Multiple sequence alignment - TraesCS1A01G254100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G254100 chr1A 100.000 4395 0 0 1 4395 445657349 445652955 0.000000e+00 8117.0
1 TraesCS1A01G254100 chr1A 86.652 1371 147 25 2063 3417 445543098 445541748 0.000000e+00 1485.0
2 TraesCS1A01G254100 chr1A 90.254 944 88 4 2478 3417 445547915 445546972 0.000000e+00 1230.0
3 TraesCS1A01G254100 chr1A 79.146 1218 190 46 1684 2860 445535760 445534566 0.000000e+00 784.0
4 TraesCS1A01G254100 chr1A 86.102 590 78 4 963 1549 445544608 445544020 2.230000e-177 632.0
5 TraesCS1A01G254100 chr1A 88.046 527 55 6 2895 3417 445534568 445534046 6.250000e-173 617.0
6 TraesCS1A01G254100 chr1A 86.444 568 69 5 980 1546 445549569 445549009 2.250000e-172 616.0
7 TraesCS1A01G254100 chr1A 84.014 563 58 16 1836 2391 445548660 445548123 3.030000e-141 512.0
8 TraesCS1A01G254100 chr1A 98.182 110 2 0 91 200 445657150 445657041 4.490000e-45 193.0
9 TraesCS1A01G254100 chr1A 98.182 110 2 0 200 309 445657259 445657150 4.490000e-45 193.0
10 TraesCS1A01G254100 chr1B 94.246 3441 157 24 926 4345 465096970 465100390 0.000000e+00 5219.0
11 TraesCS1A01G254100 chr1B 86.105 1756 181 38 1684 3414 465240249 465241966 0.000000e+00 1832.0
12 TraesCS1A01G254100 chr1B 86.107 1418 161 30 2018 3417 465244813 465246212 0.000000e+00 1495.0
13 TraesCS1A01G254100 chr1B 85.792 915 105 15 2488 3383 465362647 465363555 0.000000e+00 946.0
14 TraesCS1A01G254100 chr1B 86.806 811 98 8 3545 4348 27159296 27158488 0.000000e+00 896.0
15 TraesCS1A01G254100 chr1B 86.387 595 74 7 963 1552 465243241 465243833 1.030000e-180 643.0
16 TraesCS1A01G254100 chr1B 86.243 567 70 5 981 1546 465239493 465240052 3.760000e-170 608.0
17 TraesCS1A01G254100 chr1B 83.172 517 65 12 981 1496 465246727 465247222 1.860000e-123 453.0
18 TraesCS1A01G254100 chr1D 95.196 1478 62 5 900 2371 345481828 345480354 0.000000e+00 2327.0
19 TraesCS1A01G254100 chr1D 96.306 1110 36 3 2419 3525 345480355 345479248 0.000000e+00 1818.0
20 TraesCS1A01G254100 chr1D 85.694 1419 165 29 2018 3417 345432468 345431069 0.000000e+00 1461.0
21 TraesCS1A01G254100 chr1D 87.650 1247 128 17 2182 3417 345436584 345435353 0.000000e+00 1426.0
22 TraesCS1A01G254100 chr1D 83.659 1279 165 27 2258 3511 345416864 345415605 0.000000e+00 1164.0
23 TraesCS1A01G254100 chr1D 86.532 594 75 5 963 1552 345433738 345433146 0.000000e+00 649.0
24 TraesCS1A01G254100 chr1D 86.562 573 65 8 981 1552 345430537 345429976 4.830000e-174 621.0
25 TraesCS1A01G254100 chr1D 84.906 583 67 10 200 770 345484926 345484353 1.770000e-158 569.0
26 TraesCS1A01G254100 chr1D 100.000 35 0 0 3522 3556 345477661 345477627 1.020000e-06 65.8
27 TraesCS1A01G254100 chrUn 89.711 797 74 5 3552 4344 103279149 103278357 0.000000e+00 1011.0
28 TraesCS1A01G254100 chrUn 84.615 65 9 1 576 640 409548878 409548815 3.670000e-06 63.9
29 TraesCS1A01G254100 chr2A 89.460 797 77 7 3555 4348 750731026 750730234 0.000000e+00 1000.0
30 TraesCS1A01G254100 chr2A 81.429 140 22 2 364 499 63831345 63831484 1.290000e-20 111.0
31 TraesCS1A01G254100 chr2A 75.188 133 26 5 509 638 671279956 671280084 6.140000e-04 56.5
32 TraesCS1A01G254100 chr4D 89.070 796 75 8 3554 4348 101496848 101497632 0.000000e+00 977.0
33 TraesCS1A01G254100 chr4D 82.482 137 20 2 367 499 497641254 497641390 2.780000e-22 117.0
34 TraesCS1A01G254100 chr6B 87.990 791 89 6 3556 4343 714044815 714045602 0.000000e+00 929.0
35 TraesCS1A01G254100 chr4A 87.799 795 79 13 3554 4343 473775153 473774372 0.000000e+00 915.0
36 TraesCS1A01G254100 chr4A 77.519 129 28 1 510 638 723734214 723734341 4.710000e-10 76.8
37 TraesCS1A01G254100 chr4A 100.000 35 0 0 604 638 497016675 497016641 1.020000e-06 65.8
38 TraesCS1A01G254100 chr7D 87.626 792 89 7 3556 4345 37650374 37651158 0.000000e+00 911.0
39 TraesCS1A01G254100 chr7D 97.143 35 1 0 604 638 32227179 32227145 4.750000e-05 60.2
40 TraesCS1A01G254100 chr6A 86.033 852 103 9 3556 4395 340380247 340381094 0.000000e+00 900.0
41 TraesCS1A01G254100 chr4B 78.157 293 43 12 365 638 18429576 18429286 2.720000e-37 167.0
42 TraesCS1A01G254100 chr4B 82.979 141 18 4 364 499 667353258 667353397 5.970000e-24 122.0
43 TraesCS1A01G254100 chr7A 85.366 123 11 5 377 494 198801470 198801350 2.150000e-23 121.0
44 TraesCS1A01G254100 chr7A 84.848 99 15 0 497 595 660140422 660140520 2.800000e-17 100.0
45 TraesCS1A01G254100 chr3B 83.721 129 16 3 510 638 780693745 780693622 2.780000e-22 117.0
46 TraesCS1A01G254100 chr5A 83.333 132 15 5 365 491 482942180 482942051 9.990000e-22 115.0
47 TraesCS1A01G254100 chr5A 88.462 52 6 0 500 551 467756071 467756122 3.670000e-06 63.9
48 TraesCS1A01G254100 chr3D 82.836 134 16 5 367 495 7510398 7510529 3.590000e-21 113.0
49 TraesCS1A01G254100 chr5D 80.620 129 17 7 374 499 406352291 406352414 4.680000e-15 93.5
50 TraesCS1A01G254100 chr2B 89.091 55 6 0 755 809 456464534 456464588 7.890000e-08 69.4
51 TraesCS1A01G254100 chr5B 97.143 35 1 0 604 638 438023292 438023258 4.750000e-05 60.2
52 TraesCS1A01G254100 chr5B 100.000 29 0 0 604 632 491439383 491439411 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G254100 chr1A 445652955 445657349 4394 True 2834.333333 8117 98.7880 1 4395 3 chr1A.!!$R3 4394
1 TraesCS1A01G254100 chr1A 445541748 445549569 7821 True 895.000000 1485 86.6932 963 3417 5 chr1A.!!$R2 2454
2 TraesCS1A01G254100 chr1A 445534046 445535760 1714 True 700.500000 784 83.5960 1684 3417 2 chr1A.!!$R1 1733
3 TraesCS1A01G254100 chr1B 465096970 465100390 3420 False 5219.000000 5219 94.2460 926 4345 1 chr1B.!!$F1 3419
4 TraesCS1A01G254100 chr1B 465239493 465247222 7729 False 1006.200000 1832 85.6028 963 3417 5 chr1B.!!$F3 2454
5 TraesCS1A01G254100 chr1B 465362647 465363555 908 False 946.000000 946 85.7920 2488 3383 1 chr1B.!!$F2 895
6 TraesCS1A01G254100 chr1B 27158488 27159296 808 True 896.000000 896 86.8060 3545 4348 1 chr1B.!!$R1 803
7 TraesCS1A01G254100 chr1D 345477627 345484926 7299 True 1194.950000 2327 94.1020 200 3556 4 chr1D.!!$R3 3356
8 TraesCS1A01G254100 chr1D 345415605 345416864 1259 True 1164.000000 1164 83.6590 2258 3511 1 chr1D.!!$R1 1253
