 0.250684 TTCCCGCATTGTCAGCTTCA 60.251 50.000 0.00 0.00 0.00 3.02 R
3987 4395 0.957395 ATTGAACTGGCTCAGCGGTG 60.957 55.000 8.67 8.67 34.37 4.94 R
4396 4804 3.430453 TCTCAATTTCCCCACCATGAAC 58.570 45.455 0.00 0.00 0.00 3.18 R
5211 5689 2.536066 AGTTACAGGGGCCCAAAATTC 58.464 47.619 27.72 9.62 0.00 2.17 R
5823 6544 1.000385 TGAAATTGTCGGCTTGCAAGG 60.000 47.619 27.10 12.18 0.00 3.61 R
7329 8058 1.197036 CTGAGCATGCAACACAGACAG 59.803 52.381 21.98 11.13 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.119708 AGCAAAGCAACGAATCTGAATCC 60.120 43.478 0.00 0.00 0.00 3.01
66 67 1.332997 GAATCTGAATCCGGCAAGCTG 59.667 52.381 0.00 0.00 0.00 4.24
100 101 4.404098 CCCAGCACGGTACCACCC 62.404 72.222 13.54 0.00 33.75 4.61
103 104 4.651516 AGCACGGTACCACCCCCT 62.652 66.667 13.54 0.00 33.75 4.79
105 106 3.766691 CACGGTACCACCCCCTCG 61.767 72.222 13.54 0.00 33.75 4.63
107 108 2.999063 CGGTACCACCCCCTCGTT 60.999 66.667 13.54 0.00 33.75 3.85
118 120 0.659123 CCCCTCGTTTTTCAAACGCG 60.659 55.000 15.29 3.53 42.80 6.01
175 182 0.190069 AGAGTATATCCGCCCACCCA 59.810 55.000 0.00 0.00 0.00 4.51
176 183 0.320697 GAGTATATCCGCCCACCCAC 59.679 60.000 0.00 0.00 0.00 4.61
177 184 1.125711 AGTATATCCGCCCACCCACC 61.126 60.000 0.00 0.00 0.00 4.61
178 185 1.074395 TATATCCGCCCACCCACCA 60.074 57.895 0.00 0.00 0.00 4.17
179 186 1.125093 TATATCCGCCCACCCACCAG 61.125 60.000 0.00 0.00 0.00 4.00
257 269 1.303091 ACGCCAACAACGGGATAAGC 61.303 55.000 0.00 0.00 34.00 3.09
303 332 3.994853 GTGCAACCCAAGCCTGGC 61.995 66.667 11.65 11.65 41.99 4.85
402 432 2.607635 CGGCGCAGATAATAAACAGTGT 59.392 45.455 10.83 0.00 0.00 3.55
404 434 4.269123 CGGCGCAGATAATAAACAGTGTAA 59.731 41.667 10.83 0.00 0.00 2.41
405 435 5.220510 CGGCGCAGATAATAAACAGTGTAAA 60.221 40.000 10.83 0.00 0.00 2.01
524 554 3.621214 CGGGTGAAAGAGAGAGAGAGAGA 60.621 52.174 0.00 0.00 0.00 3.10
531 561 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
532 562 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
539 569 1.421646 GAGAGAGAGAGGGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
540 570 1.010793 AGAGAGAGAGGGAGGGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
541 571 1.421646 GAGAGAGAGGGAGGGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
542 572 0.478507 GAGAGAGGGAGGGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
543 573 0.998945 AGAGAGGGAGGGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
544 574 2.018086 AGAGGGAGGGAGAGAGGGG 61.018 68.421 0.00 0.00 0.00 4.79
545 575 2.015726 GAGGGAGGGAGAGAGGGGA 61.016 68.421 0.00 0.00 0.00 4.81
546 576 2.018086 AGGGAGGGAGAGAGGGGAG 61.018 68.421 0.00 0.00 0.00 4.30
795 826 0.317269 CACACGAAAGCAACAGCCAG 60.317 55.000 0.00 0.00 0.00 4.85
834 876 3.342719 GAGAGAAAAGGGAGAAGCCAAG 58.657 50.000 0.00 0.00 38.95 3.61
835 877 2.040947 AGAGAAAAGGGAGAAGCCAAGG 59.959 50.000 0.00 0.00 38.95 3.61
836 878 1.076187 AGAAAAGGGAGAAGCCAAGGG 59.924 52.381 0.00 0.00 38.95 3.95
837 879 1.075536 GAAAAGGGAGAAGCCAAGGGA 59.924 52.381 0.00 0.00 38.95 4.20
838 880 1.158007 AAAGGGAGAAGCCAAGGGAA 58.842 50.000 0.00 0.00 38.95 3.97
839 881 0.701147 AAGGGAGAAGCCAAGGGAAG 59.299 55.000 0.00 0.00 38.95 3.46
840 882 0.178861 AGGGAGAAGCCAAGGGAAGA 60.179 55.000 0.00 0.00 38.95 2.87
841 883 0.254462 GGGAGAAGCCAAGGGAAGAG 59.746 60.000 0.00 0.00 38.95 2.85
842 884 0.254462 GGAGAAGCCAAGGGAAGAGG 59.746 60.000 0.00 0.00 36.34 3.69
843 885 1.280457 GAGAAGCCAAGGGAAGAGGA 58.720 55.000 0.00 0.00 0.00 3.71
873 934 1.202818 GGAGTTGTTGGCTCTGGTTCT 60.203 52.381 0.00 0.00 33.73 3.01
874 935 1.876156 GAGTTGTTGGCTCTGGTTCTG 59.124 52.381 0.00 0.00 0.00 3.02
875 936 0.954452 GTTGTTGGCTCTGGTTCTGG 59.046 55.000 0.00 0.00 0.00 3.86
876 937 0.550914 TTGTTGGCTCTGGTTCTGGT 59.449 50.000 0.00 0.00 0.00 4.00
877 938 0.550914 TGTTGGCTCTGGTTCTGGTT 59.449 50.000 0.00 0.00 0.00 3.67
878 939 1.239347 GTTGGCTCTGGTTCTGGTTC 58.761 55.000 0.00 0.00 0.00 3.62
887 954 2.027625 GTTCTGGTTCCGGTCTGCG 61.028 63.158 0.00 0.00 0.00 5.18
914 981 3.430497 CGGAGGAGAGGGGAGGGA 61.430 72.222 0.00 0.00 0.00 4.20
948 1026 0.527385 GATGGTCGAGAGCTGACTGC 60.527 60.000 0.00 0.00 43.29 4.40
1495 1873 2.803956 TGGTCTGTCAGTAATCCGACT 58.196 47.619 0.00 0.00 33.18 4.18
1554 1932 1.270678 GCCAACTAACCAAGTCGGAGT 60.271 52.381 0.00 0.00 33.67 3.85
1557 1935 2.719426 ACTAACCAAGTCGGAGTTCG 57.281 50.000 0.00 0.00 38.63 3.95
1675 2056 9.331282 ACAATGGATGAAATTCTAGTTAGCTAC 57.669 33.333 0.00 0.00 0.00 3.58
1679 2060 9.982651 TGGATGAAATTCTAGTTAGCTACATAC 57.017 33.333 0.00 0.00 0.00 2.39
1680 2061 9.982651 GGATGAAATTCTAGTTAGCTACATACA 57.017 33.333 0.00 0.00 0.00 2.29
1693 2075 4.019321 AGCTACATACATGGTGGACAGTTT 60.019 41.667 0.00 0.00 0.00 2.66
1795 2177 5.653769 ACATCCATGCTACATTTAAGCTTGT 59.346 36.000 9.86 0.90 41.24 3.16
1816 2198 6.134535 TGTGTTAGGATGGTATGTTTCCTT 57.865 37.500 0.00 0.00 40.37 3.36
1932 2317 5.752472 GCTCTTAATTCCTTAACCTACCGTC 59.248 44.000 0.00 0.00 0.00 4.79
1967 2352 5.779529 ATCTTTGCAAATTCACTGACAGT 57.220 34.783 13.23 1.07 0.00 3.55
2032 2417 6.182039 TGGATTTGACAAATTAGAGCTTCG 57.818 37.500 14.46 0.00 0.00 3.79
2034 2419 6.024049 GGATTTGACAAATTAGAGCTTCGTG 58.976 40.000 14.46 0.00 0.00 4.35
2069 2454 1.394917 CATGTTCTGCTCGTTGGCTAC 59.605 52.381 0.00 0.00 0.00 3.58
2174 2559 2.073252 TACAAATGCAACCCACACCA 57.927 45.000 0.00 0.00 0.00 4.17
2316 2701 4.265073 GGATACAAGCACTGAACCTCAAT 58.735 43.478 0.00 0.00 0.00 2.57
2330 2715 3.771216 ACCTCAATCTGGAAACTGCATT 58.229 40.909 0.00 0.00 0.00 3.56
2378 2763 6.948886 TCTACTCTTTGAAGTCTCACACCTAT 59.051 38.462 0.00 0.00 0.00 2.57
2399 2784 4.123497 TGTACATGTTCTCAGATTCCGG 57.877 45.455 2.30 0.00 0.00 5.14
2456 2841 4.152625 GCCGTAGCACTTGCAGCG 62.153 66.667 3.62 7.16 45.16 5.18
2474 2862 2.949644 AGCGCAAGTAAGTTCTTGGTTT 59.050 40.909 11.47 0.00 43.26 3.27
2605 3001 4.316205 TGAGAACAAGTTCAGCGTCTTA 57.684 40.909 14.69 0.00 41.84 2.10
2677 3073 3.072330 TGTCTGTTGGCTCAAGATGGTTA 59.928 43.478 0.00 0.00 0.00 2.85
2697 3093 2.355010 GCTTATGCTCCCAATGGTCT 57.645 50.000 0.00 0.00 36.03 3.85
2701 3097 4.780815 CTTATGCTCCCAATGGTCTTGTA 58.219 43.478 0.00 0.00 0.00 2.41
2890 3286 3.876914 TGTCAAAGTACTGCCAAGAACTG 59.123 43.478 0.00 0.00 0.00 3.16
2971 3367 0.037303 CCTCCACTGTGCATCCACTT 59.963 55.000 1.29 0.00 42.54 3.16
3198 3599 6.825721 CCAGTCCTATATCTGCTCTTTGTTTT 59.174 38.462 0.00 0.00 0.00 2.43
3270 3671 2.142356 ATGTTTTCCGGATCATGCCA 57.858 45.000 4.15 0.00 0.00 4.92
3987 4395 3.943381 TCCAAGATGATGAGTTGCATGTC 59.057 43.478 0.00 0.00 37.34 3.06
4293 4701 3.004106 GCCTGCAATGTCTTGATACCATC 59.996 47.826 0.00 0.00 34.04 3.51
4518 4926 6.945218 TGAGCAAAATAGGTAATGCCAAATT 58.055 32.000 0.00 0.00 39.59 1.82
4536 4944 9.504708 TGCCAAATTATCATGAAAGAAAAATGT 57.495 25.926 0.00 0.00 0.00 2.71
4565 4982 8.644318 TCTAGTCTTTTCTGTTTGTTGTCTAC 57.356 34.615 0.00 0.00 0.00 2.59
4592 5009 2.462456 TCTCTGTTAGTTGCTGGCTG 57.538 50.000 0.00 0.00 0.00 4.85
4599 5016 2.749621 GTTAGTTGCTGGCTGCTTATGT 59.250 45.455 17.45 0.98 43.37 2.29
4715 5177 3.460857 AGAACATCTCTGCCGGTAATC 57.539 47.619 1.90 0.00 31.12 1.75
4907 5370 9.671279 TCAGCAATTTCTAGTTTGAAGATATCA 57.329 29.630 5.32 0.00 35.85 2.15
4993 5467 0.767375 AACTGCCAAGAAGCTCCTGA 59.233 50.000 0.00 0.00 0.00 3.86
5017 5491 4.934001 AGCAATCACACTATTCTGTCACTG 59.066 41.667 0.00 0.00 0.00 3.66
5096 5574 9.877178 AAAGTATTGATTCTACCTGTCTAACTG 57.123 33.333 0.00 0.00 0.00 3.16
5097 5575 8.012957 AGTATTGATTCTACCTGTCTAACTGG 57.987 38.462 1.88 1.88 42.22 4.00
5105 5583 3.507411 ACCTGTCTAACTGGCTTGTCTA 58.493 45.455 3.22 0.00 40.43 2.59
5191 5669 7.865706 AAGGATTATGTTTATCTGTGTCACC 57.134 36.000 0.00 0.00 0.00 4.02
5211 5689 7.011950 TGTCACCAAGTCTTGTTTATACTTGTG 59.988 37.037 11.61 8.67 45.51 3.33
5220 5698 9.191995 GTCTTGTTTATACTTGTGAATTTTGGG 57.808 33.333 0.00 0.00 0.00 4.12
5285 5867 9.454859 CCCAAAATCTACCTAATGGATTATCTC 57.545 37.037 0.00 0.00 37.52 2.75
5450 6060 1.605710 GCAAGCGATAAGTGATGCCAT 59.394 47.619 0.00 0.00 0.00 4.40
5539 6151 6.769134 ATTTGACATCATCATCTGCTTGAA 57.231 33.333 0.00 0.00 37.11 2.69
5553 6165 5.702865 TCTGCTTGAAGTTTGCATATGAAC 58.297 37.500 6.97 2.94 36.07 3.18
5566 6178 3.181507 GCATATGAACGTGTCATGCTTGT 60.182 43.478 17.82 1.14 46.85 3.16
5682 6353 6.491714 ACTCATAGTCATAGTGCTGGAAAT 57.508 37.500 0.00 0.00 0.00 2.17
5685 6356 8.147058 ACTCATAGTCATAGTGCTGGAAATAAG 58.853 37.037 0.00 0.00 0.00 1.73
5719 6390 7.840931 AGATAAACAGGGCAAAGGAAATAAAG 58.159 34.615 0.00 0.00 0.00 1.85
5862 6583 3.489355 TCAGAATGCATTATCCGCCATT 58.511 40.909 12.97 0.00 34.76 3.16
6113 6839 3.448301 TGGATATGCTGCCAAAGGAAAAG 59.552 43.478 0.00 0.00 0.00 2.27
6203 6929 4.568072 TGGCTATGTGTCTACACCAAAT 57.432 40.909 10.58 0.97 45.88 2.32
6238 6964 2.371179 CCACCATCATGCCTCAGTCTAT 59.629 50.000 0.00 0.00 0.00 1.98
6263 6989 3.075283 AGGGTGTGGATTGTTTACCATCA 59.925 43.478 0.00 0.00 38.48 3.07
6406 7132 4.074970 GGTGCCATTACTGATATCCCAAG 58.925 47.826 0.00 0.00 0.00 3.61
6426 7152 3.681835 GAGGTCACACGGGCGTCT 61.682 66.667 0.00 0.00 0.00 4.18
6663 7390 4.449743 GTGAAGAAGGTAATACACAACGCA 59.550 41.667 0.00 0.00 0.00 5.24
6739 7466 1.718396 TTGCGCTGATCTCTGTTCTG 58.282 50.000 9.73 0.00 0.00 3.02
6919 7647 6.134535 TGGTACATATTTGGAAGGTGAAGT 57.865 37.500 0.00 0.00 0.00 3.01
7309 8038 4.905412 AGATTTCTGTTTACGAAGTCGC 57.095 40.909 0.00 0.00 43.93 5.19
7316 8045 4.855388 TCTGTTTACGAAGTCGCTATGTTC 59.145 41.667 0.00 0.00 43.93 3.18
7317 8046 4.801891 TGTTTACGAAGTCGCTATGTTCT 58.198 39.130 0.00 0.00 43.93 3.01
7318 8047 4.619760 TGTTTACGAAGTCGCTATGTTCTG 59.380 41.667 0.00 0.00 43.93 3.02
7329 8058 3.308323 CGCTATGTTCTGCTCTTCCTTTC 59.692 47.826 0.00 0.00 0.00 2.62
7333 8062 3.733337 TGTTCTGCTCTTCCTTTCTGTC 58.267 45.455 0.00 0.00 0.00 3.51
7393 8122 3.290948 TTACAAGTGGCTTCTGGTGTT 57.709 42.857 1.65 0.00 0.00 3.32
7394 8123 1.392589 ACAAGTGGCTTCTGGTGTTG 58.607 50.000 0.00 0.00 0.00 3.33
7403 8132 4.263905 TGGCTTCTGGTGTTGGAAGATAAT 60.264 41.667 6.85 0.00 40.74 1.28
7408 8137 7.201652 GCTTCTGGTGTTGGAAGATAATTAGTC 60.202 40.741 6.85 0.00 40.74 2.59
7414 8228 6.371548 GTGTTGGAAGATAATTAGTCACAGCA 59.628 38.462 0.00 0.00 0.00 4.41
7429 8243 5.082059 GTCACAGCATTTTCTGTATGTTCG 58.918 41.667 0.00 0.00 44.81 3.95
7430 8244 3.848019 CACAGCATTTTCTGTATGTTCGC 59.152 43.478 0.00 0.00 44.81 4.70
7433 8247 4.556135 CAGCATTTTCTGTATGTTCGCAAG 59.444 41.667 0.00 0.00 0.00 4.01
7474 8288 4.574674 ACATGTGTGGGATGTGTCTATT 57.425 40.909 0.00 0.00 32.68 1.73
7476 8290 6.061022 ACATGTGTGGGATGTGTCTATTTA 57.939 37.500 0.00 0.00 32.68 1.40
7477 8291 6.115446 ACATGTGTGGGATGTGTCTATTTAG 58.885 40.000 0.00 0.00 32.68 1.85
7478 8292 4.513442 TGTGTGGGATGTGTCTATTTAGC 58.487 43.478 0.00 0.00 0.00 3.09
7479 8293 4.019771 TGTGTGGGATGTGTCTATTTAGCA 60.020 41.667 0.00 0.00 0.00 3.49
7480 8294 4.941263 GTGTGGGATGTGTCTATTTAGCAA 59.059 41.667 0.00 0.00 0.00 3.91