9 TraesCS1A01G254100 chr1D 345429976 345436584 6608 True 1039.250000 1461 86.6095 963 3417 4 chr1D.!!$R2 2454
10 TraesCS1A01G254100 chrUn 103278357 103279149 792 True 1011.000000 1011 89.7110 3552 4344 1 chrUn.!!$R1 792
11 TraesCS1A01G254100 chr2A 750730234 750731026 792 True 1000.000000 1000 89.4600 3555 4348 1 chr2A.!!$R1 793
12 TraesCS1A01G254100 chr4D 101496848 101497632 784 False 977.000000 977 89.0700 3554 4348 1 chr4D.!!$F1 794
13 TraesCS1A01G254100 chr6B 714044815 714045602 787 False 929.000000 929 87.9900 3556 4343 1 chr6B.!!$F1 787
14 TraesCS1A01G254100 chr4A 473774372 473775153 781 True 915.000000 915 87.7990 3554 4343 1 chr4A.!!$R1 789
15 TraesCS1A01G254100 chr7D 37650374 37651158 784 False 911.000000 911 87.6260 3556 4345 1 chr7D.!!$F1 789
16 TraesCS1A01G254100 chr6A 340380247 340381094 847 False 900.000000 900 86.0330 3556 4395 1 chr6A.!!$F1 839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.040058 TTGCCCCTGAGCACATCATT 59.960 50.0 0.00 0.0 43.97 2.57 F
166 167 0.107654 GCCAAGGCATCCGACTACTT 60.108 55.0 6.14 0.0 41.49 2.24 F
645 657 0.174845 TCGATTGTACTGGAAGGGCG 59.825 55.0 0.00 0.0 39.30 6.13 F
845 3283 0.530744 TCAGCACGGCTCGATTACTT 59.469 50.0 1.50 0.0 36.40 2.24 F
1299 3737 0.595567 CGTTCGTGTTCTGGTTCGGA 60.596 55.0 0.00 0.0 0.00 4.55 F
2594 9957 0.379669 CCCTGCGCAGATTGATTGAC 59.620 55.0 38.06 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1021 3459 0.890090 GCGAGTAGACCGGCTAGGAT 60.890 60.000 0.00 0.0 45.00 3.24 R
1635 4102 1.362717 CACCCTACGCCTGTATCGG 59.637 63.158 0.00 0.0 0.00 4.18 R
2564 9927 1.095228 TGCGCAGGGAATTTCGGATC 61.095 55.000 5.66 0.0 0.00 3.36 R
2594 9957 8.955061 AATCTTCACACTTGTTTCGATTTATG 57.045 30.769 0.00 0.0 0.00 1.90 R
3127 15732 2.289631 CGCATTAGCTCCCCATATGTCA 60.290 50.000 1.24 0.0 39.10 3.58 R
3775 18017 2.283966 ACAGAGGTGGACCCGGAG 60.284 66.667 0.73 0.0 38.74 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.789409 GTATGGGAGTGTCAAGGCTT 57.211 50.000 0.00 0.00 0.00 4.35
20 21 2.633488 GTATGGGAGTGTCAAGGCTTC 58.367 52.381 0.00 0.00 0.00 3.86
21 22 0.329596 ATGGGAGTGTCAAGGCTTCC 59.670 55.000 0.00 0.00 0.00 3.46
22 23 1.376037 GGGAGTGTCAAGGCTTCCG 60.376 63.158 0.00 0.00 0.00 4.30
23 24 2.035442 GGAGTGTCAAGGCTTCCGC 61.035 63.158 0.00 0.00 0.00 5.54
33 34 4.143333 GCTTCCGCCGCTAGGACA 62.143 66.667 0.00 0.00 41.02 4.02
34 35 2.202756 CTTCCGCCGCTAGGACAC 60.203 66.667 0.00 0.00 41.02 3.67
35 36 3.718210 CTTCCGCCGCTAGGACACC 62.718 68.421 0.00 0.00 41.02 4.16
36 37 4.753662 TCCGCCGCTAGGACACCT 62.754 66.667 0.00 0.00 41.02 4.00
37 38 4.514577 CCGCCGCTAGGACACCTG 62.515 72.222 0.00 0.00 41.02 4.00
41 42 4.435436 CGCTAGGACACCTGCGCA 62.435 66.667 10.98 10.98 41.28 6.09
42 43 2.815647 GCTAGGACACCTGCGCAC 60.816 66.667 5.66 0.00 34.61 5.34
43 44 2.125512 CTAGGACACCTGCGCACC 60.126 66.667 5.66 5.80 34.61 5.01
44 45 2.920384 TAGGACACCTGCGCACCA 60.920 61.111 5.66 0.00 34.61 4.17
45 46 2.842394 CTAGGACACCTGCGCACCAG 62.842 65.000 5.66 0.00 41.41 4.00
46 47 4.626081 GGACACCTGCGCACCAGT 62.626 66.667 5.66 4.49 40.06 4.00
47 48 3.044305 GACACCTGCGCACCAGTC 61.044 66.667 5.66 10.88 40.06 3.51
48 49 3.521529 GACACCTGCGCACCAGTCT 62.522 63.158 5.66 0.00 40.06 3.24
49 50 2.154798 GACACCTGCGCACCAGTCTA 62.155 60.000 5.66 0.00 40.06 2.59
50 51 1.219124 CACCTGCGCACCAGTCTAT 59.781 57.895 5.66 0.00 40.06 1.98
51 52 0.807667 CACCTGCGCACCAGTCTATC 60.808 60.000 5.66 0.00 40.06 2.08
52 53 0.972983 ACCTGCGCACCAGTCTATCT 60.973 55.000 5.66 0.00 40.06 1.98
53 54 0.176680 CCTGCGCACCAGTCTATCTT 59.823 55.000 5.66 0.00 40.06 2.40
54 55 1.565305 CTGCGCACCAGTCTATCTTC 58.435 55.000 5.66 0.00 36.79 2.87
55 56 0.175760 TGCGCACCAGTCTATCTTCC 59.824 55.000 5.66 0.00 0.00 3.46
56 57 0.461961 GCGCACCAGTCTATCTTCCT 59.538 55.000 0.30 0.00 0.00 3.36
57 58 1.681793 GCGCACCAGTCTATCTTCCTA 59.318 52.381 0.30 0.00 0.00 2.94
58 59 2.297597 GCGCACCAGTCTATCTTCCTAT 59.702 50.000 0.30 0.00 0.00 2.57
59 60 3.243907 GCGCACCAGTCTATCTTCCTATT 60.244 47.826 0.30 0.00 0.00 1.73
60 61 4.740934 GCGCACCAGTCTATCTTCCTATTT 60.741 45.833 0.30 0.00 0.00 1.40
61 62 4.985409 CGCACCAGTCTATCTTCCTATTTC 59.015 45.833 0.00 0.00 0.00 2.17
62 63 5.301555 GCACCAGTCTATCTTCCTATTTCC 58.698 45.833 0.00 0.00 0.00 3.13
63 64 5.743422 GCACCAGTCTATCTTCCTATTTCCC 60.743 48.000 0.00 0.00 0.00 3.97
64 65 4.908481 ACCAGTCTATCTTCCTATTTCCCC 59.092 45.833 0.00 0.00 0.00 4.81
65 66 4.021016 CCAGTCTATCTTCCTATTTCCCCG 60.021 50.000 0.00 0.00 0.00 5.73
66 67 4.021016 CAGTCTATCTTCCTATTTCCCCGG 60.021 50.000 0.00 0.00 0.00 5.73
67 68 2.904434 TCTATCTTCCTATTTCCCCGGC 59.096 50.000 0.00 0.00 0.00 6.13
68 69 1.518367 ATCTTCCTATTTCCCCGGCA 58.482 50.000 0.00 0.00 0.00 5.69
69 70 1.291109 TCTTCCTATTTCCCCGGCAA 58.709 50.000 0.00 0.00 0.00 4.52
70 71 1.850345 TCTTCCTATTTCCCCGGCAAT 59.150 47.619 0.00 0.00 0.00 3.56
71 72 1.956477 CTTCCTATTTCCCCGGCAATG 59.044 52.381 0.00 0.00 0.00 2.82
72 73 0.184933 TCCTATTTCCCCGGCAATGG 59.815 55.000 0.00 0.00 0.00 3.16
73 74 0.184933 CCTATTTCCCCGGCAATGGA 59.815 55.000 0.00 0.00 0.00 3.41
74 75 1.410932 CCTATTTCCCCGGCAATGGAA 60.411 52.381 5.86 5.86 38.84 3.53
75 76 2.597455 CTATTTCCCCGGCAATGGAAT 58.403 47.619 10.29 1.37 40.22 3.01
76 77 1.413118 ATTTCCCCGGCAATGGAATC 58.587 50.000 10.29 0.00 40.22 2.52
77 78 0.334676 TTTCCCCGGCAATGGAATCT 59.665 50.000 10.29 0.00 40.22 2.40
78 79 0.106719 TTCCCCGGCAATGGAATCTC 60.107 55.000 5.86 0.00 35.75 2.75
79 80 1.529244 CCCCGGCAATGGAATCTCC 60.529 63.158 0.00 0.00 36.96 3.71
80 81 1.533711 CCCGGCAATGGAATCTCCT 59.466 57.895 0.00 0.00 37.46 3.69
81 82 0.536006 CCCGGCAATGGAATCTCCTC 60.536 60.000 0.00 0.00 37.46 3.71
82 83 0.471617 CCGGCAATGGAATCTCCTCT 59.528 55.000 0.00 0.00 37.46 3.69
83 84 1.694150 CCGGCAATGGAATCTCCTCTA 59.306 52.381 0.00 0.00 37.46 2.43
84 85 2.304180 CCGGCAATGGAATCTCCTCTAT 59.696 50.000 0.00 0.00 37.46 1.98
85 86 3.594134 CGGCAATGGAATCTCCTCTATC 58.406 50.000 0.00 0.00 37.46 2.08
86 87 3.007290 CGGCAATGGAATCTCCTCTATCA 59.993 47.826 0.00 0.00 37.46 2.15
87 88 4.323333 CGGCAATGGAATCTCCTCTATCAT 60.323 45.833 0.00 0.00 37.46 2.45
88 89 4.942483 GGCAATGGAATCTCCTCTATCATG 59.058 45.833 0.00 0.00 37.46 3.07
89 90 4.395542 GCAATGGAATCTCCTCTATCATGC 59.604 45.833 0.00 0.00 37.46 4.06