7481 8295 5.065218 GTGTGGGATGTGTCTATTTAGCAAG 59.935 44.000 0.00 0.00 0.00 4.01
7482 8296 5.186198 GTGGGATGTGTCTATTTAGCAAGT 58.814 41.667 0.00 0.00 0.00 3.16
7483 8297 5.294552 GTGGGATGTGTCTATTTAGCAAGTC 59.705 44.000 0.00 0.00 0.00 3.01
7484 8298 5.189736 TGGGATGTGTCTATTTAGCAAGTCT 59.810 40.000 0.00 0.00 0.00 3.24
7485 8299 5.525378 GGGATGTGTCTATTTAGCAAGTCTG 59.475 44.000 0.00 0.00 0.00 3.51
7486 8300 5.525378 GGATGTGTCTATTTAGCAAGTCTGG 59.475 44.000 0.00 0.00 0.00 3.86
7487 8301 5.483685 TGTGTCTATTTAGCAAGTCTGGT 57.516 39.130 0.00 0.00 37.06 4.00
7488 8302 5.237815 TGTGTCTATTTAGCAAGTCTGGTG 58.762 41.667 0.00 0.00 34.40 4.17
7489 8303 5.221641 TGTGTCTATTTAGCAAGTCTGGTGT 60.222 40.000 0.00 0.00 34.40 4.16
7490 8304 5.120830 GTGTCTATTTAGCAAGTCTGGTGTG 59.879 44.000 0.00 0.00 34.40 3.82
7491 8305 5.011635 TGTCTATTTAGCAAGTCTGGTGTGA 59.988 40.000 0.00 0.00 34.40 3.58
7492 8306 5.932303 GTCTATTTAGCAAGTCTGGTGTGAA 59.068 40.000 0.00 0.00 34.40 3.18
7493 8307 6.595716 GTCTATTTAGCAAGTCTGGTGTGAAT 59.404 38.462 0.00 0.00 34.40 2.57
7494 8308 7.119846 GTCTATTTAGCAAGTCTGGTGTGAATT 59.880 37.037 0.00 0.00 34.40 2.17
7495 8309 6.655078 ATTTAGCAAGTCTGGTGTGAATTT 57.345 33.333 0.00 0.00 34.40 1.82
7496 8310 3.996150 AGCAAGTCTGGTGTGAATTTG 57.004 42.857 0.00 0.00 0.00 2.32
7497 8311 2.624838 AGCAAGTCTGGTGTGAATTTGG 59.375 45.455 0.00 0.00 0.00 3.28
7498 8312 2.288395 GCAAGTCTGGTGTGAATTTGGG 60.288 50.000 0.00 0.00 0.00 4.12
7499 8313 2.292828 AGTCTGGTGTGAATTTGGGG 57.707 50.000 0.00 0.00 0.00 4.96
7500 8314 0.603065 GTCTGGTGTGAATTTGGGGC 59.397 55.000 0.00 0.00 0.00 5.80
7501 8315 0.187117 TCTGGTGTGAATTTGGGGCA 59.813 50.000 0.00 0.00 0.00 5.36
7502 8316 0.604578 CTGGTGTGAATTTGGGGCAG 59.395 55.000 0.00 0.00 0.00 4.85
7503 8317 0.831288 TGGTGTGAATTTGGGGCAGG 60.831 55.000 0.00 0.00 0.00 4.85
7504 8318 1.293179 GTGTGAATTTGGGGCAGGC 59.707 57.895 0.00 0.00 0.00 4.85
7505 8319 1.155859 TGTGAATTTGGGGCAGGCT 59.844 52.632 0.00 0.00 0.00 4.58
7506 8320 0.471591 TGTGAATTTGGGGCAGGCTT 60.472 50.000 0.00 0.00 0.00 4.35
7507 8321 0.686789 GTGAATTTGGGGCAGGCTTT 59.313 50.000 0.00 0.00 0.00 3.51
7508 8322 0.975887 TGAATTTGGGGCAGGCTTTC 59.024 50.000 0.00 0.00 0.00 2.62
7509 8323 0.975887 GAATTTGGGGCAGGCTTTCA 59.024 50.000 0.00 0.00 0.00 2.69
7510 8324 0.978907 AATTTGGGGCAGGCTTTCAG 59.021 50.000 0.00 0.00 0.00 3.02
7511 8325 0.906282 ATTTGGGGCAGGCTTTCAGG 60.906 55.000 0.00 0.00 0.00 3.86
7512 8326 3.528217 TTGGGGCAGGCTTTCAGGG 62.528 63.158 0.00 0.00 0.00 4.45
7513 8327 3.984732 GGGGCAGGCTTTCAGGGT 61.985 66.667 0.00 0.00 0.00 4.34
7514 8328 2.612493 GGGGCAGGCTTTCAGGGTA 61.612 63.158 0.00 0.00 0.00 3.69
7515 8329 1.615262 GGGCAGGCTTTCAGGGTAT 59.385 57.895 0.00 0.00 0.00 2.73
7516 8330 0.843984 GGGCAGGCTTTCAGGGTATA 59.156 55.000 0.00 0.00 0.00 1.47
7517 8331 1.425448 GGGCAGGCTTTCAGGGTATAT 59.575 52.381 0.00 0.00 0.00 0.86
7518 8332 2.158460 GGGCAGGCTTTCAGGGTATATT 60.158 50.000 0.00 0.00 0.00 1.28
7519 8333 3.149981 GGCAGGCTTTCAGGGTATATTC 58.850 50.000 0.00 0.00 0.00 1.75
7520 8334 3.149981 GCAGGCTTTCAGGGTATATTCC 58.850 50.000 0.00 0.00 0.00 3.01
7535 8349 2.446994 TCCCACGTGGAACCACCT 60.447 61.111 36.07 4.25 41.40 4.00
7536 8350 2.073716 TCCCACGTGGAACCACCTT 61.074 57.895 36.07 3.09 41.40 3.50
7537 8351 1.896660 CCCACGTGGAACCACCTTG 60.897 63.158 36.07 11.77 43.49 3.61
7538 8352 1.153046 CCACGTGGAACCACCTTGT 60.153 57.895 31.31 7.61 43.49 3.16
7539 8353 0.750182 CCACGTGGAACCACCTTGTT 60.750 55.000 31.31 0.00 43.49 2.83
7540 8354 0.661020 CACGTGGAACCACCTTGTTC 59.339 55.000 16.85 0.00 43.49 3.18
7546 8360 2.768833 GAACCACCTTGTTCCGTTTC 57.231 50.000 0.00 0.00 38.94 2.78
7547 8361 2.018515 GAACCACCTTGTTCCGTTTCA 58.981 47.619 0.00 0.00 38.94 2.69
7548 8362 1.385528 ACCACCTTGTTCCGTTTCAC 58.614 50.000 0.00 0.00 0.00 3.18
7549 8363 1.064979 ACCACCTTGTTCCGTTTCACT 60.065 47.619 0.00 0.00 0.00 3.41
7550 8364 1.602377 CCACCTTGTTCCGTTTCACTC 59.398 52.381 0.00 0.00 0.00 3.51
7551 8365 2.285083 CACCTTGTTCCGTTTCACTCA 58.715 47.619 0.00 0.00 0.00 3.41
7552 8366 2.031683 CACCTTGTTCCGTTTCACTCAC 59.968 50.000 0.00 0.00 0.00 3.51
7553 8367 2.093128 ACCTTGTTCCGTTTCACTCACT 60.093 45.455 0.00 0.00 0.00 3.41
7554 8368 2.544267 CCTTGTTCCGTTTCACTCACTC 59.456 50.000 0.00 0.00 0.00 3.51
7555 8369 3.458189 CTTGTTCCGTTTCACTCACTCT 58.542 45.455 0.00 0.00 0.00 3.24
7556 8370 3.536956 TGTTCCGTTTCACTCACTCTT 57.463 42.857 0.00 0.00 0.00 2.85
7557 8371 3.454375 TGTTCCGTTTCACTCACTCTTC 58.546 45.455 0.00 0.00 0.00 2.87
7558 8372 2.801111 GTTCCGTTTCACTCACTCTTCC 59.199 50.000 0.00 0.00 0.00 3.46
7559 8373 1.343465 TCCGTTTCACTCACTCTTCCC 59.657 52.381 0.00 0.00 0.00 3.97
7560 8374 1.419374 CGTTTCACTCACTCTTCCCG 58.581 55.000 0.00 0.00 0.00 5.14
7561 8375 1.000607 CGTTTCACTCACTCTTCCCGA 60.001 52.381 0.00 0.00 0.00 5.14
7562 8376 2.352814 CGTTTCACTCACTCTTCCCGAT 60.353 50.000 0.00 0.00 0.00 4.18
7563 8377 3.119602 CGTTTCACTCACTCTTCCCGATA 60.120 47.826 0.00 0.00 0.00 2.92
7564 8378 4.617530 CGTTTCACTCACTCTTCCCGATAA 60.618 45.833 0.00 0.00 0.00 1.75
7565 8379 5.420409 GTTTCACTCACTCTTCCCGATAAT 58.580 41.667 0.00 0.00 0.00 1.28
7566 8380 4.920640 TCACTCACTCTTCCCGATAATC 57.079 45.455 0.00 0.00 0.00 1.75
7567 8381 3.315470 TCACTCACTCTTCCCGATAATCG 59.685 47.826 0.00 0.00 40.07 3.34
7577 8391 2.222592 CGATAATCGGTTGTCGGGC 58.777 57.895 18.57 0.00 42.84 6.13
7578 8392 1.219522 CGATAATCGGTTGTCGGGCC 61.220 60.000 18.57 0.00 42.84 5.80
7579 8393 0.106149 GATAATCGGTTGTCGGGCCT 59.894 55.000 0.84 0.00 39.77 5.19
7580 8394 0.106149 ATAATCGGTTGTCGGGCCTC 59.894 55.000 0.84 0.00 39.77 4.70
7581 8395 0.974010 TAATCGGTTGTCGGGCCTCT 60.974 55.000 0.84 0.00 39.77 3.69
7582 8396 1.838073 AATCGGTTGTCGGGCCTCTT 61.838 55.000 0.84 0.00 39.77 2.85
7583 8397 1.838073 ATCGGTTGTCGGGCCTCTTT 61.838 55.000 0.84 0.00 39.77 2.52
7584 8398 1.599797 CGGTTGTCGGGCCTCTTTT 60.600 57.895 0.84 0.00 34.75 2.27
7585 8399 0.320946 CGGTTGTCGGGCCTCTTTTA 60.321 55.000 0.84 0.00 34.75 1.52
7586 8400 1.878948 CGGTTGTCGGGCCTCTTTTAA 60.879 52.381 0.84 0.00 34.75 1.52
7587 8401 2.443416 GGTTGTCGGGCCTCTTTTAAT 58.557 47.619 0.84 0.00 0.00 1.40
7588 8402 3.613030 GGTTGTCGGGCCTCTTTTAATA 58.387 45.455 0.84 0.00 0.00 0.98
7589 8403 4.011698 GGTTGTCGGGCCTCTTTTAATAA 58.988 43.478 0.84 0.00 0.00 1.40
7590 8404 4.460034 GGTTGTCGGGCCTCTTTTAATAAA 59.540 41.667 0.84 0.00 0.00 1.40
7591 8405 5.126545 GGTTGTCGGGCCTCTTTTAATAAAT 59.873 40.000 0.84 0.00 0.00 1.40
7592 8406 6.350696 GGTTGTCGGGCCTCTTTTAATAAATT 60.351 38.462 0.84 0.00 0.00 1.82
7593 8407 7.148035 GGTTGTCGGGCCTCTTTTAATAAATTA 60.148 37.037 0.84 0.00 0.00 1.40
7594 8408 7.324354 TGTCGGGCCTCTTTTAATAAATTAC 57.676 36.000 0.84 0.00 0.00 1.89
7595 8409 7.114095 TGTCGGGCCTCTTTTAATAAATTACT 58.886 34.615 0.84 0.00 0.00 2.24
7596 8410 7.281549 TGTCGGGCCTCTTTTAATAAATTACTC 59.718 37.037 0.84 0.00 0.00 2.59
7597 8411 7.498239 GTCGGGCCTCTTTTAATAAATTACTCT 59.502 37.037 0.84 0.00 0.00 3.24
7598 8412 8.050930 TCGGGCCTCTTTTAATAAATTACTCTT 58.949 33.333 0.84 0.00 0.00 2.85
7599 8413 8.343366 CGGGCCTCTTTTAATAAATTACTCTTC 58.657 37.037 0.84 0.00 0.00 2.87
7600 8414 8.630917 GGGCCTCTTTTAATAAATTACTCTTCC 58.369 37.037 0.84 0.00 0.00 3.46
7601 8415 8.630917 GGCCTCTTTTAATAAATTACTCTTCCC 58.369 37.037 0.00 0.00 0.00 3.97
7602 8416 8.343366 GCCTCTTTTAATAAATTACTCTTCCCG 58.657 37.037 0.00 0.00 0.00 5.14
7603 8417 9.609346 CCTCTTTTAATAAATTACTCTTCCCGA 57.391 33.333 0.00 0.00 0.00 5.14
7619 8433 2.222592 CGATAATCGGTTGTCGGGC 58.777 57.895 18.57 0.00 42.84 6.13
7620 8434 1.219522 CGATAATCGGTTGTCGGGCC 61.220 60.000 18.57 0.00 42.84 5.80
7621 8435 0.106149 GATAATCGGTTGTCGGGCCT 59.894 55.000 0.84 0.00 39.77 5.19
7622 8436 0.106149 ATAATCGGTTGTCGGGCCTC 59.894 55.000 0.84 0.00 39.77 4.70
7623 8437 0.974010 TAATCGGTTGTCGGGCCTCT 60.974 55.000 0.84 0.00 39.77 3.69
7624 8438 1.838073 AATCGGTTGTCGGGCCTCTT 61.838 55.000 0.84 0.00 39.77 2.85
7625 8439 1.838073 ATCGGTTGTCGGGCCTCTTT 61.838 55.000 0.84 0.00 39.77 2.52
7626 8440 2.033194 CGGTTGTCGGGCCTCTTTC 61.033 63.158 0.84 0.00 34.75 2.62
7627 8441 1.072505 GGTTGTCGGGCCTCTTTCA 59.927 57.895 0.84 0.00 0.00 2.69
7628 8442 0.536460 GGTTGTCGGGCCTCTTTCAA 60.536 55.000 0.84 0.00 0.00 2.69
7629 8443 1.534729 GTTGTCGGGCCTCTTTCAAT 58.465 50.000 0.84 0.00 0.00 2.57
7630 8444 2.617021 GGTTGTCGGGCCTCTTTCAATA 60.617 50.000 0.84 0.00 0.00 1.90
7631 8445 3.078837 GTTGTCGGGCCTCTTTCAATAA 58.921 45.455 0.84 0.00 0.00 1.40
7632 8446 3.426787 TGTCGGGCCTCTTTCAATAAA 57.573 42.857 0.84 0.00 0.00 1.40
7633 8447 3.963129 TGTCGGGCCTCTTTCAATAAAT 58.037 40.909 0.84 0.00 0.00 1.40
7634 8448 4.340617 TGTCGGGCCTCTTTCAATAAATT 58.659 39.130 0.84 0.00 0.00 1.82
7635 8449 5.502079 TGTCGGGCCTCTTTCAATAAATTA 58.498 37.500 0.84 0.00 0.00 1.40
7636 8450 5.588648 TGTCGGGCCTCTTTCAATAAATTAG 59.411 40.000 0.84 0.00 0.00 1.73
7637 8451 5.820947 GTCGGGCCTCTTTCAATAAATTAGA 59.179 40.000 0.84 0.00 0.00 2.10
7638 8452 6.317893 GTCGGGCCTCTTTCAATAAATTAGAA 59.682 38.462 0.84 0.00 0.00 2.10
7639 8453 6.317893 TCGGGCCTCTTTCAATAAATTAGAAC 59.682 38.462 0.84 0.00 0.00 3.01
7640 8454 6.094881 CGGGCCTCTTTCAATAAATTAGAACA 59.905 38.462 0.84 0.00 0.00 3.18
7641 8455 7.362574 CGGGCCTCTTTCAATAAATTAGAACAA 60.363 37.037 0.84 0.00 0.00 2.83
7642 8456 8.478066 GGGCCTCTTTCAATAAATTAGAACAAT 58.522 33.333 0.84 0.00 0.00 2.71
7643 8457 9.305925 GGCCTCTTTCAATAAATTAGAACAATG 57.694 33.333 0.00 0.00 0.00 2.82
7644 8458 8.811378 GCCTCTTTCAATAAATTAGAACAATGC 58.189 33.333 0.00 0.00 0.00 3.56
7645 8459 9.305925 CCTCTTTCAATAAATTAGAACAATGCC 57.694 33.333 0.00 0.00 0.00 4.40
7646 8460 9.305925 CTCTTTCAATAAATTAGAACAATGCCC 57.694 33.333 0.00 0.00 0.00 5.36
7647 8461 7.973388 TCTTTCAATAAATTAGAACAATGCCCG 59.027 33.333 0.00 0.00 0.00 6.13
7648 8462 5.587289 TCAATAAATTAGAACAATGCCCGC 58.413 37.500 0.00 0.00 0.00 6.13
7649 8463 2.959507 AAATTAGAACAATGCCCGCC 57.040 45.000 0.00 0.00 0.00 6.13
7650 8464 1.846007 AATTAGAACAATGCCCGCCA 58.154 45.000 0.00 0.00 0.00 5.69
7651 8465 1.392589 ATTAGAACAATGCCCGCCAG 58.607 50.000 0.00 0.00 0.00 4.85
7652 8466 0.037590 TTAGAACAATGCCCGCCAGT 59.962 50.000 0.00 0.00 0.00 4.00
7653 8467 0.037590 TAGAACAATGCCCGCCAGTT 59.962 50.000 0.00 0.00 0.00 3.16
7654 8468 1.080569 GAACAATGCCCGCCAGTTG 60.081 57.895 0.00 0.00 0.00 3.16
7655 8469 3.225069 AACAATGCCCGCCAGTTGC 62.225 57.895 0.00 0.00 0.00 4.17
7656 8470 3.682885 CAATGCCCGCCAGTTGCA 61.683 61.111 0.00 0.00 41.33 4.08
7657 8471 2.916703 AATGCCCGCCAGTTGCAA 60.917 55.556 0.00 0.00 41.33 4.08
7658 8472 2.285024 AATGCCCGCCAGTTGCAAT 61.285 52.632 0.59 0.00 41.33 3.56
7659 8473 2.510064 AATGCCCGCCAGTTGCAATG 62.510 55.000 0.59 2.07 41.33 2.82
7660 8474 4.440127 GCCCGCCAGTTGCAATGG 62.440 66.667 18.26 18.26 41.33 3.16
7696 8510 8.679288 TTCTACTACGTTAGCTTGTGATTTAC 57.321 34.615 0.00 0.00 0.00 2.01