90 91 4.840716 ATGGAATCTCCTCTATCATGCC 57.159 45.455 0.00 0.00 37.46 4.40
91 92 3.866816 TGGAATCTCCTCTATCATGCCT 58.133 45.455 0.00 0.00 37.46 4.75
92 93 3.581770 TGGAATCTCCTCTATCATGCCTG 59.418 47.826 0.00 0.00 37.46 4.85
93 94 3.837146 GGAATCTCCTCTATCATGCCTGA 59.163 47.826 0.00 0.00 32.53 3.86
94 95 4.285517 GGAATCTCCTCTATCATGCCTGAA 59.714 45.833 0.00 0.00 31.87 3.02
95 96 5.481105 GAATCTCCTCTATCATGCCTGAAG 58.519 45.833 0.00 0.00 34.37 3.02
96 97 4.190370 TCTCCTCTATCATGCCTGAAGA 57.810 45.455 0.00 0.61 34.37 2.87
97 98 3.894427 TCTCCTCTATCATGCCTGAAGAC 59.106 47.826 0.00 0.00 34.37 3.01
98 99 2.968574 TCCTCTATCATGCCTGAAGACC 59.031 50.000 0.00 0.00 34.37 3.85
99 100 2.288702 CCTCTATCATGCCTGAAGACCG 60.289 54.545 0.00 0.00 34.37 4.79
100 101 1.069204 TCTATCATGCCTGAAGACCGC 59.931 52.381 0.00 0.00 34.37 5.68
101 102 0.106708 TATCATGCCTGAAGACCGCC 59.893 55.000 0.00 0.00 34.37 6.13
102 103 2.615227 ATCATGCCTGAAGACCGCCC 62.615 60.000 0.00 0.00 34.37 6.13
103 104 4.115199 ATGCCTGAAGACCGCCCC 62.115 66.667 0.00 0.00 0.00 5.80
106 107 4.452733 CCTGAAGACCGCCCCGAC 62.453 72.222 0.00 0.00 0.00 4.79
107 108 3.691342 CTGAAGACCGCCCCGACA 61.691 66.667 0.00 0.00 0.00 4.35
108 109 3.000819 TGAAGACCGCCCCGACAT 61.001 61.111 0.00 0.00 0.00 3.06
109 110 2.267961 GAAGACCGCCCCGACATT 59.732 61.111 0.00 0.00 0.00 2.71
110 111 2.046314 AAGACCGCCCCGACATTG 60.046 61.111 0.00 0.00 0.00 2.82
111 112 4.778143 AGACCGCCCCGACATTGC 62.778 66.667 0.00 0.00 0.00 3.56
117 118 3.727258 CCCCGACATTGCCCCTGA 61.727 66.667 0.00 0.00 0.00 3.86
118 119 2.124570 CCCGACATTGCCCCTGAG 60.125 66.667 0.00 0.00 0.00 3.35
119 120 2.825836 CCGACATTGCCCCTGAGC 60.826 66.667 0.00 0.00 0.00 4.26
120 121 2.046023 CGACATTGCCCCTGAGCA 60.046 61.111 0.00 0.00 42.17 4.26
121 122 2.401766 CGACATTGCCCCTGAGCAC 61.402 63.158 0.00 0.00 43.97 4.40
122 123 1.303561 GACATTGCCCCTGAGCACA 60.304 57.895 0.00 0.00 43.97 4.57
123 124 0.682209 GACATTGCCCCTGAGCACAT 60.682 55.000 0.00 0.00 43.97 3.21
124 125 0.682209 ACATTGCCCCTGAGCACATC 60.682 55.000 0.00 0.00 43.97 3.06
125 126 0.681887 CATTGCCCCTGAGCACATCA 60.682 55.000 0.00 0.00 43.97 3.07
126 127 0.260816 ATTGCCCCTGAGCACATCAT 59.739 50.000 0.00 0.00 43.97 2.45
127 128 0.040058 TTGCCCCTGAGCACATCATT 59.960 50.000 0.00 0.00 43.97 2.57
128 129 0.918258 TGCCCCTGAGCACATCATTA 59.082 50.000 0.00 0.00 38.00 1.90
129 130 1.284491 TGCCCCTGAGCACATCATTAA 59.716 47.619 0.00 0.00 38.00 1.40
130 131 2.291475 TGCCCCTGAGCACATCATTAAA 60.291 45.455 0.00 0.00 38.00 1.52
131 132 2.760092 GCCCCTGAGCACATCATTAAAA 59.240 45.455 0.00 0.00 37.28 1.52
132 133 3.195396 GCCCCTGAGCACATCATTAAAAA 59.805 43.478 0.00 0.00 37.28 1.94
133 134 4.747810 CCCCTGAGCACATCATTAAAAAC 58.252 43.478 0.00 0.00 37.28 2.43
134 135 4.463891 CCCCTGAGCACATCATTAAAAACT 59.536 41.667 0.00 0.00 37.28 2.66
135 136 5.404946 CCCTGAGCACATCATTAAAAACTG 58.595 41.667 0.00 0.00 37.28 3.16
136 137 5.183713 CCCTGAGCACATCATTAAAAACTGA 59.816 40.000 0.00 0.00 37.28 3.41
137 138 6.294675 CCCTGAGCACATCATTAAAAACTGAA 60.295 38.462 0.00 0.00 37.28 3.02
138 139 6.805271 CCTGAGCACATCATTAAAAACTGAAG 59.195 38.462 0.00 0.00 37.28 3.02
139 140 7.275888 TGAGCACATCATTAAAAACTGAAGT 57.724 32.000 0.00 0.00 31.12 3.01
140 141 8.389779 TGAGCACATCATTAAAAACTGAAGTA 57.610 30.769 0.00 0.00 31.12 2.24
141 142 9.013229 TGAGCACATCATTAAAAACTGAAGTAT 57.987 29.630 0.00 0.00 31.12 2.12
142 143 9.846248 GAGCACATCATTAAAAACTGAAGTATT 57.154 29.630 0.00 0.00 0.00 1.89
154 155 2.544480 GAAGTATTCGTTGCCAAGGC 57.456 50.000 3.61 3.61 34.17 4.35
155 156 1.810151 GAAGTATTCGTTGCCAAGGCA 59.190 47.619 10.24 10.24 42.20 4.75
156 157 2.423538 GAAGTATTCGTTGCCAAGGCAT 59.576 45.455 15.49 1.74 42.95 4.40
157 158 3.487544 GAAGTATTCGTTGCCAAGGCATC 60.488 47.826 15.49 13.10 42.95 3.91
158 159 6.502030 GAAGTATTCGTTGCCAAGGCATCC 62.502 50.000 15.49 7.83 42.95 3.51
164 165 4.126524 GCCAAGGCATCCGACTAC 57.873 61.111 6.14 0.00 41.49 2.73
165 166 1.522569 GCCAAGGCATCCGACTACT 59.477 57.895 6.14 0.00 41.49 2.57
166 167 0.107654 GCCAAGGCATCCGACTACTT 60.108 55.000 6.14 0.00 41.49 2.24
167 168 1.656652 CCAAGGCATCCGACTACTTG 58.343 55.000 0.00 0.00 38.52 3.16
168 169 1.207089 CCAAGGCATCCGACTACTTGA 59.793 52.381 0.00 0.00 40.60 3.02
169 170 2.544685 CAAGGCATCCGACTACTTGAG 58.455 52.381 0.00 0.00 40.60 3.02
170 171 1.853963 AGGCATCCGACTACTTGAGT 58.146 50.000 0.00 0.00 42.90 3.41
171 172 2.180276 AGGCATCCGACTACTTGAGTT 58.820 47.619 0.00 0.00 39.06 3.01
172 173 2.567615 AGGCATCCGACTACTTGAGTTT 59.432 45.455 0.00 0.00 39.06 2.66
173 174 3.008049 AGGCATCCGACTACTTGAGTTTT 59.992 43.478 0.00 0.00 39.06 2.43
174 175 4.222145 AGGCATCCGACTACTTGAGTTTTA 59.778 41.667 0.00 0.00 39.06 1.52
175 176 4.933400 GGCATCCGACTACTTGAGTTTTAA 59.067 41.667 0.00 0.00 39.06 1.52
176 177 5.163884 GGCATCCGACTACTTGAGTTTTAAC 60.164 44.000 0.00 0.00 39.06 2.01
177 178 5.638234 GCATCCGACTACTTGAGTTTTAACT 59.362 40.000 0.00 0.00 39.06 2.24
178 179 6.810182 GCATCCGACTACTTGAGTTTTAACTA 59.190 38.462 0.00 0.00 39.06 2.24
179 180 7.201418 GCATCCGACTACTTGAGTTTTAACTAC 60.201 40.741 0.00 0.00 39.06 2.73
180 181 6.373779 TCCGACTACTTGAGTTTTAACTACG 58.626 40.000 0.00 0.00 39.06 3.51
181 182 6.204688 TCCGACTACTTGAGTTTTAACTACGA 59.795 38.462 0.00 0.00 39.06 3.43
182 183 6.304208 CCGACTACTTGAGTTTTAACTACGAC 59.696 42.308 0.00 0.00 39.06 4.34
183 184 6.852853 CGACTACTTGAGTTTTAACTACGACA 59.147 38.462 0.00 0.00 39.06 4.35
184 185 7.059260 CGACTACTTGAGTTTTAACTACGACAG 59.941 40.741 0.00 0.00 39.06 3.51
185 186 5.902051 ACTTGAGTTTTAACTACGACAGC 57.098 39.130 0.00 0.00 39.88 4.40
186 187 5.598769 ACTTGAGTTTTAACTACGACAGCT 58.401 37.500 0.00 0.00 39.88 4.24
187 188 6.047231 ACTTGAGTTTTAACTACGACAGCTT 58.953 36.000 0.00 0.00 39.88 3.74
188 189 6.537660 ACTTGAGTTTTAACTACGACAGCTTT 59.462 34.615 0.00 0.00 39.88 3.51
189 190 7.707893 ACTTGAGTTTTAACTACGACAGCTTTA 59.292 33.333 0.00 0.00 39.88 1.85
190 191 7.398834 TGAGTTTTAACTACGACAGCTTTAC 57.601 36.000 0.00 0.00 39.88 2.01
191 192 6.979817 TGAGTTTTAACTACGACAGCTTTACA 59.020 34.615 0.00 0.00 39.88 2.41
192 193 7.492020 TGAGTTTTAACTACGACAGCTTTACAA 59.508 33.333 0.00 0.00 39.88 2.41
193 194 8.200364 AGTTTTAACTACGACAGCTTTACAAA 57.800 30.769 0.00 0.00 37.52 2.83
194 195 8.833493 AGTTTTAACTACGACAGCTTTACAAAT 58.167 29.630 0.00 0.00 37.52 2.32
199 200 6.772078 ACTACGACAGCTTTACAAATATTGC 58.228 36.000 0.00 0.00 0.00 3.56
200 201 5.880054 ACGACAGCTTTACAAATATTGCT 57.120 34.783 0.00 0.00 0.00 3.91
217 218 3.000819 TGAAGACCGCCCCGACAT 61.001 61.111 0.00 0.00 0.00 3.06
229 230 2.046023 CGACATTGCCCCTGAGCA 60.046 61.111 0.00 0.00 42.17 4.26
244 245 5.404946 CCCTGAGCACATCATTAAAAACTG 58.595 41.667 0.00 0.00 37.28 3.16
276 284 1.398390 GCCAAAGCATCCGACTACTTG 59.602 52.381 0.00 0.00 39.53 3.16
289 297 6.373779 TCCGACTACTTGAGTTTTAACTACG 58.626 40.000 0.00 0.00 39.06 3.51
291 299 6.304208 CCGACTACTTGAGTTTTAACTACGAC 59.696 42.308 0.00 0.00 39.06 4.34
294 302 5.902051 ACTTGAGTTTTAACTACGACAGC 57.098 39.130 0.00 0.00 39.88 4.40
297 305 6.537660 ACTTGAGTTTTAACTACGACAGCTTT 59.462 34.615 0.00 0.00 39.88 3.51
299 307 7.398834 TGAGTTTTAACTACGACAGCTTTAC 57.601 36.000 0.00 0.00 39.88 2.01
315 323 4.119136 GCTTTACAAATATTGCCGCCAAT 58.881 39.130 0.00 0.00 43.74 3.16
331 339 1.341080 CAATCTGGGCCCAAGTGTTT 58.659 50.000 28.29 12.79 0.00 2.83
346 354 7.312899 CCCAAGTGTTTCATTTTCTATACACC 58.687 38.462 0.00 0.00 37.25 4.16
348 356 8.522830 CCAAGTGTTTCATTTTCTATACACCAT 58.477 33.333 0.00 0.00 37.25 3.55
355 363 6.345298 TCATTTTCTATACACCATCGAAGCA 58.655 36.000 0.00 0.00 0.00 3.91
357 365 3.349488 TCTATACACCATCGAAGCACG 57.651 47.619 0.00 0.00 44.09 5.34
365 373 3.881952 ATCGAAGCACGCCACTGCA 62.882 57.895 0.00 0.00 39.86 4.41
375 383 0.595588 CGCCACTGCAAACCAACATA 59.404 50.000 0.00 0.00 37.32 2.29
381 389 4.865925 CCACTGCAAACCAACATATGATTG 59.134 41.667 10.38 9.93 0.00 2.67
433 444 4.835615 ACACATCAGAGTTGTCCTAGACTT 59.164 41.667 0.00 0.00 33.15 3.01
434 445 5.167121 CACATCAGAGTTGTCCTAGACTTG 58.833 45.833 0.00 0.00 33.15 3.16
436 447 5.719085 ACATCAGAGTTGTCCTAGACTTGAT 59.281 40.000 0.00 0.00 33.15 2.57
441 452 7.615757 TCAGAGTTGTCCTAGACTTGATATTGA 59.384 37.037 0.00 0.00 33.15 2.57
458 470 8.606040 TGATATTGATGTCGCATTATTTCTGA 57.394 30.769 0.00 0.00 0.00 3.27
486 498 0.366871 CAGACTTTCGGCGATGTTCG 59.633 55.000 11.76 4.79 43.89 3.95
490 502 0.787787 CTTTCGGCGATGTTCGTTCA 59.212 50.000 11.76 0.00 42.81 3.18
502 514 3.423154 CGTTCAGTGGAAGGCGCC 61.423 66.667 21.89 21.89 32.78 6.53
527 539 7.384115 CCTGTAGTGACTTCGTAAAATCTCAAA 59.616 37.037 0.00 0.00 0.00 2.69
531 543 8.154649 AGTGACTTCGTAAAATCTCAAAATGT 57.845 30.769 0.00 0.00 0.00 2.71
540 552 5.659440 AAATCTCAAAATGTTATGCCGGT 57.341 34.783 1.90 0.00 0.00 5.28
544 556 4.155826 TCTCAAAATGTTATGCCGGTTCAG 59.844 41.667 1.90 0.00 0.00 3.02
558 570 0.674534 GTTCAGTCTCTCGGTGGTGT 59.325 55.000 0.00 0.00 0.00 4.16
598 610 4.813697 TGCGTGCATGCATTTATAGAAGTA 59.186 37.500 29.30 1.80 40.62 2.24
600 612 6.183360 TGCGTGCATGCATTTATAGAAGTAAA 60.183 34.615 29.30 0.60 40.62 2.01
601 613 6.140737 GCGTGCATGCATTTATAGAAGTAAAC 59.859 38.462 25.64 3.62 34.15 2.01
602 614 7.186128 CGTGCATGCATTTATAGAAGTAAACA 58.814 34.615 25.64 0.00 0.00 2.83
623 635 5.783111 ACATATGCTTATGTATGTGAGCGA 58.217 37.500 20.41 0.00 45.21 4.93
636 648 2.228103 TGTGAGCGACTTCGATTGTACT 59.772 45.455 2.02 0.00 43.02 2.73
637 649 2.594654 GTGAGCGACTTCGATTGTACTG 59.405 50.000 2.02 0.00 43.02 2.74
639 651 1.816835 AGCGACTTCGATTGTACTGGA 59.183 47.619 2.02 0.00 43.02 3.86
640 652 2.230508 AGCGACTTCGATTGTACTGGAA 59.769 45.455 2.02 0.00 43.02 3.53
641 653 2.599082 GCGACTTCGATTGTACTGGAAG 59.401 50.000 2.02 11.54 43.02 3.46
642 654 3.179830 CGACTTCGATTGTACTGGAAGG 58.820 50.000 15.21 1.87 43.02 3.46
643 655 3.522553 GACTTCGATTGTACTGGAAGGG 58.477 50.000 15.21 0.00 40.06 3.95
644 656 2.280628 CTTCGATTGTACTGGAAGGGC 58.719 52.381 0.00 0.00 39.30 5.19
645 657 0.174845 TCGATTGTACTGGAAGGGCG 59.825 55.000 0.00 0.00 39.30 6.13
646 658 1.429148 CGATTGTACTGGAAGGGCGC 61.429 60.000 0.00 0.00 39.30 6.53
664 676 2.287644 GCGCCACTTGCAAAAGAAAAAT 59.712 40.909 0.00 0.00 41.33 1.82
673 686 8.966194 CACTTGCAAAAGAAAAATTGTGTTTTT 58.034 25.926 0.00 0.00 34.64 1.94
705 718 1.754226 GGAACCAAAGCTGACCAAACA 59.246 47.619 0.00 0.00 0.00 2.83
710 723 1.115326 AAAGCTGACCAAACAGGCCC 61.115 55.000 0.00 0.00 43.14 5.80
775 788 2.589540 CCAGGCACGGGCTAATCA 59.410 61.111 10.74 0.00 36.55 2.57
776 789 1.149174 CCAGGCACGGGCTAATCAT 59.851 57.895 10.74 0.00 36.55 2.45
777 790 1.168407 CCAGGCACGGGCTAATCATG 61.168 60.000 10.74 0.00 36.55 3.07
787 800 0.601558 GCTAATCATGCCATGCCAGG 59.398 55.000 0.00 0.00 0.00 4.45
845 3283 0.530744 TCAGCACGGCTCGATTACTT 59.469 50.000 1.50 0.00 36.40 2.24
859 3297 4.583489 TCGATTACTTTGGCTACCTCCTAG 59.417 45.833 0.00 0.00 0.00 3.02
860 3298 4.341520 CGATTACTTTGGCTACCTCCTAGT 59.658 45.833 0.00 0.00 0.00 2.57
861 3299 5.533903 CGATTACTTTGGCTACCTCCTAGTA 59.466 44.000 0.00 0.00 0.00 1.82
862 3300 6.514705 CGATTACTTTGGCTACCTCCTAGTAC 60.515 46.154 0.00 0.00 0.00 2.73
864 3302 3.245875 ACTTTGGCTACCTCCTAGTACCA 60.246 47.826 0.00 0.00 0.00 3.25
865 3303 2.750141 TGGCTACCTCCTAGTACCAG 57.250 55.000 0.00 0.00 0.00 4.00
867 3305 2.584031 TGGCTACCTCCTAGTACCAGAA 59.416 50.000 0.00 0.00 0.00 3.02
868 3306 3.012047 TGGCTACCTCCTAGTACCAGAAA 59.988 47.826 0.00 0.00 0.00 2.52
869 3307 3.637694 GGCTACCTCCTAGTACCAGAAAG 59.362 52.174 0.00 0.00 0.00 2.62
870 3308 4.534797 GCTACCTCCTAGTACCAGAAAGA 58.465 47.826 0.00 0.00 0.00 2.52
871 3309 4.581409 GCTACCTCCTAGTACCAGAAAGAG 59.419 50.000 0.00 0.00 0.00 2.85
872 3310 4.949966 ACCTCCTAGTACCAGAAAGAGA 57.050 45.455 0.00 0.00 0.00 3.10
873 3311 5.475398 ACCTCCTAGTACCAGAAAGAGAT 57.525 43.478 0.00 0.00 0.00 2.75
874 3312 5.451354 ACCTCCTAGTACCAGAAAGAGATC 58.549 45.833 0.00 0.00 0.00 2.75
875 3313 5.044030 ACCTCCTAGTACCAGAAAGAGATCA 60.044 44.000 0.00 0.00 0.00 2.92
876 3314 5.534654 CCTCCTAGTACCAGAAAGAGATCAG 59.465 48.000 0.00 0.00 0.00 2.90
877 3315 4.890581 TCCTAGTACCAGAAAGAGATCAGC 59.109 45.833 0.00 0.00 0.00 4.26
878 3316 4.038642 CCTAGTACCAGAAAGAGATCAGCC 59.961 50.000 0.00 0.00 0.00 4.85
879 3317 3.718723 AGTACCAGAAAGAGATCAGCCT 58.281 45.455 0.00 0.00 0.00 4.58
880 3318 4.873010 AGTACCAGAAAGAGATCAGCCTA 58.127 43.478 0.00 0.00 0.00 3.93