7697 8511 7.819644 TCTACTACGTTAGCTTGTGATTTACA 58.180 34.615 0.00 0.00 37.56 2.41
7698 8512 8.464404 TCTACTACGTTAGCTTGTGATTTACAT 58.536 33.333 0.00 0.00 39.48 2.29
7699 8513 7.290857 ACTACGTTAGCTTGTGATTTACATG 57.709 36.000 0.00 0.00 39.48 3.21
7700 8514 6.872020 ACTACGTTAGCTTGTGATTTACATGT 59.128 34.615 2.69 2.69 39.48 3.21
7701 8515 6.554334 ACGTTAGCTTGTGATTTACATGTT 57.446 33.333 2.30 0.00 39.48 2.71
7702 8516 7.661127 ACGTTAGCTTGTGATTTACATGTTA 57.339 32.000 2.30 0.00 39.48 2.41
7703 8517 8.090250 ACGTTAGCTTGTGATTTACATGTTAA 57.910 30.769 2.30 0.38 39.48 2.01
7704 8518 8.726988 ACGTTAGCTTGTGATTTACATGTTAAT 58.273 29.630 9.73 9.73 40.01 1.40
7751 8565 9.911788 AAATGTATCAATCTGACTGAATTACCT 57.088 29.630 0.00 0.00 0.00 3.08
7752 8566 9.911788 AATGTATCAATCTGACTGAATTACCTT 57.088 29.630 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.459489 GCTGCTCTCCCAGTGTCTAG 59.541 60.000 0.00 0.00 35.28 2.43
57 58 0.594796 GTTGTTTGACCAGCTTGCCG 60.595 55.000 0.00 0.00 0.00 5.69
66 67 0.030235 GGGCACGAAGTTGTTTGACC 59.970 55.000 0.00 0.00 41.61 4.02
100 101 0.305313 TCGCGTTTGAAAAACGAGGG 59.695 50.000 24.73 14.34 45.64 4.30
103 104 0.316360 GGCTCGCGTTTGAAAAACGA 60.316 50.000 24.73 12.70 45.64 3.85
105 106 1.254313 GTTGGCTCGCGTTTGAAAAAC 59.746 47.619 5.77 0.00 0.00 2.43
107 108 0.248702 GGTTGGCTCGCGTTTGAAAA 60.249 50.000 5.77 0.00 0.00 2.29
118 120 0.463474 GGATCTGCTCTGGTTGGCTC 60.463 60.000 0.00 0.00 0.00 4.70
175 182 0.252696 TATCCTGCTGGTGGTCTGGT 60.253 55.000 9.73 0.00 34.23 4.00
176 183 0.179000 GTATCCTGCTGGTGGTCTGG 59.821 60.000 9.73 0.00 34.23 3.86
177 184 1.137872 GAGTATCCTGCTGGTGGTCTG 59.862 57.143 9.73 0.00 34.23 3.51
178 185 1.490574 GAGTATCCTGCTGGTGGTCT 58.509 55.000 9.73 4.61 34.23 3.85
202 209 1.297689 GGGTAGACGTGGGGGTTTC 59.702 63.158 0.00 0.00 0.00 2.78
241 248 1.094785 CTGGCTTATCCCGTTGTTGG 58.905 55.000 0.00 0.00 0.00 3.77
244 256 1.077716 GGCTGGCTTATCCCGTTGT 60.078 57.895 0.00 0.00 0.00 3.32
303 332 2.180204 GTTGCCATCCATCGGTCCG 61.180 63.158 4.39 4.39 0.00 4.79
377 406 0.941542 TTTATTATCTGCGCCGGTGC 59.058 50.000 32.83 32.83 0.00 5.01
402 432 9.314321 TGTGCGGAAAAAGAACATTTTTATTTA 57.686 25.926 0.00 0.00 32.85 1.40
404 434 7.515998 CGTGTGCGGAAAAAGAACATTTTTATT 60.516 33.333 0.00 0.00 32.85 1.40
405 435 6.074569 CGTGTGCGGAAAAAGAACATTTTTAT 60.075 34.615 0.00 0.00 32.85 1.40
510 540 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
511 541 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
524 554 0.998945 CCCTCTCTCCCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
531 561 0.996762 TCCTCTCCCCTCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
532 562 0.998945 CTCCTCTCCCCTCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
539 569 2.543037 GGGATATCTCCTCTCCCCTC 57.457 60.000 2.05 0.00 42.48 4.30
543 573 2.304470 GGCAAAGGGATATCTCCTCTCC 59.696 54.545 11.75 9.77 41.74 3.71
544 574 2.975489 TGGCAAAGGGATATCTCCTCTC 59.025 50.000 11.75 5.86 41.74 3.20
545 575 3.066208 TGGCAAAGGGATATCTCCTCT 57.934 47.619 11.75 0.00 41.74 3.69
546 576 5.707066 ATATGGCAAAGGGATATCTCCTC 57.293 43.478 11.75 2.83 41.74 3.71
559 589 0.820871 GCAACGGGGAATATGGCAAA 59.179 50.000 0.00 0.00 0.00 3.68
716 747 2.044806 AATCCATCCCCTCCGCTTCG 62.045 60.000 0.00 0.00 0.00 3.79
717 748 0.536006 CAATCCATCCCCTCCGCTTC 60.536 60.000 0.00 0.00 0.00 3.86
718 749 0.988145 TCAATCCATCCCCTCCGCTT 60.988 55.000 0.00 0.00 0.00 4.68
719 750 0.769776 ATCAATCCATCCCCTCCGCT 60.770 55.000 0.00 0.00 0.00 5.52
720 751 0.111253 AATCAATCCATCCCCTCCGC 59.889 55.000 0.00 0.00 0.00 5.54
722 753 3.760738 GAGAAATCAATCCATCCCCTCC 58.239 50.000 0.00 0.00 0.00 4.30
723 754 3.406764 CGAGAAATCAATCCATCCCCTC 58.593 50.000 0.00 0.00 0.00 4.30
724 755 2.107204 CCGAGAAATCAATCCATCCCCT 59.893 50.000 0.00 0.00 0.00 4.79
725 756 2.508526 CCGAGAAATCAATCCATCCCC 58.491 52.381 0.00 0.00 0.00 4.81
728 759 7.693969 ATAAATCCCGAGAAATCAATCCATC 57.306 36.000 0.00 0.00 0.00 3.51
729 760 8.482852 AAATAAATCCCGAGAAATCAATCCAT 57.517 30.769 0.00 0.00 0.00 3.41
730 761 7.896383 AAATAAATCCCGAGAAATCAATCCA 57.104 32.000 0.00 0.00 0.00 3.41
795 826 2.241176 TCTCCTCTCTTGGTCTCTCTCC 59.759 54.545 0.00 0.00 0.00 3.71
834 876 0.105709 CTCCTCCTCCTCCTCTTCCC 60.106 65.000 0.00 0.00 0.00 3.97
835 877 0.105709 CCTCCTCCTCCTCCTCTTCC 60.106 65.000 0.00 0.00 0.00 3.46
836 878 0.930726 TCCTCCTCCTCCTCCTCTTC 59.069 60.000 0.00 0.00 0.00 2.87
837 879 0.933700 CTCCTCCTCCTCCTCCTCTT 59.066 60.000 0.00 0.00 0.00 2.85
838 880 0.254107 ACTCCTCCTCCTCCTCCTCT 60.254 60.000 0.00 0.00 0.00 3.69
839 881 0.634465 AACTCCTCCTCCTCCTCCTC 59.366 60.000 0.00 0.00 0.00 3.71
840 882 0.338120 CAACTCCTCCTCCTCCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
841 883 0.041982 ACAACTCCTCCTCCTCCTCC 59.958 60.000 0.00 0.00 0.00 4.30
842 884 1.552792 CAACAACTCCTCCTCCTCCTC 59.447 57.143 0.00 0.00 0.00 3.71
843 885 1.650528 CAACAACTCCTCCTCCTCCT 58.349 55.000 0.00 0.00 0.00 3.69
873 934 4.308458 CCACGCAGACCGGAACCA 62.308 66.667 9.46 0.00 42.52 3.67
874 935 2.798148 ATTCCACGCAGACCGGAACC 62.798 60.000 9.46 0.00 41.45 3.62
875 936 1.359459 GATTCCACGCAGACCGGAAC 61.359 60.000 9.46 0.99 41.45 3.62
876 937 1.079405 GATTCCACGCAGACCGGAA 60.079 57.895 9.46 0.00 42.77 4.30
877 938 2.577059 GATTCCACGCAGACCGGA 59.423 61.111 9.46 0.00 42.52 5.14
878 939 2.885644 CGATTCCACGCAGACCGG 60.886 66.667 0.00 0.00 42.52 5.28
887 954 2.107141 CTCCTCCGGCGATTCCAC 59.893 66.667 9.30 0.00 34.01 4.02
914 981 4.144727 ATCTCCCTCCTCCGCCGT 62.145 66.667 0.00 0.00 0.00 5.68
921 999 0.184933 CTCTCGACCATCTCCCTCCT 59.815 60.000 0.00 0.00 0.00 3.69
1391 1769 7.652105 CAGAAGTAACACTAGTAGCAAGTTCAA 59.348 37.037 0.00 0.00 0.00 2.69
1392 1770 7.145985 CAGAAGTAACACTAGTAGCAAGTTCA 58.854 38.462 0.00 0.00 0.00 3.18
1393 1771 6.089685 GCAGAAGTAACACTAGTAGCAAGTTC 59.910 42.308 0.00 1.08 0.00 3.01
1529 1907 1.818674 GACTTGGTTAGTTGGCCATGG 59.181 52.381 6.09 7.63 37.17 3.66
1530 1908 1.468520 CGACTTGGTTAGTTGGCCATG 59.531 52.381 6.09 0.00 37.17 3.66
1554 1932 3.750371 ACTTCATTGATGGTCAACCGAA 58.250 40.909 4.75 1.42 39.45 4.30
1557 1935 5.010012 ACTTCAACTTCATTGATGGTCAACC 59.990 40.000 4.75 0.00 46.80 3.77
1675 2056 3.191162 CACCAAACTGTCCACCATGTATG 59.809 47.826 0.00 0.00 0.00 2.39
1677 2058 2.439880 TCACCAAACTGTCCACCATGTA 59.560 45.455 0.00 0.00 0.00 2.29
1679 2060 1.979855 TCACCAAACTGTCCACCATG 58.020 50.000 0.00 0.00 0.00 3.66
1680 2061 2.746279 TTCACCAAACTGTCCACCAT 57.254 45.000 0.00 0.00 0.00 3.55
1693 2075 8.782144 GCAAAAATAGGAAATTTGAATTCACCA 58.218 29.630 7.89 0.00 36.41 4.17
1830 2212 2.269940 ACAAGATACCCCTGTTGAGCT 58.730 47.619 0.00 0.00 0.00 4.09
1932 2317 5.484173 TTGCAAAGATATAAGGAAGCACG 57.516 39.130 0.00 0.00 0.00 5.34
1967 2352 8.032451 TCACATATGAAACGTCAAGACTGAATA 58.968 33.333 10.38 0.00 37.30 1.75
2032 2417 2.095567 ACATGCTTGAAAGATGACGCAC 60.096 45.455 6.60 0.00 0.00 5.34
2034 2419 2.907910 ACATGCTTGAAAGATGACGC 57.092 45.000 6.60 0.00 0.00 5.19
2066 2451 3.678548 GCACTTGAAACCCGTTAGAGTAG 59.321 47.826 0.00 0.00 0.00 2.57
2069 2454 2.767505 AGCACTTGAAACCCGTTAGAG 58.232 47.619 0.00 0.00 0.00 2.43
2174 2559 7.125792 TCCTTCAGTTTCTTCAGAGTAAAGT 57.874 36.000 0.00 0.00 0.00 2.66
2316 2701 3.561313 GGGGTAGAAATGCAGTTTCCAGA 60.561 47.826 0.00 0.00 45.96 3.86
2330 2715 2.841215 CGAACAACTGTTGGGGTAGAA 58.159 47.619 23.15 0.00 38.56 2.10
2378 2763 3.513912 ACCGGAATCTGAGAACATGTACA 59.486 43.478 9.46 0.00 0.00 2.90
2399 2784 6.861572 TGCAACGAACTATATATACAGCAGAC 59.138 38.462 0.00 0.00 0.00 3.51
2456 2841 9.529325 AAATAAGAAAACCAAGAACTTACTTGC 57.471 29.630 0.00 0.00 43.83 4.01
2552 2948 4.080695 AGCATCAAAGCAGTAGATCTGGAA 60.081 41.667 5.18 0.00 43.78 3.53
2553 2949 3.453717 AGCATCAAAGCAGTAGATCTGGA 59.546 43.478 5.18 0.00 43.78 3.86
2632 3028 2.225242 TGGACCATACCCAATGTTTGCT 60.225 45.455 0.00 0.00 33.34 3.91
2890 3286 3.549794 AGAATTAGAACCATCAGGCAGC 58.450 45.455 0.00 0.00 39.06 5.25
2971 3367 0.250684 TTCCCGCATTGTCAGCTTCA 60.251 50.000 0.00 0.00 0.00 3.02
3107 3508 5.415701 TCCTTGATGATAACCTGCAAAAGTC 59.584 40.000 0.00 0.00 0.00 3.01
3198 3599 3.010138 CCAAAAGGGTTCCACTAGGATCA 59.990 47.826 0.00 0.00 45.26 2.92
3430 3838 4.392138 GTCCTGTATGACCTGCAAGTAAAC 59.608 45.833 0.00 0.00 0.00 2.01
3591 3999 0.994247 ATGGCCTTGACTGACATGGA 59.006 50.000 14.37 0.00 43.75 3.41
3987 4395 0.957395 ATTGAACTGGCTCAGCGGTG 60.957 55.000 8.67 8.67 34.37 4.94
4396 4804 3.430453 TCTCAATTTCCCCACCATGAAC 58.570 45.455 0.00 0.00 0.00 3.18
4565 4982 5.809562 CCAGCAACTAACAGAGATAGAACAG 59.190 44.000 0.00 0.00 0.00 3.16
4622 5073 7.470192 ACCCCTTGATATCATTAAATAGTGGG 58.530 38.462 6.17 13.42 0.00 4.61
4715 5177 5.554324 GCAATACAAAACAAAACAGAGCACG 60.554 40.000 0.00 0.00 0.00 5.34
4806 5268 6.514870 GCTCAGACTATAGATCAAGACACTGG 60.515 46.154 6.78 0.00 0.00 4.00
4950 5424 7.994425 TTACAGAAGCATATGACCTTTTCAA 57.006 32.000 6.97 0.00 37.92 2.69
4959 5433 4.842574 TGGCAGTTTACAGAAGCATATGA 58.157 39.130 6.97 0.00 0.00 2.15
4993 5467 5.410746 CAGTGACAGAATAGTGTGATTGCTT 59.589 40.000 0.00 0.00 0.00 3.91
5017 5491 8.007405 ACATTACAGGTTATCTAATTTTGGGC 57.993 34.615 0.00 0.00 0.00 5.36
5086 5564 3.516615 GCTAGACAAGCCAGTTAGACAG 58.483 50.000 0.00 0.00 46.25 3.51
5096 5574 7.116452 CCATTAAAATGTGTGCTAGACAAGCC 61.116 42.308 0.00 0.00 41.55 4.35
5097 5575 5.801947 CCATTAAAATGTGTGCTAGACAAGC 59.198 40.000 0.00 0.00 42.10 4.01
5211 5689 2.536066 AGTTACAGGGGCCCAAAATTC 58.464 47.619 27.72 9.62 0.00 2.17
5220 5698 7.732996 TGATTTAGTAGATTAGTTACAGGGGC 58.267 38.462 0.00 0.00 0.00 5.80
5332 5915 8.348507 AGAGTTTTGCAAGAGAGTAATTCAAAG 58.651 33.333 0.00 0.00 0.00 2.77
5352 5935 5.117406 ACAAGAGGGAAGACAAAGAGTTT 57.883 39.130 0.00 0.00 0.00 2.66
5353 5936 4.779993 ACAAGAGGGAAGACAAAGAGTT 57.220 40.909 0.00 0.00 0.00 3.01
5450 6060 6.015688 AGGTCTACTAAGTTCATCAACGACAA 60.016 38.462 0.00 0.00 37.61 3.18
5539 6151 4.672542 GCATGACACGTTCATATGCAAACT 60.673 41.667 15.07 0.00 43.68 2.66
5553 6165 2.383298 AAAACGACAAGCATGACACG 57.617 45.000 0.00 1.37 0.00 4.49
5566 6178 2.871096 ACCTATGCCCTGAAAAACGA 57.129 45.000 0.00 0.00 0.00 3.85
5609 6280 4.470334 ACTCAAAAGTTGCATTGGTTGT 57.530 36.364 0.00 0.00 28.74 3.32
5682 6353 5.163237 GCCCTGTTTATCTCCATGGTACTTA 60.163 44.000 12.58 0.00 0.00 2.24
5685 6356 3.118038 TGCCCTGTTTATCTCCATGGTAC 60.118 47.826 12.58 2.71 0.00 3.34
5735 6406 6.073385 GGTTTGACTACTTAGCACCAAGTAAC 60.073 42.308 6.93 4.48 39.79 2.50
5823 6544 1.000385 TGAAATTGTCGGCTTGCAAGG 60.000 47.619 27.10 12.18 0.00 3.61
5835 6556 5.284079 GCGGATAATGCATTCTGAAATTGT 58.716 37.500 16.86 0.00 0.00 2.71
5862 6583 3.366985 CCGAGCTATACTGTGTGTTGTCA 60.367 47.826 0.00 0.00 0.00 3.58
6113 6839 5.371526 TCAGGAGATCCAATAGAATTGCAC 58.628 41.667 0.92 0.00 38.89 4.57
6203 6929 2.006805 TGGTGGATGCATTTGTTCCA 57.993 45.000 0.00 0.14 37.20 3.53
6238 6964 3.911260 TGGTAAACAATCCACACCCTCTA 59.089 43.478 0.00 0.00 0.00 2.43