881 3319 5.273208 AGTACCAGAAAGAGATCAGCCTAA 58.727 41.667 0.00 0.00 0.00 2.69
882 3320 5.721960 AGTACCAGAAAGAGATCAGCCTAAA 59.278 40.000 0.00 0.00 0.00 1.85
883 3321 5.505181 ACCAGAAAGAGATCAGCCTAAAA 57.495 39.130 0.00 0.00 0.00 1.52
884 3322 5.880901 ACCAGAAAGAGATCAGCCTAAAAA 58.119 37.500 0.00 0.00 0.00 1.94
959 3397 2.302157 CCTTTGGTTCTTCTACCTCGGT 59.698 50.000 0.00 0.00 39.04 4.69
1060 3498 2.654912 GCGCTCACGTACGTGCTTT 61.655 57.895 37.13 6.51 45.04 3.51
1090 3528 4.697756 CCATCGTGTGGGTGCCGT 62.698 66.667 2.24 0.00 44.79 5.68
1299 3737 0.595567 CGTTCGTGTTCTGGTTCGGA 60.596 55.000 0.00 0.00 0.00 4.55
1576 4017 6.827727 ACCACTTGTCTTTACAGAACTACAT 58.172 36.000 0.00 0.00 36.83 2.29
1577 4018 7.280356 ACCACTTGTCTTTACAGAACTACATT 58.720 34.615 0.00 0.00 36.83 2.71
1635 4102 5.048434 AGTCTTGCTAAAATCTTGGTTGCTC 60.048 40.000 0.00 0.00 0.00 4.26
1669 4136 2.375174 AGGGTGTGCCATCTCTTTACAA 59.625 45.455 0.00 0.00 36.17 2.41
1677 4144 8.726988 GTGTGCCATCTCTTTACAAAACTATAA 58.273 33.333 0.00 0.00 0.00 0.98
1720 4224 7.701539 TGAACTTGGTGCTGTTATTGAATAT 57.298 32.000 0.00 0.00 0.00 1.28
1742 4246 3.305897 TGACAGTATGCACGCTTATTTCG 59.694 43.478 0.00 0.00 42.53 3.46
1743 4247 2.030457 ACAGTATGCACGCTTATTTCGC 59.970 45.455 0.00 0.00 42.53 4.70
1744 4248 2.030335 CAGTATGCACGCTTATTTCGCA 59.970 45.455 0.00 0.00 36.95 5.10
1745 4249 2.675844 AGTATGCACGCTTATTTCGCAA 59.324 40.909 0.00 0.00 35.98 4.85
1746 4250 2.849880 ATGCACGCTTATTTCGCAAT 57.150 40.000 0.00 0.00 35.98 3.56
1747 4251 2.627863 TGCACGCTTATTTCGCAATT 57.372 40.000 0.00 0.00 0.00 2.32
1748 4252 2.514902 TGCACGCTTATTTCGCAATTC 58.485 42.857 0.00 0.00 0.00 2.17
1749 4253 2.095516 TGCACGCTTATTTCGCAATTCA 60.096 40.909 0.00 0.00 0.00 2.57
1939 4472 2.047061 TCCCTCACAGTTTGTAGCTGT 58.953 47.619 0.00 0.00 46.86 4.40
2594 9957 0.379669 CCCTGCGCAGATTGATTGAC 59.620 55.000 38.06 0.00 0.00 3.18
2945 15540 7.068962 TGACGATATCACCTAACTGGAACATTA 59.931 37.037 3.12 0.00 39.71 1.90
3088 15693 1.782201 TTGACATCCCTGCAGGCACT 61.782 55.000 28.39 10.69 43.88 4.40
3127 15732 8.853126 CCTATTATTGACATTCACCATGATGTT 58.147 33.333 0.00 0.00 36.24 2.71
3361 15968 0.774096 TGATGACCCTCCAACCCCAA 60.774 55.000 0.00 0.00 0.00 4.12
3520 16161 3.961477 TGAAAGTGTGTATGTGTGTGC 57.039 42.857 0.00 0.00 0.00 4.57
3713 17951 1.303236 TCATGTTTGGCCCACGAGG 60.303 57.895 0.00 0.00 39.47 4.63
3733 17971 4.164981 AGGTCTTGATAGTGGTGTGGTTA 58.835 43.478 0.00 0.00 0.00 2.85
3745 17983 3.617735 TGGTTAGTCGGCGTGGCA 61.618 61.111 6.85 0.00 0.00 4.92
3869 18112 0.756294 TGCTTCGACCACTTTCTCCA 59.244 50.000 0.00 0.00 0.00 3.86
3874 18117 1.616865 TCGACCACTTTCTCCAACGAT 59.383 47.619 0.00 0.00 0.00 3.73
4002 18579 4.274705 TCTTCAACTATTTTTGCGCTCACA 59.725 37.500 9.73 0.00 0.00 3.58
4231 19069 9.871238 TCCAGACAACTTAGAGACATATAAAAC 57.129 33.333 0.00 0.00 0.00 2.43
4233 19071 9.653287 CAGACAACTTAGAGACATATAAAACCA 57.347 33.333 0.00 0.00 0.00 3.67
4275 19117 8.613922 AATTTCAAGATGGGATTGTTCCTATT 57.386 30.769 0.00 0.00 42.85 1.73
4348 19190 2.852449 TCCATAGTTCAATCCCCTTGCT 59.148 45.455 0.00 0.00 34.66 3.91
4349 19191 2.954318 CCATAGTTCAATCCCCTTGCTG 59.046 50.000 0.00 0.00 34.66 4.41
4351 19193 0.407139 AGTTCAATCCCCTTGCTGCT 59.593 50.000 0.00 0.00 34.66 4.24
4352 19194 0.813821 GTTCAATCCCCTTGCTGCTC 59.186 55.000 0.00 0.00 34.66 4.26
4353 19195 0.677731 TTCAATCCCCTTGCTGCTCG 60.678 55.000 0.00 0.00 34.66 5.03
4355 19197 1.078143 AATCCCCTTGCTGCTCGTC 60.078 57.895 0.00 0.00 0.00 4.20
4356 19198 1.841302 AATCCCCTTGCTGCTCGTCA 61.841 55.000 0.00 0.00 0.00 4.35
4357 19199 2.249413 ATCCCCTTGCTGCTCGTCAG 62.249 60.000 0.00 3.64 45.62 3.51
4359 19201 1.302033 CCCTTGCTGCTCGTCAGTT 60.302 57.895 0.00 0.00 44.66 3.16
4362 19214 0.664466 CTTGCTGCTCGTCAGTTCGA 60.664 55.000 0.00 0.00 44.66 3.71
4369 19221 1.452399 GCTCGTCAGTTCGACAGAAAC 59.548 52.381 0.00 0.00 45.70 2.78
4371 19223 3.113322 CTCGTCAGTTCGACAGAAACAA 58.887 45.455 0.00 0.00 45.70 2.83
4377 19229 6.353582 CGTCAGTTCGACAGAAACAAAAATAC 59.646 38.462 0.00 0.00 45.70 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.285851 CGGAAGCCTTGACACTCC 57.714 61.111 0.00 0.00 0.00 3.85
17 18 2.202756 GTGTCCTAGCGGCGGAAG 60.203 66.667 9.78 0.00 31.13 3.46
18 19 3.766691 GGTGTCCTAGCGGCGGAA 61.767 66.667 9.78 0.00 31.13 4.30
19 20 4.753662 AGGTGTCCTAGCGGCGGA 62.754 66.667 9.78 0.00 28.47 5.54
20 21 4.514577 CAGGTGTCCTAGCGGCGG 62.515 72.222 9.78 0.00 29.64 6.13
24 25 4.435436 TGCGCAGGTGTCCTAGCG 62.435 66.667 5.66 19.71 46.01 4.26
25 26 2.815647 GTGCGCAGGTGTCCTAGC 60.816 66.667 12.22 0.00 37.12 3.42
26 27 2.125512 GGTGCGCAGGTGTCCTAG 60.126 66.667 12.22 0.00 29.64 3.02
27 28 2.920384 TGGTGCGCAGGTGTCCTA 60.920 61.111 12.22 0.00 29.64 2.94
28 29 4.320456 CTGGTGCGCAGGTGTCCT 62.320 66.667 12.22 0.00 0.00 3.85
29 30 4.626081 ACTGGTGCGCAGGTGTCC 62.626 66.667 12.22 9.06 0.00 4.02
30 31 2.154798 TAGACTGGTGCGCAGGTGTC 62.155 60.000 12.22 18.62 0.00 3.67
31 32 1.544825 ATAGACTGGTGCGCAGGTGT 61.545 55.000 12.22 9.88 0.00 4.16
32 33 0.807667 GATAGACTGGTGCGCAGGTG 60.808 60.000 12.22 6.07 0.00 4.00
33 34 0.972983 AGATAGACTGGTGCGCAGGT 60.973 55.000 12.22 10.69 0.00 4.00
34 35 0.176680 AAGATAGACTGGTGCGCAGG 59.823 55.000 12.22 6.90 0.00 4.85
35 36 1.565305 GAAGATAGACTGGTGCGCAG 58.435 55.000 12.22 0.60 0.00 5.18
36 37 0.175760 GGAAGATAGACTGGTGCGCA 59.824 55.000 5.66 5.66 0.00 6.09
37 38 0.461961 AGGAAGATAGACTGGTGCGC 59.538 55.000 0.00 0.00 0.00 6.09
38 39 4.592485 AATAGGAAGATAGACTGGTGCG 57.408 45.455 0.00 0.00 0.00 5.34
39 40 5.301555 GGAAATAGGAAGATAGACTGGTGC 58.698 45.833 0.00 0.00 0.00 5.01
40 41 5.221742 GGGGAAATAGGAAGATAGACTGGTG 60.222 48.000 0.00 0.00 0.00 4.17
41 42 4.908481 GGGGAAATAGGAAGATAGACTGGT 59.092 45.833 0.00 0.00 0.00 4.00
42 43 4.021016 CGGGGAAATAGGAAGATAGACTGG 60.021 50.000 0.00 0.00 0.00 4.00
43 44 4.021016 CCGGGGAAATAGGAAGATAGACTG 60.021 50.000 0.00 0.00 0.00 3.51
44 45 4.161102 CCGGGGAAATAGGAAGATAGACT 58.839 47.826 0.00 0.00 0.00 3.24
45 46 3.306849 GCCGGGGAAATAGGAAGATAGAC 60.307 52.174 2.18 0.00 0.00 2.59
46 47 2.904434 GCCGGGGAAATAGGAAGATAGA 59.096 50.000 2.18 0.00 0.00 1.98
47 48 2.637872 TGCCGGGGAAATAGGAAGATAG 59.362 50.000 2.18 0.00 0.00 2.08