6263 6989 2.816087 GTTGCTCAATGGTCTGATGTGT 59.184 45.455 0.00 0.00 0.00 3.72
6739 7466 2.024414 AGTTCAACCTGCCACAAAGAC 58.976 47.619 0.00 0.00 0.00 3.01
6807 7535 8.382030 TCTACATAATATTGCACACTGAATGG 57.618 34.615 0.00 0.00 0.00 3.16
6919 7647 2.992543 GCAAATAAACATGGAGCGCAAA 59.007 40.909 11.47 0.00 0.00 3.68
7246 7975 5.965334 CAGTTATGTCACATTAATCGTTGCC 59.035 40.000 0.00 0.00 0.00 4.52
7309 8038 5.486526 ACAGAAAGGAAGAGCAGAACATAG 58.513 41.667 0.00 0.00 0.00 2.23
7316 8045 3.065655 CACAGACAGAAAGGAAGAGCAG 58.934 50.000 0.00 0.00 0.00 4.24
7317 8046 2.435805 ACACAGACAGAAAGGAAGAGCA 59.564 45.455 0.00 0.00 0.00 4.26
7318 8047 3.118905 ACACAGACAGAAAGGAAGAGC 57.881 47.619 0.00 0.00 0.00 4.09
7329 8058 1.197036 CTGAGCATGCAACACAGACAG 59.803 52.381 21.98 11.13 0.00 3.51
7333 8062 4.083164 TCAATTACTGAGCATGCAACACAG 60.083 41.667 21.98 22.41 35.14 3.66
7364 8093 6.543465 CCAGAAGCCACTTGTAATTCATCATA 59.457 38.462 0.00 0.00 0.00 2.15
7393 8122 8.579850 AAAATGCTGTGACTAATTATCTTCCA 57.420 30.769 0.00 0.00 0.00 3.53
7394 8123 8.897752 AGAAAATGCTGTGACTAATTATCTTCC 58.102 33.333 0.00 0.00 0.00 3.46
7414 8228 4.759693 TGTCCTTGCGAACATACAGAAAAT 59.240 37.500 0.00 0.00 0.00 1.82
7433 8247 3.998341 TGTAATTTCCGTAGCAAGTGTCC 59.002 43.478 0.00 0.00 0.00 4.02
7444 8258 3.426787 TCCCACACATGTAATTTCCGT 57.573 42.857 0.00 0.00 0.00 4.69
7474 8288 4.278170 CCAAATTCACACCAGACTTGCTAA 59.722 41.667 0.00 0.00 0.00 3.09
7476 8290 2.624838 CCAAATTCACACCAGACTTGCT 59.375 45.455 0.00 0.00 0.00 3.91
7477 8291 2.288395 CCCAAATTCACACCAGACTTGC 60.288 50.000 0.00 0.00 0.00 4.01
7478 8292 2.297033 CCCCAAATTCACACCAGACTTG 59.703 50.000 0.00 0.00 0.00 3.16
7479 8293 2.597455 CCCCAAATTCACACCAGACTT 58.403 47.619 0.00 0.00 0.00 3.01
7480 8294 1.823250 GCCCCAAATTCACACCAGACT 60.823 52.381 0.00 0.00 0.00 3.24
7481 8295 0.603065 GCCCCAAATTCACACCAGAC 59.397 55.000 0.00 0.00 0.00 3.51
7482 8296 0.187117 TGCCCCAAATTCACACCAGA 59.813 50.000 0.00 0.00 0.00 3.86
7483 8297 0.604578 CTGCCCCAAATTCACACCAG 59.395 55.000 0.00 0.00 0.00 4.00
7484 8298 0.831288 CCTGCCCCAAATTCACACCA 60.831 55.000 0.00 0.00 0.00 4.17
7485 8299 1.974543 CCTGCCCCAAATTCACACC 59.025 57.895 0.00 0.00 0.00 4.16
7486 8300 1.187567 AGCCTGCCCCAAATTCACAC 61.188 55.000 0.00 0.00 0.00 3.82
7487 8301 0.471591 AAGCCTGCCCCAAATTCACA 60.472 50.000 0.00 0.00 0.00 3.58
7488 8302 0.686789 AAAGCCTGCCCCAAATTCAC 59.313 50.000 0.00 0.00 0.00 3.18
7489 8303 0.975887 GAAAGCCTGCCCCAAATTCA 59.024 50.000 0.00 0.00 0.00 2.57
7490 8304 0.975887 TGAAAGCCTGCCCCAAATTC 59.024 50.000 0.00 0.00 0.00 2.17
7491 8305 0.978907 CTGAAAGCCTGCCCCAAATT 59.021 50.000 0.00 0.00 0.00 1.82
7492 8306 0.906282 CCTGAAAGCCTGCCCCAAAT 60.906 55.000 0.00 0.00 0.00 2.32
7493 8307 1.533753 CCTGAAAGCCTGCCCCAAA 60.534 57.895 0.00 0.00 0.00 3.28
7494 8308 2.118076 CCTGAAAGCCTGCCCCAA 59.882 61.111 0.00 0.00 0.00 4.12
7495 8309 3.983420 CCCTGAAAGCCTGCCCCA 61.983 66.667 0.00 0.00 0.00 4.96
7496 8310 1.937924 ATACCCTGAAAGCCTGCCCC 61.938 60.000 0.00 0.00 0.00 5.80
7497 8311 0.843984 TATACCCTGAAAGCCTGCCC 59.156 55.000 0.00 0.00 0.00 5.36
7498 8312 2.959465 ATATACCCTGAAAGCCTGCC 57.041 50.000 0.00 0.00 0.00 4.85
7499 8313 3.149981 GGAATATACCCTGAAAGCCTGC 58.850 50.000 0.00 0.00 0.00 4.85
7500 8314 3.756117 GGGAATATACCCTGAAAGCCTG 58.244 50.000 0.00 0.00 45.90 4.85
7518 8332 2.073716 AAGGTGGTTCCACGTGGGA 61.074 57.895 33.40 24.77 46.61 4.37
7519 8333 1.896660 CAAGGTGGTTCCACGTGGG 60.897 63.158 33.40 15.70 37.79 4.61
7520 8334 0.750182 AACAAGGTGGTTCCACGTGG 60.750 55.000 29.26 29.26 37.79 4.94
7521 8335 0.661020 GAACAAGGTGGTTCCACGTG 59.339 55.000 16.19 9.08 40.97 4.49
7522 8336 3.089788 GAACAAGGTGGTTCCACGT 57.910 52.632 14.63 12.74 40.97 4.49
7527 8341 2.018515 TGAAACGGAACAAGGTGGTTC 58.981 47.619 0.00 0.00 45.01 3.62
7528 8342 1.746787 GTGAAACGGAACAAGGTGGTT 59.253 47.619 0.00 0.00 0.00 3.67
7529 8343 1.064979 AGTGAAACGGAACAAGGTGGT 60.065 47.619 0.00 0.00 45.86 4.16
7530 8344 1.602377 GAGTGAAACGGAACAAGGTGG 59.398 52.381 0.00 0.00 45.86 4.61
7531 8345 2.031683 GTGAGTGAAACGGAACAAGGTG 59.968 50.000 0.00 0.00 45.86 4.00
7532 8346 2.093128 AGTGAGTGAAACGGAACAAGGT 60.093 45.455 0.00 0.00 45.86 3.50
7533 8347 2.544267 GAGTGAGTGAAACGGAACAAGG 59.456 50.000 0.00 0.00 45.86 3.61
7534 8348 3.458189 AGAGTGAGTGAAACGGAACAAG 58.542 45.455 0.00 0.00 45.86 3.16
7535 8349 3.536956 AGAGTGAGTGAAACGGAACAA 57.463 42.857 0.00 0.00 45.86 2.83
7536 8350 3.454375 GAAGAGTGAGTGAAACGGAACA 58.546 45.455 0.00 0.00 45.86 3.18
7537 8351 2.801111 GGAAGAGTGAGTGAAACGGAAC 59.199 50.000 0.00 0.00 45.86 3.62
7538 8352 2.224209 GGGAAGAGTGAGTGAAACGGAA 60.224 50.000 0.00 0.00 45.86 4.30
7539 8353 1.343465 GGGAAGAGTGAGTGAAACGGA 59.657 52.381 0.00 0.00 45.86 4.69
7540 8354 1.797025 GGGAAGAGTGAGTGAAACGG 58.203 55.000 0.00 0.00 45.86 4.44
7541 8355 1.000607 TCGGGAAGAGTGAGTGAAACG 60.001 52.381 0.00 0.00 45.86 3.60
7542 8356 2.814280 TCGGGAAGAGTGAGTGAAAC 57.186 50.000 0.00 0.00 0.00 2.78
7543 8357 5.661458 GATTATCGGGAAGAGTGAGTGAAA 58.339 41.667 0.00 0.00 0.00 2.69
7544 8358 4.202020 CGATTATCGGGAAGAGTGAGTGAA 60.202 45.833 6.73 0.00 36.00 3.18
7545 8359 3.315470 CGATTATCGGGAAGAGTGAGTGA 59.685 47.826 6.73 0.00 36.00 3.41
7546 8360 3.633235 CGATTATCGGGAAGAGTGAGTG 58.367 50.000 6.73 0.00 36.00 3.51
7547 8361 3.992260 CGATTATCGGGAAGAGTGAGT 57.008 47.619 6.73 0.00 36.00 3.41