48 49 2.696775 TGCCGGGGAAATAGGAAGATA 58.303 47.619 2.18 0.00 0.00 1.98
49 50 1.518367 TGCCGGGGAAATAGGAAGAT 58.482 50.000 2.18 0.00 0.00 2.40
50 51 1.291109 TTGCCGGGGAAATAGGAAGA 58.709 50.000 2.18 0.00 0.00 2.87
51 52 1.956477 CATTGCCGGGGAAATAGGAAG 59.044 52.381 4.68 0.00 0.00 3.46
52 53 1.410932 CCATTGCCGGGGAAATAGGAA 60.411 52.381 4.68 0.00 0.00 3.36
53 54 0.184933 CCATTGCCGGGGAAATAGGA 59.815 55.000 4.68 0.00 0.00 2.94
54 55 0.184933 TCCATTGCCGGGGAAATAGG 59.815 55.000 4.68 8.15 0.00 2.57
55 56 2.065899 TTCCATTGCCGGGGAAATAG 57.934 50.000 4.68 0.00 40.11 1.73
56 57 2.176798 AGATTCCATTGCCGGGGAAATA 59.823 45.455 13.09 0.00 45.63 1.40
57 58 1.062962 AGATTCCATTGCCGGGGAAAT 60.063 47.619 13.09 3.82 45.63 2.17
58 59 0.334676 AGATTCCATTGCCGGGGAAA 59.665 50.000 13.09 0.00 45.63 3.13
59 60 0.106719 GAGATTCCATTGCCGGGGAA 60.107 55.000 11.70 11.70 46.48 3.97
60 61 1.531748 GAGATTCCATTGCCGGGGA 59.468 57.895 2.18 0.00 0.00 4.81
61 62 1.529244 GGAGATTCCATTGCCGGGG 60.529 63.158 2.18 0.00 36.28 5.73
62 63 0.536006 GAGGAGATTCCATTGCCGGG 60.536 60.000 2.18 0.00 39.61 5.73
63 64 0.471617 AGAGGAGATTCCATTGCCGG 59.528 55.000 0.00 0.00 39.61 6.13
64 65 3.007290 TGATAGAGGAGATTCCATTGCCG 59.993 47.826 0.00 0.00 39.61 5.69
65 66 4.630644 TGATAGAGGAGATTCCATTGCC 57.369 45.455 0.00 0.00 39.61 4.52
66 67 4.395542 GCATGATAGAGGAGATTCCATTGC 59.604 45.833 0.00 0.00 39.61 3.56
67 68 4.942483 GGCATGATAGAGGAGATTCCATTG 59.058 45.833 0.00 0.00 39.61 2.82
68 69 4.850963 AGGCATGATAGAGGAGATTCCATT 59.149 41.667 0.00 0.00 39.61 3.16
69 70 4.225492 CAGGCATGATAGAGGAGATTCCAT 59.775 45.833 0.00 0.00 39.61 3.41
70 71 3.581770 CAGGCATGATAGAGGAGATTCCA 59.418 47.826 0.00 0.00 39.61 3.53
71 72 3.837146 TCAGGCATGATAGAGGAGATTCC 59.163 47.826 0.00 0.00 36.58 3.01
72 73 5.245751 TCTTCAGGCATGATAGAGGAGATTC 59.754 44.000 0.03 0.00 34.73 2.52
73 74 5.011943 GTCTTCAGGCATGATAGAGGAGATT 59.988 44.000 0.03 0.00 34.73 2.40
74 75 4.527816 GTCTTCAGGCATGATAGAGGAGAT 59.472 45.833 0.03 0.00 34.73 2.75
75 76 3.894427 GTCTTCAGGCATGATAGAGGAGA 59.106 47.826 0.03 0.00 34.73 3.71
76 77 3.006752 GGTCTTCAGGCATGATAGAGGAG 59.993 52.174 0.03 0.00 34.73 3.69
77 78 2.968574 GGTCTTCAGGCATGATAGAGGA 59.031 50.000 0.03 0.00 34.73 3.71
78 79 2.288702 CGGTCTTCAGGCATGATAGAGG 60.289 54.545 0.03 0.49 34.73 3.69
79 80 2.865670 GCGGTCTTCAGGCATGATAGAG 60.866 54.545 0.03 0.00 34.73 2.43
80 81 1.069204 GCGGTCTTCAGGCATGATAGA 59.931 52.381 0.03 5.56 34.73 1.98
81 82 1.506493 GCGGTCTTCAGGCATGATAG 58.494 55.000 0.03 3.08 34.73 2.08
82 83 0.106708 GGCGGTCTTCAGGCATGATA 59.893 55.000 0.03 0.00 34.73 2.15
83 84 1.153086 GGCGGTCTTCAGGCATGAT 60.153 57.895 0.03 0.00 34.73 2.45
84 85 2.268920 GGCGGTCTTCAGGCATGA 59.731 61.111 0.00 0.00 34.82 3.07
85 86 2.825836 GGGCGGTCTTCAGGCATG 60.826 66.667 0.00 0.00 36.20 4.06
86 87 4.115199 GGGGCGGTCTTCAGGCAT 62.115 66.667 0.00 0.00 36.20 4.40
89 90 4.452733 GTCGGGGCGGTCTTCAGG 62.453 72.222 0.00 0.00 0.00 3.86
90 91 2.521958 AATGTCGGGGCGGTCTTCAG 62.522 60.000 0.00 0.00 0.00 3.02
91 92 2.589157 AATGTCGGGGCGGTCTTCA 61.589 57.895 0.00 0.00 0.00 3.02
92 93 2.106683 CAATGTCGGGGCGGTCTTC 61.107 63.158 0.00 0.00 0.00 2.87
93 94 2.046314 CAATGTCGGGGCGGTCTT 60.046 61.111 0.00 0.00 0.00 3.01
94 95 4.778143 GCAATGTCGGGGCGGTCT 62.778 66.667 0.00 0.00 0.00 3.85
100 101 3.704231 CTCAGGGGCAATGTCGGGG 62.704 68.421 0.00 0.00 0.00 5.73
101 102 2.124570 CTCAGGGGCAATGTCGGG 60.125 66.667 0.00 0.00 0.00 5.14
102 103 2.825836 GCTCAGGGGCAATGTCGG 60.826 66.667 0.00 0.00 0.00 4.79
103 104 2.046023 TGCTCAGGGGCAATGTCG 60.046 61.111 0.00 0.00 39.43 4.35
104 105 0.682209 ATGTGCTCAGGGGCAATGTC 60.682 55.000 0.00 0.00 44.18 3.06
105 106 0.682209 GATGTGCTCAGGGGCAATGT 60.682 55.000 0.00 0.00 44.18 2.71
106 107 0.681887 TGATGTGCTCAGGGGCAATG 60.682 55.000 0.00 0.00 44.18 2.82
107 108 0.260816 ATGATGTGCTCAGGGGCAAT 59.739 50.000 0.00 0.00 44.18 3.56
108 109 0.040058 AATGATGTGCTCAGGGGCAA 59.960 50.000 0.00 0.00 44.18 4.52
109 110 0.918258 TAATGATGTGCTCAGGGGCA 59.082 50.000 0.00 0.00 37.28 5.36
110 111 2.057137 TTAATGATGTGCTCAGGGGC 57.943 50.000 0.00 0.00 37.28 5.80
111 112 4.463891 AGTTTTTAATGATGTGCTCAGGGG 59.536 41.667 0.00 0.00 37.28 4.79
112 113 5.183713 TCAGTTTTTAATGATGTGCTCAGGG 59.816 40.000 0.00 0.00 37.28 4.45
113 114 6.258230 TCAGTTTTTAATGATGTGCTCAGG 57.742 37.500 0.00 0.00 37.28 3.86
114 115 7.365741 ACTTCAGTTTTTAATGATGTGCTCAG 58.634 34.615 0.00 0.00 37.28 3.35
115 116 7.275888 ACTTCAGTTTTTAATGATGTGCTCA 57.724 32.000 0.00 0.00 38.53 4.26
116 117 9.846248 AATACTTCAGTTTTTAATGATGTGCTC 57.154 29.630 0.00 0.00 35.91 4.26
117 118 9.846248 GAATACTTCAGTTTTTAATGATGTGCT 57.154 29.630 0.00 0.00 35.91 4.40
118 119 8.788813 CGAATACTTCAGTTTTTAATGATGTGC 58.211 33.333 0.00 0.00 35.91 4.57
119 120 9.825972 ACGAATACTTCAGTTTTTAATGATGTG 57.174 29.630 0.00 0.00 35.91 3.21
122 123 9.341899 GCAACGAATACTTCAGTTTTTAATGAT 57.658 29.630 0.00 0.00 0.00 2.45
123 124 7.806014 GGCAACGAATACTTCAGTTTTTAATGA 59.194 33.333 0.00 0.00 0.00 2.57
124 125 7.593273 TGGCAACGAATACTTCAGTTTTTAATG 59.407 33.333 0.00 0.00 42.51 1.90
125 126 7.653647 TGGCAACGAATACTTCAGTTTTTAAT 58.346 30.769 0.00 0.00 42.51 1.40
126 127 7.028926 TGGCAACGAATACTTCAGTTTTTAA 57.971 32.000 0.00 0.00 42.51 1.52
127 128 6.621316 TGGCAACGAATACTTCAGTTTTTA 57.379 33.333 0.00 0.00 42.51 1.52
128 129 5.508200 TGGCAACGAATACTTCAGTTTTT 57.492 34.783 0.00 0.00 42.51 1.94
129 130 5.507315 CCTTGGCAACGAATACTTCAGTTTT 60.507 40.000 0.00 0.00 42.51 2.43
130 131 4.023193 CCTTGGCAACGAATACTTCAGTTT 60.023 41.667 0.00 0.00 42.51 2.66
131 132 3.502211 CCTTGGCAACGAATACTTCAGTT 59.498 43.478 0.00 0.00 42.51 3.16
132 133 3.074412 CCTTGGCAACGAATACTTCAGT 58.926 45.455 0.00 0.00 42.51 3.41
133 134 2.159517 GCCTTGGCAACGAATACTTCAG 60.160 50.000 6.79 0.00 42.51 3.02
134 135 1.810151 GCCTTGGCAACGAATACTTCA 59.190 47.619 6.79 0.00 42.51 3.02
135 136 1.810151 TGCCTTGGCAACGAATACTTC 59.190 47.619 12.40 0.00 42.51 3.01
136 137 1.904287 TGCCTTGGCAACGAATACTT 58.096 45.000 12.40 0.00 42.51 2.24
137 138 2.017049 GATGCCTTGGCAACGAATACT 58.983 47.619 18.76 0.00 42.51 2.12
138 139 1.065551 GGATGCCTTGGCAACGAATAC 59.934 52.381 18.76 0.00 42.51 1.89
139 140 1.388547 GGATGCCTTGGCAACGAATA 58.611 50.000 18.76 0.00 42.51 1.75
140 141 1.656818 CGGATGCCTTGGCAACGAAT 61.657 55.000 26.50 9.73 42.51 3.34
141 142 2.331893 CGGATGCCTTGGCAACGAA 61.332 57.895 26.50 4.04 42.51 3.85
142 143 2.745884 CGGATGCCTTGGCAACGA 60.746 61.111 26.50 4.38 42.51 3.85
143 144 2.745884 TCGGATGCCTTGGCAACG 60.746 61.111 25.42 25.42 42.51 4.10
144 145 0.392461 TAGTCGGATGCCTTGGCAAC 60.392 55.000 18.76 15.47 0.00 4.17
145 146 0.392461 GTAGTCGGATGCCTTGGCAA 60.392 55.000 18.76 0.00 0.00 4.52
146 147 1.220749 GTAGTCGGATGCCTTGGCA 59.779 57.895 17.19 17.19 0.00 4.92
147 148 0.107654 AAGTAGTCGGATGCCTTGGC 60.108 55.000 4.43 4.43 0.00 4.52
148 149 1.207089 TCAAGTAGTCGGATGCCTTGG 59.793 52.381 11.19 0.00 34.65 3.61
149 150 2.093973 ACTCAAGTAGTCGGATGCCTTG 60.094 50.000 6.99 6.99 30.33 3.61
150 151 2.180276 ACTCAAGTAGTCGGATGCCTT 58.820 47.619 0.00 0.00 30.33 4.35
151 152 1.853963 ACTCAAGTAGTCGGATGCCT 58.146 50.000 0.00 0.00 30.33 4.75
152 153 2.674796 AACTCAAGTAGTCGGATGCC 57.325 50.000 0.00 0.00 37.50 4.40
153 154 5.638234 AGTTAAAACTCAAGTAGTCGGATGC 59.362 40.000 0.00 0.00 37.50 3.91
154 155 7.008086 CGTAGTTAAAACTCAAGTAGTCGGATG 59.992 40.741 0.00 0.00 37.50 3.51
155 156 7.025963 CGTAGTTAAAACTCAAGTAGTCGGAT 58.974 38.462 0.00 0.00 37.50 4.18
156 157 6.204688 TCGTAGTTAAAACTCAAGTAGTCGGA 59.795 38.462 0.00 0.00 37.50 4.55
157 158 6.304208 GTCGTAGTTAAAACTCAAGTAGTCGG 59.696 42.308 0.00 0.00 37.50 4.79
158 159 6.852853 TGTCGTAGTTAAAACTCAAGTAGTCG 59.147 38.462 0.00 0.00 37.50 4.18
159 160 7.148999 GCTGTCGTAGTTAAAACTCAAGTAGTC 60.149 40.741 0.00 0.00 37.50 2.59
160 161 6.640092 GCTGTCGTAGTTAAAACTCAAGTAGT 59.360 38.462 0.00 0.00 41.49 2.73
161 162 6.862090 AGCTGTCGTAGTTAAAACTCAAGTAG 59.138 38.462 0.00 0.00 40.37 2.57
162 163 6.742109 AGCTGTCGTAGTTAAAACTCAAGTA 58.258 36.000 0.00 0.00 40.37 2.24
163 164 5.598769 AGCTGTCGTAGTTAAAACTCAAGT 58.401 37.500 0.00 0.00 40.37 3.16
164 165 6.526566 AAGCTGTCGTAGTTAAAACTCAAG 57.473 37.500 0.00 0.00 40.37 3.02
165 166 6.913873 AAAGCTGTCGTAGTTAAAACTCAA 57.086 33.333 0.00 0.00 40.37 3.02
166 167 6.979817 TGTAAAGCTGTCGTAGTTAAAACTCA 59.020 34.615 0.00 0.00 40.37 3.41
167 168 7.398834 TGTAAAGCTGTCGTAGTTAAAACTC 57.601 36.000 0.00 0.00 40.37 3.01
168 169 7.775397 TTGTAAAGCTGTCGTAGTTAAAACT 57.225 32.000 0.39 0.39 42.91 2.66
169 170 8.998558 ATTTGTAAAGCTGTCGTAGTTAAAAC 57.001 30.769 0.00 0.00 0.00 2.43
173 174 8.385111 GCAATATTTGTAAAGCTGTCGTAGTTA 58.615 33.333 0.00 0.00 0.00 2.24
174 175 7.119262 AGCAATATTTGTAAAGCTGTCGTAGTT 59.881 33.333 0.00 0.00 0.00 2.24
175 176 6.594159 AGCAATATTTGTAAAGCTGTCGTAGT 59.406 34.615 0.00 0.00 0.00 2.73
176 177 6.901887 CAGCAATATTTGTAAAGCTGTCGTAG 59.098 38.462 12.67 0.00 43.16 3.51
177 178 6.592220 TCAGCAATATTTGTAAAGCTGTCGTA 59.408 34.615 17.73 2.26 46.87 3.43
178 179 5.411361 TCAGCAATATTTGTAAAGCTGTCGT 59.589 36.000 17.73 0.00 46.87 4.34
179 180 5.868257 TCAGCAATATTTGTAAAGCTGTCG 58.132 37.500 17.73 0.12 46.87 4.35
180 181 7.483059 GTCTTCAGCAATATTTGTAAAGCTGTC 59.517 37.037 17.73 8.01 46.87 3.51
181 182 7.308435 GTCTTCAGCAATATTTGTAAAGCTGT 58.692 34.615 17.73 0.00 46.87 4.40
183 184 6.403636 CGGTCTTCAGCAATATTTGTAAAGCT 60.404 38.462 0.00 0.00 0.00 3.74
184 185 5.739161 CGGTCTTCAGCAATATTTGTAAAGC 59.261 40.000 0.00 0.00 0.00 3.51
185 186 5.739161 GCGGTCTTCAGCAATATTTGTAAAG 59.261 40.000 0.00 0.00 35.02 1.85
186 187 5.392595 GGCGGTCTTCAGCAATATTTGTAAA 60.393 40.000 0.00 0.00 36.53 2.01
187 188 4.095782 GGCGGTCTTCAGCAATATTTGTAA 59.904 41.667 0.00 0.00 36.53 2.41
188 189 3.625764 GGCGGTCTTCAGCAATATTTGTA 59.374 43.478 0.00 0.00 36.53 2.41
189 190 2.423538 GGCGGTCTTCAGCAATATTTGT 59.576 45.455 0.00 0.00 36.53 2.83
190 191 2.223572 GGGCGGTCTTCAGCAATATTTG 60.224 50.000 0.00 0.00 36.53 2.32
191 192 2.024414 GGGCGGTCTTCAGCAATATTT 58.976 47.619 0.00 0.00 36.53 1.40
192 193 1.680338 GGGCGGTCTTCAGCAATATT 58.320 50.000 0.00 0.00 36.53 1.28
193 194 0.179018 GGGGCGGTCTTCAGCAATAT 60.179 55.000 0.00 0.00 36.53 1.28
194 195 1.223487 GGGGCGGTCTTCAGCAATA 59.777 57.895 0.00 0.00 36.53 1.90
195 196 2.044946 GGGGCGGTCTTCAGCAAT 60.045 61.111 0.00 0.00 36.53 3.56
196 197 4.697756 CGGGGCGGTCTTCAGCAA 62.698 66.667 0.00 0.00 36.53 3.91
199 200 2.521958 AATGTCGGGGCGGTCTTCAG 62.522 60.000 0.00 0.00 0.00 3.02
200 201 2.589157 AATGTCGGGGCGGTCTTCA 61.589 57.895 0.00 0.00 0.00 3.02
201 202 2.106683 CAATGTCGGGGCGGTCTTC 61.107 63.158 0.00 0.00 0.00 2.87
202 203 2.046314 CAATGTCGGGGCGGTCTT 60.046 61.111 0.00 0.00 0.00 3.01
203 204 4.778143 GCAATGTCGGGGCGGTCT 62.778 66.667 0.00 0.00 0.00 3.85
217 218 0.040058 AATGATGTGCTCAGGGGCAA 59.960 50.000 0.00 0.00 44.18 4.52
261 269 3.963428 AAACTCAAGTAGTCGGATGCT 57.037 42.857 0.00 0.00 37.50 3.79
276 284 7.398834 TGTAAAGCTGTCGTAGTTAAAACTC 57.601 36.000 0.00 0.00 40.37 3.01
289 297 3.791353 GCGGCAATATTTGTAAAGCTGTC 59.209 43.478 0.00 0.00 0.00 3.51
291 299 3.115554 GGCGGCAATATTTGTAAAGCTG 58.884 45.455 3.07 0.00 0.00 4.24
294 302 5.459762 CAGATTGGCGGCAATATTTGTAAAG 59.540 40.000 33.90 15.26 0.00 1.85
297 305 3.317711 CCAGATTGGCGGCAATATTTGTA 59.682 43.478 33.90 7.75 0.00 2.41
299 307 2.546373 CCCAGATTGGCGGCAATATTTG 60.546 50.000 33.90 28.17 35.79 2.32
304 312 3.149648 GCCCAGATTGGCGGCAAT 61.150 61.111 34.30 34.30 42.54 3.56
315 323 0.482446 ATGAAACACTTGGGCCCAGA 59.518 50.000 26.87 15.22 0.00 3.86
327 335 8.554835 TTCGATGGTGTATAGAAAATGAAACA 57.445 30.769 0.00 0.00 29.05 2.83
331 339 6.257849 GTGCTTCGATGGTGTATAGAAAATGA 59.742 38.462 0.00 0.00 31.32 2.57
346 354 2.780643 CAGTGGCGTGCTTCGATG 59.219 61.111 6.11 0.00 42.86 3.84
348 356 4.600576 TGCAGTGGCGTGCTTCGA 62.601 61.111 12.28 0.00 44.32 3.71
355 363 1.391157 ATGTTGGTTTGCAGTGGCGT 61.391 50.000 0.00 0.00 45.35 5.68
357 365 2.230992 TCATATGTTGGTTTGCAGTGGC 59.769 45.455 1.90 0.00 41.68 5.01
365 373 6.872585 AACCATCCAATCATATGTTGGTTT 57.127 33.333 24.24 16.05 45.05 3.27
375 383 4.047166 TGTCCTCCTAACCATCCAATCAT 58.953 43.478 0.00 0.00 0.00 2.45
381 389 1.486726 CCACTGTCCTCCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
412 420 5.080337 TCAAGTCTAGGACAACTCTGATGT 58.920 41.667 0.52 0.00 34.60 3.06