7559 8373 1.219522 GGCCCGACAACCGATTATCG 61.220 60.000 7.74 7.74 41.76 2.92
7560 8374 0.106149 AGGCCCGACAACCGATTATC 59.894 55.000 0.00 0.00 41.76 1.75
7561 8375 0.106149 GAGGCCCGACAACCGATTAT 59.894 55.000 0.00 0.00 41.76 1.28
7562 8376 0.974010 AGAGGCCCGACAACCGATTA 60.974 55.000 0.00 0.00 41.76 1.75
7563 8377 1.838073 AAGAGGCCCGACAACCGATT 61.838 55.000 0.00 0.00 41.76 3.34
7564 8378 1.838073 AAAGAGGCCCGACAACCGAT 61.838 55.000 0.00 0.00 41.76 4.18
7565 8379 2.047213 AAAAGAGGCCCGACAACCGA 62.047 55.000 0.00 0.00 41.76 4.69
7566 8380 0.320946 TAAAAGAGGCCCGACAACCG 60.321 55.000 0.00 0.00 38.18 4.44
7567 8381 1.900245 TTAAAAGAGGCCCGACAACC 58.100 50.000 0.00 0.00 0.00 3.77
7568 8382 5.632244 TTTATTAAAAGAGGCCCGACAAC 57.368 39.130 0.00 0.00 0.00 3.32
7569 8383 6.844097 AATTTATTAAAAGAGGCCCGACAA 57.156 33.333 0.00 0.00 0.00 3.18
7570 8384 7.114095 AGTAATTTATTAAAAGAGGCCCGACA 58.886 34.615 0.00 0.00 0.00 4.35
7571 8385 7.498239 AGAGTAATTTATTAAAAGAGGCCCGAC 59.502 37.037 0.00 0.00 0.00 4.79
7572 8386 7.571025 AGAGTAATTTATTAAAAGAGGCCCGA 58.429 34.615 0.00 0.00 0.00 5.14
7573 8387 7.803279 AGAGTAATTTATTAAAAGAGGCCCG 57.197 36.000 0.00 0.00 0.00 6.13
7574 8388 8.630917 GGAAGAGTAATTTATTAAAAGAGGCCC 58.369 37.037 0.00 0.00 0.00 5.80
7575 8389 8.630917 GGGAAGAGTAATTTATTAAAAGAGGCC 58.369 37.037 0.00 0.00 0.00 5.19
7576 8390 8.343366 CGGGAAGAGTAATTTATTAAAAGAGGC 58.657 37.037 0.00 0.00 0.00 4.70
7577 8391 9.609346 TCGGGAAGAGTAATTTATTAAAAGAGG 57.391 33.333 0.00 0.00 0.00 3.69
7601 8415 1.219522 GGCCCGACAACCGATTATCG 61.220 60.000 7.74 7.74 41.76 2.92
7602 8416 0.106149 AGGCCCGACAACCGATTATC 59.894 55.000 0.00 0.00 41.76 1.75
7603 8417 0.106149 GAGGCCCGACAACCGATTAT 59.894 55.000 0.00 0.00 41.76 1.28
7604 8418 0.974010 AGAGGCCCGACAACCGATTA 60.974 55.000 0.00 0.00 41.76 1.75
7605 8419 1.838073 AAGAGGCCCGACAACCGATT 61.838 55.000 0.00 0.00 41.76 3.34
7606 8420 1.838073 AAAGAGGCCCGACAACCGAT 61.838 55.000 0.00 0.00 41.76 4.18
7607 8421 2.444700 GAAAGAGGCCCGACAACCGA 62.445 60.000 0.00 0.00 41.76 4.69
7608 8422 2.032071 AAAGAGGCCCGACAACCG 59.968 61.111 0.00 0.00 38.18 4.44
7609 8423 0.536460 TTGAAAGAGGCCCGACAACC 60.536 55.000 0.00 0.00 0.00 3.77
7610 8424 1.534729 ATTGAAAGAGGCCCGACAAC 58.465 50.000 0.00 0.00 0.00 3.32
7611 8425 3.426787 TTATTGAAAGAGGCCCGACAA 57.573 42.857 0.00 0.00 0.00 3.18
7612 8426 3.426787 TTTATTGAAAGAGGCCCGACA 57.573 42.857 0.00 0.00 0.00 4.35
7613 8427 4.983671 AATTTATTGAAAGAGGCCCGAC 57.016 40.909 0.00 0.00 0.00 4.79
7614 8428 5.996644 TCTAATTTATTGAAAGAGGCCCGA 58.003 37.500 0.00 0.00 0.00 5.14
7615 8429 6.094881 TGTTCTAATTTATTGAAAGAGGCCCG 59.905 38.462 0.00 0.00 0.00 6.13
7616 8430 7.404671 TGTTCTAATTTATTGAAAGAGGCCC 57.595 36.000 0.00 0.00 0.00 5.80
7617 8431 9.305925 CATTGTTCTAATTTATTGAAAGAGGCC 57.694 33.333 0.00 0.00 0.00 5.19
7618 8432 8.811378 GCATTGTTCTAATTTATTGAAAGAGGC 58.189 33.333 0.00 0.00 0.00 4.70
7619 8433 9.305925 GGCATTGTTCTAATTTATTGAAAGAGG 57.694 33.333 0.00 0.00 0.00 3.69
7620 8434 9.305925 GGGCATTGTTCTAATTTATTGAAAGAG 57.694 33.333 0.00 0.00 0.00 2.85
7621 8435 7.973388 CGGGCATTGTTCTAATTTATTGAAAGA 59.027 33.333 0.00 0.00 0.00 2.52
7622 8436 7.254084 GCGGGCATTGTTCTAATTTATTGAAAG 60.254 37.037 0.00 0.00 0.00 2.62
7623 8437 6.533367 GCGGGCATTGTTCTAATTTATTGAAA 59.467 34.615 0.00 0.00 0.00 2.69
7624 8438 6.039616 GCGGGCATTGTTCTAATTTATTGAA 58.960 36.000 0.00 0.00 0.00 2.69
7625 8439 5.451242 GGCGGGCATTGTTCTAATTTATTGA 60.451 40.000 0.00 0.00 0.00 2.57
7626 8440 4.744631 GGCGGGCATTGTTCTAATTTATTG 59.255 41.667 0.00 0.00 0.00 1.90
7627 8441 4.404073 TGGCGGGCATTGTTCTAATTTATT 59.596 37.500 0.00 0.00 0.00 1.40
7628 8442 3.957497 TGGCGGGCATTGTTCTAATTTAT 59.043 39.130 0.00 0.00 0.00 1.40
7629 8443 3.357203 TGGCGGGCATTGTTCTAATTTA 58.643 40.909 0.00 0.00 0.00 1.40
7630 8444 2.166254 CTGGCGGGCATTGTTCTAATTT 59.834 45.455 4.16 0.00 0.00 1.82
7631 8445 1.750778 CTGGCGGGCATTGTTCTAATT 59.249 47.619 4.16 0.00 0.00 1.40
7632 8446 1.340991 ACTGGCGGGCATTGTTCTAAT 60.341 47.619 4.16 0.00 0.00 1.73
7633 8447 0.037590 ACTGGCGGGCATTGTTCTAA 59.962 50.000 4.16 0.00 0.00 2.10
7634 8448 0.037590 AACTGGCGGGCATTGTTCTA 59.962 50.000 4.16 0.00 0.00 2.10
7635 8449 1.228552 AACTGGCGGGCATTGTTCT 60.229 52.632 4.16 0.00 0.00 3.01
7636 8450 1.080569 CAACTGGCGGGCATTGTTC 60.081 57.895 4.16 0.00 0.00 3.18
7637 8451 3.050339 CAACTGGCGGGCATTGTT 58.950 55.556 4.16 3.92 0.00 2.83
7638 8452 3.683937 GCAACTGGCGGGCATTGT 61.684 61.111 19.61 8.88 0.00 2.71
7670 8484 9.298774 GTAAATCACAAGCTAACGTAGTAGAAT 57.701 33.333 0.00 0.00 45.00 2.40
7671 8485 8.298854 TGTAAATCACAAGCTAACGTAGTAGAA 58.701 33.333 0.00 0.00 34.14 2.10
7672 8486 7.819644 TGTAAATCACAAGCTAACGTAGTAGA 58.180 34.615 0.00 0.00 34.14 2.59
7673 8487 8.532341 CATGTAAATCACAAGCTAACGTAGTAG 58.468 37.037 0.00 0.00 40.18 2.57
7674 8488 8.030692 ACATGTAAATCACAAGCTAACGTAGTA 58.969 33.333 0.00 0.00 40.18 1.82
7675 8489 6.872020 ACATGTAAATCACAAGCTAACGTAGT 59.128 34.615 0.00 0.00 42.52 2.73
7676 8490 7.290857 ACATGTAAATCACAAGCTAACGTAG 57.709 36.000 0.00 0.00 41.55 3.51
7677 8491 7.661127 AACATGTAAATCACAAGCTAACGTA 57.339 32.000 0.00 0.00 41.55 3.57
7678 8492 6.554334 AACATGTAAATCACAAGCTAACGT 57.446 33.333 0.00 0.00 41.55 3.99
7725 8539 9.911788 AGGTAATTCAGTCAGATTGATACATTT 57.088 29.630 8.27 0.00 0.00 2.32
7726 8540 9.911788 AAGGTAATTCAGTCAGATTGATACATT 57.088 29.630 8.27 5.41 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.