415 423 7.615757 TCAATATCAAGTCTAGGACAACTCTGA 59.384 37.037 0.52 0.00 34.60 3.27
433 444 8.606040 TCAGAAATAATGCGACATCAATATCA 57.394 30.769 0.00 0.00 0.00 2.15
458 470 5.873179 TCGCCGAAAGTCTGAAATAAATT 57.127 34.783 0.00 0.00 0.00 1.82
469 481 0.788391 AACGAACATCGCCGAAAGTC 59.212 50.000 0.00 0.00 45.12 3.01
474 486 1.006825 CACTGAACGAACATCGCCGA 61.007 55.000 0.00 0.00 45.12 5.54
486 498 2.032681 AGGCGCCTTCCACTGAAC 59.967 61.111 27.08 0.00 0.00 3.18
490 502 1.913762 ACTACAGGCGCCTTCCACT 60.914 57.895 30.60 9.44 0.00 4.00
502 514 7.869016 TTGAGATTTTACGAAGTCACTACAG 57.131 36.000 0.00 0.00 43.93 2.74
527 539 3.055094 AGAGACTGAACCGGCATAACATT 60.055 43.478 0.00 0.00 0.00 2.71
531 543 1.134367 CGAGAGACTGAACCGGCATAA 59.866 52.381 0.00 0.00 0.00 1.90
540 552 1.340248 GAACACCACCGAGAGACTGAA 59.660 52.381 0.00 0.00 0.00 3.02
544 556 0.387929 TGTGAACACCACCGAGAGAC 59.612 55.000 2.46 0.00 45.09 3.36
558 570 2.267426 CGCACATCGTATCCTTGTGAA 58.733 47.619 6.47 0.00 42.59 3.18
577 589 7.186128 TGTTTACTTCTATAAATGCATGCACG 58.814 34.615 25.37 7.51 0.00 5.34
601 613 5.866092 AGTCGCTCACATACATAAGCATATG 59.134 40.000 7.39 7.39 43.79 1.78
602 614 6.030548 AGTCGCTCACATACATAAGCATAT 57.969 37.500 0.00 0.00 34.39 1.78
606 618 3.180584 CGAAGTCGCTCACATACATAAGC 59.819 47.826 0.00 0.00 0.00 3.09
609 621 4.830826 ATCGAAGTCGCTCACATACATA 57.169 40.909 0.00 0.00 39.60 2.29
623 635 2.354805 GCCCTTCCAGTACAATCGAAGT 60.355 50.000 0.00 0.00 31.71 3.01
645 657 5.029654 CACAATTTTTCTTTTGCAAGTGGC 58.970 37.500 0.00 0.00 45.13 5.01
646 658 6.180771 ACACAATTTTTCTTTTGCAAGTGG 57.819 33.333 0.00 0.00 0.00 4.00
664 676 8.581578 GGTTCCTATTTGGATCTAAAAACACAA 58.418 33.333 8.42 0.00 45.68 3.33
673 686 6.069673 TCAGCTTTGGTTCCTATTTGGATCTA 60.070 38.462 0.00 0.00 45.68 1.98
682 695 3.806949 TTGGTCAGCTTTGGTTCCTAT 57.193 42.857 0.00 0.00 0.00 2.57
683 696 3.219281 GTTTGGTCAGCTTTGGTTCCTA 58.781 45.455 0.00 0.00 0.00 2.94
684 697 2.031870 GTTTGGTCAGCTTTGGTTCCT 58.968 47.619 0.00 0.00 0.00 3.36
686 699 2.223805 CCTGTTTGGTCAGCTTTGGTTC 60.224 50.000 0.00 0.00 34.47 3.62
688 701 1.402787 CCTGTTTGGTCAGCTTTGGT 58.597 50.000 0.00 0.00 34.47 3.67
689 702 0.032540 GCCTGTTTGGTCAGCTTTGG 59.967 55.000 0.00 0.00 38.35 3.28
693 706 2.116125 GGGCCTGTTTGGTCAGCT 59.884 61.111 0.84 0.00 43.75 4.24
694 707 2.116125 AGGGCCTGTTTGGTCAGC 59.884 61.111 4.50 0.00 43.75 4.26
748 761 4.626081 GTGCCTGGCCTGTCGTGT 62.626 66.667 17.53 0.00 0.00 4.49
845 3283 2.584031 TCTGGTACTAGGAGGTAGCCAA 59.416 50.000 6.38 0.00 38.82 4.52
859 3297 5.599999 TTAGGCTGATCTCTTTCTGGTAC 57.400 43.478 0.00 0.00 0.00 3.34
860 3298 6.620877 TTTTAGGCTGATCTCTTTCTGGTA 57.379 37.500 0.00 0.00 0.00 3.25
861 3299 5.505181 TTTTAGGCTGATCTCTTTCTGGT 57.495 39.130 0.00 0.00 0.00 4.00
885 3323 6.732896 TTGAGTCTCTCTCTGGTACTTTTT 57.267 37.500 0.65 0.00 43.13 1.94
886 3324 6.732896 TTTGAGTCTCTCTCTGGTACTTTT 57.267 37.500 0.65 0.00 43.13 2.27
887 3325 6.732896 TTTTGAGTCTCTCTCTGGTACTTT 57.267 37.500 0.65 0.00 43.13 2.66
888 3326 6.732896 TTTTTGAGTCTCTCTCTGGTACTT 57.267 37.500 0.65 0.00 43.13 2.24
1021 3459 0.890090 GCGAGTAGACCGGCTAGGAT 60.890 60.000 0.00 0.00 45.00 3.24
1060 3498 4.819761 GATGGAGTGGAGCGCGCA 62.820 66.667 35.10 10.31 0.00 6.09
1488 3926 2.859165 TGACCCTCTCCATGTTGAAC 57.141 50.000 0.00 0.00 0.00 3.18
1530 3968 7.759433 GTGGTCAATTTTATGTTTCAATCCGAT 59.241 33.333 0.00 0.00 0.00 4.18
1577 4018 6.410540 ACAAACTGTAAAGCAATGGGAAAAA 58.589 32.000 0.00 0.00 0.00 1.94
1635 4102 1.362717 CACCCTACGCCTGTATCGG 59.637 63.158 0.00 0.00 0.00 4.18
1720 4224 3.305897 CGAAATAAGCGTGCATACTGTCA 59.694 43.478 0.00 0.00 0.00 3.58
1820 4327 9.453572 TGTCAAGCTATTGAGATAAGTTCATTT 57.546 29.630 0.00 0.00 45.96 2.32
1840 4347 3.430895 GCAACCAATTCATGCTTGTCAAG 59.569 43.478 8.31 8.31 37.12 3.02
1852 4385 5.343307 ACCAATCAATAGGCAACCAATTC 57.657 39.130 0.00 0.00 37.17 2.17
1855 4388 5.080337 TGTTACCAATCAATAGGCAACCAA 58.920 37.500 0.00 0.00 31.49 3.67
2129 4669 3.721087 TTCTCCTTGGACTTCCCATTC 57.279 47.619 0.00 0.00 46.10 2.67
2345 9584 2.818751 TGGTGACCCAACTTCAAGTT 57.181 45.000 0.00 0.00 39.39 2.66
2446 9797 3.633525 AGCATGAGTAGCAAGAGAGAGAG 59.366 47.826 0.00 0.00 0.00 3.20
2564 9927 1.095228 TGCGCAGGGAATTTCGGATC 61.095 55.000 5.66 0.00 0.00 3.36
2594 9957 8.955061 AATCTTCACACTTGTTTCGATTTATG 57.045 30.769 0.00 0.00 0.00 1.90
2945 15540 7.926018 TCATGACAACATCGCTAGTGTTATTAT 59.074 33.333 2.66 0.00 37.69 1.28
2949 15544 5.066968 TCATGACAACATCGCTAGTGTTA 57.933 39.130 2.66 0.00 37.69 2.41
2950 15545 3.925379 TCATGACAACATCGCTAGTGTT 58.075 40.909 2.66 0.00 40.23 3.32
2953 15551 6.089249 TGATATCATGACAACATCGCTAGT 57.911 37.500 0.00 0.00 34.15 2.57
3088 15693 4.164030 TCAATAATAGGCAGGTTGAGCTGA 59.836 41.667 13.90 0.00 0.00 4.26
3127 15732 2.289631 CGCATTAGCTCCCCATATGTCA 60.290 50.000 1.24 0.00 39.10 3.58
3361 15968 5.300752 CGGATAAGAAGTTGAGCACCATAT 58.699 41.667 0.00 0.00 0.00 1.78
3520 16161 4.666655 GCATATACCTTTTATCAGTGCGCG 60.667 45.833 0.00 0.00 0.00 6.86
3612 17848 6.566079 TGAACACATCAATTATCTCTCCCT 57.434 37.500 0.00 0.00 34.30 4.20
3713 17951 5.148651 ACTAACCACACCACTATCAAGAC 57.851 43.478 0.00 0.00 0.00 3.01
3775 18017 2.283966 ACAGAGGTGGACCCGGAG 60.284 66.667 0.73 0.00 38.74 4.63
3869 18112 5.601662 AATCCATCTGATTACGTCATCGTT 58.398 37.500 5.32 0.00 41.96 3.85
3901 18144 6.801377 GCTAATGCAACATAATTTATGCGCTA 59.199 34.615 22.15 14.05 41.61 4.26
3978 18473 5.212194 GTGAGCGCAAAAATAGTTGAAGAA 58.788 37.500 11.47 0.00 0.00 2.52
4296 19138 2.364632 TGTGCCGATGGATAAAACCAG 58.635 47.619 0.00 0.00 43.49 4.00
4355 19197 6.138546 CACGTATTTTTGTTTCTGTCGAACTG 59.861 38.462 0.00 0.00 0.00 3.16
4356 19198 6.189567 CACGTATTTTTGTTTCTGTCGAACT 58.810 36.000 0.00 0.00 0.00 3.01
4357 19199 5.394322 CCACGTATTTTTGTTTCTGTCGAAC 59.606 40.000 0.00 0.00 0.00 3.95
4359 19201 4.571580 ACCACGTATTTTTGTTTCTGTCGA 59.428 37.500 0.00 0.00 0.00 4.20
4362 19214 5.824097 ACCTACCACGTATTTTTGTTTCTGT 59.176 36.000 0.00 0.00 0.00 3.41
4369 19221 4.320870 ACTGGACCTACCACGTATTTTTG 58.679 43.478 0.00 0.00 44.64 2.44
4371 19223 4.628963 AACTGGACCTACCACGTATTTT 57.371 40.909 0.00 0.00 44.64 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.